BP_analysis.cpp add comments on the script

BP_analysis_M431 modified
BP_analysis_M431.cpp modified
BP_scan.sh must declare module number as argument and readout speed (full_speed or half_speed) Modified the communication interface and commands to the pulser
BP_scan_both_speeds.sh Added Vb_comp 1220 at the end of the script and Modified the communication interface and commands to the pulser
CS_analysis.cpp add list of new modules for analysis
CS_analysis_JF11 modified
CS_analysis_M431.cpp modified
CS_fit.cpp add new modules in the list
CS_scan.sh must declare module number as argument and readout speed (full_speed or half_speed)
CS_scan_both_speeds.sh Added Vb_comp 1220 at the end of the script
CuFluo_exposure.sh Change HV to 60V and I to 40mA instead of 40V and 60mV+ must declare module number as argument and readout speed (full_speed or half_speed)
CuFluo_exposure_JF11.s Change HV to 60V and I to 40mA instead of 40V and 60mV
CuFluo_exposure_both_speeds.sh Change HV to 60V and I to 40mA instead of 40V and 60m
CuFluo_exposure_sc.sh Change HV to 60V and I to 40mA instead of 40V and 60m. Adjust the period to avoid losing packets
CuFluo_fit_sc.cpp Create a new file to fit Cu and noise peak fit for the storage cells data
Default_pixels_arrays.cpp Creates a default pixels system map given the module numbers of the system
Fluo_analysis_Ti_In.cpp Analysis the data for Fluorecensce target: Ti, Fe, Cu, Se, Mo, or In. The target needs to be passed as an argument.
Fluo_exposure_Ti_In.sh Fluorescence exposure with targets: Ti, Fe, Cu, Se, Mo, or In.
Fluo_fit.cpp Function to fit the fluorescence peaks for the different targets: Ti, Fe, Cu, Se, Mo, or In. The target needs to be passed as an argument.
JFMC_CalibWriter_wBP_sc.cpp change the range of the g0cutmap
Multi_filename_creator.sh Bash file to create 6 different receivers, one for each JFcalib readout board
filename_creator.sh add comments
makefile Add new objects:Fluo_analysis_Ti_In, Fluo_fit, CuFluo_fit_sc, CS_fit, BP_fit, etc...

CS_analysis.cpp

@@ -688,7 +688,115 @@ cout << " G0->G1->G2 sequence - dynamicG0" <<endl;
   scan_v6.push_back("604_fullspeed"); //jfcalib-4
   scan_v6.push_back("701_Vadym");
 
+  scan_v6.push_back("643"); //jfcalib-0
+  scan_v6.push_back("643_fullspeed"); //jfcalib-0
+  scan_v6.push_back("644"); //jfcalib-1
+  scan_v6.push_back("644_fullspeed"); //jfcalib-1
+  scan_v6.push_back("645"); //jfcalib-2
+  scan_v6.push_back("645_fullspeed"); //jfcalib-2
+  scan_v6.push_back("646"); //jfcalib-3
+  scan_v6.push_back("646_fullspeed"); //jfcalib-3
+  scan_v6.push_back("665"); //jfcalib-4
+  scan_v6.push_back("665_fullspeed"); //jfcalib-4
+  scan_v6.push_back("570"); //jfcalib-5
+  scan_v6.push_back("570_fullspeed"); //jfcalib-5
 
