from CDTools.tools import losses import numpy as np import torch as t # The idea here is to use a simple numpy calculation of the various # objective functions to check the torch implementations and make sure # that any optimizations in the future don't change the results def test_amplitude_mse(): # Make some fake data data = np.random.rand(10,100,100) # And add some noise to it sim = data + 0.1 * np.random.rand(10,100,100) # and define a simple mask that needs to be broadcast mask = (np.random.rand(100,100) > 0.1).astype(bool) # First, test without a mask np_result = np.sum((np.sqrt(data) - np.sqrt(sim))**2) #np_result /= data.size torch_result = losses.amplitude_mse(t.from_numpy(data),t.from_numpy(sim)) assert np.isclose(np_result, np.take(torch_result.numpy(),0)) # Then, test with a mask np_result = np.sum(mask * (np.sqrt(data) - np.sqrt(sim))**2) #np_result /= np.count_nonzero(mask * np.ones_like(data)) torch_result = losses.amplitude_mse(t.from_numpy(data),t.from_numpy(sim), mask = t.from_numpy(mask)) assert np.isclose(np_result, np.take(torch_result.numpy(),0)) def test_intensity_mse(): # Make some fake data data = np.random.rand(10,100,100) # And add some noise to it sim = data + 0.1 * np.random.rand(10,100,100) # and define a simple mask that needs to be broadcast mask = (np.random.rand(100,100) > 0.1).astype(bool) # First, test without a mask np_result = np.sum((data - sim)**2) np_result /= data.size torch_result = losses.intensity_mse(t.from_numpy(data),t.from_numpy(sim)) assert np.isclose(np_result, np.take(torch_result.numpy(),0)) # Then, test with a mask np_result = np.sum(mask * (data - sim)**2) np_result /= np.count_nonzero(mask * np.ones_like(data)) torch_result = losses.intensity_mse(t.from_numpy(data),t.from_numpy(sim), mask = t.from_numpy(mask)) assert np.isclose(np_result, np.take(torch_result.numpy(),0)) def test_poisson_nll(): # Make some fake data data = np.random.rand(10,100,100) # And add some noise to it sim = data + 0.1 * np.random.rand(10,100,100) # and define a simple mask that needs to be broadcast mask = (np.random.rand(100,100) > 0.1).astype(bool) # First, test without a mask np_result = np.sum(sim - data * np.log(sim)) np_result /= data.size torch_result = losses.poisson_nll(t.from_numpy(data),t.from_numpy(sim), eps=0) assert np.isclose(np_result, np.take(torch_result.numpy(),0)) # Then, test with a mask np_result = np.sum(mask * (sim - data * np.log(sim))) np_result /= np.count_nonzero(mask * np.ones_like(data)) torch_result = losses.poisson_nll(t.from_numpy(data),t.from_numpy(sim), mask = t.from_numpy(mask), eps=0) assert np.isclose(np_result, np.take(torch_result.numpy(),0))