 Abe Levitan
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22899288fc
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Add probe propagation with initialization as a base feature to fancy_ptycho, and fix the test for orthogonalize_probes
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2019-05-03 12:30:53 -04:00 |
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Abe Levitan
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26de79ca92
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Include ability to read background from a .cxi file and include it in SHARP-style initialization
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2019-04-25 16:06:59 -04:00 |
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Abe Levitan
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d0a56c2d99
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Adding catch-all plotting tools and saving tools to models
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2019-04-25 15:46:36 -04:00 |
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Abe Levitan
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1104f338d1
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Test the synthesize image functionality
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2019-04-25 13:53:35 -04:00 |
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Abe Levitan
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bc9c1c466c
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Refactor the PRTF calculation, fix a small bug creating a slight offset in the frequency labels, and write a test
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2019-04-25 13:32:37 -04:00 |
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Abe Levitan
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9a35d44689
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Update the standardization to work with incoherent probes and move over the synthesis
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2019-04-24 22:01:09 -04:00 |
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Abe Levitan
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374683fe35
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Move the standardizing tool over to analysis and write a test for it
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2019-04-24 19:23:51 -04:00 |
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Abe Levitan
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75b257f816
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Add a reverse tool to calculate translations from pixel space offsets
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2019-04-24 15:51:28 -04:00 |
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Abe Levitan
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6035841874
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2019-04-24 15:29:15 -04:00 |
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Abe Levitan
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d4576d1939
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Write up the tests and fix a bug in the probe orthogonalization
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2019-04-24 15:29:07 -04:00 |
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Maddie Cain
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84ac2cc058
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added ePIE
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2019-04-24 12:26:32 -04:00 |
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Maddie Cain
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fcf17d9355
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2019-04-24 12:25:42 -04:00 |
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Abe Levitan
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bfaf2bf3ac
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Add a tool for loading dark images from cxi files
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2019-04-24 11:29:49 -04:00 |
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Abe Levitan
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34cf555a3c
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Fix an inconsistency in the incoherent sum measurement and update the test
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2019-04-24 11:13:13 -04:00 |
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Maddie Cain
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6a670a82af
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untested ptychography work
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2019-04-24 09:06:50 -04:00 |
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Abe Levitan
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bf8dbe086a
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Add the frantic work over the past few weeks, next challenge is to organize and test it
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2019-04-23 14:50:16 -04:00 |
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Maddie Cain
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2a717d9133
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fixed bug in centroid and began adding to simple_ptycho
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2019-04-18 01:01:37 -04:00 |
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Abe Levitan
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ace81cc66d
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Add tools to calculate subpixel shifts. Possible improvements still on the table
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2019-04-10 12:20:39 -04:00 |
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Abe Levitan
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91f11643e9
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Make some tweaks to the simple ptycho model
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2019-04-10 10:25:05 -04:00 |
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Maddie Cain
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168096abbe
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added 1d scatter plot and test
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2019-04-08 04:03:15 -04:00 |
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Maddie Cain
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e76b18b38f
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2019-04-08 03:56:41 -04:00 |
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Maddie Cain
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8aeb25bb41
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added plotting capabilities and tests (note: no colorbar yet for colorized plt)
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2019-04-08 03:56:23 -04:00 |
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Abe Levitan
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63c55582ec
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First pass at models, including the model for classic Ptychography
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2019-04-05 16:41:21 -04:00 |
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Abe Levitan
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d0897f1dff
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Add skeleton for centroid functions
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2019-04-05 10:19:39 -04:00 |
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Abe Levitan
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f1ed810514
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Add a SHARP style probe guess functionality
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2019-04-04 23:26:36 -04:00 |
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Abe Levitan
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fdd100cd1c
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Finish building and testing the gaussian probe guess from a dataset
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2019-04-04 17:03:23 -04:00 |
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Abe Levitan
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31252986d8
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Change propagation to preserve norm despite the extra cost, and generalize the gaussian initializer
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2019-04-04 15:28:31 -04:00 |
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Abe Levitan
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4e1d9f6c5c
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Write the centroid finding function
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2019-04-01 18:59:20 -04:00 |
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Abe Levitan
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59e1a88e97
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Add initialization for object size
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2019-04-01 17:16:15 -04:00 |
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Abe Levitan
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3248a3b46e
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Add tool to convert from real space to pixel space translations
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2019-04-01 16:51:36 -04:00 |
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Abe Levitan
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b8bdcfeb44
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minor tweak to allow for addition of padding
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2019-04-01 16:17:52 -04:00 |
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Abe Levitan
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525ab7e91b
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Add a tool to correctly define the wavefield arrays for non-centered detectors
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2019-04-01 16:14:49 -04:00 |
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Abe Levitan
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ec74e1aa5f
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Add the ability for datasets to change what device they output to even if data remains stored on cpu
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2019-04-01 09:31:33 -04:00 |
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Abe Levitan
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668f81ab38
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Update the interactions, propagators, and measurements to accept both single wavefields and stacks of wavefields, update the tests as well
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2019-04-01 00:18:32 -04:00 |
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Abe Levitan
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d49f8a1c04
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Write and test the first set of measurements
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2019-03-28 20:15:03 -04:00 |
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Abe Levitan
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1e43c095d1
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Fix some bugs in the propagators and initializers, write the tests for the angular spectrum propagator
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2019-03-28 19:30:40 -04:00 |
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Abe Levitan
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bec571e0c4
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Add the first two interactions for ptychography
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2019-03-28 17:18:40 -04:00 |
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Abe Levitan
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89f96b459e
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Fix an issue with the modulus projector, update test to catch that issue
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2019-03-28 15:56:48 -04:00 |
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Abe Levitan
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7f31d402ff
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Update the projectors to be compatible with AD
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2019-03-28 00:49:33 -04:00 |
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Maddie Cain
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5c588da8ee
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dealt with masking in modulus
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2019-03-27 23:53:03 -04:00 |
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Maddie Cain
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cbb8d36187
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fixed merge conflict
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2019-03-27 21:59:05 -04:00 |
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Maddie Cain
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f1c3df3545
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added projectors, propagators
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2019-03-27 21:57:23 -04:00 |
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Abe Levitan
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bad7542271
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Finish writing the Dataset classes with loading, and write up all the tests
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2019-03-27 19:03:44 -04:00 |
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Maddie Cain
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b2a826b197
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add projectors, propagators, and initializers
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2019-03-27 01:34:40 -04:00 |
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Abe Levitan
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78d13a3f67
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Start work on the datasets feature to finish the data loading and saving aspect of the project
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2019-03-25 22:31:11 -04:00 |
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Abe Levitan
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7c117943ed
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Barebones change of the cxi explorer to a script, break plotting for now
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2019-03-25 19:25:58 -04:00 |
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Abe Levitan
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c73caa3a06
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Write the data saving tools and finish the data tests
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2019-03-25 19:11:02 -04:00 |
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Abe Levitan
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b3b953fc8a
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First pass at the data loading + simple tests, still need to do data saving tools
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2019-03-24 18:00:24 -04:00 |
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Abe Levitan
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f08a77d6da
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Finish the tests for the losses
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2019-03-22 22:33:52 -04:00 |
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Abe Levitan
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595e84cd01
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Start putting together the losses
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2019-03-22 19:59:40 -04:00 |
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