Fixed HG0 setting for JF11 (bit 1 of reg 0x5d + conf register reload)

CS script changed to start and kill receivers autoamtically.
Mudules 347 361 362 355 364 366 calibrated with these scripts

BP_scan_JF11.sh

@@ -12,30 +12,16 @@
 
 if [ "$1" == "" ] || [ $# -gt 1 ]; then
         echo "Parameter 1 is empty  specify G0 for normal, HG0 for HG0G1G2"
-        exit 0
+      return  0
 fi 
 
 sls_detector_put stop;
+sls_detector_put powerchip 0
+sleep 3
 sls_detector_put setbit 0x5d 7  
 sls_detector_put powerchip 1
 
-sleep 1 
 
-if [ "$1" == 'HG0' ]; then 
-sls_detector_put reg 0x58 0x00800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
-echo "HG0G1G2 mode"
-else
-sls_detector_put reg 0x58 0x10800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
-echo "normal mode"
-fi 
-
-sls_detector_put reg 0x7f 0xff1f
-sls_detector_put reg 0x59 0x1110
-
-
-sls_detector_put reg 0x5b 0xffffffff
-sls_detector_put reg 0x5a 0xffffffff
-sls_detector_put setbit 0x58 30 ; sls_detector_put clearbit 0x58 30;
 
 #sls_detector_put setbit 0x5d 0
 
@@ -54,6 +40,34 @@ sls_detector_put detectorip 10.1.4.9
 sls_detector_put detectormac 00:ab:be:cc:dd:e2
 #sls_detector_put configuremac 0 
 sls_detector_put speed  1
+sls_detector_put start  # this puts the chip in a known state.
+sls_detector_put stop
+
+sleep 3
+
+if [ "$1" == 'HG0' ]; then 
+sls_detector_put setbit 0x5d 0
+sls_detector_put reg 0x58 0x00800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
+echo "HG0G1G2 mode"
+else
+sls_detector_put clearbit 0x5d 0
+sls_detector_put reg 0x58 0x10800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
+echo "normal mode"
+fi 
+
+sls_detector_put reg 0x7f 0xff1f
+sls_detector_put reg 0x59 0x1110
+
+sleep 1 
+
+#sls_detector_put reg 0x5b 0xffffffff
+#sls_detector_put reg 0x5a 0xffffffff
+sleep 1 
+sls_detector_put setbit 0x58 30 ; sleep 1 ;sls_detector_put clearbit 0x58 30;
+sleep 1 
+
+
+
 
 
 #sls_detector_put reg 0x5b 0xffffffff
@@ -115,7 +129,7 @@ if [[ $input = "q" ]]; then
 fi
 
 # high voltage
-sls_detector_put vhighvoltage 130
+sls_detector_put vhighvoltage 200
 # output on
 /afs/psi.ch/project/sls_det_software/serial_control_software/minidelay/minidelay OUTP ON
 sleep 0.2
@@ -137,6 +151,10 @@ if [[ $input = "q" ]]; then
 fi
 
 
+
+
+
+
 # the scan
 for ivpulse in {10..1000..10}
 do 

CS_analysis.cpp

@@ -247,6 +247,11 @@ int main(int argc, char* argv[]) {
   scan_v6.push_back("334");
   scan_v6.push_back("337");
   scan_v6.push_back("347");
+  scan_v6.push_back("361");
+  scan_v6.push_back("362");
+  scan_v6.push_back("355");
+  scan_v6.push_back("364");
+  scan_v6.push_back("366");
 
 
   jungfrauFile *thisfile = new jungfrauFile();
@@ -274,6 +279,10 @@ int main(int argc, char* argv[]) {
   int createHistoFile = 1; //set 0 for a fit-only run
   int createPerStepHistos = 0; //debug 
 
