From 4f35d285ac5d31d151976e4525cd542d8ee922be Mon Sep 17 00:00:00 2001
From: hinger_v <viktoria.hinger@psi.ch>
Date: Tue, 7 Sep 2021 13:50:56 +0200
Subject: [PATCH] Adapt analysis code to avoid hardcoded absolute paths (add
 additional argv), add paths only in filename_creator

---
 BP_analysis.cpp          |  29 +++++--
 BP_scan.sh               |   3 +-
 CS_analysis.cpp          |  81 ++++++++++++++++---
 CS_scan.sh               |   5 +-
 CuFluo_analysis.cpp      |  35 +++++++--
 CuFluo_exposure.sh       |   5 +-
 JFMC_CalibWriter_wBP.cpp |   9 ++-
 filename_creator.sh      |  59 ++++++++------
 filename_creator_SR.sh   | 112 ++++++++++++++++++++++++++
 run_JFCalibration.txt    | 164 +++++++++++++++++++++++++++++++++++++++
 10 files changed, 449 insertions(+), 53 deletions(-)
 create mode 100644 filename_creator_SR.sh

diff --git a/BP_analysis.cpp b/BP_analysis.cpp
index 45034d9..5f4f500 100644
--- a/BP_analysis.cpp
+++ b/BP_analysis.cpp
@@ -1,4 +1,5 @@
 // to analyse the backplane pulsing data per module
+// changes by VH 210906: to eliminate hardcoded absolute paths, uses location of the analysis root files as additional input argument (accordingly changed in filename_creator.sh)
 
 #include "../sls_detector_calibration/jungfrauCommonHeader.h"
 #include "../sls_detector_calibration/jungfrauCommonFunctions.h"
@@ -33,15 +34,26 @@ int main(int argc, char* argv[]) {
   gROOT->SetBatch(1);
   gStyle->SetOptFit(11);
 
+  /*
   if (argc != 3) {
     cout << "Correct usage:" << endl;
     cout << "arg 1: specify module number" << endl;
     cout << "arg 2: specify data location" << endl;
     exit(1);
   }
+  */ //uncomment for SR
+
+  if (argc != 4) {
+    cout << "Correct usage:" << endl;
+    cout << "arg 1: specify module number" << endl;
+    cout << "arg 2: specify data location (folder + data file prefix)" << endl;
+    cout << "arg 3: specify location of analysis root files" << endl;
+    exit(1);
+  } //uncomment for VH 210906
 
   string module_str = argv[1];
   string data_loc = argv[2];
+  string anadata_loc = argv[3]; //uncomment for VH 210906
 
   int createHistos = 1; // set to 0 to do a fit-only run
   int createPerStepHistos = 0; //debug
@@ -58,8 +70,10 @@ int main(int argc, char* argv[]) {
   TH2F* avg_adcG1_map [220];
   TH2F* avg_adcG1er_map [220];
   
-  char savename[128];
-  char filename[128];
+  //char savename[128]; //uncomment for SR
+  //char filename[128]; //uncomment for SR
+  char savename[256]; //uncomment for VH 210902
+  char filename[256]; //uncomment for VH 210902
 
   // create necessary directories with permissions drwxrwxr-x
   // data/Mxxx
@@ -72,7 +86,8 @@ int main(int argc, char* argv[]) {
   sprintf(savename,"plots/M%s/BackplanePulsing", module_str.c_str());
   mkdir(savename, S_IRWXU | S_IRWXG | S_IROTH | S_IXOTH);
   // /mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/Mxxx_CalibAna
-  sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna", module_str.c_str());
+  //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna", module_str.c_str()); //uncomment for SR
+  sprintf(savename,"%s", anadata_loc.c_str()); //uncomment for VH 210906
   mkdir(savename, S_IRWXU | S_IRWXG | S_IROTH | S_IXOTH);
 
   double xs[220];
@@ -186,7 +201,7 @@ int main(int argc, char* argv[]) {
       cout << "exiting to make sure you notice" << endl;
       exit(1);
     }
-    
+      
     int framecounter = 0;
 
     for (int filei = 0; filei < 3; filei++) {
@@ -258,7 +273,8 @@ int main(int argc, char* argv[]) {
     } // end of files
 
     // save histograms
-    sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna/BP_histos_M%s.root", module_str.c_str(), module_str.c_str());
+    //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna/BP_histos_M%s.root", module_str.c_str(), module_str.c_str()); //uncomment for SR
+    sprintf(savename,"%s/BP_histos_M%s.root", anadata_loc.c_str(), module_str.c_str()); //uncomment for VH 210906
     TFile* saved_file = new TFile((const char *)(savename),"RECREATE");
 
     for (int i = 0; i < 220; i++) {
@@ -272,7 +288,8 @@ int main(int argc, char* argv[]) {
   } else {
     // load histos
     cout << "LOADING HISTOS" << endl;
-    sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna/BP_histos_M%s.root", module_str.c_str(), module_str.c_str());
+    //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna/BP_histos_M%s.root", module_str.c_str(), module_str.c_str()); //uncomment for SR
+    sprintf(savename,"%s/BP_histos_M%s.root", anadata_loc.c_str(), module_str.c_str()); //uncomment for VH 210906
     TFile* saved_file = new TFile((const char *)(savename),"READ");
 
     for (int i = 0; i < 220; i++) {
diff --git a/BP_scan.sh b/BP_scan.sh
index c2ede11..0bf1cf5 100644
--- a/BP_scan.sh
+++ b/BP_scan.sh
@@ -6,9 +6,10 @@
 # - setup_env.sh souced
 # - the hostname is set
 # - detector is on
+# - Filename_creator has been run (with correct module #)
 # - waveform generator is on
 # - amplifier board is powered and unconnected.
-
+# - last file should be 2097184000 bytes big. 
 # connect to pc8830 (or any RH7 machine connected to the pulser and, after klog, run the command
 #  nc -k -n -v -l -p 5555 -e /bin/bash 
 
diff --git a/CS_analysis.cpp b/CS_analysis.cpp
index 4a316c8..d47934a 100644
--- a/CS_analysis.cpp
+++ b/CS_analysis.cpp
@@ -1,4 +1,6 @@
 // file to take current source scan files, analyse and plot them.
+// changes by VH 210906: to eliminate hardcoded absolute paths, uses location of the analysis root files as additional input argument (accordingly changed in filename_creator.sh)
+
 
