 levita_a
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4ecc782c28
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Reply to Daynes comment's and slightly loosen a tolerance in one test that has been failing
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2025-06-10 14:11:01 +02:00 |
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levita_a
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2c2f2d2d93
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Add a way to save and load the quantum efficiency masks, and add test coverage
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2025-05-13 16:05:16 +02:00 |
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levita_a
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2fd917350d
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response to Dayne's review
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2025-03-20 10:46:24 +01:00 |
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levita_a
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5b6fd79b28
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Add tests for nested_dict_to_numpy and nested_dict_to_torch
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2025-03-18 13:13:47 +01:00 |
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levita_a
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a30930b082
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Fix bug with loading h5 files including strings, and add test coverage for h5_to_nested_dict and nested_dict_to_h5
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2025-03-18 11:54:06 +01:00 |
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 allevitan
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40651eaf54
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Remove the various deprication warnings related to converting h5py datasets to arrays with np.array()
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2024-10-14 08:30:15 -04:00 |
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levita_a
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21b618d2e0
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Remove the vestigges of the polarization-dependent code. It belongs in it's own repo
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2024-08-30 14:13:36 +02:00 |
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levita_a
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47aa3c41e2
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Remove a bunch of models that really didn't belong in the main repo, and fix an issue with the RPI interaction conventions
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2024-08-30 11:53:20 +02:00 |
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levita_a
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35f140d348
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Fully replace orthogonalize_probes and update most models
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2024-07-25 17:35:48 +02:00 |
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levita_a
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943dde13e6
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Fix a remaining bug in orthogonalize_probes and also fix some lingering issues with the liveplotting for unified mode fancy ptycho
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2024-07-25 16:32:10 +02:00 |
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levita_a
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5141320c6f
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rewrite the probe orthogonalization for fancy_ptycho, and introduce a new probe orthogonalization tool in analysis. Also, update some tracking plots in fancy_ptycho
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2024-07-25 15:46:53 +02:00 |
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levita_a
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59d103f6d6
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update RPI to work with the latest data saving method, change dependence to latest pytorch for LBFGS to work on complex leaf tensors, and fix an issue with the test for the FRCs
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2024-07-01 17:16:07 +02:00 |
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Abe Levitan
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5925ee74ab
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Checked and fixed the tests, got them all running
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2024-02-12 14:55:26 -05:00 |
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Abe Levitan
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dd30f58d2d
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Start to make the lab bragg ptycho code sane, and fix the bug with probe bases when using probe fourier crop
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2024-02-11 17:32:41 -05:00 |
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levita_a
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d0a0d12521
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Add a normalize reconstruction set function
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2024-01-04 16:50:10 +01:00 |
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levita_a
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f3b6ac9056
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fix the numerical stability issue in the angular spectrum propagator code, but remove the ability to choose whether or not to include an explicit z dependence
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2023-12-04 15:29:40 +01:00 |
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levita_a
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a9e0157707
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Get tests to past and removeopt_for_fft
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2023-12-01 15:58:18 +01:00 |
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Abe Levitan
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036fa8ea2c
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remove dependency on fftpack completely
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2022-08-19 10:02:11 -07:00 |
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Abe Levitan
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883ac0175a
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Changed module name no lowercase because that's really how it should be
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2022-06-08 12:52:33 -07:00 |
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Abe Levitan
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101e969eda
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Fix the failing tests
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2022-04-18 17:18:20 -07:00 |
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Abe Levitan
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096ec4ff20
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Add analysis tools for comparing incoherent wavefields
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2021-08-11 14:23:38 -04:00 |
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Anastasiia Kutakh
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3db2d0cdf6
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.
