fix: add pytest-redis to a list of dev deps

.copier-answers.yml

@@ -1,9 +0,0 @@
-# Do not edit this file!
-# It is needed to track the repo template version, and editing may break things.
-# This file will be overwritten by copier on template updates.
-
-_commit: v1.2.8
-_src_path: https://github.com/bec-project/plugin_copier_template.git
-make_commit: false
-project_name: debye_bec
-widget_plugins_input: []

.git_hooks/post-commit

@@ -1,3 +0,0 @@
-SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
-semantic-release changelog -D version_variable=$SCRIPT_DIR/../../semantic_release/__init__.py:__version__
-semantic-release version -D version_variable=$SCRIPT_DIR/../../semantic_release/__init__.py:__version__

.git_hooks/pre-commit

@@ -1,3 +0,0 @@
-black --line-length=100 $(git diff --cached --name-only --diff-filter=ACM -- '*.py')
-isort --line-length=100 --profile=black --multi-line=3 --trailing-comma $(git diff --cached --name-only --diff-filter=ACM -- '*.py')
-git add $(git diff --cached --name-only --diff-filter=ACM -- '*.py')

.gitea/workflows/ci.yml

@@ -1,102 +0,0 @@
-name: CI for debye_bec
-on:
-  push:
-  pull_request:
-  workflow_dispatch:
-    inputs:
-      BEC_WIDGETS_BRANCH:
-        description: "Branch of BEC Widgets to install"
-        required: false
-        type: string
-        default: "main"
-      BEC_CORE_BRANCH:
-        description: "Branch of BEC Core to install"
-        required: false
-        type: string
-        default: "main"
-      OPHYD_DEVICES_BRANCH:
-        description: "Branch of Ophyd Devices to install"
-        required: false
-        type: string
-        default: "main"
-      BEC_PLUGIN_REPO_BRANCH:
-        description: "Branch of the BEC Plugin Repository to install"
-        required: false
-        type: string
-        default: "main"
-      PYTHON_VERSION:
-        description: "Python version to use"
-        required: false
-        type: string
-        default: "3.12"
-
-permissions:
-  pull-requests: write
-
-jobs:
-  test:
-    runs-on: ubuntu-latest
-    env:
-      QTWEBENGINE_DISABLE_SANDBOX: 1
-      QT_QPA_PLATFORM: "offscreen"
-
-    steps:
-      - name: Setup Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: "${{ inputs.PYTHON_VERSION || '3.12' }}"
-
-      - name: Checkout BEC Plugin Repository
-        uses: actions/checkout@v4
-        with:
-          repository: bec/debye_bec
-          ref: "${{ inputs.BEC_PLUGIN_REPO_BRANCH || github.head_ref || github.sha }}"
-          path: ./debye_bec
-
-      - name: Lint for merge conflicts from template updates
-        shell: bash
-        # Find all Copier conflicts except this line
-        run: '! grep -r "<<<<<<< before updating" | grep -v "grep -r \"<<<<<<< before updating"'
-
-      - name: Checkout BEC Core
-        uses: actions/checkout@v4
-        with:
-          repository: bec/bec
-          ref: "${{ inputs.BEC_CORE_BRANCH || 'main' }}"
-          path: ./bec
-
-      - name: Checkout Ophyd Devices
-        uses: actions/checkout@v4
-        with:
-          repository: bec/ophyd_devices
-          ref: "${{ inputs.OPHYD_DEVICES_BRANCH || 'main' }}"
-          path: ./ophyd_devices
-
-      - name: Checkout BEC Widgets
-        uses: actions/checkout@v4
-        with:
-          repository: bec/bec_widgets
-          ref: "${{ inputs.BEC_WIDGETS_BRANCH || 'main' }}"
-          path: ./bec_widgets
-
-      - name: Install dependencies
-        shell: bash
-        run: |
-          sudo apt-get update
-          sudo apt-get install -y libgl1 libegl1 x11-utils libxkbcommon-x11-0 libdbus-1-3 xvfb
-          sudo apt-get -y install libnss3 libxdamage1 libasound2t64 libatomic1 libxcursor1
-
-      - name: Install Python dependencies
-        shell: bash
-        run: |
-          pip install uv
-          uv pip install --system -e ./ophyd_devices
-          uv pip install --system -e ./bec/bec_lib[dev]
-          uv pip install --system -e ./bec/bec_ipython_client
-          uv pip install --system -e ./bec/bec_server[dev]
-          uv pip install --system -e ./bec_widgets[dev,pyside6]
-          uv pip install --system -e ./debye_bec
-
-      - name: Run Pytest with Coverage
-        id: coverage
-        run: pytest --random-order --cov=./debye_bec --cov-config=./debye_bec/pyproject.toml --cov-branch --cov-report=xml --no-cov-on-fail ./debye_bec/tests/ || test $? -eq 5

.gitea/workflows/create_update_pr.yml

@@ -1,62 +0,0 @@
-name: Create template upgrade PR for debye_bec
-on:
-  workflow_dispatch:
-
-permissions:
-  pull-requests: write
-
-jobs:
-  create_update_branch_and_pr:
-    runs-on: ubuntu-latest
-    permissions:
-      contents: write
-      pull-requests: write
-
-    steps:
-      - name: Setup Python
-        uses: actions/setup-python@v5
-        with:
-          python-version: '3.12'
-    
-      - name: Install tools
-        run: |
-          pip install copier PySide6
-
-      - name: Checkout
-        uses: actions/checkout@v4
-    
-      - name: Perform update
-        run: |
-          git config --global user.email "bec_ci_staging@psi.ch"
-          git config --global user.name "BEC automated CI"
-
-          branch="chore/update-template-$(python -m uuid)"
-          echo "switching to branch $branch"
-          git checkout -b $branch
-
-          echo "Running copier update..."
-          output="$(copier update --trust --defaults --conflict inline 2>&1)"
-          echo "$output"
-          msg="$(printf '%s\n' "$output" | head -n 1)"
-
-          if ! grep -q "make_commit: true" .copier-answers.yml ; then
-            echo "Autocommit not made, committing..."
-            git add -A
-            git commit -a -m "$msg"
-          fi
-
-          if diff-index --quiet HEAD ; then
-            echo "No changes detected"
-            exit 0
-          fi
-
-          git push -u origin $branch
-          curl -X POST "https://gitea.psi.ch/api/v1/repos/${{ gitea.repository }}/pulls" \
-            -H "Authorization: token ${{ secrets.CI_REPO_WRITE }}" \
-            -H "Content-Type: application/json" \
-            -d "{
-                  \"title\": \"Template: $(echo $msg)\",
-                  \"body\": \"This PR was created by Gitea Actions\",
-                  \"head\": \"$(echo $branch)\",
-                  \"base\": \"main\"
-                }"

.gitignore

@@ -8,9 +8,6 @@
 **/.pytest_cache
 **/*.egg*
 
-# recovery_config files
-recovery_config_*
-
 # file writer data
 **.h5
 

.gitlab-ci.yml

@@ -0,0 +1,40 @@
+# This file is a template, and might need editing before it works on your project.
+# Official language image. Look for the different tagged releases at:
+# https://hub.docker.com/r/library/python/tags/
+image: $CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX/python:3.10
+
+#commands to run in the Docker container before starting each job.
+before_script:
+  - pip install -e .[dev]
+
+# different stages in the pipeline
+stages:
+  - Formatter
+  - Test
+  - AdditionalTests
+  - Deploy
+
+formatter:
+  stage: Formatter
+  script:
+    - pip install black
+    - black --check --diff --color --line-length=100 ./
+
+pytest:
+  stage: Test
+  script:
+    - pytest -v --random-order ./tests
+
+tests-3.11:
+  stage: AdditionalTests
+  image: $CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX/python:3.11
+  needs: ["pytest"]
+  script:
+    - pytest -v --random-order ./tests
+  allow_failure: true
+
+tests-3.12:
+  extends: "tests-3.11"
+  stage: AdditionalTests
+  image: $CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX/python:3.12
+  allow_failure: true

LICENSE

@@ -1,29 +0,0 @@
-
-BSD 3-Clause License
-
-Copyright (c) 2025, Paul Scherrer Institute 
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its
-   contributors may be used to endorse or promote products derived from
-   this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
-IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
-FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
-DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
-SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
-CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
-OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

README.md

@@ -1,65 +1,3 @@
 # Debye BEC
 
 Debye-specific plugins and configs for BEC
-
-## How to
-
-### Visual studio code
-To open
-```
-ssh x01da-bec-001
-cd /data/test/x01da-test-bec/bec_deployment
-code
-```
-To run tests directly in vs code terminal
-```
-. /data/test/x01da-test-bec/bec_deployment/bec_venv/bin/activate
-cd /data/test/x01da-test-bec/bec_deployment/debye_bec
-pytest -vv ./tests
-```
-### Git
-```
-git pull
-git push origin feat/add_advanced_scan_modes
-git status
-```
-If git claims to not know the author identity
-```
-git config --global user.email "you@example.com"
-git config --global user.name "gac-x01da"
-```
-
-### BEC Server
-```
-ssh x01da-bec-001
-cd /data/test/x01da-test-bec/bec_deployment
-. /data/test/x01da-test-bec/bec_deployment/bec_venv/bin/activate
-
-bec-server start
-bec-server restart
-bec-server stop
-bec-server attach
-```
-
-To restart individual server modules:
-- ctrl-c + ctrl-c to stop for example scan server or device server module
-- restart server module(s)
-
-### BEC Client
-```
-ssh x01da-bec-001
-cd /data/test/x01da-test-bec/bec_deployment
-bec
-```
-
-#### Useful commands in bec
-Update Session with specific config:
-```
-bec.config.update_session_with_file("debye_bec/debye_bec/device_configs/x01da_test_config.yaml")
-```
-
-Define folder and sample name for written files:
-```
-bec.system_config.file_directory="test"
-bec.system_config.file_suffix ="sampleA"
-```