 #include "../sls_detector_calibration/jungfrauCommonHeader.h"
 #include "../sls_detector_calibration/jungfrauCommonFunctions.h"
@@ -30,12 +32,15 @@ double checkRangeMinForRCEffect(double range_min) {
 
 }
 
+
+
 int main(int argc, char* argv[]) {
 
   jungfrauStyle();
   gROOT->SetBatch(1);
   gStyle->SetOptFit(11);
 
+  /*
   if (argc != 4) {
     cout << "Correct usage:" << endl;
     cout << "arg 1: specify module number" << endl;
@@ -44,10 +49,31 @@ int main(int argc, char* argv[]) {
     cout << " " << endl;
     exit(1);
   }
+  */ //uncomment for SR
+
+  if (argc != 5) {
+    cout << "Correct usage:" << endl;
+    cout << "arg 1: specify module number" << endl;
+    cout << "arg 2: specify data location folder" << endl;
+    cout << "arg 3: specify data file prefix" << endl;
+    cout << "arg 4: specify location of analysis root files" << endl;
+    cout << " " << endl;
+    exit(1);
+  } //uncomment for VH 210906
+
+
+
+
 
   string module_str = argv[1];
   string data_loc = argv[2];
   string data_file = argv[3];
+  string anadata_loc = argv[4]; //uncomment for VH 210906
+
+
+
+
+
 
   vector<string> scan_v1;
   scan_v1.push_back("002");
@@ -252,6 +278,39 @@ int main(int argc, char* argv[]) {
   scan_v6.push_back("355");
   scan_v6.push_back("364");
   scan_v6.push_back("366");
+  scan_v6.push_back("243");
+  scan_v6.push_back("339");
+  scan_v6.push_back("341");
+  scan_v6.push_back("368");
+  scan_v6.push_back("376");
+  scan_v6.push_back("379");
+
+  scan_v6.push_back("359");
+  scan_v6.push_back("363");
+  scan_v6.push_back("365");
+  scan_v6.push_back("347");
+  scan_v6.push_back("366");
+
+
+  scan_v6.push_back("268");
+  scan_v6.push_back("300");
+  scan_v6.push_back("302");
+  scan_v6.push_back("303");
+  scan_v6.push_back("309");
+  scan_v6.push_back("326");
+
+  scan_v6.push_back("308");
+  scan_v6.push_back("322");
+  scan_v6.push_back("328");
+  scan_v6.push_back("332");
+  scan_v6.push_back("335");
+  scan_v6.push_back("353");
+  scan_v6.push_back("335_FW2_2");
+  scan_v6.push_back("353_FW2_2");
+
+  scan_v6.push_back("262_FWcheck_1_1_1");
+  scan_v6.push_back("262_FWcheck_1_1_1_test");
+  scan_v6.push_back("262_FWcheck_1_2_rc210831");
 
 
   jungfrauFile *thisfile = new jungfrauFile();
@@ -274,7 +333,8 @@ int main(int argc, char* argv[]) {
   TH2F* no_g0g1_calib_map = new TH2F("no_g0g1_calib_map","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
   TH2F* no_g1g2_calib_map = new TH2F("no_g1g2_calib_map","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
 
-  char savename[128];
+  //char savename[128];
+  char savename[256]; // VH 210902
 
   int createHistoFile = 1; //set 0 for a fit-only run
   int createPerStepHistos = 0; //debug 
@@ -294,11 +354,12 @@ int main(int argc, char* argv[]) {
   sprintf(savename,"plots/M%s/CurrentSource", module_str.c_str());
   mkdir(savename, S_IRWXU | S_IRWXG | S_IROTH | S_IXOTH);
   // /mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/Mxxx_CalibAna
-  sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna", module_str.c_str());
+  //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna", module_str.c_str()); //uncomment for SR
+  sprintf(savename,"%s", anadata_loc.c_str()); //uncomment for VH 210906
   mkdir(savename, S_IRWXU | S_IRWXG | S_IROTH | S_IXOTH);
 
   // open first file
-  sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str());
+  sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str()); //VH: note, this adds a double slash in the filepath
   thisfile->open((char*)savename, 0);
 
   // calculate pixel mask
@@ -312,7 +373,7 @@ int main(int argc, char* argv[]) {
 
   for (int i = 0; i < 640; i++) {
     thisfile->readNextFrame();
-    pixelMaskObject->maskIfGainNot(1, thisfile->getFrameDataHandle(), pixel_mask);
+    pixelMaskObject->maskIfGainNot(1, thisfile->getFrameDataHandle(), pixel_mask); // change to Not(2  to fix FW error during JF11 FW develop. needed for modules 243-379
   }
   cout << "after G1, n masked pixels is " << pixelMaskObject->getNMasked(pixel_mask) << endl;
 
@@ -504,7 +565,7 @@ int main(int argc, char* argv[]) {
 
     for (int filei = 0; filei < nfiles; filei++) {
 
-      sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str());
+      sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str()); //VH: note, this adds a double slash in the filepath
       thisfile->open((char*)savename, filei);
 
       while(thisfile->readNextFrame()) {
@@ -525,7 +586,7 @@ int main(int argc, char* argv[]) {
 
     for (int filei = 0; filei < nfiles; filei++) {
 
-      sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str());
+      sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str()); //VH: note, this adds a double slash in the filepath
       thisfile->open((char*)savename, filei);
 
       if (filei == 0) {
@@ -560,7 +621,7 @@ int main(int argc, char* argv[]) {
 	    gain_histos[i]->Fill(gain);
 	    if (gain == 0) {
 	      adc_histos_g0[i]->Fill(adc);
-	    } else if (gain == 1) {
+	    } else if ((gain == 1)||(gain == 2)) {  //(gain == 2) to fix FW error during JF11 FW develop. needed for modules 243-379 
 	      adc_histos_g1[i]->Fill(adc);
 	    } else if (gain == 3) {
 	      adc_histos_g2[i]->Fill(adc);
@@ -764,7 +825,8 @@ int main(int argc, char* argv[]) {
     }
  