+#ifdef JF11
+    cout << "COMPILED for JF11 !!!" << endl;
+#endif
+
   // create necessary directories with permissions drwxrwxr-x
   // data/Mxxx
   sprintf(savename,"data/M%s", module_str.c_str());
@@ -537,9 +546,9 @@ int main(int argc, char* argv[]) {
 	    adcmap_all->Fill(i%NC,i/NC,adc);
 	    gainmap_all->Fill(i%NC,i/NC,gain);
 	  }
-#ifdef JF11
+#ifdef NONSERVE //in reality it is shift in the right direction 0x5b=80000000 and 0x5a=00000000 
-	  if (((i/NC <= 255) && (((i%64)) ==  63-(j)%64)) ||
+	  if (((i/NC <= 255) && (((i%64)) ==  63-(j-1)%64)) ||
-	      ((i/NC >= 256) &&( ((-1*(i-524287))%64) == 63-(j)%64))) {  //scanning on "+-i") 
+	      ((i/NC >= 256) &&( ((-1*(i-524287))%64) == 63-(j-1)%64))) {  //scanning on "+-i") 
 #else
 	  if (((i/NC <= 255) && (i%64 == (j-1)%64)) ||
 	      ((i/NC >= 256) &&((-1*(i-524287))%64 == (j-1)%64))) {

CS_scan_JF11.sh

@@ -11,7 +11,8 @@ if [ "$1" == "" ] || [ $# -gt 1 ]; then
         exit 0
 fi 
 
-
+KILLRCV="killall ju_udp_receiver_3threads_2_0"
+$KILLRCV
 
 sls_detector_put powerchip 0
 sleep 1
@@ -20,34 +21,14 @@ sls_detector_put stop;
 sls_detector_put setbit 0x5d 7  
 sls_detector_put powerchip 1
 
-sleep 2 
+sleep 3
 
  
 
-if [ "$1" == 'HG0' ]; then 
-sls_detector_put reg 0x58 0x00800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
-echo "HG0G1G2 mode"
-else
-sls_detector_put reg 0x58 0x10800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
-echo "normal mode"
-fi 
-
-sls_detector_put reg 0x7f 0xff1f
-sls_detector_put reg 0x59 0x1110
-
-
-sls_detector_put reg 0x5b 0xffffffff
-sls_detector_put reg 0x5a 0xffffffff
-sls_detector_put setbit 0x58 30 ; sls_detector_put clearbit 0x58 30;
-
-sls_detector_put clearbit 0x5d 16
-sls_detector_put clearbit 0x5d 17
-
-
 sls_detector_put frames 640
 sls_detector_put period 0.005
 sls_detector_put exptime 0.000010
-sls_detector_put vhighvoltage 200
+sls_detector_put vhighvoltage 90
 
 # configure for receiver on mpc2012
 sls_detector_put rx_udpport 32410
@@ -56,16 +37,45 @@ sls_detector_put rx_udpmac 3C:FD:FE:A2:14:D8
 sls_detector_put detectorip 10.1.4.9
 sls_detector_put detectormac 00:ab:be:cc:dd:e2
 
+sls_detector_put speed  1
+sls_detector_put start  # this puts the chip in a known state.
+sls_detector_put stop
 
 
-echo "The receiver should be waiting for data"
+
-echo "Please check and press any key to continue, or press q to exit this script"
+
-read -n 1 -s input 
+if [ "$1" == 'HG0' ]; then 
-if [[ $input = "q" ]]; then 
+sls_detector_put setbit 0x5d 0 
-    echo "Exiting script"
+sls_detector_put reg 0x58 0x00800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
-    exit 1 
+echo "HG0G1G2 mode"
+else
+sls_detector_put clearbit 0x5d 0
+sls_detector_put reg 0x58 0x10800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31;
+echo "normal mode"
 fi 
 