bec_plugins/__init__.py

@@ -0,0 +1 @@
+from .bec_client import *

bec_plugins/bec_client/__init__.py

@@ -0,0 +1 @@
+from .plugins import *

bec_plugins/bec_client/hli/spec_hli.py

@@ -0,0 +1,245 @@
+from bec_lib.devicemanager import Device
+from bec_lib.scan_report import ScanReport
+
+# pylint:disable=undefined-variable
+# pylint: disable=too-many-arguments
+
+
+def dscan(
+    motor1: Device, m1_from: float, m1_to: float, steps: int, exp_time: float, **kwargs
+) -> ScanReport:
+    """Relative line scan with one device.
+
+    Args:
+        motor1 (Device): Device that should be scanned.
+        m1_from (float): Start position relative to the current position.
+        m1_to (float): End position relative to the current position.
+        steps (int): Number of steps.
+        exp_time (float): Exposure time.
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> dscan(dev.motor1, -5, 5, 10, 0.1)
+    """
+    return scans.line_scan(
+        motor1, m1_from, m1_to, steps=steps, exp_time=exp_time, relative=True, **kwargs
+    )
+
+
+def d2scan(
+    motor1: Device,
+    m1_from: float,
+    m1_to: float,
+    motor2: Device,
+    m2_from: float,
+    m2_to: float,
+    steps: int,
+    exp_time: float,
+    **kwargs
+) -> ScanReport:
+    """Relative line scan with two devices.
+
+    Args:
+        motor1 (Device): First device that should be scanned.
+        m1_from (float): Start position of the first device relative to its current position.
+        m1_to (float): End position of the first device relative to its current position.
+        motor2 (Device): Second device that should be scanned.
+        m2_from (float): Start position of the second device relative to its current position.
+        m2_to (float): End position of the second device relative to its current position.
+        steps (int): Number of steps.
+        exp_time (float): Exposure time
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> d2scan(dev.motor1, -5, 5, dev.motor2, -8, 8, 10, 0.1)
+    """
+    return scans.line_scan(
+        motor1,
+        m1_from,
+        m1_to,
+        motor2,
+        m2_from,
+        m2_to,
+        steps=steps,
+        exp_time=exp_time,
+        relative=True,
+        **kwargs
+    )
+
+
+def ascan(motor1, m1_from, m1_to, steps, exp_time, **kwargs):
+    """Absolute line scan with one device.
+
+    Args:
+        motor1 (Device): Device that should be scanned.
+        m1_from (float): Start position.
+        m1_to (float): End position.
+        steps (int): Number of steps.
+        exp_time (float): Exposure time.
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> ascan(dev.motor1, -5, 5, 10, 0.1)
+    """
+    return scans.line_scan(
+        motor1, m1_from, m1_to, steps=steps, exp_time=exp_time, relative=False, **kwargs
+    )
+
+
+def a2scan(motor1, m1_from, m1_to, motor2, m2_from, m2_to, steps, exp_time, **kwargs):
+    """Absolute line scan with two devices.
+
+    Args:
+        motor1 (Device): First device that should be scanned.
+        m1_from (float): Start position of the first device.
+        m1_to (float): End position of the first device.
+        motor2 (Device): Second device that should be scanned.
+        m2_from (float): Start position of the second device.
+        m2_to (float): End position of the second device.
+        steps (int): Number of steps.
+        exp_time (float): Exposure time
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> a2scan(dev.motor1, -5, 5, dev.motor2, -8, 8, 10, 0.1)
+    """
+    return scans.line_scan(
+        motor1,
+        m1_from,
+        m1_to,
+        motor2,
+        m2_from,
+        m2_to,
+        steps=steps,
+        exp_time=exp_time,
+        relative=False,
+        **kwargs
+    )
+
+
+def dmesh(motor1, m1_from, m1_to, m1_steps, motor2, m2_from, m2_to, m2_steps, exp_time, **kwargs):
+    """Relative mesh scan (grid scan) with two devices.
+
+    Args:
+        motor1 (Device): First device that should be scanned.
+        m1_from (float): Start position of the first device relative to its current position.
+        m1_to (float): End position of the first device relative to its current position.
+        m1_steps (int): Number of steps for motor1.
+        motor2 (Device): Second device that should be scanned.
+        m2_from (float): Start position of the second device relative to its current position.
+        m2_to (float): End position of the second device relative to its current position.
+        m2_steps (int): Number of steps for motor2.
+        exp_time (float): Exposure time
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> dmesh(dev.motor1, -5, 5, 10, dev.motor2, -8, 8, 10, 0.1)
+    """
+    return scans.grid_scan(
+        motor1,
+        m1_from,
+        m1_to,
+        m1_steps,
+        motor2,
+        m2_from,
+        m2_to,
+        m2_steps,
+        exp_time=exp_time,
+        relative=True,
+    )
+
+
+def amesh(motor1, m1_from, m1_to, m1_steps, motor2, m2_from, m2_to, m2_steps, exp_time, **kwargs):
+    """Absolute mesh scan (grid scan) with two devices.
+
+    Args:
+        motor1 (Device): First device that should be scanned.
+        m1_from (float): Start position of the first device.
+        m1_to (float): End position of the first device.
+        m1_steps (int): Number of steps for motor1.
+        motor2 (Device): Second device that should be scanned.
+        m2_from (float): Start position of the second device.
+        m2_to (float): End position of the second device.
+        m2_steps (int): Number of steps for motor2.
+        exp_time (float): Exposure time
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> amesh(dev.motor1, -5, 5, 10, dev.motor2, -8, 8, 10, 0.1)
+    """
+    return scans.grid_scan(
+        motor1,
+        m1_from,
+        m1_to,
+        m1_steps,
+        motor2,
+        m2_from,
+        m2_to,
+        m2_steps,
+        exp_time=exp_time,
+        relative=False,
+    )
+
+
+def umv(*args) -> ScanReport:
+    """Updated absolute move (i.e. blocking) for one or more devices.
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> umv(dev.samx, 1)
+        >>> umv(dev.samx, 1, dev.samy, 2)
+    """
+    return scans.umv(*args, relative=False)
+
+
+def umvr(*args) -> ScanReport:
+    """Updated relative move (i.e. blocking) for one or more devices.
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> umvr(dev.samx, 1)
+        >>> umvr(dev.samx, 1, dev.samy, 2)
+    """
+    return scans.umv(*args, relative=True)
+
+
+def mv(*args) -> ScanReport:
+    """Absolute move for one or more devices.
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> mv(dev.samx, 1)
+        >>> mv(dev.samx, 1, dev.samy, 2)
+    """
+    return scans.mv(*args, relative=False)
+
+
+def mvr(*args) -> ScanReport:
+    """Relative move for one or more devices.
+
+    Returns:
+        ScanReport: Status object.
+
+    Examples:
+        >>> mvr(dev.samx, 1)
+        >>> mvr(dev.samx, 1, dev.samy, 2)
+    """
+    return scans.mv(*args, relative=True)

bec_plugins/bec_client/plugins/__init__.py

@@ -0,0 +1 @@
+

bec_plugins/bec_client/startup/post_startup.py

@@ -0,0 +1,46 @@
+"""
+Post startup script for the BEC client. This script is executed after the
+IPython shell is started. It is used to load the beamline specific
+information and to setup the prompts.
+
+The script is executed in the global namespace of the IPython shell. This
+means that all variables defined here are available in the shell.
+
+If needed, bec command-line arguments can be parsed here. For example, to
+parse the --session argument, add the following lines to the script:
+
+    import argparse
+    parser = argparse.ArgumentParser()
+    parser.add_argument("--session", help="Session name", type=str, default="my_default_session")
+    args = parser.parse_args()
+
+    if args.session == "my_session":
+        print("Loading my_session session")
+        from bec_plugins.bec_client.plugins.my_session import *
+    else:
+        print("Loading default session")
+        from bec_plugins.bec_client.plugins.default_session import *
+"""
+
+# pylint: disable=invalid-name, unused-import, import-error, undefined-variable, unused-variable, unused-argument, no-name-in-module
+import argparse
+
+from bec_lib import bec_logger
+
+logger = bec_logger.logger
+
+logger.info("Using the Debye startup script.")
+
+parser = argparse.ArgumentParser()
+parser.add_argument("--session", help="Session name", type=str, default="Debye")
+args = parser.parse_args()
+
+# SETUP BEAMLINE INFO
+from bec_client.plugins.SLS.sls_info import OperatorInfo, SLSInfo
+
+bec._beamline_mixin._bl_info_register(SLSInfo)
+bec._beamline_mixin._bl_info_register(OperatorInfo)
+
+# SETUP PROMPTS
+bec._ip.prompts.username = "Debye"
+bec._ip.prompts.status = 1

bec_plugins/bec_client/startup/pre_startup.py

@@ -0,0 +1,25 @@
+"""
+Pre-startup script for BEC client. This script is executed before the BEC client
+is started. It can be used to set up the BEC client configuration. The script is
+executed in the global namespace of the BEC client. This means that all
+variables defined here are available in the BEC client.
+
+To set up the BEC client configuration, use the ServiceConfig class. For example,
+to set the configuration file path, add the following lines to the script:
+
+    import pathlib
+    from bec_lib import ServiceConfig
+
+    current_path = pathlib.Path(__file__).parent.resolve()
+    CONFIG_PATH = f"{current_path}/<path_to_my_config_file.yaml>"
+
+    config = ServiceConfig(CONFIG_PATH)
+
+If this startup script defined a ServiceConfig object, the BEC client will use
+it to configure itself. Otherwise, the BEC client will use the default config.
+"""
+
+# example:
+# current_path = pathlib.Path(__file__).parent.resolve()
+# CONFIG_PATH = f"{current_path}/../../../bec_config.yaml"
+# config = ServiceConfig(CONFIG_PATH)

bec_plugins/services/NIDAQ_writer/NIDAQ_writer.py

@@ -7,12 +7,10 @@ import traceback
 
 import h5py
 import numpy as np
-from bec_lib import bec_logger, messages
+from bec_lib import MessageEndpoints, RedisConnector, ServiceConfig, bec_logger, messages
 from bec_lib.bec_service import BECService
-from bec_lib.endpoints import MessageEndpoints
+from bec_lib.file_utils import FileWriterMixin
-from bec_lib.file_utils import FileWriter
+from bec_lib.redis_connector import MessageObject
-from bec_lib.redis_connector import MessageObject, RedisConnector
-from bec_lib.service_config import ServiceConfig
 
 logger = bec_logger.logger
 
@@ -28,8 +26,8 @@ class NIDAQWriterService(BECService):
     def __init__(self, config: ServiceConfig, connector_cls: RedisConnector) -> None:
         super().__init__(config=config, connector_cls=connector_cls, unique_service=True)
         self.queue = queue.Queue()
-        config = self._service_config.config.get("file_writer")
+        config = self._service_config.service_config.get("file_writer")
-        self.writer_mixin = FileWriter(service_config=config)
+        self.writer_mixin = FileWriterMixin(config)
         self._scan_status_consumer = None
         self._ni_data_consumer = None
         self._ni_data_event = None
@@ -161,7 +159,7 @@ class NIDAQWriterService(BECService):
         signals = {}
 
         for key in msgs[0].content["signals"]:
-            signals[key] = np.concatenate([msg.content["signals"][key]["value"] for msg in msgs])
+            signals[key] = np.concatenate([msg.content["signals"][key] for msg in msgs])
 