     // save histograms
-    sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna/CS_histos_M%s.root", module_str.c_str(), module_str.c_str());
+    //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna/CS_histos_M%s.root", module_str.c_str(), module_str.c_str()); //uncomment for SR
+    sprintf(savename,"%s/CS_histos_M%s.root", anadata_loc.c_str(), module_str.c_str()); //uncomment for VH 210906
     TFile* saved_file = new TFile((const char *)(savename),"RECREATE");
 
     for (int i = 0; i < 97; i++) {
@@ -779,7 +841,8 @@ int main(int argc, char* argv[]) {
   } else {
     // load histos
     cout << "LOADING HISTOS" << endl;
-    sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna/CS_histos_M%s.root", module_str.c_str(), module_str.c_str());
+    //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna/CS_histos_M%s.root", module_str.c_str(), module_str.c_str()); //uncomment for SR
+    sprintf(savename,"%s/CS_histos_M%s.root", anadata_loc.c_str(), module_str.c_str()); //uncomment for VH 210906
     TFile* saved_file = new TFile((const char *)(savename),"READ");
     
     for (int i = 0; i < 97; i++) {
diff --git a/CS_scan.sh b/CS_scan.sh
index 854c3e9..dce7827 100644
--- a/CS_scan.sh
+++ b/CS_scan.sh
@@ -6,14 +6,15 @@
 # - setup_env.sh souced 
 # - the hostname is set
 # - detector is on
-# fileneame script has been sourced 
+# - fileneame script has been sourced 
+# last file should have exactly 4194368000 byte in it.
 
 
 
 KILLRCV="killall ju_udp_receiver_3threads_2_0"
 $KILLRCV
 
-
+sls_detector_put stop #just in case
 sls_detector_put powerchip 1
 
 
diff --git a/CuFluo_analysis.cpp b/CuFluo_analysis.cpp
index 6706550..32068c0 100644
--- a/CuFluo_analysis.cpp
+++ b/CuFluo_analysis.cpp
@@ -2,6 +2,7 @@
 // make correction and save spectrum per pixel
 // then fit fluo spectrum per pixel
 // and save peak position and uncertainty
+// changes by VH 210906: to eliminate hardcoded absolute paths, uses location of the analysis root files as additional input argument (accordingly changed in filename_creator.sh)
 
 #include "../sls_detector_calibration/jungfrauCommonHeader.h"
 #include "../sls_detector_calibration/jungfrauCommonFunctions.h"
@@ -28,6 +29,7 @@ int main(int argc, char* argv[]) {
   jungfrauStyle();
   gStyle->SetOptFit(11);
 
+  /*
   if (argc != 6) {
     cout << "Correct usage:" << endl;
     cout << "arg 1: specify module number" << endl;
@@ -38,17 +40,33 @@ int main(int argc, char* argv[]) {
     cout << " " << endl;
     exit(1);
   }
+  */ //uncomment for SR
+
+  if (argc != 7) {
+    cout << "Correct usage:" << endl;
+    cout << "arg 1: specify module number" << endl;
+    cout << "arg 2: specify HG0 or G0" << endl;
+    cout << "arg 3: specify data location folder" << endl;
+    cout << "arg 4: specify pede file prefix" << endl;
+    cout << "arg 5: specify data file prefix" << endl;
+    cout << "arg 6: specify location of analysis root files" << endl;
+    cout << " " << endl;
+    exit(1);
+  } //uncomment for VH 210906
 
   string module_str = argv[1];
   string gain_str = argv[2];
   string data_loc = argv[3];
   string pede_file = argv[4];
   string data_file = argv[5];
+  string anadata_loc = argv[6]; //uncomment for VH 210906
 
   int createHistoFile = 1;
 
-  char histoname[128];
-  char savename[128];
+  //char histoname[128];
+  //char savename[128];
+  char histoname[256]; // VH 210902
+  char savename[256];  // VH 210902
   int filen = 20;
 
   // create necessary directories with permissions drwxrwxr-x
@@ -68,7 +86,8 @@ int main(int argc, char* argv[]) {
   sprintf(savename,"plots/M%s/CuFluo/HG0", module_str.c_str());
   mkdir(savename, S_IRWXU | S_IRWXG | S_IROTH | S_IXOTH);
   // /mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/Mxxx_CalibAna
-  sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna", module_str.c_str());
+  //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna", module_str.c_str()); //uncomment for SR
+  sprintf(savename,"%s", anadata_loc.c_str()); //uncomment for VH 210906
   mkdir(savename, S_IRWXU | S_IRWXG | S_IROTH | S_IXOTH);
 
   jungfrauPixelMask *pixelMaskObject = new jungfrauPixelMask();
@@ -98,7 +117,7 @@ int main(int argc, char* argv[]) {
     TH2F* pedeRMSG0 = new TH2F("pedeRMSG0","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
     
     // open pede file
-    sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), pede_file.c_str());
+    sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), pede_file.c_str()); //VH: note, this adds a double slash in the filepath
     thisfile->open((char*)savename, 0);
 
     // calculate pixel mask
@@ -252,7 +271,7 @@ int main(int argc, char* argv[]) {
     for (int filei = 0; filei < filen; filei++) {
 
       // open data file
-      sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str());
+      sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str()); //VH: note, this adds a double slash in the filepath
       thisfile->open((char*)savename, filei);
       
       while (thisfile->readNextFrame()) {
@@ -328,7 +347,8 @@ int main(int argc, char* argv[]) {
 
     } // end of file loop
 
-    sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna/CuFluo_%s_file0to%d.root", module_str.c_str(), gain_str.c_str(), filen-1);
+    //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna/CuFluo_%s_file0to%d.root", module_str.c_str(), gain_str.c_str(), filen-1);
+    sprintf(savename,"%s/CuFluo_%s_file0to%d.root", anadata_loc.c_str(), gain_str.c_str(), filen-1); //uncomment for VH 210906
     TFile* saved_file = new TFile((const char *)(savename),"RECREATE");
     adc2d_1->Write();
     adc2d_2->Write();
@@ -344,7 +364,8 @@ int main(int argc, char* argv[]) {
 
   c1->cd();
 