+sls_detector_put reg 0x7f 0xff1f
+sls_detector_put reg 0x59 0x1110
+
+
+#sls_detector_put reg 0x5b 0xffffffff
+#sls_detector_put reg 0x5a 0xffffffff
+
+sls_detector_put setbit 0x58 30 ; sls_detector_put clearbit 0x58 30;#set colum select register to ffffffff, normal state, switch enabled. 
+
+sls_detector_put clearbit 0x5d 16
+sls_detector_put clearbit 0x5d 17
+
+
+
+
+if [ "$1" == 'HG0' ]; then 
+$TKCSHG0 &
+else
+$TKCSG0 &
+fi 
+sleep 2
+
 
 echo "recording G0 pede" 
 sls_detector_put start 
@@ -93,9 +103,9 @@ sls_detector_put clearbit 0x5d 13
 # bit 16 high bit 17 high = cal col selected with bits 26-20
 
 
-
+sls_detector_put reg 0x5b 0x80000000
-sls_detector_put reg 0x5b 0x00000001
+sls_detector_put reg 0x5a 0x00000000
-sls_detector_put reg 0x5a 0x00000001
+#sls_detector_put reg 0x5a 0x00000001
 sls_detector_put setbit 0x58 30 ; sls_detector_put clearbit 0x58 30;
 
 
@@ -216,3 +226,5 @@ sls_detector_put period 0.002
 sls_detector_put frames 1000000
 sls_detector_put clearbit 0x5d 16
 echo "Script finished"
+
+$KILLRCV

CuFluo_exposure_JF11.sh

@@ -0,0 +1,148 @@
+#!/bin/bash
+
+# to run do: bash CuFluo_exposure.sh
+
+# prerequisites:
+# - the hostname is set
+# - export PATH=/afs/psi.ch/project/sls_det_software/latest_slsDetectorPackage/build/bin:$PATH
+# - export LD_LIBRARY_PATH=/afs/psi.ch/project/sls_det_software/latest_slsDetectorPackage/build/bin:$LD_LIBRARY_PATH
+# - detector is on
+# - xray tube is on and ramped for 40 kV, 60 mA, set to Cu
+
+sls_detector_put stop #just in case
+
+sls_detector_put powerchip 0
+sleep 1
+
+sls_detector_put stop;
+sls_detector_put setbit 0x5d 7  
+sls_detector_put powerchip 1
+
+sleep 3
+
+
+sls_detector_put period 0.002
+sls_detector_put exptime 0.000010
+sls_detector_put vhighvoltage 200
+
+
+# configure for receiver on mpc2012
+sls_detector_put rx_udpport 32410
+sls_detector_put rx_udpip 10.1.4.105
+sls_detector_put rx_udpmac 3C:FD:FE:A2:14:D8
+sls_detector_put detectorip 10.1.4.9
+sls_detector_put detectormac 00:ab:be:cc:dd:e2
+sls_detector_put speed 1 
+
+KILLRCV="killall ju_udp_receiver_3threads_2_0"
+$KILLRCV
+
+sls_detector_put start
+sls_detector_put stop   #this puts the chip in a known state.
+sleep 1 
+
+#sls_detector_put reg 0x5b 0xffffffff
+#sls_detector_put reg 0x5a 0xffffffff
+sls_detector_put setbit 0x58 30 ; sls_detector_put clearbit 0x58 30; #set colum select register to ffffffff, normal state. 
+ 
+
+sls_detector_put reg 0x7f 0xff1f
+sls_detector_put reg 0x59 0x1110
+
+
+
+CLI=/afs/psi.ch/project/sls_det_software/bin/xrayClient_sl7 
+$CLI setv 40
+$CLI setc 60
+$CLI HV on
+
+
+$CLI shutter 1 off
+echo "warmin up the board"
+sls_detector_put frames 10000
+sls_detector_put start 
+sleep 21
+echo "end of board warm up"
+
+##if false; then  ##### temporary 
+sls_detector_put frames 1000
+$KILLRCV 
+sleep 1
+$TKPG0 &
+sls_detector_put stop 
+sls_detector_put clearbit 0x5d 0
+
+sls_detector_put reg 0x58 0x10800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31; #setting G0, H filter, 1 SC , 4FC 
+
+
+echo "recording G0 pede" 
+sls_detector_put start 
+sleep 3 
+# 1000 frames at 500 frames per second takes 2s
+
+echo "recording G1 pede" 
+sls_detector_put setbit 0x5d 12
+sls_detector_put start 
+sleep 3
+
+
+echo "recording G2 pede"
+sls_detector_put setbit 0x5d 13
+sls_detector_put start 
+sleep 3
+
+
+sls_detector_put clearbit 0x5d 12
+sls_detector_put clearbit 0x5d 13
+
+$KILLRCV
+echo "closed G0 pede file and open the G0 CuFluo file"
+sleep 1 
+$TKFG0 &
+
+
+sls_detector_put frames 220000
+$CLI shutter 1 on
+ sleep 1
+sls_detector_put start 
+sleep 450
+# 200k frames at 500 frames per second takes 400s
+$CLI shutter 1 off
+
+
+$KILLRCV
+echo "closed G0 CuFluo file and open HG0 pede file"
+sleep 1 
+$TKPHG0 &
+sls_detector_put setbit 0x5d 0
+sls_detector_put reg 0x58 0x00800f ; sls_detector_put setbit 0x58 31 ; sls_detector_put clearbit 0x58 31; #setting HG0, H filter, 1 SC , 4FC 
+
+
+
+sls_detector_put frames 1000
+
+echo "recording HG0 pede" 
+sls_detector_put start 
+sleep 3 
+# 1000 frames at 500 frames per second takes 2s
+
+
+$KILLRCV
+echo "closed HG0 pede file and open the HG0 CuFluo file"
+sleep 1 
+$TKFHG0 &
+
+
+sls_detector_put frames  220000 #220000
+$CLI shutter 1 on
+sleep 1
+sls_detector_put start 
+sleep 450
+# 200k frames at 500 frames per second takes 400s
+$CLI shutter 1 off
+
+
+$KILLRCV
+
+sls_detector_put clearbit 0x5d 0
+echo "Script finished"

