 Abe Levitan
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0d91272766
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Create a base version of the models
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2022-02-15 15:16:07 -05:00 |
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Abe Levitan
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c66de47f95
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Misc updates
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2022-02-01 17:04:46 -05:00 |
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Abe Levitan
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2c8f60a11c
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Add a tool to account for the probe position movement on the detector to fancy_ptycho
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2021-11-12 15:41:17 -05:00 |
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Abe Levitan
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ebafc44acb
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Minor tweak to initializations
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2021-08-25 17:06:30 -04:00 |
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Abe Levitan
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f84e441843
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Standardize the way that data is copied when models are created
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2021-08-05 16:21:58 -04:00 |
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Abe Levitan
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3e6072acb7
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Finally remove the scourge of from __future__ import ... and remove any lingering suggestion that this code is python 2 compatible
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2021-08-05 11:08:13 -04:00 |
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Anastasiia Kutakh
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6924ce58fe
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changed polarization and polarized_fancy_ptycho interaction
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2021-07-29 02:59:37 -04:00 |
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Abe Levitan
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8ddcc7683f
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Start cleaning up the repo and tidying up the example scripts
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2021-06-28 11:14:41 -04:00 |
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Abe Levitan
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76e6d5efae
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get tests working
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2021-06-21 16:55:34 -04:00 |
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Abe Levitan
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a3765e9097
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remove all reference to cmath, get code and tests to the point where they run at least.
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2021-06-17 16:47:24 -04:00 |
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Abe Levitan
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188a685503
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Fix a bug in multislice where it doesn't work when prevent_alias is set to True
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2021-06-02 14:48:57 -04:00 |
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Abe Levitan
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2854a872ee
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Make a program to visualize the shot to shot fluctuations when using the unified mode model
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2021-04-08 16:28:24 -04:00 |
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Abe Levitan
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2774953c2a
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Fix a bug in the incoherent probe mode update
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2021-03-15 18:55:05 -04:00 |
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Abe Levitan
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f6f8084978
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Added unified modes to multislice, added units to fancy_ptycho, and added more sane normalization option (for reconstructions) to unified mode models
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2021-03-11 17:01:55 -05:00 |
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Abe Levitan
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d664bf351b
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Remove the original, worse unified mode model, and update the plotting functions to handle stacks of images, very helpful for multislice and also multi-mode models
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2021-02-04 18:55:55 -05:00 |
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Abe Levitan
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fdca857046
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make some tweaks to how the multislice works
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2021-01-30 09:22:15 -05:00 |
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Abe Levitan
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a536e3bdb4
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Maybe last time it didn't actually commit?
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2021-01-25 13:38:38 -05:00 |
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Abe Levitan
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6b735a431f
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Clean up namespaces and also add a test of RPI with incoherent probes
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2020-12-28 21:32:18 -05:00 |
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Abe Levitan
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4be2af8609
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Finally finally finally add an RPI model. Makes it soooo much easier...
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2020-12-22 14:12:51 -05:00 |
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Abe Levitan
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75011eaccf
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Make tweaks to the tilt correction to work with the grazing reflection data, add basic atom-modeling for electron ptychography, and update the multislice ptycho to include a bandlimit to avoid aliasing
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2020-12-21 12:22:04 -05:00 |
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Abe Levitan
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aea0ff9bf8
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Write a multislice and s_matrix ptychography program
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2020-10-28 13:55:04 -04:00 |
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Abe Levitan
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a1cca0dcea
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misc updates
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2020-01-25 19:01:03 -05:00 |
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Abe Levitan
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f58f3cc2c5
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misc small changes
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2019-10-02 13:27:32 -04:00 |
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Abe Levitan
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40998908f1
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refactor datasets, wrote more docs, added one more test dataset
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2019-09-09 14:16:42 -04:00 |
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Abe Levitan
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f769806e68
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Lots of small changes
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2019-08-15 11:14:20 -04:00 |
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Abe Levitan
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fe1f4db0c6
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Consistently get Bragg/specular geometry implemented across both models/datasets and dataloaders
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2019-07-01 15:02:14 -04:00 |
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Abe Levitan
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6b50e41614
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Add some sensible examples
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2019-06-28 16:01:53 -04:00 |
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Abe Levitan
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a2a07055c4
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Add sim-to-dataset capability
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2019-06-27 17:26:36 -04:00 |
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Abe Levitan
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c437f95a8e
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Loveplotting!
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2019-06-26 13:25:54 -04:00 |
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Abe Levitan
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8dc997ac4c
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Change the way plots are defined for inspect in preparation for adding liveplotting
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2019-06-26 12:24:13 -04:00 |
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Abe Levitan
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a09cd4b39e
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Add ability to load/use Bragg geometry ptycho data, also add a 1D convolve to try with the terrible data from CSX
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2019-05-22 20:20:43 -04:00 |
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Abe Levitan
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2a2b6ee960
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Add tool to restrict object support, plot a nanomap, and include mask on SHARP-style initialization
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2019-05-22 13:00:52 -04:00 |
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Abe Levitan
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22899288fc
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Add probe propagation with initialization as a base feature to fancy_ptycho, and fix the test for orthogonalize_probes
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2019-05-03 12:30:53 -04:00 |
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Abe Levitan
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26de79ca92
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Include ability to read background from a .cxi file and include it in SHARP-style initialization
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2019-04-25 16:06:59 -04:00 |
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Abe Levitan
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d0a56c2d99
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Adding catch-all plotting tools and saving tools to models
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2019-04-25 15:46:36 -04:00 |
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Abe Levitan
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bf8dbe086a
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Add the frantic work over the past few weeks, next challenge is to organize and test it
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2019-04-23 14:50:16 -04:00 |
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