-  sprintf(savename,"/mnt/pcmoench_jungfrau_data/jungfrau_ana_sophie/M%s_CalibAna/CuFluo_%s_file0to%d.root", module_str.c_str(), gain_str.c_str(), filen-1);
+  //sprintf(savename,"/mnt/sls_det_storage/jungfrau_data1/jungfrau_ana_sophie/M%s_CalibAna/CuFluo_%s_file0to%d.root", module_str.c_str(), gain_str.c_str(), filen-1);
+  sprintf(savename,"%s/CuFluo_%s_file0to%d.root", anadata_loc.c_str(), gain_str.c_str(), filen-1); //uncomment for VH 210906
   TFile* comb_file = new TFile((const char *)(savename),"READ");
 
   pixelMaskObject->initialisePixelMask(pixel_mask);
diff --git a/CuFluo_exposure.sh b/CuFluo_exposure.sh
index 0d763ef..f1fcd92 100644
--- a/CuFluo_exposure.sh
+++ b/CuFluo_exposure.sh
@@ -33,12 +33,15 @@ $CLI setv 40
 $CLI setc 60
 $CLI HV on
 
+sls_detector_put clearbit 0x5d 0
 
 $CLI shutter 1 off
 echo "warmin up the board"
 sls_detector_put frames 40000
 sls_detector_put start 
 sleep 81
+sls_detector_put stop 
+
 echo "end of board warm up"
 
 
@@ -75,7 +78,7 @@ $TKFG0 &
 
 sls_detector_put frames 220000
 $CLI shutter 1 on
- sleep 1
+sleep 1
 sls_detector_put start 
 sleep 450
 # 200k frames at 500 frames per second takes 400s
diff --git a/JFMC_CalibWriter_wBP.cpp b/JFMC_CalibWriter_wBP.cpp
index 5267c05..a3de022 100644
--- a/JFMC_CalibWriter_wBP.cpp
+++ b/JFMC_CalibWriter_wBP.cpp
@@ -39,7 +39,8 @@ int main(int argc, char* argv[]) {
 
   string module_str = argv[1];
 
-  char savename[128];
+  //char savename[128];
+  char savename[256]; // VH 210902
 
   // today's date
   time_t rawtime;
@@ -129,7 +130,7 @@ int main(int argc, char* argv[]) {
     mapsObject->g2VALs[i] = 0.;
   }
 
-  TH1F* hg0histall = new TH1F("hg0histall","",100,80,120);
+  TH1F* hg0histall = new TH1F("hg0histall","",160,80,160);
   TH1F* g0histall = new TH1F("g0histall","",100,20,60);
   TH1F* g1histall = new TH1F("g1histall","",100,-3,0);
   TH1F* g2histall = new TH1F("g2histall","",100,-0.2,0);
@@ -139,7 +140,7 @@ int main(int argc, char* argv[]) {
   TH1F* g1ferhistall = new TH1F("g1ferhistall","",100,0,0.01);
   TH1F* g2ferhistall = new TH1F("g2ferhistall","",100,0,0.05);
 
-  TH1F* hg0histcut = new TH1F("hg0histcut","",100,80,120);
+  TH1F* hg0histcut = new TH1F("hg0histcut","",160,80,160);
   TH1F* g0histcut = new TH1F("g0histcut","",100,20,60);
   TH1F* g1histcut = new TH1F("g1histcut","",100,-3,0);
   TH1F* g2histcut = new TH1F("g2histcut","",100,-0.2,0);
@@ -299,7 +300,7 @@ int main(int argc, char* argv[]) {
     // crazy and missing value check: replace with module default
     // think of a way to get the limits better
     
-    if (mapsObject->hg0VALs[i] < 80 || mapsObject->hg0VALs[i] > 120 || isnan(mapsObject->hg0VALs[i])) {
+    if (mapsObject->hg0VALs[i] < 80 || mapsObject->hg0VALs[i] > 160 || isnan(mapsObject->hg0VALs[i])) {
       mapsObject->hg0VALs[i] = defaultHG0;
       defaultvalmap_hg0->Fill(i%NC,i/NC,1);
     }
diff --git a/filename_creator.sh b/filename_creator.sh
index f6d4568..8fe180e 100644
--- a/filename_creator.sh
+++ b/filename_creator.sh
@@ -1,41 +1,53 @@
 #!/bin/bash
-echo "#############################################################################"
-echo "#############################################################################"
-echo "#############################################################################"
-echo "#######   REMEMBER TO USE SOURCE, NOT SH to call this script     ############"
-echo "#############################################################################"
-echo "#############################################################################"
-echo "#############################################################################"
 
+if [[ "$0" == *"filename_creator.sh"* ]]; then
+    echo "script changes env. variables: should be invoked with source, not sh "    
+    exit
+    
+fi
+
+
+echo $0
 echo "printing filenames for module " $1
-echo "copy paste to execute "
-datafolder="/mnt/pcmoench_jungfrau_calib/data/Module_"$1"_Calib/"
+
+
+#define folder structure
+parentdir="/mnt/sls_det_storage/"
+calib_relativedir="jungfrau_calib/data/Module_"$1"_Calib/"
+ana_relativedir="jungfrau_data1/jungfrau_ana_sophie/M"$1"_CalibAna"
+calibdatafolder=$parentdir$calib_relativedir
+anadatafolder=$parentdir$ana_relativedir
+#datafolder="/mnt/sls_det_storage/jungfrau_calib/data/Module_"$1"_Calib/"
 datestring=$(date +%F)
-echo "mkdir "$datafolder 
+echo "Relative calib directory is "$calib_relativedir
+echo "Relative analysis results directory is "$ana_relativedir
+echo "mkdir "$calibdatafolder "if not already existing."
+#mkdir -p $calibdatafolder 
 
