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34 lines
1.1 KiB
Python
34 lines
1.1 KiB
Python
import CDTools
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from matplotlib import pyplot as plt
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from scipy import io
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# First, we load an example dataset from a .cxi file
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filename = 'example_data/AuBalls_700ms_30nmStep_3_6SS_filter.cxi'
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dataset = CDTools.datasets.Ptycho2DDataset.from_cxi(filename)
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# Next, we create a ptychography model from the dataset
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# Note that we explicitly ask for two incoherent probe modes
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model = CDTools.models.FancyPtycho.from_dataset(dataset, n_modes=2)
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# Let's do this reconstruction on the GPU, shall we?
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model.to(device='cuda')
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dataset.get_as(device='cuda')
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# Now, we run a short reconstruction from the dataset
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for loss in model.Adam_optimize(100, dataset, batch_size=50, schedule=True):
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# And we liveplot the updates to the model as they happen
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print(model.report())
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model.inspect(dataset)
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# This orthogonalizes the incoherent probe modes
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model.tidy_probes()
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# And we save out the results as a .mat file
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io.savemat('example_reconstructions/gold_balls.mat',
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model.save_results(dataset))
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# Finally, we plot the results
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model.inspect(dataset)
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model.compare(dataset)
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plt.show()
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