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231 Commits 9 Branches 6 Tags
c1663fa964d2af86496151ea0bade25301a24ecf
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93 Commits
Author SHA1 Message Date
Abe Levitan c1663fa964 Add some tools for datasets to store input intensity measurements 2022-02-22 20:36:50 -05:00
Abe Levitan 0d91272766 Create a base version of the models 2022-02-15 15:16:07 -05:00
Abe Levitan c66de47f95 Misc updates 2022-02-01 17:04:46 -05:00
Abe Levitan 2c8f60a11c Add a tool to account for the probe position movement on the detector to fancy_ptycho 2021-11-12 15:41:17 -05:00
Abe Levitan 6d4cf4067c Merge branch 'polarization' of github.mit.edu:Scattering/CDTools into polarization 2021-10-26 20:42:23 -04:00
Abe Levitan 1a214b76e4 Small changes to fix stuff 2021-10-26 20:40:48 -04:00
Anastasiia Kutakh 950fe9bdca Merge branch 'polarization' of https://github.mit.edu/Scattering/CDTools into polarization 2021-08-27 12:35:29 -04:00
Anastasiia Kutakh d48624bf23 . 2021-08-27 12:35:06 -04:00
Abe Levitan 37a97a9618 Fix the input polarizer issue 2021-08-27 11:46:14 -04:00
Abe Levitan cd6a811a63 Merge branch 'polarization' of github.mit.edu:Scattering/CDTools into polarization 2021-08-25 17:06:34 -04:00
Abe Levitan ebafc44acb Minor tweak to initializations 2021-08-25 17:06:30 -04:00
Anastasiia Kutakh e7c15273fa . 2021-08-24 11:31:35 -04:00
Anastasiia Kutakh d0bca7633b . 2021-08-24 01:26:11 -04:00
Anastasiia Kutakh aadd720f1e . 2021-08-20 23:46:24 -04:00
Anastasiia Kutakh 53742d0245 . 2021-08-20 21:45:27 -04:00
Anastasiia Kutakh 8493a3fb41 . 2021-08-20 17:19:28 -04:00
Anastasiia Kutakh 540cc997b5 . 2021-08-20 11:52:23 -04:00
Abe Levitan 998245ae4a '.' 2021-08-13 14:17:12 -04:00
Anastasiia Kutakh 7daabf8409 . 2021-08-10 15:29:33 -04:00
Abe Levitan f84e441843 Standardize the way that data is copied when models are created 2021-08-05 16:21:58 -04:00
Abe Levitan faceb139d3 Add a function to save out the currently open plots 2021-08-05 14:39:53 -04:00
Abe Levitan 3e6072acb7 Finally remove the scourge of from __future__ import ... and remove any lingering suggestion that this code is python 2 compatible 2021-08-05 11:08:13 -04:00
Anastasiia Kutakh daeac7e983 . 2021-08-04 09:39:49 -04:00
Anastasiia Kutakh 9f580102ba . 2021-08-04 00:09:54 -04:00
Anastasiia Kutakh 35c1643721 . 2021-08-04 00:04:29 -04:00
Anastasiia Kutakh bf4db86ad4 . 2021-08-03 23:59:23 -04:00
Anastasiia Kutakh 21036f625a . 2021-08-03 23:52:19 -04:00
Anastasiia Kutakh 8c22c99d66 . 2021-08-03 13:57:25 -04:00
Anastasiia Kutakh 709c3f398d . 2021-07-31 21:33:14 -04:00
Anastasiia Kutakh 026f1c2b0b . 2021-07-31 21:26:26 -04:00
Anastasiia Kutakh 070622a9e1 . 2021-07-30 00:32:23 -04:00
Anastasiia Kutakh 6924ce58fe changed polarization and polarized_fancy_ptycho interaction 2021-07-29 02:59:37 -04:00
Abe Levitan a4d70bc375 Update polarized_fancy_ptycho.py 2021-07-28 17:14:41 -04:00
Abe Levitan a3e9ebebf5 Some small notes in the code 2021-07-28 17:05:55 -04:00
Abe Levitan 3a68fd35b2 Add the required import statements 2021-07-28 15:38:33 -04:00
Anastasiia Kutakh d067dcac9d not tested/debugged yet 2021-07-28 07:04:22 -04:00
Abe Levitan 53cd966c33 Update the RPI model and clean up the examples section 2021-07-06 13:58:00 -04:00
Abe Levitan 8ddcc7683f Start cleaning up the repo and tidying up the example scripts 2021-06-28 11:14:41 -04:00
Abe Levitan 76e6d5efae get tests working 2021-06-21 16:55:34 -04:00
Abe Levitan a3765e9097 remove all reference to cmath, get code and tests to the point where they run at least. 2021-06-17 16:47:24 -04:00
Abe Levitan 188a685503 Fix a bug in multislice where it doesn't work when prevent_alias is set to True 2021-06-02 14:48:57 -04:00
Abe Levitan 2854a872ee Make a program to visualize the shot to shot fluctuations when using the unified mode model 2021-04-08 16:28:24 -04:00
Abe Levitan 2774953c2a Fix a bug in the incoherent probe mode update 2021-03-15 18:55:05 -04:00
Abe Levitan f6f8084978 Added unified modes to multislice, added units to fancy_ptycho, and added more sane normalization option (for reconstructions) to unified mode models 2021-03-11 17:01:55 -05:00
Abe Levitan 6b7a0701a6 Update plotting functions to deal better with images that have multiple layers 2021-02-26 15:31:51 -05:00
Abe Levitan cea860bdf9 Fix an issue with unified_mode_ptycho not working in model.compare, and fix colorbars for model.compare 2021-02-05 12:30:29 -05:00
Abe Levitan d664bf351b Remove the original, worse unified mode model, and update the plotting functions to handle stacks of images, very helpful for multislice and also multi-mode models 2021-02-04 18:55:55 -05:00
Abe Levitan fdca857046 make some tweaks to how the multislice works 2021-01-30 09:22:15 -05:00
Abe Levitan 043751a8b6 Speed up the multislice model 5x, but probably break lots of other models doing it, so remember to clean upgit status 2021-01-27 22:33:45 -05:00
Abe Levitan 0dec5aa9fd Intermediate state in optimization, improved the round interaction but not sinc yet 2021-01-27 20:27:31 -05:00