         # write data to queue
         self.queue.put(signals)

bec_plugins/services/NIDAQ_writer/scan_status.py

@@ -1,6 +1,4 @@
-from bec_lib import messages
+from bec_lib import MessageEndpoints, RedisConnector, messages
-from bec_lib.endpoints import MessageEndpoints
-from bec_lib.redis_connector import RedisConnector
 
 
 def send_scan_status(scan_number, status):
@@ -26,9 +24,19 @@ if __name__ == "__main__":
     parser = argparse.ArgumentParser(description="Scan status helper")
     command = parser.add_subparsers(dest="command")
     start = command.add_parser("start", help="Start a new scan")
-    start.add_argument("--scan_number", type=int, required=True, help="Scan number")
+    start.add_argument(
+        "--scan_number",
+        type=int,
+        required=True,
+        help="Scan number",
+    )
     stop = command.add_parser("stop", help="Stop the scan")
-    stop.add_argument("--scan_number", type=int, required=True, help="Scan number")
+    stop.add_argument(
+        "--scan_number",
+        type=int,
+        required=True,
+        help="Scan number",
+    )
 
     args = parser.parse_args()
     send_scan_status(args.scan_number, args.command)

bec_plugins/services/NIDAQ_writer/utils/nidaq_sim.py

@@ -2,8 +2,7 @@ import threading
 import time
 
 import numpy as np
-from bec_lib import messages
+from bec_lib import MessageEndpoints, RedisConnector, ServiceConfig, bec_logger, messages
-from bec_lib.redis_connector import RedisConnector
 
 
 class NIDAQSim(threading.Thread):
@@ -14,7 +13,10 @@ class NIDAQSim(threading.Thread):
         index = 0
         producer = RedisConnector(["localhost:6379"]).producer()
         signal = np.asarray(range(index, index + 600000))
-        signals = {"signal1": signal, "signal2": signal}
+        signals = {
+            "signal1": signal,
+            "signal2": signal,
+        }
 
         msg = messages.DeviceMessage(signals=signals)
         msg = msg.dumps()
@@ -38,6 +40,9 @@ class NIDAQSim(threading.Thread):
 
             time.sleep(0.5)
             print(f"Elapsed time: {time.time() - start}")
+        print(f"Total time: {time.time() - total_time}")
+        print(f"FPS: {index / (time.time() - total_time)}")
+        print(f"Signal size: {signal.nbytes/1e6*2} MB")
 
 
 if __name__ == "__main__":

bec_plugins/services/launch_writer.py

@@ -1,14 +1,15 @@
 import argparse
 import threading
 
-from bec_lib import bec_logger
+from bec_lib import RedisConnector, ServiceConfig, bec_logger
-from bec_lib.redis_connector import RedisConnector
+from NIDAQ_writer import NIDAQWriterService
-from bec_lib.service_config import ServiceConfig
-
-from debye_bec.services.NIDAQ_writer import NIDAQWriterService
 
 parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter)
-parser.add_argument("--config", default="", help="path to the config file")
+parser.add_argument(
+    "--config",
+    default="",
+    help="path to the config file",
+)
 clargs = parser.parse_args()
 config_path = clargs.config
 
@@ -16,7 +17,10 @@ config = ServiceConfig(config_path)
 bec_logger.level = bec_logger.LOGLEVEL.INFO
 logger = bec_logger.logger
 
-bec_server = NIDAQWriterService(config=config, connector_cls=RedisConnector)
+bec_server = NIDAQWriterService(
+    config=config,
+    connector_cls=RedisConnector,
+)
 try:
     event = threading.Event()
     # pylint: disable=E1102

bin/.gitignore

@@ -1 +0,0 @@
-# Add anything you don't want to check in to git, e.g. very large files

debye_bec/bec_ipython_client/plugins/move_to_label.py

@@ -1,82 +0,0 @@
-from __future__ import annotations
-
-import builtins
-from typing import TYPE_CHECKING
-
-from bec_lib import bec_logger
-from debye_bec.devices.absorber import STATUS as ABS_STATUS
-
-logger = bec_logger.logger
-# import builtins to avoid linter errors
-dev = builtins.__dict__.get("dev")
-
-class MoveToLabelError(Exception):
-    """Exception for the MoveToLabel function"""
-
-def move_to_label():
-    """
-    Function to move several motors to a specific position defined in the label dict.
-    """
-
-    label = get_device_conditions(label="digitalTwin")
-
-    # Get absorber status and close if open
-    logger.info("Check Frontend Absorber Status")
-    abs_was_open = dev.abs.status.get() == ABS_STATUS.OPEN
-    if abs_was_open:
-        logger.info("  Close Frontend Absorber")
-        status = dev.abs.close()
-        status.wait()
-
-    # Move Frontend Slits
-    logger.info("Move Frontend Slits into position")
-    devices = ["sldi_centerx", "sldi_centery", "sldi_gapx", "sldi_gapy"]
-    matches = {key: label[key] for key in devices if key in label}
-    statuses = []
-    for device in matches.values():
-        statuses.append(device['device'].move(device['value']))
-    for status in statuses:
-        status.wait(timeout=30)
-
-    # Move Collimating mirror
-    logger.info("Move Collimating Mirror into position")
-    if "cm_rotx" in label: # pitch
-        logger.info("  Move pitch into position")
-        surveyed_movement(
-            axis=label['cm_rotx'],
-            surveyed_axes= [
-                {'device': dev.cm_rotz, 'abs_tol': 0.1},
-            ]
-        )
-
-    # Restore absorber position
-    logger.info("Restore Frontend Absorber Status")
-    if abs_was_open:
-        status = dev.abs.open()
-        status.wait()
-
-
-def surveyed_movement(axis, surveyed_axes):
-    """
-    Moves an axis while surverying a set of axes.
-
-    Args:
-        axis (DeviceCondition): Device condition
-        surveyed_axes (list): List of dicts (same format as DeviceCondition)
-
-    Raises:
-        If during movement of axis, one of the surveyed axes moves out of tolerance.
-    """
-
-    for surv_ax in surveyed_axes:
-        surv_ax['old_value'] = surv_ax['device'].read()
-    status = axis['device'].move(axis['value'])
-    while status.status == 'RUNNING':
-        for surv_ax in surveyed_axes:
-            if abs(surv_ax['device'].read() - surv_ax['old_value']) > surv_ax['abs_tol']:
-                axis['device'].stop()
-                raise MoveToLabelError(
-                    f"During movement of {axis['device'].name}, {surv_ax['device'].name} " +
-                    f"started to move unexpectedly (old pos: {surv_ax['old_value']}, " +
-                    f"current pos: {surv_ax['device'].read()})"
-                )

debye_bec/bec_ipython_client/startup/post_startup.py

@@ -1,36 +0,0 @@
-"""
-Post startup script for the BEC client. This script is executed after the
-IPython shell is started. It is used to load the beamline specific
-information and to setup the prompts.
-
-The script is executed in the global namespace of the IPython shell. This
-means that all variables defined here are available in the shell.
-
-While command-line arguments have to be set in the pre-startup script, the
-post-startup script can be used to load beamline specific information and
-to setup the prompts.
-
-    from bec_lib.logger import bec_logger
-
-    logger = bec_logger.logger
-
-    # pylint: disable=import-error
-    _args = _main_dict["args"]
-
-    _session_name = "cSAXS"
-    if _args.session.lower() == "lamni":
-        from csaxs_bec.bec_ipython_client.plugins.cSAXS import *
-        from csaxs_bec.bec_ipython_client.plugins.LamNI import *
-
-        _session_name = "LamNI"
-        lamni = LamNI(bec)
-        logger.success("LamNI session loaded.")
-
-    elif _args.session.lower() == "csaxs":
-        print("Loading cSAXS session")
-        from csaxs_bec.bec_ipython_client.plugins.cSAXS import *
-
-        logger.success("cSAXS session loaded.")
-"""
-
-# pylint: disable=invalid-name, unused-import, import-error, undefined-variable, unused-variable, unused-argument, no-name-in-module

debye_bec/bec_ipython_client/startup/pre_startup.py

@@ -1,32 +0,0 @@
-"""
-Pre-startup script for BEC client. This script is executed before the BEC client
-is started. It can be used to add additional command line arguments.
-"""
-
-import os
-
-from bec_lib.service_config import ServiceConfig
-
-import debye_bec
-
-
-def extend_command_line_args(parser):
-    """
-    Extend the command line arguments of the BEC client.
-    """
-
-    # parser.add_argument("--session", help="Session name", type=str, default="cSAXS")
-
-    return parser
-
-
-def get_config() -> ServiceConfig:
-    """
-    Create and return the ServiceConfig for the plugin repository
-    """
-    deployment_path = os.path.dirname(os.path.dirname(os.path.dirname(debye_bec.__file__)))
-    files = os.listdir(deployment_path)
-    if "bec_config.yaml" in files:
-        return ServiceConfig(config_path=os.path.join(deployment_path, "bec_config.yaml"))
-    else:
-        return ServiceConfig(redis={"host": "localhost", "port": 6379})

debye_bec/bec_widgets/widgets/client.py

@@ -1,41 +0,0 @@
-# This file was automatically generated by generate_cli.py
-# type: ignore
-
-from __future__ import annotations
-
-from bec_lib.logger import bec_logger
-
-from bec_widgets.cli.rpc.rpc_base import RPCBase, rpc_call, rpc_timeout
-
-logger = bec_logger.logger
-
-# pylint: skip-file
-
-
-_Widgets = {
-    "DigitalTwin": "DigitalTwin",
-}
-
-
-class DigitalTwin(RPCBase):
-    """Main widget of Digital Twin"""
-
-    _IMPORT_MODULE = "debye_bec.bec_widgets.widgets.digital_twin.digital_twin"
-
-    @rpc_call
-    def remove(self):
-        """
-        Cleanup the BECConnector
-        """
-
-    @rpc_call
-    def attach(self):
-        """
-        None
-        """
-
-    @rpc_call
-    def detach(self):
-        """
-        Detach the widget from its parent dock widget (if widget is in the dock), making it a floating widget.
-        """

debye_bec/bec_widgets/widgets/designer_plugins.py

@@ -1,13 +0,0 @@
-# This file was automatically generated by generate_cli.py
-# type: ignore
-from __future__ import annotations
-
-# pylint: skip-file
-
-designer_plugins = {
-    "DigitalTwin": ("debye_bec.bec_widgets.widgets.digital_twin.digital_twin", "DigitalTwin"),
-}
-
-widget_icons = {
-    "DigitalTwin": "lightbulb",
-}

