 Abe Levitan
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043751a8b6
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Speed up the multislice model 5x, but probably break lots of other models doing it, so remember to clean upgit status
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2021-01-27 22:33:45 -05:00 |
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Abe Levitan
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0dec5aa9fd
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Intermediate state in optimization, improved the round interaction but not sinc yet
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2021-01-27 20:27:31 -05:00 |
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Abe Levitan
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e265c85d6b
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Touching in before I shred everything to improve efficiency
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2021-01-27 19:27:21 -05:00 |
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Abe Levitan
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a536e3bdb4
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Maybe last time it didn't actually commit?
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2021-01-25 13:38:38 -05:00 |
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Abe Levitan
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936b203aac
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Fix the issue with odd-sized probes & objs in RPI functions, still not fully tested
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2020-12-28 22:09:20 -05:00 |
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Abe Levitan
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32a8a8179d
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Fix an issue with the test for the poisson NLL function
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2020-12-28 21:45:01 -05:00 |
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Abe Levitan
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6b735a431f
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Clean up namespaces and also add a test of RPI with incoherent probes
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2020-12-28 21:32:18 -05:00 |
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Abe Levitan
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4be2af8609
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Finally finally finally add an RPI model. Makes it soooo much easier...
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2020-12-22 14:12:51 -05:00 |
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Abe Levitan
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75011eaccf
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Make tweaks to the tilt correction to work with the grazing reflection data, add basic atom-modeling for electron ptychography, and update the multislice ptycho to include a bandlimit to avoid aliasing
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2020-12-21 12:22:04 -05:00 |
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Abe Levitan
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38345da454
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Update S matrix ptychography and also update the S matrix interaction function to use a more interpretable definition of the S matrix
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2020-10-30 14:52:17 -04:00 |
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Abe Levitan
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aea0ff9bf8
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Write a multislice and s_matrix ptychography program
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2020-10-28 13:55:04 -04:00 |
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Abe Levitan
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0d484c0ac3
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Fix sign error in generalized near field and associated test
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2020-05-07 12:13:36 -04:00 |
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Abe Levitan
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31cc45da70
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One more try to fix the off axis near field propagation
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2020-05-04 16:53:50 -04:00 |
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Abe Levitan
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9771634551
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Implement test for separate propagation and offset vectors
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2020-04-29 20:11:03 -04:00 |
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Abe Levitan
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39cb345ccb
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update docs
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2020-04-29 17:56:48 -04:00 |
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Abe Levitan
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19f61ab946
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Add option for propagation vector separate from offset vector
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2020-04-29 17:55:00 -04:00 |
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Abe Levitan
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a5b2337293
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Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
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2020-04-29 13:50:13 -04:00 |
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Abe Levitan
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d586ed914e
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Debug and test the off-axis propagation code
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2020-04-24 14:16:44 -04:00 |
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Abe Levitan
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071eebd37b
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Finish first pass of off-axis propagation, still needs to be tested off-axis
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2020-04-23 20:37:13 -04:00 |
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Abe Levitan
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ad1a2e77b7
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Update the exit_wave_geometry to handle paralellogram detectors
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2020-04-23 17:39:16 -04:00 |
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Abe Levitan
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fbbecbd04c
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First work on the off-axis propagator
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2020-04-23 14:32:19 -04:00 |
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Abe Levitan
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d8486306f7
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Fix a bug with oversampling in the measurement functions
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2020-02-11 15:20:55 -05:00 |
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David Rower
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8d89a86445
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Fixing strings to avoid invalid escape sequence warning
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2020-02-03 12:00:56 -05:00 |
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Abe Levitan
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8d589eef86
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2020-01-25 19:01:11 -05:00 |
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Abe Levitan
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a1cca0dcea
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misc updates
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2020-01-25 19:01:03 -05:00 |
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David Rower
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486f58a86e
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Fixed special case in get_entry_info function, adding metadata to sample in converteR
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2020-01-23 11:53:07 -05:00 |
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David Rower
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384ced5b00
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Using $\mu instead of um for micrometers
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2019-12-11 16:19:45 -05:00 |
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David Rower
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51eae81ee2
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Fixed logical bug in get_detector_geometry, enforcing PEP 257 docstring convention of using periods
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2019-12-09 13:50:36 -05:00 |
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David Rower
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b5f78b47c7
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add_detector now flexible for both CXI and CDTools basis conventions
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2019-12-09 13:37:11 -05:00 |
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David Rower
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256142e2f6
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Fixing typo in analysis function documentation
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2019-10-10 11:53:12 -04:00 |
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Abe Levitan
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69be77cc09
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Update installation instructions for simplicity and also fix the tests to reflect new usage
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2019-10-02 15:56:48 -04:00 |
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Abe Levitan
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f58f3cc2c5
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misc small changes
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2019-10-02 13:27:32 -04:00 |
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Abe Levitan
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99d02f95cf
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Finish fleshing out the examples
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2019-09-04 18:23:34 -04:00 |
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Abe Levitan
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de186592cb
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Update the docstrings on all the tools files and start laying out the docs for real
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2019-09-03 18:49:45 -04:00 |
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Abe Levitan
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1e3a98c599
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Add and build tests for a Fourier Ring Correlation method
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2019-08-17 10:39:35 -04:00 |
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Abe Levitan
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f769806e68
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Lots of small changes
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2019-08-15 11:14:20 -04:00 |
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Abe Levitan
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fe1f4db0c6
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Consistently get Bragg/specular geometry implemented across both models/datasets and dataloaders
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2019-07-01 15:02:14 -04:00 |
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Abe Levitan
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6b50e41614
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Add some sensible examples
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2019-06-28 16:01:53 -04:00 |
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Abe Levitan
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a09cd4b39e
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Add ability to load/use Bragg geometry ptycho data, also add a 1D convolve to try with the terrible data from CSX
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2019-05-22 20:20:43 -04:00 |
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Abe Levitan
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6471a17c34
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2019-05-22 13:00:56 -04:00 |
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Abe Levitan
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2a2b6ee960
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Add tool to restrict object support, plot a nanomap, and include mask on SHARP-style initialization
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2019-05-22 13:00:52 -04:00 |
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Maddie Cain
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57f353b1e1
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2019-05-15 12:44:15 -04:00 |
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Maddie Cain
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a65a3867c0
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ensure basis vectors are in the right wrong format
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2019-05-15 12:43:40 -04:00 |
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Maddie Cain
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4896d7354a
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fixed ePIE bug and shortened inspect function
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2019-05-12 22:58:37 -04:00 |
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Abe Levitan
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22899288fc
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Add probe propagation with initialization as a base feature to fancy_ptycho, and fix the test for orthogonalize_probes
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2019-05-03 12:30:53 -04:00 |
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Abe Levitan
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26de79ca92
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Include ability to read background from a .cxi file and include it in SHARP-style initialization
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2019-04-25 16:06:59 -04:00 |
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Abe Levitan
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d0a56c2d99
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Adding catch-all plotting tools and saving tools to models
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2019-04-25 15:46:36 -04:00 |
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Abe Levitan
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1104f338d1
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Test the synthesize image functionality
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2019-04-25 13:53:35 -04:00 |
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Abe Levitan
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bc9c1c466c
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Refactor the PRTF calculation, fix a small bug creating a slight offset in the frequency labels, and write a test
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2019-04-25 13:32:37 -04:00 |
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Abe Levitan
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9a35d44689
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Update the standardization to work with incoherent probes and move over the synthesis
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2019-04-24 22:01:09 -04:00 |
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