filename_creator.sh

@@ -1,4 +1,12 @@
 #!/bin/bash
+echo "#############################################################################"
+echo "#############################################################################"
+echo "#############################################################################"
+echo "#######   REMEMBER TO USE SOURCE, NOT SH to call this script     ############"
+echo "#############################################################################"
+echo "#############################################################################"
+echo "#############################################################################"
+
 echo "printing filenames for module " $1
 echo "copy paste to execute "
 datafolder="/mnt/pcmoench_jungfrau_calib/data/Module_"$1"_Calib/"
@@ -6,11 +14,15 @@ datestring=$(date +%F)
 echo "mkdir "$datafolder 
 
 echo "./ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_ 10.1.4.105"
-echo "./ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_ 10.1.4.105"
+
 
 echo "additional lines for JF11"
-echo "./ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_HGOG1G2 10.1.4.105"                                                                               
+echo "./ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"                                                                               
-echo "./ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_HGOG1G2 10.1.4.105"
+
+export TKCSHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"
+
+export TKCSG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_ 10.1.4.105"
+
 
 
 echo "exporting the fluorescence receiver commands "
@@ -20,6 +32,9 @@ export TKPG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeG0_M"$1"_"$datestr
 export TKPHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeHG0_M"$1"_"$datestring"_ 10.1.4.105"
 
 
+
+
+
 echo "printing the analysis commands " 
 for file in $(find $datafolder -type f -exec basename {} \; | grep 000000 ); do 
     prefix=${file%_000000.dat}
@@ -62,7 +77,7 @@ echo "---------------------START OF ANALYSIS CLI commands --------------------"
 echo "----------------------------------------------------------------------"
 echo "./CuFluo_analysis "$1" G0 "$datafolder $pgofile $cgofile 
 echo "./CuFluo_analysis "$1" HG0 "$datafolder $phgofile $chgofile 
-echo "./BP_analysis "$1" "$datafolder"/"$bpfile
+echo "./BP_analysis "$1" "$datafolder$bpfile
 echo "./CS_analysis "$1" "$datafolder $csfile
 echo "./JFMC_CalibWriter_wBP" "$1"
 echo "----------------------------------------------------------------------"