debye_bec/bec_widgets/widgets/digital_twin/calc_positions.py

@@ -1,242 +0,0 @@
-import os
-import numpy as np
-from bec_lib import bec_logger
-
-os.environ["USE_XRT"] = "False"
-import debye_bec.bec_widgets.widgets.x01da_parameters as bl
-
-logger = bec_logger.logger
-
-def calc_positions(cfg):
-
-    pos = {}
-
-    ## FE slits
-    trxr = -np.arctan(cfg['h_acc'])*bl.feSlits.center1[1]
-    trxw = (np.arctan(cfg['h_acc'])*bl.feSlits.center1[1])/bl.feSlits.center1[1]*bl.feSlits.center2[1]
-    tryb = -np.arctan(cfg['v_acc'])*bl.feSlits.center1[1]
-    tryt = (np.arctan(cfg['v_acc'])*bl.feSlits.center1[1])/bl.feSlits.center1[1]*bl.feSlits.center2[1]
-
-    # trxw_proj = trxw/bl.feSlits.center2[1]*bl.feSlits.center1[1]
-    # tryt_proj = tryt/bl.feSlits.center2[1]*bl.feSlits.center1[1]
-
-    # xcen = (trxr + trxw) / 2
-    # ycen = (tryb + tryt) / 2
-    xgap = trxw - trxr
-    ygap = tryt - tryb
-
-    pos['sldi_gapx'] = {'value': xgap}
-    pos['sldi_gapy'] = {'value': ygap}
-
-    ## Collimating Mirror
-    obj_dist = bl.cm.center[1] # object distance
-    beam_vs = 2 * obj_dist * np.tan(cfg['v_acc']) # vertical size of beam after CM
-
-    # TRX
-    try:
-        index = bl.cm.surface.index(cfg['cm_stripe'])
-    except:
-        raise ValueError(f"Requested stripe {cfg['cm_stripe']} not found in parameters!")
-    cm_trx = -(bl.cm.limOptX[0][index] + bl.cm.limOptX[1][index]) / 2
-    pos['cm_trx'] = {'value': cm_trx}
-
-    # TRY
-    height = obj_dist * np.tan(cfg['v_acc'])**2 * 1 / np.tan(cfg['cm_pitch'])
-    pos['cm_try'] = {'value': height}
-
-    # Pitch
-    pos['cm_rotx'] = {'value': -cfg["cm_pitch"]*1e3} # invert and convert to mrad (same as EGU of rotx axis)
-
-    # Bending Radius
-    radius = 2. * obj_dist / np.sin(cfg['cm_pitch']) # Elements of modern X-ray Physics, page 108 ff.
-    pos['cm_bnd_radius'] = {'value': radius * 1e-6} # Convert to km
-
-    ## Monochromator
-    # Bragg Angle
-    # if cfg['mo1_mode'] == 'Monochromatic':
-    #     # Add 2x CM pitch to the bragg angle
-    #     bragg =  ((2 * cfg['cm_pitch']) + cfg['mo1_bragg']) / np.pi * 180
-    # elif cfg['mo1_mode'] == 'Pinkbeam':
-    #     # Align xtal surfaces parallel to beam
-    #     bragg =  (2 * cfg['cm_pitch']) / np.pi * 180
-    # else:
-    #     raise Exception('Monochromator mode not supported')
-    if cfg['mo1_mode'] == 'Monochromatic':
-        # Add 2x CM pitch to the bragg angle
-        bragg = cfg['mo1_bragg']
-    elif cfg['mo1_mode'] == 'Pinkbeam':
-        # Align xtal surfaces parallel to beam
-        bragg =  0
-    else:
-        raise Exception('Monochromator mode not supported')
-    pos['mo1_bragg_angle'] = {'value': bragg/np.pi*180} # Bragg angle in deg
-
-    # TRY, Height
-    l = bl.mo1.xtalGap[0]/np.sin(cfg['mo1_bragg'])
-    yhor = l*np.cos(2.*(cfg['mo1_bragg']+cfg['cm_pitch']))
-    yver = yhor*np.tan(2.*cfg['cm_pitch'])
-
-    if cfg['mo1_mode'] == 'Monochromatic':
-        beamOffsetCCM = l*np.sin(2.*(cfg['mo1_bragg']+cfg['cm_pitch']))-yver # Resultat ist korrekt!
-    elif cfg['mo1_mode'] == 'Pinkbeam':
-        beamOffsetCCM = 0
-    else:
-        raise Exception('Monochromator mode not supported')
-
-    def csc(a):
-        return 1/np.sin(a)
-
-    def cot(a):
-        return 1/np.tan(a)
-
-    # calculate height of center of first crystal surface
-    f = bl.mo1.rotOffset # rotation offset, mm
-    # logger.info(f'f = {f}')
-    d = bl.mo1.heightOffset # xtal height offset, mm
-    # logger.info(f'd = {d}')
-    c = d*csc(cfg['mo1_bragg'])-f*cot(cfg['mo1_bragg'])
-    # logger.info(f'c = {c}')
-
-    # Calculate height of center of rotation
-    b = np.sqrt(d**2*csc(cfg['mo1_bragg'])**2-2*d*f*cot(cfg['mo1_bragg'])*csc(cfg['mo1_bragg'])+f**2*cot(cfg['mo1_bragg'])**2+f**2)
-    # logger.info(f'b = {b}')
-    h = np.cos(np.pi/2-np.arctan(f/c)-cfg['mo1_bragg']-2*cfg['cm_pitch'])*b
-    # logger.info(f'h = {h}')
-    h2 = ((bl.mo1.center[1] - bl.cm.center[1])-np.sqrt(b**2-h**2))*np.tan(2*cfg['cm_pitch'])
-    # logger.info(f'mo1 = {bl.mo1.center[1]}')
-    # logger.info(f'cm = {bl.cm.center[1]}')
-    # logger.info(f'pitch = {cfg["cm_pitch"]}')
-    # logger.info(f'h2 = {h2}')
-    #TODO Mono height not exactly the same as in raytracing
-    heightCCM1real = h + h2 # per design, the height should not change if the pitch of the CM is not changed!
-    # heightCCM1real = heightCCM1real - 30 # Zero position of stage is at 1430 mm from ground.
-    if cfg['mo1_mode'] == 'Monochromatic':
-        pass
-    elif cfg['mo1_mode'] == 'Pinkbeam':
-        heightCCM1real = heightCCM1real - 13 # Move down to let beam pass between both crystal without touching copper cooler
-    else:
-        raise Exception('Monochromator mode not supported')
-    pos['mo1_try'] = {'value': heightCCM1real}
-
-    # TRX, Crystal selection
-    if cfg['mo1_mode'] == 'Monochromatic':
-        try:
-            xtal = cfg['mo1_xtal'].translate(str.maketrans('', '', '()')) # Remove brackets from xtal name to conform with parameters
-            index = bl.mo1.xtal.index(xtal)
-        except:
-            raise ValueError(f"Requested xtal {xtal} not found in parameters!")
-        pos['mo1_trx'] = {'value': bl.mo1.xtalOffsetX[index]}
-    else:
-        pos['mo1_trx'] = {'value': 0}
-
-
-    #TODO move to mono, calc for beam Z-movement between crystal surfaces
-    diag = bl.mo1.xtalGap[0] / np.sin(cfg['mo1_bragg']) # Calculations for Mono
-    dz = diag * np.cos(2 * (cfg['cm_pitch'] + cfg['mo1_bragg']))
-
-    ## Slits 1
-    d = bl.opSlits1.center[1] - bl.cm.center[1] - dz
-    sl1_beam_height = d * np.tan(2 * cfg['cm_pitch']) + beamOffsetCCM
-    pos['sl1_centery'] = {'value': sl1_beam_height}
-    pos['sl1_gapy'] = {'value': beam_vs + 1} # Add 0.5 mm space on both sides of the beam
-
-    ## Beam Monitor 1
-    d = bl.opBM1.center[1] - bl.cm.center[1] - dz
-    # logger.info(f'distance: {d}')
-    # logger.info(f'cm pitch: {cfg["cm_pitch"]}')
-    # logger.info(f'mono offset: {beamOffsetCCM}')
-    bm1_beam_height = d * np.tan(2 * cfg['cm_pitch']) + beamOffsetCCM
-    pos['bm1_try'] = {'value': bm1_beam_height}
-
-    ## Focusing Mirror
-    p = bl.fm.center[1]
-    q = cfg['smpl'] - bl.fm.center[1]
-    f = (p*q)/(p+q) # focal length
-
-    # Bender radius
-    if cfg['fm_qy'] is None:
-        radius = 2 * q / np.sin(cfg['fm_rotx']) # ideal bending radius for focused beam
-    else:
-        radius = 2 * cfg['fm_qy'] / np.sin(cfg['fm_rotx']) # ideal bending radius for unfocused beam
-    pos['fm_bnd_radius'] = {'value': radius * 1e-6} # Convert to km
-
-    # Pitch
-    d = bl.fm.center[1] - bl.cm.center[1] - dz
-    fm_rotx = 2 * cfg['cm_pitch'] - cfg['fm_rotx'] # calculate pitch in absolute values (according to horizontal plane)
-    pos['fm_rotx'] = {'value': -fm_rotx * 1e3} # invert and convert to mrad (same as EGU of rotx axis)
-
-    if cfg['fm_stripe'] in ('Rh (toroid)', 'Pt (toroid)'):
-
-        # TRY
-        if cfg['fm_stripe'] in 'Rh (toroid)':
-            r = bl.fm.r[0]
-            h_cyl = bl.fm.hToroid[0]
-        else: # PT toroid
-            r = bl.fm.r[1]
-            h_cyl = bl.fm.hToroid[1]
-        widthBeam = 2 * bl.fm.center[1] * np.tan(cfg['h_acc'] * 1e-3)
-        alpha = np.arccos(1 - widthBeam**2 / (2 * r**2))
-        h = r - (r * np.cos(alpha / 2))
-        fm_beam_height = (d * np.tan(2 * cfg['cm_pitch']) + beamOffsetCCM) * cfg['fm_gain_height']
-        fm_height = (d * np.tan(2 * cfg['cm_pitch']) + beamOffsetCCM - h_cyl + h / 2) * cfg['fm_gain_height']
-        pos['fm_try'] = {'value': fm_height}
-
-        # TRX
-        if cfg['fm_stripe'] in 'Rh (toroid)':
-            x_cyl = - bl.fm.xToroid[0]
-        else:
-            x_cyl = - bl.fm.xToroid[1]
-        pos['fm_trx'] = {'value': x_cyl}
-
-    elif cfg['fm_stripe'] in ('Rh (flat)', 'Pt (flat)'):
-
-        # TRY
-        fm_height = (d * np.tan(2 * cfg['cm_pitch']) + beamOffsetCCM) * cfg['fm_gain_height']
-        fm_beam_height = fm_height
-        pos['fm_try'] = {'value': fm_height}
-
-        # TRX
-        if cfg['fm_stripe'] in 'Rh (flat)':
-            x_flat = - bl.fm.xFlat[0]
-        else:
-            x_flat = - bl.fm.xFlat[1]
-        pos['fm_trx'] = {'value': x_flat}
-
-    else:
-        raise Exception('FM Stripe selection not valid')
-
-    pos['fm_roty'] = {'value': 0}
-    pos['fm_rotz'] = {'value': 0}
-
-    ## Slits 2
-    d = bl.opSlits2.center[1] - bl.fm.center[1]
-    sl2_beam_height = fm_beam_height - d * np.tan(-(2 * cfg['cm_pitch'] - 2 * cfg['fm_rotx']))
-    pos['sl2_centery'] = {'value': sl2_beam_height}
-    pos['sl2_gapy'] = {'value': beam_vs + 1} # Add 0.5 mm space on both sides of the beam
-
-    ## Beam Monitor 2
-    d = bl.opBM2.center[1] - bl.fm.center[1]
-    bm2_beam_height = fm_beam_height - d * np.tan(-(2 * cfg['cm_pitch'] - 2 * cfg['fm_rotx']))
-    pos['bm2_try'] = {'value': bm2_beam_height}
-
-    ## Optical Table
-
-    # TRY
-    d = bl.ehWindow.center[1] - bl.fm.center[1]
-    ot_height = fm_beam_height - d * np.tan(-(2 * cfg['cm_pitch'] - 2 * cfg['fm_rotx']))
-    # logger.info(fm_height)
-    # logger.info(d * np.tan((2 * cfg['cm_pitch'] - 2 * cfg['fm_rotx'])))
-    pos['ot_try'] = {'value': ot_height}
-
-    # Pitch
-    ot_pitch = - (2 * cfg['cm_pitch'] - 2 * cfg['fm_rotx'])
-    pos['ot_rotx'] = {'value': ot_pitch * 1e3}
-
-    # TRZ ES1
-    ot_es1_trz = cfg['smpl']
-    pos['ot_es1_trz'] = {'value': ot_es1_trz}
-
-    # ES0 exit window
-    pos['es0wi_try'] = {'value': 5} # At 5mm, the middle of the window is 500 mm from the table (neutral position)
-
-    return pos