+  scan_v6.push_back("666"); //jfcalib-0
+  scan_v6.push_back("666_fullspeed"); //jfcalib-0
+  scan_v6.push_back("667"); //jfcalib-1
+  scan_v6.push_back("667_fullspeed"); //jfcalib-1
+  scan_v6.push_back("668"); //jfcalib-2
+  scan_v6.push_back("668_fullspeed"); //jfcalib-2
+  scan_v6.push_back("669"); //jfcalib-3
+  scan_v6.push_back("669_fullspeed"); //jfcalib-3
+  scan_v6.push_back("670"); //jfcalib-4
+  scan_v6.push_back("670_fullspeed"); //jfcalib-4
+
+  scan_v6.push_back("412"); //jfcalib-2
+  scan_v6.push_back("412_fullspeed"); //jfcalib-2
+  scan_v6.push_back("424"); //jfcalib-3
+  scan_v6.push_back("424_fullspeed"); //jfcalib-3
+  scan_v6.push_back("475"); //jfcalib-4
+  scan_v6.push_back("475_fullspeed"); //jfcalib-4
+  scan_v6.push_back("413"); //jfcalib-5
+  scan_v6.push_back("413_fullspeed"); //jfcalib-5
+
+  scan_v6.push_back("636"); //jfcalib-0
+  scan_v6.push_back("636_fullspeed"); //jfcalib-0
+  scan_v6.push_back("637"); //jfcalib-1
+  scan_v6.push_back("637_fullspeed"); //jfcalib-1
+  scan_v6.push_back("638"); //jfcalib-2
+  scan_v6.push_back("638_fullspeed"); //jfcalib-2
+  scan_v6.push_back("639"); //jfcalib-3
+  scan_v6.push_back("639_fullspeed"); //jfcalib-3
+  scan_v6.push_back("640"); //jfcalib-4
+  scan_v6.push_back("640_fullspeed"); //jfcalib-4
+  scan_v6.push_back("641"); //jfcalib-5
+  scan_v6.push_back("641_fullspeed"); //jfcalib-5
+
+  scan_v6.push_back("649"); //jfcalib-0
+  scan_v6.push_back("649_fullspeed"); //jfcalib-0
+  scan_v6.push_back("650"); //jfcalib-1
+  scan_v6.push_back("650_fullspeed"); //jfcalib-1
+  scan_v6.push_back("651"); //jfcalib-2
+  scan_v6.push_back("651_fullspeed"); //jfcalib-2
+  scan_v6.push_back("652"); //jfcalib-3
+  scan_v6.push_back("652_fullspeed"); //jfcalib-3
+  scan_v6.push_back("653"); //jfcalib-4
+  scan_v6.push_back("653_fullspeed"); //jfcalib-4
+  scan_v6.push_back("686"); //jfcalib-5
+  scan_v6.push_back("686_fullspeed"); //jfcalib-5
+
+  scan_v6.push_back("687"); //jfcalib-0
+  scan_v6.push_back("687_fullspeed"); //jfcalib-0
+  scan_v6.push_back("693"); //jfcalib-1
+  scan_v6.push_back("693_fullspeed"); //jfcalib-1
+  scan_v6.push_back("695"); //jfcalib-2
+  scan_v6.push_back("695_fullspeed"); //jfcalib-2
+  scan_v6.push_back("696"); //jfcalib-3
+  scan_v6.push_back("696_fullspeed"); //jfcalib-3
+  scan_v6.push_back("697"); //jfcalib-4
+  scan_v6.push_back("697_fullspeed"); //jfcalib-4
+  scan_v6.push_back("699"); //jfcalib-5
+  scan_v6.push_back("699_fullspeed"); //jfcalib-5
+
+  scan_v6.push_back("698"); //jfcalib-0
+  scan_v6.push_back("698_fullspeed"); //jfcalib-0
+  scan_v6.push_back("703"); //jfcalib-1
+  scan_v6.push_back("703_fullspeed"); //jfcalib-1
+  scan_v6.push_back("704"); //jfcalib-2
+  scan_v6.push_back("704_fullspeed"); //jfcalib-2
+  scan_v6.push_back("708"); //jfcalib-3
+  scan_v6.push_back("708_fullspeed"); //jfcalib-3
+  scan_v6.push_back("709"); //jfcalib-4
+  scan_v6.push_back("709_fullspeed"); //jfcalib-4
+  scan_v6.push_back("744"); //jfcalib-5
+  scan_v6.push_back("744_fullspeed"); //jfcalib-5
+
+  scan_v6.push_back("735"); //jfcalib-0
+  scan_v6.push_back("741"); //jfcalib-1
+  scan_v6.push_back("742"); //jfcalib-2
+  scan_v6.push_back("743"); //jfcalib-3
+  scan_v6.push_back("745"); //jfcalib-4
+  scan_v6.push_back("746"); //jfcalib-5
+
+  scan_v6.push_back("748"); //jfcalib-0
+  scan_v6.push_back("750"); //jfcalib-1
+  scan_v6.push_back("751"); //jfcalib-2
+  scan_v6.push_back("752"); //jfcalib-3
+  scan_v6.push_back("753"); //jfcalib-4
+  scan_v6.push_back("784"); //jfcalib-5
+
+
+  scan_v6.push_back("785"); //jfcalib-2
+  scan_v6.push_back("786"); //jfcalib-3
+  scan_v6.push_back("787"); //jfcalib-4
+
+  scan_v6.push_back("784_fullspeed"); //jfcalib-5
+  scan_v6.push_back("784_VBCOMP1000"); //jfcalib-5
+  scan_v6.push_back("784_VBCOMP1100"); //jfcalib-5
+  scan_v6.push_back("784_VBCOMP1000_fullspeed"); //jfcalib-5
+  scan_v6.push_back("784_VBCOMP1100_fullspeed"); //jfcalib-5
 
   jungfrauFile *thisfile = new jungfrauFile();