1.New files:
a. Fits for a given module, column, and row:
i) BP_fit.cpp
ii) BP_fit_M431.cpp
iii) BP_fit_thin.cpp (use a different scan as the standard module)
iv) CS_fit.cpp
v) CuFluo_fit.cpp
b. Calibration bash files:
i) BP_scan_both_speed.sh
ii) CS_scan_both_speed.sh
iii) CuFluo_exposure_both_speed.sh
v) BP_scan_thinSensor.sh (use a different scan than the standard one)
c. Analysis:
i) CS_analysis_M431.cpp
ii) CS_analysis_M439.cpp
ii) BP_analysis_thinSensor.cpp
d) Default pixels map for JF systems
i) Default_pixels_array.cpp (gives 3 bin files with the default pixels of the JF system at G0, G1, G2, HG0, view from the front side)
2. Changes
a. Calibration bash files
- BP_scan_JF11.sh (changed pc of the wave generator)
- CuFluo_exposure.sh (increase frames)
- filename_creator.sh ( defined parameter DSTIP to source it from any receiver pc. The pccalib.sh has to be sourced before)
b. Analysis
- BP_analysis.cpp ( avoid abort of the analysis due to empty fits in the plotting of the ADU versus mV for the defined pixels )
- CS_analysis.cpp
c. Run_JFCalibration.txt
Due to the amplifier plateau at the end of its range. According to the
datasheet of the amplifier (Analog devices model ADA4870) the output
voltage swing is 37 V with a 40 V supply. This is the cause of the
non-linearity at the end of the scans. The fit should only extend to
7 V - (3 V / gain factor of 5) = 6.4 V. All modules have been rerun.
For very unruly datasets, all points can have negative error (average of the same value has no well defined error).
Can't work out how to preserve gain switching checks and remove these points at the same time. So check.
With the new range finding, this is now taken into account.
Points with negative error will not be fit, since there will be an entry in the second array.
Not having these points in the first array would change the range for the second array.