-export TKBPG0="ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_ 10.1.4.105"
 
-export TKBPHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"                                                                               
+export TKBPG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"BP_M"$1"_"$datestring"_ 10.1.4.105"
 
-export TKCSHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"
+export TKBPHG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"BP_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"                                                                               
 
-export TKCSG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_ 10.1.4.105"
+export TKCSHG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CS_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"
+
+export TKCSG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CS_M"$1"_"$datestring"_ 10.1.4.105"
 
 
 
 
 echo "exporting the fluorescence receiver commands "
-export TKFG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CuFluoG0_M"$1"_"$datestring"_ 10.1.4.105"
-export TKFHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CuFluoHG0_M"$1"_"$datestring"_ 10.1.4.105"
-export TKPG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeG0_M"$1"_"$datestring"_ 10.1.4.105"
-export TKPHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeHG0_M"$1"_"$datestring"_ 10.1.4.105"
+export TKFG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CuFluoG0_M"$1"_"$datestring"_ 10.1.4.105"
+export TKFHG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CuFluoHG0_M"$1"_"$datestring"_ 10.1.4.105"
+export TKPG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"pedeG0_M"$1"_"$datestring"_ 10.1.4.105"
+export TKPHG0="ju_udp_receiver_3threads_2_0 S "$calibdatafolder"pedeHG0_M"$1"_"$datestring"_ 10.1.4.105"
 
 
 
 
 