debye_bec/bec_widgets/widgets/digital_twin/calc_sideview.py

@@ -1,42 +0,0 @@
-import numpy as np
-import debye_bec.bec_widgets.widgets.x01da_parameters as bl
-
-def calc_sideview(cfg):
-
-    # Calculate height of beam after CM
-    height = 2 * bl.cm.center[1] * np.tan(cfg['v_acc'])
-
-    # beam height (Y=height, Z=along beam)
-    beam = {}
-    beam['x'] = []
-    beam['y'] = []
-    beam['x'].append(0) # Source
-    beam['y'].append(bl.sourceHeight)
-    beam['x'].append(bl.cm.center[1]) # CM 
-    beam['y'].append(bl.sourceHeight)
-    if cfg['mo1_mode'] in 'Monochromatic':
-        diag = bl.mo1.xtalGap[0]/np.sin(cfg['mo1_bragg']) # Calculations for Mono
-        dy = diag*np.sin(2*(cfg['cm_pitch']+cfg['mo1_bragg']))
-        dz = diag*np.cos(2*(cfg['cm_pitch']+cfg['mo1_bragg']))
-        beam['x'].append(bl.mo1.center[1]-dz/2) # Mono 1.1
-        beam['y'].append(bl.sourceHeight+np.tan(2*cfg['cm_pitch'])*(bl.mo1.center[1]-dz/2-bl.cm.center[1]))
-        beam['x'].append(bl.mo1.center[1]+dz/2) # Mono 1.2
-        beam['y'].append(bl.sourceHeight+np.tan(2*cfg['cm_pitch'])*(bl.mo1.center[1]-dz/2-bl.cm.center[1])+dy)
-        beam['x'].append(bl.fm.center[1]) # FM
-        beam['y'].append(bl.sourceHeight+np.tan(2*cfg['cm_pitch'])*(bl.fm.center[1]-bl.cm.center[1]-dz)+dy)
-        beam['x'].append(cfg['smpl']) # Experiment
-        beam['y'].append(bl.sourceHeight+np.tan(2*cfg['cm_pitch'])*(bl.fm.center[1]-bl.cm.center[1]-dz)+dy+np.tan(2*(cfg['cm_pitch']-cfg['fm_rotx']))*(cfg['smpl']-bl.fm.center[1]))
-    elif cfg['mo1_mode'] == 'Pinkbeam':
-        beam['x'].append(bl.fm.center[1]) # FM
-        beam['y'].append(bl.sourceHeight+np.tan(2*cfg['cm_pitch'])*(bl.fm.center[1]-bl.cm.center[1]))
-        beam['x'].append(cfg['smpl']) # Experiment
-        beam['y'].append(bl.sourceHeight+np.tan(2*cfg['cm_pitch'])*(bl.fm.center[1]-bl.cm.center[1])+np.tan(2*(cfg['cm_pitch']-cfg['fm_rotx']))*(cfg['smpl']-bl.fm.center[1]))
-
-    dy_fm_ex = beam['y'][-1] - beam['y'][-2]
-    dz_fm_ex = beam['x'][-1] - beam['x'][-2]
-    dz_fm_win = bl.ehWindow.center[1] - beam['x'][-2]
-    h_at_win = beam['y'][-2] + dy_fm_ex / dz_fm_ex * dz_fm_win
-
-    beam['heightWindow'] = h_at_win
-
-    return beam

debye_bec/bec_widgets/widgets/digital_twin/calc_surfaces.py

@@ -1,131 +0,0 @@
-import os
-import re
-import numpy as np
-from bec_lib import bec_logger
-
-logger = bec_logger.logger
-
-os.environ["USE_XRT"] = "False"
-import debye_bec.bec_widgets.widgets.x01da_parameters as bl
-
-def calc_surfaces(cfg):
-
-    out = {
-        'cm': {'x': [], 'y': []},
-        'mo1_1': {'x': [], 'y': []},
-        'mo1_2': {'x': [], 'y': []},
-        'fm': {'x': [], 'y': []},
-    }
-
-    # Collimating mirror
-    l = 2 * bl.cm.center[1] * np.tan(cfg['v_acc'])/np.sin(cfg['cm_pitch'])
-
-    w1 = 2 * (bl.cm.center[1]-l/2) * np.tan(cfg['h_acc'])
-    w2 = 2 * (bl.cm.center[1]+l/2) * np.tan(cfg['h_acc'])
-
-    index = bl.cm.surface.index(cfg['cm_stripe'])
-    cen = (bl.cm.limOptX[0][index] + bl.cm.limOptX[1][index]) / 2
-
-    if cfg['cm_trx'] is not None:
-        cen = cfg['cm_trx']
-
-    out['cm']['x'] = [cen-w1/2, cen-w2/2, cen+w2/2, cen+w1/2]
-    out['cm']['y'] = [-l/2, l/2, l/2, -l/2]
-
-
-    # Monochromator
-    # calculate height of center of first crystal surface
-    c = bl.mo1.heightOffset*1/np.sin(cfg['mo1_bragg'])-bl.mo1.rotOffset*1/np.tan(cfg['mo1_bragg'])
-    e = bl.mo1.xtalGap[0]/np.tan(cfg['mo1_bragg'])-c
-
-    xtal = cfg['mo1_xtal'].translate(str.maketrans('', '', '()')) # Remove brackets from xtal name to conform with parameters
-    index = bl.mo1.xtal.index(xtal)
-
-    xtalPos = bl.mo1.xtalOffsetX[index]
-    xtalLength1 = bl.mo1.xtalLength1[index]
-    xtalLength2 = bl.mo1.xtalLength2[index]
-
-    widthBeam = 2 * bl.mo1.center[1] * np.tan(cfg['h_acc'])
-        
-    heightBeam = 2 * bl.cm.center[1] * np.tan(cfg['v_acc'])
-    w = heightBeam / np.sin(cfg['mo1_bragg'])
-
-    if cfg['mo1_mode'] in 'Monochromatic':
-        out['mo1_1']['x'] = [xtalPos-widthBeam/2, xtalPos+widthBeam/2, xtalPos+widthBeam/2, xtalPos-widthBeam/2]
-        out['mo1_1']['y'] = [xtalLength1/2-c-w/2, xtalLength1/2-c-w/2, xtalLength1/2-c+w/2, xtalLength1/2-c+w/2]
-        out['mo1_2']['x'] = [xtalPos-widthBeam/2, xtalPos+widthBeam/2, xtalPos+widthBeam/2, xtalPos-widthBeam/2]
-        out['mo1_2']['y'] = [-xtalLength2/2+e-w/2, -xtalLength2/2+e-w/2, -xtalLength2/2+e+w/2, -xtalLength2/2+e+w/2]
-    else: # Pinkbeam
-        out['mo1_1']['x'] = []
-        out['mo1_1']['y'] = []
-        out['mo1_2']['x'] = []
-        out['mo1_2']['y'] = []
-
-    # Focusing mirror
-    if cfg['fm_stripe'] in ('Rh (toroid)', 'Pt (toroid)'):
-        surface = bl.fm.surfaceToroid
-        stripe = re.sub(r'\s*\(.*?\)', '', cfg['fm_stripe']).strip()
-        index = surface.index(stripe)
-        off = (bl.fm.limOptXToroid[0][index] + bl.fm.limOptXToroid[1][index]) / 2
-        r = bl.fm.r[index]
-    else:
-        surface = bl.fm.surfaceFlat
-        stripe = re.sub(r'\s*\(.*?\)', '', cfg['fm_stripe']).strip()
-        index = surface.index(stripe)
-        off = (bl.fm.limOptXFlat[0][index] + bl.fm.limOptXFlat[1][index]) / 2
-        r = bl.fm.r[index]
-    if cfg['fm_trx'] is not None:
-        off = cfg['fm_trx']
-
-    widthBeam = 2 * bl.fm.center[1] * np.tan(cfg['h_acc'])
-
-    if cfg['fm_stripe'] in ('Rh (toroid)', 'Pt (toroid)'):
-
-        l = heightBeam/np.sin(cfg['fm_rotx'])
-        alpha = np.arccos(1-widthBeam**2/(2*r**2))    
-        h = r-(r*np.cos(alpha/2))
-        z = h/np.tan(cfg['fm_rotx'])
-
-        x = [off-widthBeam/2, off-widthBeam/2]
-        y = [l/2-z/2, -l/2-z/2]
-
-        # logger.info(f'stripe: {cfg["fm_stripe"]}')
-        # logger.info(f'fm_rotx: {cfg["fm_rotx"]}')
-        # logger.info(f'h: {h}')
-        # logger.info(f'z: {z}')
-        # logger.info(f'r: {r}')
-
-        res = 20
-        xElipse = np.linspace(0, np.pi, res)
-        yElipse = np.linspace(0, np.pi, res)
-        xElipse = [-widthBeam/2*np.cos(i)+off for i in xElipse]
-        yElipse = [widthBeam*np.sin(i)*z/widthBeam-l/2-z/2 for i in yElipse]
-
-        x.extend(xElipse)
-        y.extend(yElipse)
-
-        x.extend([off+widthBeam/2, off+widthBeam/2])
-        y.extend([-l/2-z/2, l/2-z/2])
-
-        res = 50
-        xElipse = np.linspace(np.pi, 0, res)
-        yElipse = np.linspace(np.pi, 0, res)
-        xElipse = [-widthBeam/2*np.cos(i)+off for i in xElipse]
-        yElipse = [widthBeam*np.sin(i)*z/widthBeam+l/2-z/2 for i in yElipse]
-
-        x.extend(xElipse)
-        y.extend(yElipse)
-
-        out['fm']['x'] = x
-        out['fm']['y'] = y
-
-    else: # flat surface, no toroid
-        l = heightBeam/np.sin(cfg['fm_rotx'])
-
-        w1 = 2 * (bl.fm.center[1]-l/2) * np.tan(cfg['h_acc'])
-        w2 = 2 * (bl.fm.center[1]+l/2) * np.tan(cfg['h_acc'])
-
-        out['fm']['x'] = [off-w1/2, off+w1/2, off+w2/2, off-w2/2]
-        out['fm']['y'] = [-l/2, -l/2, l/2, l/2]
-
-    return out

