 Abe Levitan
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a3e9ebebf5
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Some small notes in the code
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2021-07-28 17:05:55 -04:00 |
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Abe Levitan
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3a68fd35b2
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Add the required import statements
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2021-07-28 15:38:33 -04:00 |
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Anastasiia Kutakh
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d067dcac9d
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not tested/debugged yet
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2021-07-28 07:04:22 -04:00 |
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Abe Levitan
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53cd966c33
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Update the RPI model and clean up the examples section
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2021-07-06 13:58:00 -04:00 |
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Abe Levitan
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8ddcc7683f
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Start cleaning up the repo and tidying up the example scripts
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2021-06-28 11:14:41 -04:00 |
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Abe Levitan
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76e6d5efae
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get tests working
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2021-06-21 16:55:34 -04:00 |
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Abe Levitan
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a3765e9097
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remove all reference to cmath, get code and tests to the point where they run at least.
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2021-06-17 16:47:24 -04:00 |
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Abe Levitan
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188a685503
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Fix a bug in multislice where it doesn't work when prevent_alias is set to True
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2021-06-02 14:48:57 -04:00 |
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Abe Levitan
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2854a872ee
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Make a program to visualize the shot to shot fluctuations when using the unified mode model
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2021-04-08 16:28:24 -04:00 |
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Abe Levitan
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2774953c2a
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Fix a bug in the incoherent probe mode update
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2021-03-15 18:55:05 -04:00 |
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Abe Levitan
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f6f8084978
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Added unified modes to multislice, added units to fancy_ptycho, and added more sane normalization option (for reconstructions) to unified mode models
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2021-03-11 17:01:55 -05:00 |
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Abe Levitan
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6b7a0701a6
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Update plotting functions to deal better with images that have multiple layers
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2021-02-26 15:31:51 -05:00 |
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Abe Levitan
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cea860bdf9
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Fix an issue with unified_mode_ptycho not working in model.compare, and fix colorbars for model.compare
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2021-02-05 12:30:29 -05:00 |
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Abe Levitan
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d664bf351b
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Remove the original, worse unified mode model, and update the plotting functions to handle stacks of images, very helpful for multislice and also multi-mode models
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2021-02-04 18:55:55 -05:00 |
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Abe Levitan
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fdca857046
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make some tweaks to how the multislice works
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2021-01-30 09:22:15 -05:00 |
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Abe Levitan
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043751a8b6
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Speed up the multislice model 5x, but probably break lots of other models doing it, so remember to clean upgit status
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2021-01-27 22:33:45 -05:00 |
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Abe Levitan
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0dec5aa9fd
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Intermediate state in optimization, improved the round interaction but not sinc yet
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2021-01-27 20:27:31 -05:00 |
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Abe Levitan
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e265c85d6b
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Touching in before I shred everything to improve efficiency
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2021-01-27 19:27:21 -05:00 |
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Abe Levitan
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3acd1ece3c
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Make it so it doesn't require a crazy amount of memory
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2021-01-26 22:46:15 -05:00 |
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Abe Levitan
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a536e3bdb4
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Maybe last time it didn't actually commit?
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2021-01-25 13:38:38 -05:00 |
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Abe Levitan
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6b735a431f
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Clean up namespaces and also add a test of RPI with incoherent probes
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2020-12-28 21:32:18 -05:00 |
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Abe Levitan
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4be2af8609
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Finally finally finally add an RPI model. Makes it soooo much easier...
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2020-12-22 14:12:51 -05:00 |
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Abe Levitan
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75011eaccf
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Make tweaks to the tilt correction to work with the grazing reflection data, add basic atom-modeling for electron ptychography, and update the multislice ptycho to include a bandlimit to avoid aliasing
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2020-12-21 12:22:04 -05:00 |
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Abe Levitan
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38345da454
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Update S matrix ptychography and also update the S matrix interaction function to use a more interpretable definition of the S matrix
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2020-10-30 14:52:17 -04:00 |
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Abe Levitan
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aea0ff9bf8
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Write a multislice and s_matrix ptychography program
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2020-10-28 13:55:04 -04:00 |
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Abe Levitan
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31cc45da70
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One more try to fix the off axis near field propagation
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2020-05-04 16:53:50 -04:00 |
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Abe Levitan
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19f61ab946
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Add option for propagation vector separate from offset vector
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2020-04-29 17:55:00 -04:00 |
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Abe Levitan
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a5b2337293
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Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
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2020-04-29 13:50:13 -04:00 |
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Abe Levitan
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fbbecbd04c
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First work on the off-axis propagator
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2020-04-23 14:32:19 -04:00 |
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Abe Levitan
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8d589eef86
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2020-01-25 19:01:11 -05:00 |
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Abe Levitan
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a1cca0dcea
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misc updates
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2020-01-25 19:01:03 -05:00 |
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David Rower
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7a243842b9
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Fixing wrong theta convention in converter; fixing simple_ptycho bug in dictionary syntax
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2020-01-23 17:20:25 -05:00 |
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Abe Levitan
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120e23ef15
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Write the model and dataset tutorials, update the dependencies, and various small bug fixes
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2019-10-04 16:53:22 -04:00 |
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Abe Levitan
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f58f3cc2c5
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misc small changes
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2019-10-02 13:27:32 -04:00 |
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Abe Levitan
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185fde27a0
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More work on documentation
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2019-09-11 17:56:54 -04:00 |
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Abe Levitan
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40998908f1
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refactor datasets, wrote more docs, added one more test dataset
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2019-09-09 14:16:42 -04:00 |
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Abe Levitan
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e80bf05f25
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Further improve docs layout and add unfinished ptycho models to repo
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2019-09-04 16:27:55 -04:00 |
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Abe Levitan
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de186592cb
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Update the docstrings on all the tools files and start laying out the docs for real
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2019-09-03 18:49:45 -04:00 |
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Abe Levitan
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f769806e68
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Lots of small changes
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2019-08-15 11:14:20 -04:00 |
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Abe Levitan
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06ce14fac9
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Fixed a small bug
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2019-07-01 15:27:57 -04:00 |
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Abe Levitan
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fe1f4db0c6
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Consistently get Bragg/specular geometry implemented across both models/datasets and dataloaders
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2019-07-01 15:02:14 -04:00 |
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Abe Levitan
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6b50e41614
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Add some sensible examples
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2019-06-28 16:01:53 -04:00 |
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Abe Levitan
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a2a07055c4
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Add sim-to-dataset capability
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2019-06-27 17:26:36 -04:00 |
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Abe Levitan
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f769f9e7ab
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Start moving the example code to datasets which can fit on the git server
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2019-06-26 17:47:09 -04:00 |
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Abe Levitan
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c246a5ed96
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Added a diffraction pattern browser
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2019-06-26 17:26:25 -04:00 |
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Abe Levitan
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c437f95a8e
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Loveplotting!
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2019-06-26 13:25:54 -04:00 |
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Abe Levitan
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8dc997ac4c
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Change the way plots are defined for inspect in preparation for adding liveplotting
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2019-06-26 12:24:13 -04:00 |
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Abe Levitan
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a09cd4b39e
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Add ability to load/use Bragg geometry ptycho data, also add a 1D convolve to try with the terrible data from CSX
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2019-05-22 20:20:43 -04:00 |
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Abe Levitan
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6471a17c34
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2019-05-22 13:00:56 -04:00 |
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Abe Levitan
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2a2b6ee960
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Add tool to restrict object support, plot a nanomap, and include mask on SHARP-style initialization
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2019-05-22 13:00:52 -04:00 |
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