 echo "printing the analysis commands " 
-for file in $(find $datafolder -type f -exec basename {} \; | grep 000000 ); do 
+for file in $(find $calibdatafolder -type f -exec basename {} \; | grep 000000 ); do 
     prefix=${file%_000000.dat}
     echo $prefix ; 
     if [[ $prefix == *"BP"* ]]; then
@@ -75,11 +87,12 @@ echo "----------------------------------------------------------------------"
 echo "---------------------START OF ANALYSIS CLI commands --------------------"
 echo "----------------------------------------------------------------------"
 echo "M"$1
-echo "./BP_analysis "$1" "$datafolder$bpfile
-echo "./CS_analysis "$1" "$datafolder $csfile
-echo "./CuFluo_analysis "$1" G0 "$datafolder $pgofile $cgofile 
-echo "./CuFluo_analysis "$1" HG0 "$datafolder $phgofile $chgofile 
+echo "./BP_analysis "$1" "$calibdatafolder$bpfile" "$anadatafolder 
+echo "./CS_analysis "$1" "$calibdatafolder" "$csfile" "$anadatafolder
+echo "./CuFluo_analysis "$1" G0 "$calibdatafolder $pgofile $cgofile $anadatafolder
+echo "./CuFluo_analysis "$1" HG0 "$calibdatafolder $phgofile $chgofile $anadatafolder
 echo "./JFMC_CalibWriter_wBP" "$1"
+echo " "
 echo "----------------------------------------------------------------------"
 echo "---------------------END OF ANALYSIS CLI commands --------------------"
 echo "----------------------------------------------------------------------"
diff --git a/filename_creator_SR.sh b/filename_creator_SR.sh
new file mode 100644
index 0000000..cbfc241
--- /dev/null
+++ b/filename_creator_SR.sh
@@ -0,0 +1,112 @@
+#!/bin/bash
+
+if [[ "$0" == *"filename_creator.sh"* ]]; then
+    echo "script changes env. variables: should be invoked with source, not sh "    
+    exit
+    
+fi
+
+
+echo $0
+echo "printing filenames for module " $1
+
+datafolder="/mnt/sls_det_storage/jungfrau_calib/data/Module_"$1"_Calib/"
+datestring=$(date +%F)
+echo "mkdir "$datafolder "if not already existing."
+mkdir -p $datafolder 
+
+
+export TKBPG0="ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_ 10.1.4.105"
+
+export TKBPHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"                                                                               
+
+export TKCSHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"
+
+export TKCSG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_ 10.1.4.105"
+
+
+
+
+echo "exporting the fluorescence receiver commands "
+export TKFG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CuFluoG0_M"$1"_"$datestring"_ 10.1.4.105"
+export TKFHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CuFluoHG0_M"$1"_"$datestring"_ 10.1.4.105"
+export TKPG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeG0_M"$1"_"$datestring"_ 10.1.4.105"
+export TKPHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeHG0_M"$1"_"$datestring"_ 10.1.4.105"
+
+
+
+
+
+echo "printing the analysis commands " 
+for file in $(find $datafolder -type f -exec basename {} \; | grep 000000 ); do 
+    prefix=${file%_000000.dat}
+    echo $prefix ; 
+    if [[ $prefix == *"BP"* ]]; then
+
+	    bpfile=$prefix
+  
+    fi
+     if [[ $prefix == *"CS"* ]]; then
+
+	   	csfile=$prefix 
+
+    fi
+    if [[ $prefix == *"oG0"* ]]; then
+
+	   cgofile=$prefix
+
+    fi 
+    if [[ $prefix == *"eG0"* ]]; then
+
+	   pgofile=$prefix
+
+    fi 
+    if [[ $prefix == *"oHG0"* ]]; then
+
+	   chgofile=$prefix
+
+    fi 
+    if [[ $prefix == *"eHG0"* ]]; then
+
+	   phgofile=$prefix
+
+    fi 
+
+#    echo "ss"
+done
+echo "----------------------------------------------------------------------"
+echo "---------------------START OF ANALYSIS CLI commands --------------------"
+echo "----------------------------------------------------------------------"
+echo "M"$1
+echo "./BP_analysis "$1" "$datafolder$bpfile
+echo "./CS_analysis "$1" "$datafolder $csfile
+echo "./CuFluo_analysis "$1" G0 "$datafolder $pgofile $cgofile 
+echo "./CuFluo_analysis "$1" HG0 "$datafolder $phgofile $chgofile 
+echo "./JFMC_CalibWriter_wBP" "$1"
+echo " "
+echo "----------------------------------------------------------------------"
+echo "---------------------END OF ANALYSIS CLI commands --------------------"
+echo "----------------------------------------------------------------------"
+
+
+echo "creating the output folders?   Y for yes "
+read -n 1 -s input
+if [[ $input = "Y" ]]; then 
+    echo "creating the output folders."
+    plotbasefolder="/afs/psi.ch/project/mythen/sophie/JFCalibration/plots/M"$1
+    mkdir -v $plotbasefolder
+    mkdir -v $plotbasefolder"/BackplanePulsing"
+#    mkdir -v $plotbasefolder"/Calib_"$datestring #done by/JFMC_CalibWrite 
+    mkdir -v $plotbasefolder"/CuFluo"
+    mkdir -v $plotbasefolder"/CuFluo/G0"
+    mkdir -v $plotbasefolder"/CuFluo/HG0"
+    mkdir -v $plotbasefolder"/CurrentSource"
+    outdatabasefolder="/afs/psi.ch/project/mythen/sophie/JFCalibration/data/M"$1
+    mkdir -v $outdatabasefolder
+    echo "Output folders created"
+  
+else
+    echo "Exiting script"
+ 
+fi
+ 
diff --git a/run_JFCalibration.txt b/run_JFCalibration.txt
index 85769cf..e5fd09f 100644
--- a/run_JFCalibration.txt
+++ b/run_JFCalibration.txt
@@ -1629,3 +1629,167 @@ M379
 ./CuFluo_analysis 379 G0 /mnt/pcmoench_jungfrau_calib/data/Module_379_Calib/ pedeG0_M379_2021-03-24 CuFluoG0_M379_2021-03-24
 ./CuFluo_analysis 379 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_379_Calib/ pedeHG0_M379_2021-03-24 CuFluoHG0_M379_2021-03-24
 ./JFMC_CalibWriter_wBP 379
+
+M359
+
+./BP_analysis 359 /mnt/pcmoench_jungfrau_calib/data/Module_359_Calib/BP_M359_2021-03-15
+./CS_analysis_JF11_JF11 359 /mnt/pcmoench_jungfrau_calib/data/Module_359_Calib/ CS_M359_2021-03-16