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2021-08-05 22:55:43 -04:00 |
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Anastasiia Kutakh
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894a5c697e
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modified polarization and polarization tests
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2021-08-05 18:47:46 -04:00 |
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Abe Levitan
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3e6072acb7
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Finally remove the scourge of from __future__ import ... and remove any lingering suggestion that this code is python 2 compatible
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2021-08-05 11:08:13 -04:00 |
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Abe Levitan
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960740f39f
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Go over Anastasia's polarization tests and clean up repo a bit
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2021-08-05 10:44:32 -04:00 |
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Abe Levitan
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14114f2bd4
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Add tests to confirm that that the generation of angular spectrum propagators works with AD (and fix gasp so it indeed is)
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2021-08-04 22:32:58 -04:00 |
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Abe Levitan
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b3e45af06e
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Move the polarized ptycho dataset class back to loading data from the actual stored motor positions, and fix the test for the gaussian probe
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2021-08-04 19:43:20 -04:00 |
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Abe Levitan
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e7d7323e50
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Added a polarization dependent ptychography dataset class so we can save and load data!
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2021-07-26 14:46:02 -04:00 |
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Abe Levitan
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76e6d5efae
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get tests working
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2021-06-21 16:55:34 -04:00 |
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Abe Levitan
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8f58242efe
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Changed basic near field propagator to use the generalized function internally, and fixed band-limiting
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2021-06-18 18:06:05 -04:00 |
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Abe Levitan
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e4a521656d
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Changed how I implement the generalized propagator and (I believe) FIX the sign problems with propagation directiongit add --all!
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2021-06-18 17:41:38 -04:00 |
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Abe Levitan
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c2b8f2fe1b
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Bring all the tools to the point where they pass the tests
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2021-06-18 14:01:39 -04:00 |
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Abe Levitan
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a3765e9097
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remove all reference to cmath, get code and tests to the point where they run at least.
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2021-06-17 16:47:24 -04:00 |
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Abe Levitan
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a536e3bdb4
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Maybe last time it didn't actually commit?
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2021-01-25 13:38:38 -05:00 |
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Abe Levitan
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936b203aac
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Fix the issue with odd-sized probes & objs in RPI functions, still not fully tested
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2020-12-28 22:09:20 -05:00 |
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Abe Levitan
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32a8a8179d
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Fix an issue with the test for the poisson NLL function
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2020-12-28 21:45:01 -05:00 |
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Abe Levitan
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0d484c0ac3
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Fix sign error in generalized near field and associated test
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2020-05-07 12:13:36 -04:00 |
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Abe Levitan
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31cc45da70
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One more try to fix the off axis near field propagation
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2020-05-04 16:53:50 -04:00 |
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Abe Levitan
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9771634551
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Implement test for separate propagation and offset vectors
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2020-04-29 20:11:03 -04:00 |
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Abe Levitan
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a5b2337293
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Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
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2020-04-29 13:50:13 -04:00 |
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Abe Levitan
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d586ed914e
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Debug and test the off-axis propagation code
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2020-04-24 14:16:44 -04:00 |
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Abe Levitan
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071eebd37b
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Finish first pass of off-axis propagation, still needs to be tested off-axis
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2020-04-23 20:37:13 -04:00 |
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Abe Levitan
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ad1a2e77b7
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Update the exit_wave_geometry to handle paralellogram detectors
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2020-04-23 17:39:16 -04:00 |
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Abe Levitan
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d8486306f7
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Fix a bug with oversampling in the measurement functions
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2020-02-11 15:20:55 -05:00 |
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Abe Levitan
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69be77cc09
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Update installation instructions for simplicity and also fix the tests to reflect new usage
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2019-10-02 15:56:48 -04:00 |
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Abe Levitan
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40998908f1
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refactor datasets, wrote more docs, added one more test dataset
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2019-09-09 14:16:42 -04:00 |
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Abe Levitan
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de186592cb
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Update the docstrings on all the tools files and start laying out the docs for real
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2019-09-03 18:49:45 -04:00 |
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Abe Levitan
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1e3a98c599
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Add and build tests for a Fourier Ring Correlation method
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2019-08-17 10:39:35 -04:00 |
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Abe Levitan
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8dc997ac4c
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Change the way plots are defined for inspect in preparation for adding liveplotting
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2019-06-26 12:24:13 -04:00 |
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Abe Levitan
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a09cd4b39e
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Add ability to load/use Bragg geometry ptycho data, also add a 1D convolve to try with the terrible data from CSX
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2019-05-22 20:20:43 -04:00 |
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