debye_bec/bec_widgets/widgets/digital_twin/calc_varia.py

@@ -1,206 +0,0 @@
-import re
-import numpy as np
-from scipy.interpolate import UnivariateSpline
-from xrt.backends.raycing.physconsts import CHeVcm, AVOGADRO
-from bec_lib import bec_logger
-
-import debye_bec.bec_widgets.widgets.x01da_parameters as bl
-
-logger = bec_logger.logger
-
-def sldi_gap_to_acc(sldi_gapx, sldi_gapy):
-    d1 = bl.feSlits.center1[1]
-    d2 = bl.feSlits.center2[1]
-    h_acc = np.tan(sldi_gapx / (d2 + d1))
-    v_acc = np.tan(sldi_gapy / (d2 + d1))
-
-    # h_acc = np.tan(sldi_gapx / (2 * d1))
-    # v_acc = np.tan(sldi_gapy / (2 * d1))
-    return h_acc, v_acc
-
-def cm_trx_to_stripe(cm_trx):
-    cm_stripe = None
-    for name, low, high in zip(bl.cm.surface, bl.cm.limOptX[0], bl.cm.limOptX[1]):
-        if low <= cm_trx <= high:
-            cm_stripe = name
-    return cm_stripe
-
-def fm_trx_to_stripe(fm_trx):
-    fm_stripe = None
-    for name, low, high in zip(bl.fm.surfaceFlat, bl.fm.limOptXFlat[1], bl.fm.limOptXFlat[0]):
-        if low <= fm_trx <= high:
-            fm_stripe = name + ' (flat)'
-    for name, low, high in zip(bl.fm.surfaceToroid, bl.fm.limOptXToroid[1], bl.fm.limOptXToroid[0]):
-        if low <= fm_trx <= high:
-            fm_stripe = name + ' (toroid)'
-    return fm_stripe
-
-def mo1_energy_resolution(xtal, energy):
-    index = bl.mo1.xtal.index(xtal)
-    crystal = bl.mo1.material1[index]
-
-    dtheta = np.linspace(-30, 90, 601)
-    theta = crystal.get_Bragg_angle(energy) + dtheta * 1e-6
-    refl = np.abs(crystal.get_amplitude(energy, np.sin(theta))[0])**2  # single crystal
-
-    refl2 = refl**2  # DCM with parallel crystals
-
-    # FWHM of the DCM curve
-    spline = UnivariateSpline(dtheta, refl2 - refl2.max()/2, s=0)
-    r1, r2 = spline.roots()
-    fwhm_rad = (r2 - r1) * 1e-6  # µrad → rad
-
-    # Energy resolution
-    theta_B = crystal.get_Bragg_angle(energy)
-    dE_over_E = fwhm_rad / np.tan(theta_B)
-    dE = dE_over_E * energy
-
-    # logger.info(f"DCM FWHM      : {r2-r1:.2f} µrad")
-    # logger.info(f"ΔE/E          : {dE_over_E:.2e}")
-    # logger.info(f"ΔE            : {dE:.3f} eV  at {E} eV")
-
-    return dE
-
-def cm_reflectivity(cm_stripe, cm_pitch, energy):
-    index = bl.cm.surface.index(cm_stripe)
-    rs, rp = bl.cm.material[index].get_amplitude(
-        energy,
-        np.sin(cm_pitch)
-    )[0:2]
-    refl = abs(rs)**2
-    return refl
-
-def fm_reflectivity(fm_stripe, fm_pitch, energy):
-    if fm_stripe in ('Rh (toroid)', 'Pt (toroid)'):
-        surface = bl.fm.surfaceToroid
-        material = bl.fm.materialToroid
-        stripe = re.sub(r'\s*\(.*?\)', '', fm_stripe).strip()
-        index = surface.index(stripe)
-    else:
-        surface = bl.fm.surfaceFlat
-        material = bl.fm.materialFlat
-        stripe = re.sub(r'\s*\(.*?\)', '', fm_stripe).strip()
-        index = surface.index(stripe)
-    rs, rp = material[index].get_amplitude(
-        energy,
-        np.sin(fm_pitch)
-    )[0:2]
-    refl = abs(rs)**2
-    return refl
-
-def mo1_bragg_angle(mo_mode, d_spacing, energy, cm_pitch):
-    H = 6.62606957E-34
-    E = 1.602176634E-19
-    C = 299792458
-    wl = C * H / (E * energy)
-    val = wl / (2 * d_spacing * 1e-10)
-    bragg_angle = 0
-    if val > -1 and val < 1:
-        bragg_angle = np.asin(val)
-    if mo_mode in 'Monochromatic':
-        # Add 2x CM pitch to the bragg angle
-        bragg_angle_cor =  ((2 * cm_pitch) + bragg_angle)
-    elif mo_mode in 'Pinkbeam':
-        # Align xtal surfaces parallel to beam
-        bragg_angle_cor =  (2 * cm_pitch)
-    return bragg_angle, bragg_angle_cor
-
-def fm_ideal_pitch(fm_focus, fm_stripe, smpl, sldi_hacc=None, sldi_vacc=None, fm_focx=None, fm_focy=None):
-    p = bl.fm.center[1] # posFM
-    q = smpl - bl.fm.center[1] # dist posFM to posEX
-    if fm_focus in 'Defocused':
-        a = 2 * np.tan(sldi_hacc) * bl.fm.center[1] # Beam width at focusing mirror
-        b = 2 * np.tan(sldi_vacc) * bl.cm.center[1] # Beam height at focusing mirror (collimated beam)
-        x = fm_focx
-        y = fm_focy
-        qx = q + x * p / a
-        qy = q + y * p / b
-        f = (p * qx) / (p + qx) # focal length
-    else: # Calculate for focused beam on sample in "manual" and "focused" mode
-        qy = None
-        f = (p * q) / (p + q) # focal length
-    pitch = 0
-    if 'Rh' in fm_stripe:
-        pitch = np.arcsin(bl.fm.r[0]/(2*f))# ideal pitch for FM
-    if 'Pt' in fm_stripe:
-        pitch = np.arcsin(bl.fm.r[1]/(2*f))  # ideal pitch for FM
-    return pitch, qy
-
-def cm_critical_angle(cm_stripe, energy):
-    if cm_stripe in 'Si':
-        stripe = bl.stripeSi
-    elif cm_stripe in 'Pt':
-        stripe = bl.stripePt
-    elif cm_stripe in 'Rh':
-        stripe = bl.stripeRh
-    else:
-        raise Exception(f'Stripe {stripe} not found in beamline parameters!')
-    w = CHeVcm/100/energy # convert energy [eV] to wavelength [m]
-    # Calculate critical angle for mirror
-    f1 = stripe.elements[0].Z + np.real(stripe.elements[0].get_f1f2(energy))
-    numberDensity = stripe.rho*1e3*AVOGADRO/(stripe.elements[0].mass/1e3)
-    criticalAngle = np.sqrt(numberDensity*2.8179e-15*w**2*f1/np.pi)
-    return criticalAngle
-
-
-def mirror_surface_geometries(mirror):
-    if mirror in "cm":
-        surface = bl.cm.surface
-        limOptX = bl.cm.limOptX
-        limOptY = bl.cm.limOptY
-    elif mirror in 'fm_toroid':
-        surface = bl.fm.surfaceToroid
-        limOptX = bl.fm.limOptXToroid
-        limOptY = bl.fm.limOptYToroid
-    elif mirror in 'fm_flat':
-        surface = bl.fm.surfaceFlat
-        limOptX = bl.fm.limOptXFlat
-        limOptY = bl.fm.limOptYFlat
-    else:
-        raise ValueError(f'Requested mirror {mirror} not available!')
-    geom = {}
-    for sf, lx, hx, ly, hy in zip(surface, limOptX[0], limOptX[1], limOptY[0], limOptY[1]):
-        geom[sf] = (lx, ly, hx-lx, hy-ly)
-    return geom
-
-def mo_surface_geometries(mo, plane):
-    if mo in 'mo1':
-        xtal = bl.mo1.xtal
-        xtal_width = bl.mo1.xtalWidth
-        xtal_offset_x = bl.mo1.xtalOffsetX
-        if plane == 0:
-            xtal_length = bl.mo1.xtalLength1
-        else:
-            xtal_length = bl.mo1.xtalLength2
-    else:
-        raise ValueError(f'Requested mono {mo} not available!')
-    geom = {}
-    for sf, w, offx, length in zip(xtal, xtal_width, xtal_offset_x, xtal_length):
-        geom[sf] = (offx-w/2, -length/2, w, length)
-    return geom
-
-def wall_geometries():
-    geom = []
-    for i, _ in enumerate(bl.walls.start):
-        geom.append([
-            bl.walls.start[i],
-            bl.walls.height[i][0],
-            bl.walls.end[i] - bl.walls.start[i],
-            bl.walls.height[i][1] - bl.walls.height[i][0],
-        ])
-    return geom
-
-def pipe_geometries():
-    pipes = []
-    for i, _ in enumerate(bl.vacuum_pipes.center):
-        top = bl.vacuum_pipes.center[i] + bl.vacuum_pipes.diameter[i]/2 + bl.sourceHeight
-        bottom = bl.vacuum_pipes.center[i] - bl.vacuum_pipes.diameter[i]/2 + bl.sourceHeight
-        pipes.append({
-            'x': np.array([bl.vacuum_pipes.start[i], bl.vacuum_pipes.end[i]]),
-            'y': np.array([top, top])
-        })
-        pipes.append({
-            'x': np.array([bl.vacuum_pipes.start[i], bl.vacuum_pipes.end[i]]),
-            'y': np.array([bottom, bottom])
-        })
-    return pipes

debye_bec/bec_widgets/widgets/digital_twin/digital_twin.pyproject

@@ -1 +0,0 @@
-{'files': ['digital_twin.py']}

debye_bec/bec_widgets/widgets/digital_twin/digital_twin_plugin.py

@@ -1,57 +0,0 @@
-# Copyright (C) 2022 The Qt Company Ltd.
-# SPDX-License-Identifier: LicenseRef-Qt-Commercial OR BSD-3-Clause
-
-from bec_widgets.utils.bec_designer import designer_material_icon
-from qtpy.QtDesigner import QDesignerCustomWidgetInterface
-from qtpy.QtWidgets import QWidget
-
-from debye_bec.bec_widgets.widgets.digital_twin.digital_twin import DigitalTwin
-
-DOM_XML = """
-<ui language='c++'>
-    <widget class='DigitalTwin' name='digital_twin'>
-    </widget>
-</ui>
-"""
-
-
-class DigitalTwinPlugin(QDesignerCustomWidgetInterface):  # pragma: no cover
-    def __init__(self):
-        super().__init__()
-        self._form_editor = None
-
-    def createWidget(self, parent):
-        if parent is None:
-           return QWidget()
-        t = DigitalTwin(parent)
-        return t
-
-    def domXml(self):
-        return DOM_XML
-
-    def group(self):
-        return ""
-
-    def icon(self):
-        return designer_material_icon(DigitalTwin.ICON_NAME)
-
-    def includeFile(self):
-        return "digital_twin"
-
-    def initialize(self, form_editor):
-        self._form_editor = form_editor
-
-    def isContainer(self):
-        return False
-
-    def isInitialized(self):
-        return self._form_editor is not None
-
-    def name(self):
-        return "DigitalTwin"
-
-    def toolTip(self):
-        return "DigitalTwin"
-
-    def whatsThis(self):
-        return self.toolTip()