+./CuFluo_analysis 359 G0 /mnt/pcmoench_jungfrau_calib/data/Module_359_Calib/ pedeG0_M359_2021-03-17 CuFluoG0_M359_2021-03-16
+./CuFluo_analysis 359 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_359_Calib/ pedeHG0_M359_2021-03-17 CuFluoHG0_M359_2021-03-17
+./JFMC_CalibWriter_wBP 359
+
+M363
+./BP_analysis 363 /mnt/pcmoench_jungfrau_calib/data/Module_363_Calib/BP_M363_2021-03-15
+./CS_analysis_JF11 363 /mnt/pcmoench_jungfrau_calib/data/Module_363_Calib/ CS_M363_2021-03-16
+./CuFluo_analysis 363 G0 /mnt/pcmoench_jungfrau_calib/data/Module_363_Calib/ pedeG0_M363_2021-03-17 CuFluoG0_M363_2021-03-17
+./CuFluo_analysis 363 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_363_Calib/ pedeHG0_M363_2021-03-17 CuFluoHG0_M363_2021-03-17
+./JFMC_CalibWriter_wBP 363
+
+M365
+./BP_analysis 365 /mnt/pcmoench_jungfrau_calib/data/Module_365_Calib/BP_M365_2021-03-16
+./CS_analysis_JF11 365 /mnt/pcmoench_jungfrau_calib/data/Module_365_Calib/ CS_M365_2021-03-16
+./CuFluo_analysis 365 G0 /mnt/pcmoench_jungfrau_calib/data/Module_365_Calib/ pedeG0_M365_2021-03-17 CuFluoG0_M365_2021-03-17
+./CuFluo_analysis 365 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_365_Calib/ pedeHG0_M365_2021-03-17 CuFluoHG0_M365_2021-03-17
+./JFMC_CalibWriter_wBP 365
+
+M364
+./BP_analysis 364 /mnt/pcmoench_jungfrau_calib/data/Module_364_Calib/BP_M364_2021-03-15
+./CS_analysis_JF11 364 /mnt/pcmoench_jungfrau_calib/data/Module_364_Calib/ CS_M364_2021-03-04
+./CuFluo_analysis 364 G0 /mnt/pcmoench_jungfrau_calib/data/Module_364_Calib/ pedeG0_M364_2021-03-09 CuFluoG0_M364_2021-03-09
+./CuFluo_analysis 364 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_364_Calib/ pedeHG0_M364_2021-03-11 CuFluoHG0_M364_2021-03-11
+./JFMC_CalibWriter_wBP 364
+
+M355
+./BP_analysis 355 /mnt/pcmoench_jungfrau_calib/data/Module_355_Calib/BP_M355_2021-03-09
+./CS_analysis_JF11 355 /mnt/pcmoench_jungfrau_calib/data/Module_355_Calib/ CS_M355_2021-03-04
+./CuFluo_analysis 355 G0 /mnt/pcmoench_jungfrau_calib/data/Module_355_Calib/ pedeG0_M355_2021-03-11 CuFluoG0_M355_2021-03-11
+./CuFluo_analysis 355 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_355_Calib/ pedeHG0_M355_2021-03-11 CuFluoHG0_M355_2021-03-11
+./JFMC_CalibWriter_wBP 355
+
+
+M361
+./BP_analysis 361 /mnt/pcmoench_jungfrau_calib/data/Module_361_Calib/BP_M361_2021-03-15
+./CS_analysis_JF11 361 /mnt/pcmoench_jungfrau_calib/data/Module_361_Calib/ CS_M361_2021-03-04
+./CuFluo_analysis 361 G0 /mnt/pcmoench_jungfrau_calib/data/Module_361_Calib/ pedeG0_M361_2021-03-11 CuFluoG0_M361_2021-03-11
+./CuFluo_analysis 361 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_361_Calib/ pedeHG0_M361_2021-03-11 CuFluoHG0_M361_2021-03-11
+./JFMC_CalibWriter_wBP 361
+
+M347
+./BP_analysis 347 /mnt/pcmoench_jungfrau_calib/data/Module_347_Calib/BP_M347_2021-03-08
+./CS_analysis_JF11 347 /mnt/pcmoench_jungfrau_calib/data/Module_347_Calib/ CS_M347_2021-03-04
+./CuFluo_analysis 347 G0 /mnt/pcmoench_jungfrau_calib/data/Module_347_Calib/ pedeG0_M347_2021-03-11 CuFluoG0_M347_2021-03-11
+./CuFluo_analysis 347 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_347_Calib/ pedeHG0_M347_2021-03-11 CuFluoHG0_M347_2021-03-11
+./JFMC_CalibWriter_wBP 347
+
+M366
+./BP_analysis 366 /mnt/pcmoench_jungfrau_calib/data/Module_366_Calib/BP_M366_2021-03-09
+./CS_analysis_JF11 366 /mnt/pcmoench_jungfrau_calib/data/Module_366_Calib/ CS_M366_2021-03-04
+./CuFluo_analysis 366 G0 /mnt/pcmoench_jungfrau_calib/data/Module_366_Calib/ pedeG0_M366_2021-03-11 CuFluoG0_M366_2021-03-11
+./CuFluo_analysis 366 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_366_Calib/ pedeHG0_M366_2021-03-11 CuFluoHG0_M366_2021-03-11
+./JFMC_CalibWriter_wBP 366
+
+268
+./BP_analysis 268 /mnt/pcmoench_jungfrau_calib/data/Module_268_Calib/BP_M268_2021-06-24
+./CS_analysis 268 /mnt/pcmoench_jungfrau_calib/data/Module_268_Calib/ CS_M268_2021-06-17
+./CuFluo_analysis 268 G0 /mnt/pcmoench_jungfrau_calib/data/Module_268_Calib/ pedeG0_M268_2021-06-22 CuFluoG0_M268_2021-06-22
+./CuFluo_analysis 268 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_268_Calib/ pedeHG0_M268_2021-06-22 CuFluoHG0_M268_2021-06-22
+./JFMC_CalibWriter_wBP 268
+
+M300
+./BP_analysis 300 /mnt/pcmoench_jungfrau_calib/data/Module_300_Calib/BP_M300_2021-06-24
+./CS_analysis 300 /mnt/pcmoench_jungfrau_calib/data/Module_300_Calib/ CS_M300_2021-06-17
+./CuFluo_analysis 300 G0 /mnt/pcmoench_jungfrau_calib/data/Module_300_Calib/ pedeG0_M300_2021-06-22 CuFluoG0_M300_2021-06-22
+./CuFluo_analysis 300 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_300_Calib/ pedeHG0_M300_2021-06-22 CuFluoHG0_M300_2021-06-22
+./JFMC_CalibWriter_wBP 300
+ 
+M302
+./BP_analysis 302 /mnt/pcmoench_jungfrau_calib/data/Module_302_Calib/BP_M302_2021-06-24
+./CS_analysis 302 /mnt/pcmoench_jungfrau_calib/data/Module_302_Calib/ CS_M302_2021-06-17
+./CuFluo_analysis 302 G0 /mnt/pcmoench_jungfrau_calib/data/Module_302_Calib/ pedeG0_M302_2021-06-22 CuFluoG0_M302_2021-06-22
+./CuFluo_analysis 302 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_302_Calib/ pedeHG0_M302_2021-06-22 CuFluoHG0_M302_2021-06-22
+./JFMC_CalibWriter_wBP 302
+ 
+M303
+./BP_analysis 303 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/BP_M303_2021-06-17
+./CS_analysis 303 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/ CS_M303_2021-06-17
+./CuFluo_analysis 303 G0 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/ pedeG0_M303_2021-06-22 CuFluoG0_M303_2021-06-22
+./CuFluo_analysis 303 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/ pedeHG0_M303_2021-06-22 CuFluoHG0_M303_2021-06-22
+./JFMC_CalibWriter_wBP 303
+ 
+M303
+./BP_analysis 303 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/BP_M303_2021-06-17
+./CS_analysis 303 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/ CS_M303_2021-06-17