debye_bec/bec_widgets/widgets/digital_twin/move_widget.py

@@ -1,511 +0,0 @@
-import time
-import random
-import threading
-
-# import qtawesome as qta
-from bec_qthemes import material_icon
-from bec_widgets.utils.colors import get_accent_colors
-from bec_lib import bec_logger
-
-from debye_bec.devices.absorber import STATUS as ABS_STATUS
-
-from qtpy.QtCore import Qt, QThread, Signal, QObject, Property, QPropertyAnimation
-from qtpy.QtWidgets import (
-    QGroupBox, QHBoxLayout, QVBoxLayout, QLabel, QPushButton,
-    QDoubleSpinBox, QFrame, QWidget, QApplication
-)
-from qtpy.QtGui import QTransform
-
-logger = bec_logger.logger
-
-class Status:
-    IN_POSITION = "in_position"          # green  mdi.check-circle
-    NOT_IN_POSITION = "not_in_position"  # orange mdi.close-circle
-    MOVING = "moving"                    # blue   mdi.loading  (spinning)
-    ERROR = "error"                      # red    mdi.alert-circle
-
-class StatusIcon(QWidget):
-    """
-    Displays a status icon using bec_qthemes Material Design Icons.
-    Handles its own spin animation for the MOVING state via QPropertyAnimation.
-    """
-
-    ICON_SIZE = 20
-
-    _ICON_MAP = {
-        Status.IN_POSITION:     ("check_circle", "#27ae60"),
-        Status.NOT_IN_POSITION: ("cancel", "#e6d922"),
-        Status.ERROR:           ("warning", "#e74c3c"),
-        Status.MOVING:          ("cycle", "#2980b9"),
-    }
-
-    def __init__(self, parent=None):
-        super().__init__(parent=parent)
-        self._status = None
-        self._rotation = 0.0
-
-        self._label = QLabel(self)
-        self._label.setFixedSize(self.ICON_SIZE, self.ICON_SIZE)
-        self._label.setAlignment(Qt.AlignCenter)
-        self.setFixedSize(self.ICON_SIZE, self.ICON_SIZE)
-
-        self._spin_anim = QPropertyAnimation(self, b"rotation")
-        self._spin_anim.setStartValue(0)
-        self._spin_anim.setEndValue(360)
-        self._spin_anim.setDuration(1000)
-        self._spin_anim.setLoopCount(-1)  # Loop indefinitely
-
-        self.set_status(Status.NOT_IN_POSITION)
-
-    def get_rotation(self):
-        return self._rotation
-
-    def set_rotation(self, angle):
-        self._rotation = angle
-        if self._current_pixmap_base is not None:
-            cx = self._current_pixmap_base.width() / 2
-            cy = self._current_pixmap_base.height() / 2
-            t = QTransform().translate(cx, cy).rotate(angle).translate(-cx, -cy)
-            self._label.setPixmap(self._current_pixmap_base.transformed(t, Qt.SmoothTransformation))
-
-    rotation = Property(float, get_rotation, set_rotation)
-
-    def set_status(self, status: str):
-        if status == self._status:
-            return
-        self._status = status
-
-        icon_name, color = self._ICON_MAP[status]
-        icon = material_icon(icon_name, size=(self.ICON_SIZE, self.ICON_SIZE), color=color, convert_to_pixmap=True)
-        self._current_pixmap_base = icon
-
-        if status == Status.MOVING:
-            self._spin_anim.start()
-        else:
-            self._spin_anim.stop()
-            self._label.setPixmap(icon)
-
-class MotionWorker(QObject):
-    """
-    Executes motion on the specified motor and includes some safety during
-    motion for certain motors.
-    """
-    position_changed = Signal(float)
-    error = Signal(bool) # True = error
-    finished = Signal(bool)   # True = reached target, False = stopped
-
-    def __init__(self, dev, motor, target_pos: float):
-        super().__init__()
-        self.dev = dev
-        self.motor = motor
-        self._target = target_pos
-        self._stop_flag = threading.Event()
-
-    def stop(self):
-        self._stop_flag.set()
-
-    # def run(self):
-    #     logger.info(f'Would run motor {self.motor}')
-    #     simulated_run_time = 3
-    #     start = time.time()
-    #     while (time.time() - start) < simulated_run_time:
-    #         if self._stop_flag.is_set():
-    #             break
-    #         time.sleep(0.01)
-
-    #     # self.motor.move(self._target, relative=False)
-    #     # while self.motor.motor_is_moving.get():
-    #     #     if self._stop_flag.is_set():
-    #     #         self.motor.motor_stop()
-    #     #     self.position_changed.emit(self.motor.read[self.name]['value'])
-    #     #     time.sleep(0.1)
-    #     self.finished.emit(True)
-
-    def run(self):
-        match self.motor:
-            case 'sldi_gapx' | 'sldi_gapy' | 'sldi_centerx' | 'sldi_centery':
-                self.motion()
-            case 'cm_trx':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['cm_roty'], 'abs_tol': 0.05}
-                ])
-            case 'cm_roty':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['cm_trx'], 'abs_tol': 0.05}
-                ])
-            case 'cm_try':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['cm_rotx'], 'abs_tol': 0.05},
-                    {'device': self.dev['cm_rotz'], 'abs_tol': 0.05},
-                ])
-            case 'cm_rotx':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['cm_try'], 'abs_tol': 0.05},
-                    {'device': self.dev['cm_rotz'], 'abs_tol': 0.05},
-                ])
-            case 'cm_rotz':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['cm_try'], 'abs_tol': 0.05},
-                    {'device': self.dev['cm_rotx'], 'abs_tol': 0.05},
-                ])
-            case 'cm_bnd':
-                p1 = (1/(self.dev.cm_bnd_radius.read()['cm_bnd_radius']['value']*1e3) + 0.0284)/2e-6
-                p2 = (1/(self._target*1e3) + 0.0284)/2e-6
-                self._target = p2 - p1
-                self.motion(relative=True, rb=
-                    {'device': self.dev['cm_bnd_radius']}
-                )
-            case 'mo1_try' | 'mo1_trx' | 'mo1_roty':
-                self.motion(abs_closed=True)
-            case 'mo1_bragg_angle':
-                self.motion()
-            case 'sl1_centery' | 'sl1_gapy' | 'bm1_try':
-                self.motion()
-            case 'fm_trx':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['fm_roty'], 'abs_tol': 0.05}
-                ])
-            case 'fm_roty':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['fm_trx'], 'abs_tol': 0.05}
-                ])
-            case 'fm_try':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['fm_rotx'], 'abs_tol': 0.05},
-                    {'device': self.dev['fm_rotz'], 'abs_tol': 0.05},
-                ])
-            case 'fm_rotx':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['fm_try'], 'abs_tol': 0.05},
-                    {'device': self.dev['fm_rotz'], 'abs_tol': 0.05},
-                ])
-            case 'fm_rotz':
-                self.motion(abs_closed=True, surveyed_axes=[
-                    {'device': self.dev['fm_try'], 'abs_tol': 0.05},
-                    {'device': self.dev['fm_rotx'], 'abs_tol': 0.05},
-                ])
-            case 'fm_bnd':
-                p1 = (1/(self.dev.fm_bnd_radius.read()['fm_bnd_radius']['value']*1e3) + 4.28e-5)/1.84e-9
-                p2 = (1/(self._target*1e3) + 4.28e-5)/1.84e-9
-                self._target = p2 - p1
-                self.motion(relative=True, rb=
-                    {'device': self.dev['fm_bnd_radius']}
-                )
-            case 'sl2_centery' | 'sl2_gapy' | 'bm2_try':
-                self.motion()
-            case 'ot_try' | 'ot_rotx' | 'ot_es1_trz':
-                self.motion()
-            case _:
-                logger.warning(f'Motor {self.motor} not integrated in digital twin!')
-
-    def motion(self, abs_closed=False, relative=False, rb=None, surveyed_axes = None):
-        """
-        Moves an axis while surverying a set of axes (if set).
-        Example surveyed_axes:
-            [{'device': bec_device_object, 'abs_tol': 0.1},]
-
-        Args:
-            surveyed_axes (list): List of dictionaries of devices
-        """
-        if abs_closed:
-            if self.dev.abs.status.get() == ABS_STATUS.OPEN:
-                status = self.dev.abs.close()
-                # TODO Set timeout to 0.001 and check if it actually raises (it should not start motion).
-                # Check of behavior of digital twin afterwards.
-                status.wait(timeout=5)
-        if surveyed_axes is not None:
-            for surv_ax in surveyed_axes:
-                surv_ax['name'] = surv_ax['device'].dotted_name
-                surv_ax['old_value'] = surv_ax['device'].read(cached=True)[surv_ax['name']]['value']
-        if rb is not None:
-            rb['name'] = rb['device'].dotted_name
-        self.dev[self.motor].move(self._target, relative=relative)
-        time.sleep(0.5)
-        while self.dev[self.motor].motor_is_moving.get():
-            if self._stop_flag.is_set():
-                self.dev[self.motor].stop()
-                self._stop_flag.clear()
-            if rb is not None:
-                self.position_changed.emit(rb['device'].read(cached=True)[rb['name']]['value'])
-            else:
-                self.position_changed.emit(self.dev[self.motor].read(cached=True)[self.motor]['value'])
-            if surveyed_axes is not None:
-                for surv_ax in surveyed_axes:
-                    fb = surv_ax['device'].read(cached=True)[surv_ax['name']]['value']
-                    if abs(fb - surv_ax['old_value']) > surv_ax['abs_tol']:
-                        self.dev[self.motor].stop()
-                        self.error.emit(1)
-                        break
-            time.sleep(0.1)
-        self.finished.emit(True)
-
-class MoveWidget(QWidget):
-    """
-    One motor stage control group containing:
-      - Target label  (target position)
-      - Feedback label (current position)
-      - Status icon    (bec_qthemes)
-      - Start / Stop button
-    """
-
-    def __init__(self, dev, motor, label: str = '', unit=None, decimals=3, deadband=0.0):
-        super().__init__()
-        self.fb = 0.0
-        self.target = 0
-        self.dev = dev
-        self.motor = motor
-        self.deadband = deadband
-        self.status = Status.IN_POSITION
-        self._thread: QThread | None = None
-        self._worker: MotionWorker | None = None
-
-        self.text_color = (0, 0, 0)
-
-        self.unit = unit
-        self.decimals = decimals
-
-        layout = QHBoxLayout(self)
-        layout.setContentsMargins(10, 0, 0, 0)
-        layout.setSpacing(0)
-
-        # Name
-        self.label = QLabel(label)
-        self.label.setFixedWidth(100)
-        self.label.setContentsMargins(0, 0, 10, 0)
-        self.label.setWordWrap(True)
-        layout.addWidget(self.label)
-
-        # Target
-        self.target_label = QLabel('-')
-        self.target_label.setFixedWidth(100)
-        layout.addWidget(self.target_label)
-
-        # Feedback
-        self.fb_label = QLabel('-')
-        self.fb_label.setFixedWidth(100)
-        layout.addWidget(self.fb_label)
-
-        # Status icon
-        self.status_icon = StatusIcon()
-        self.status_icon.setFixedWidth(30)
-        self.status_icon.setContentsMargins(0, 0, 10, 0)
-        layout.addWidget(self.status_icon)
-
-        # Start / Stop button
-        self.btn_action = QPushButton("Move")
-        self.btn_action.setFixedWidth(90)
-        self.btn_action.setFixedHeight(20)
-        self.btn_action.clicked.connect(self._on_button_clicked)
-        layout.addWidget(self.btn_action)
-        self.btn_mode = 'start'
-
-        self._apply_button_style("start")
-
-        self.apply_theme()
-
-    def apply_theme(self, theme=None):
-        if theme is None:
-            app = QApplication.instance()
-            theme = app.theme.theme # type: ignore
-
-        if theme == "light":
-            self.text_color = {'target': (79, 163, 224), 'fb': (240, 128, 60)}
-        else: # dark theme
-            self.text_color = {'target': (26, 111, 173), 'fb':  (212, 83, 10)}
-        r, g, b = self.text_color['target']
-        self.target_label.setStyleSheet(f'QLabel {{color: rgb({r}, {g}, {b})}}')
-        r, g, b = self.text_color['fb']
-        self.fb_label.setStyleSheet(f'QLabel {{color: rgb({r}, {g}, {b})}}')
-
-        if self.btn_mode == 'start':
-            self.btn_action.setStyleSheet(
-                f"QPushButton {{background-color: {get_accent_colors().success.name()}; color: white;}}"
-            )
-        else:
-            self.btn_action.setStyleSheet(
-                f"QPushButton {{background-color: {get_accent_colors().emergency.name()}; color: white;}}"
-            )
-
-    def set_target(self, target):
-        self.target = target
-        text = f'{target:.{int(self.decimals)}f}'
-        if self.unit is not None:
-            text = text + ' ' + self.unit
-        self.target_label.setText(text)
-        self._on_target_or_fb_changed()
-
-    def set_feedback(self, fb):
-        if self.status != Status.MOVING:
-            self.fb = fb
-            text = f'{fb:.{int(self.decimals)}f}'
-            if self.unit is not None:
-                text = text + ' ' + self.unit
-            self.fb_label.setText(text)
-            self._on_target_or_fb_changed()
-
-    def _apply_button_style(self, mode: str):
-        self.btn_mode = mode
-        if mode == "start":
-            self.btn_action.setText("Move")
-            self.btn_action.setStyleSheet(
-            f"QPushButton {{background-color: {get_accent_colors().success.name()}; color: white;}}"
-        )
-        else:  # stop
-            self.btn_action.setText("Stop")
-            self.btn_action.setStyleSheet(
-            f"QPushButton {{background-color: {get_accent_colors().emergency.name()}; color: white;}}"
-        )
-
-    def _set_status(self, status: str):
-        self.status = status
-        self.status_icon.set_status(status)
-
-    def _on_target_or_fb_changed(self):
-        """Re-evaluate in-position status whenever the target value changes."""
-        if self.status in (Status.ERROR, Status.MOVING):
-            return
-        if abs(self.fb - self.target) <= self.deadband:
-            self._set_status(Status.IN_POSITION)
-        else:
-            self._set_status(Status.NOT_IN_POSITION)
-
-    def _on_button_clicked(self):
-        if self._thread and self._thread.isRunning():
-            self._stop_motion()
-        else:
-            self._start_motion()
-
-    def _start_motion(self):
-        target = self.target
-        if abs(target - self.fb) <= self.deadband:
-            self._set_status(Status.IN_POSITION)
-            return
-
-        self._set_status(Status.MOVING)
-        self._apply_button_style("stop")
-
-        self._worker = MotionWorker(self.dev, self.motor, target)
-        self._thread = QThread()
-        self._worker.moveToThread(self._thread)
-
-        self._thread.started.connect(self._worker.run)
-        self._worker.position_changed.connect(self._on_position_changed)
-        self._worker.error.connect(self._on_error)
-        self._worker.error.connect(self._thread.quit)
-        self._worker.finished.connect(self._on_motion_finished)
-        self._worker.finished.connect(self._thread.quit)
-        self._thread.finished.connect(self._cleanup_thread)
-
-        self._thread.start()
-
-    def _on_error(self):
-        self._set_status(Status.ERROR)
-        self._apply_button_style("start")
-
-    def _stop_motion(self):
-        if self._worker:
-            self._worker.stop()
-
-    def _on_position_changed(self, pos: float):
-        self.fb = pos
-        text = f'{pos:.{int(self.decimals)}f}'
-        if self.unit is not None:
-            text = text + ' ' + self.unit
-        self.fb_label.setText(text)
-
-    def _on_motion_finished(self, reached: bool):
-        target = self.target
-        if self.status not in Status.ERROR:
-            if abs(self.fb - target) <= self.deadband:
-                self._set_status(Status.IN_POSITION)
-            else:
-                self._set_status(Status.NOT_IN_POSITION)
-        self._apply_button_style("start")
-
-    def _cleanup_thread(self):
-        if self._thread:
-            self._thread.deleteLater()
-            self._thread = None
-        if self._worker:
-            self._worker.deleteLater()
-            self._worker = None
-
-    def shutdown(self):
-        if self._worker:
-            self._worker.stop()
-        if self._thread:
-            self._thread.quit()
-            self._thread.wait(2000)  # max 2 s grace period
-
-class AbsorberWidget(QWidget):
-    """
-    Control of the frontend absorber (only open)
-    """
-
-    def __init__(self, absorber, label: str = 'Absorber'):
-        super().__init__()
-        self.absorber = absorber
-        self.fb = False
-        self.text_color = (0, 0, 0)
-
-        layout = QHBoxLayout(self)
-        layout.setContentsMargins(10, 0, 0, 0)
-        layout.setSpacing(0)
-
-        # Name
-        self.label = QLabel(label)
-        self.label.setFixedWidth(100)
-        self.label.setContentsMargins(0, 0, 10, 0)
-        self.label.setWordWrap(True)
-        layout.addWidget(self.label)
-
-        # Blank
-        self.blank_label = QLabel('')
-        self.blank_label.setFixedWidth(100)
-        layout.addWidget(self.blank_label)
-
-        # Feedback
-        self.fb_label = QLabel('-')
-        self.fb_label.setFixedWidth(100)
-        layout.addWidget(self.fb_label)
-
-        # Blank icon
-        self.blank_icon = QLabel('')
-        self.blank_icon.setFixedWidth(30)
-        self.blank_icon.setContentsMargins(0, 0, 10, 0)
-        layout.addWidget(self.blank_icon)
-
-        # Open
-        self.btn_action = QPushButton("Open")
-        self.btn_action.setFixedWidth(90)
-        self.btn_action.setFixedHeight(20)
-        self.btn_action.clicked.connect(self._on_button_clicked)
-        layout.addWidget(self.btn_action)
-
-    def set_feedback(self, fb: bool):
-        self.fb = fb
-        if fb:
-            self.fb_label.setText('Open')
-            self.fb_label.setStyleSheet(
-                f"QLabel {{color: {get_accent_colors().success.name()}}}"
-            )
-        else:
-            self.fb_label.setText('Closed')
-            self.fb_label.setStyleSheet(
-                f"QLabel {{color: {get_accent_colors().emergency.name()}}}"
-            )
-
-    def enable_open(self, enable: bool = False):
-        if enable:
-            self.btn_action.setStyleSheet(
-                f"QPushButton {{background-color: {get_accent_colors().success.name()}; color: white;}}"
-            )
-            self.btn_action.setEnabled(True)
-        else:  # disabled
-            self.btn_action.setStyleSheet(
-                "QPushButton {{background-color: rgb(120, 120, 120); color: white;}}"
-            )
-            self.btn_action.setDisabled(True)
-
-    def _on_button_clicked(self):
-        self.absorber.open()