+./CuFluo_analysis 303 G0 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/ pedeG0_M303_2021-06-22 CuFluoG0_M303_2021-06-22
+./CuFluo_analysis 303 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_303_Calib/ pedeHG0_M303_2021-06-22 CuFluoHG0_M303_2021-06-22
+./JFMC_CalibWriter_wBP 303
+ 
+M309
+./BP_analysis 309 /mnt/pcmoench_jungfrau_calib/data/Module_309_Calib/BP_M309_2021-06-17
+./CS_analysis 309 /mnt/pcmoench_jungfrau_calib/data/Module_309_Calib/ CS_M309_2021-06-17
+./CuFluo_analysis 309 G0 /mnt/pcmoench_jungfrau_calib/data/Module_309_Calib/ pedeG0_M309_2021-06-22 CuFluoG0_M309_2021-06-22
+./CuFluo_analysis 309 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_309_Calib/ pedeHG0_M309_2021-06-22 CuFluoHG0_M309_2021-06-22
+./JFMC_CalibWriter_wBP 309
+
+
+ M326
+./BP_analysis 326 /mnt/pcmoench_jungfrau_calib/data/Module_326_Calib/BP_M326_2021-06-17
+./CS_analysis 326 /mnt/pcmoench_jungfrau_calib/data/Module_326_Calib/ CS_M326_2021-06-17
+./CuFluo_analysis 326 G0 /mnt/pcmoench_jungfrau_calib/data/Module_326_Calib/ pedeG0_M326_2021-06-22 CuFluoG0_M326_2021-06-22
+./CuFluo_analysis 326 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_326_Calib/ pedeHG0_M326_2021-06-22 CuFluoHG0_M326_2021-06-22
+./JFMC_CalibWriter_wBP 326
+
+M308
+./BP_analysis 308 /mnt/pcmoench_jungfrau_calib/data/Module_308_Calib/BP_M308_2021-08-04
+./CS_analysis 308 /mnt/pcmoench_jungfrau_calib/data/Module_308_Calib/ CS_M308_2021-08-04
+./CuFluo_analysis 308 G0 /mnt/pcmoench_jungfrau_calib/data/Module_308_Calib/ pedeG0_M308_2021-08-04 CuFluoG0_M308_2021-08-04
+./CuFluo_analysis 308 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_308_Calib/ pedeHG0_M308_2021-08-04 CuFluoHG0_M308_2021-08-04
+./JFMC_CalibWriter_wBP 308
+
+M322
+./BP_analysis 322 /mnt/pcmoench_jungfrau_calib/data/Module_322_Calib/BP_M322_2021-08-04
+./CS_analysis 322 /mnt/pcmoench_jungfrau_calib/data/Module_322_Calib/ CS_M322_2021-08-04
+./CuFluo_analysis 322 G0 /mnt/pcmoench_jungfrau_calib/data/Module_322_Calib/ pedeG0_M322_2021-08-04 CuFluoG0_M322_2021-08-04
+./CuFluo_analysis 322 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_322_Calib/ pedeHG0_M322_2021-08-04 CuFluoHG0_M322_2021-08-04
+./JFMC_CalibWriter_wBP 322
+
+M328
+./BP_analysis 328 /mnt/pcmoench_jungfrau_calib/data/Module_328_Calib/BP_M328_2021-08-04
+./CS_analysis 328 /mnt/pcmoench_jungfrau_calib/data/Module_328_Calib/ CS_M328_2021-08-04
+./CuFluo_analysis 328 G0 /mnt/pcmoench_jungfrau_calib/data/Module_328_Calib/ pedeG0_M328_2021-08-04 CuFluoG0_M328_2021-08-04
+./CuFluo_analysis 328 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_328_Calib/ pedeHG0_M328_2021-08-04 CuFluoHG0_M328_2021-08-04
+./JFMC_CalibWriter_wBP 328
+
+M332
+./BP_analysis 332 /mnt/pcmoench_jungfrau_calib/data/Module_332_Calib/BP_M332_2021-08-04
+./CS_analysis 332 /mnt/pcmoench_jungfrau_calib/data/Module_332_Calib/ CS_M332_2021-08-04
+./CuFluo_analysis 332 G0 /mnt/pcmoench_jungfrau_calib/data/Module_332_Calib/ pedeG0_M332_2021-08-04 CuFluoG0_M332_2021-08-04
+./CuFluo_analysis 332 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_332_Calib/ pedeHG0_M332_2021-08-04 CuFluoHG0_M332_2021-08-04
+./JFMC_CalibWriter_wBP 332
+
+M335
+./BP_analysis 335 /mnt/pcmoench_jungfrau_calib/data/Module_335_Calib/BP_M335_2021-08-04
+./CS_analysis 335 /mnt/pcmoench_jungfrau_calib/data/Module_335_Calib/ CS_M335_2021-08-04
+./CuFluo_analysis 335 G0 /mnt/pcmoench_jungfrau_calib/data/Module_335_FW2_2_Calib/ pedeG0_M335_FW2_2_2021-07-12 CuFluoG0_M335_FW2_2_2021-07-12
+./CuFluo_analysis 335 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_335_FW2_2_Calib/ pedeHG0_M335_FW2_2_2021-07-12 CuFluoHG0_M335_FW2_2_2021-07-12
+./JFMC_CalibWriter_wBP 335
+
+M353
+./BP_analysis 353 /mnt/pcmoench_jungfrau_calib/data/Module_353_Calib/BP_M353_2021-08-04
+./CS_analysis 353 /mnt/pcmoench_jungfrau_calib/data/Module_353_Calib/ CS_M353_2021-08-04
+./CuFluo_analysis 353 G0 /mnt/pcmoench_jungfrau_calib/data/Module_353_FW2_2_Calib/ pedeG0_M353_FW2_2_2021-07-12 CuFluoG0_M353_FW2_2_2021-07-12
+./CuFluo_analysis 353 HG0 /mnt/pcmoench_jungfrau_calib/data/Module_353_FW2_2_Calib/ pedeHG0_M353_FW2_2_2021-07-12 CuFluoHG0_M353_FW2_2_2021-07-12
+./JFMC_CalibWriter_wBP 353
+
+
+Module 262 (used for FW check 210902)
+./BP_analysis 262_FWcheck_1_1_1 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_1_1_Calib/BP_M262_FWcheck_1_1_1_2021-09-01
+./CS_analysis 262_FWcheck_1_1_1 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_1_1_Calib/ CS_M262_FWcheck_1_1_1_2021-09-01
+./CuFluo_analysis 262_FWcheck_1_1_1 G0 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_1_1_Calib/ pedeG0_M262_FWcheck_1_1_1_2021-09-01 CuFluoG0_M262_FWcheck_1_1_1_2021-09-01
+./CuFluo_analysis 262_FWcheck_1_1_1 HG0 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_1_1_Calib/ pedeHG0_M262_FWcheck_1_1_1_2021-09-01 CuFluoHG0_M262_FWcheck_1_1_1_2021-09-01
+./JFMC_CalibWriter_wBP 262_FWcheck_1_1_1
+
+./BP_analysis 262_FWcheck_1_2_rc210831 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_2_rc210831_Calib/BP_M262_FWcheck_1_2_rc210831_2021-09-02
+./CS_analysis 262_FWcheck_1_2_rc210831 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_2_rc210831_Calib/ CS_M262_FWcheck_1_2_rc210831_2021-09-02
+./CuFluo_analysis 262_FWcheck_1_2_rc210831 G0 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_2_rc210831_Calib/ pedeG0_M262_FWcheck_1_2_rc210831_2021-09-02 CuFluoG0_M262_FWcheck_1_2_rc210831_2021-09-02
+./CuFluo_analysis 262_FWcheck_1_2_rc210831 HG0 /mnt/sls_det_storage/jungfrau_calib/data/Module_262_FWcheck_1_2_rc210831_Calib/ pedeHG0_M262_FWcheck_1_2_rc210831_2021-09-02 CuFluoHG0_M262_FWcheck_1_2_rc210831_2021-09-02
+./JFMC_CalibWriter_wBP 262_FWcheck_1_2_rc210831