debye_bec/bec_widgets/widgets/digital_twin/register_digital_twin.py

@@ -1,15 +0,0 @@
-def main():  # pragma: no cover
-    from qtpy import PYSIDE6
-
-    if not PYSIDE6:
-        print("PYSIDE6 is not available in the environment. Cannot patch designer.")
-        return
-    from PySide6.QtDesigner import QPyDesignerCustomWidgetCollection
-
-    from debye_bec.bec_widgets.widgets.digital_twin.digital_twin_plugin import DigitalTwinPlugin
-
-    QPyDesignerCustomWidgetCollection.addCustomWidget(DigitalTwinPlugin())
-
-
-if __name__ == "__main__":  # pragma: no cover
-    main()

debye_bec/bec_widgets/widgets/qt_widgets.py

@@ -1,272 +0,0 @@
-
-from functools import partial
-# pylint: disable=E0611
-from qtpy.QtWidgets import (
-    QWidget, QVBoxLayout, QHBoxLayout, QLabel, QLineEdit,
-    QPushButton, QGroupBox, QComboBox, QApplication, QDoubleSpinBox
-)
-from qtpy.QtGui import QFont
-from qtpy.QtCore import Qt
-
-from bec_widgets.utils.colors import get_accent_colors
-
-class Group(QGroupBox):
-    def __init__(self, label, widgets):
-        super().__init__(label)
-        self.layout = QVBoxLayout(self) # type: ignore
-        for widget in widgets:
-            self.layout.addWidget(widget) # type: ignore
-
-class NumberIndicator(QWidget):
-    def __init__(self, label='', unit=None, highlight=False, decimals=3):
-        super().__init__()
-        layout = QHBoxLayout(self)
-        layout.setContentsMargins(10, 0, 0, 0)
-        layout.setSpacing(0)
-        self.label = QLabel(label)
-        self.label.setFixedWidth(140)
-        self.label.setContentsMargins(0, 0, 10, 0)
-        self.label.setWordWrap(True)
-        layout.addWidget(self.label)
-        self.val = QLabel('-')
-        self.val.setAlignment(Qt.AlignTop) # type: ignore
-        # self.val.setFixedWidth(140)
-        layout.addWidget(self.val)
-        self.unit = unit
-        self.highlight = highlight
-        self.decimals = decimals
-        self.number = 0
-        if highlight:
-            font = QFont()
-            font.setBold(True)
-            font.setPointSize(14)
-            self.label.setFont(font)
-            self.val.setFont(font)
-
-    def value(self) -> float:
-        return self.number
-
-    def setLabel(self, label) -> None:
-        self.label.setText(label)
-
-    def setValue(self, number):
-        self.number = number
-        text = f'{number:.{int(self.decimals)}f}'
-        if self.unit is not None:
-            text = text + ' ' + self.unit
-        self.val.setText(text)
-
-class InputNumberField(QWidget):
-    def __init__(self, identifier='', label='', unit=None, prefix=None, init=0.0, decimals=1, single_step=0.1, ll=-1e6, hl=1e6):
-        super().__init__()
-        layout = QHBoxLayout(self)
-        layout.setContentsMargins(10, 0, 0, 0)
-        layout.setSpacing(0)
-        self.identifier = identifier
-        self.label = QLabel(label)
-        self.label.setFixedWidth(140)
-        self.label.setContentsMargins(0, 0, 10, 0)
-        self.label.setWordWrap(True)
-        layout.addWidget(self.label)
-        self.val = QDoubleSpinBox()
-        self.val.setRange(ll, hl)
-        self.val.setDecimals(decimals)
-        self.val.setSingleStep(single_step)
-        self.val.setValue(init)
-        if unit is not None:
-            self.val.setSuffix(' ' + unit)
-        if prefix is not None:
-            self.val.setPrefix(prefix + ' ')
-        # self.val.setFixedWidth(140)
-        layout.addWidget(self.val)
-
-    def set_number(self, number):
-        self.val.setValue(number)
-
-    def has_focus(self) -> bool:
-        return self.val.hasFocus()
-    
-    def value(self) -> float:
-        return self.val.value()
-
-    def value_changed_connect(self, func):
-        """Connect a function to the Enter/Return key press."""
-        self.val.valueChanged.connect(
-            partial(func, identifier=self.identifier, value_obj=self.val, value=lambda: self.val.value())
-        )
-
-class ComboBox(QWidget):
-    def __init__(self, identifier='', label='', enums=[]):
-        super().__init__()
-        layout = QHBoxLayout(self)
-        layout.setContentsMargins(10, 0, 0, 0)
-        layout.setSpacing(0)
-        self.identifier = identifier
-        self.label = QLabel(label)
-        self.label.setFixedWidth(140)
-        self.label.setContentsMargins(0, 0, 10, 0)
-        self.label.setWordWrap(True)
-        layout.addWidget(self.label)
-        self.value = QComboBox()
-        for entry in enums:
-            self.value.addItem(entry)
-        layout.addWidget(self.value)
-
-    def set_current_text(self, text):
-        self.value.setCurrentText(text)
-
-    def currentText(self) -> str:
-        return self.value.currentText()
-
-    def has_focus(self) -> bool:
-        return QApplication.focusWidget() is self.value.view()
-
-    def activated_connect(self, func):
-        """Connect a function to the Enter/Return key press."""
-        self.value.activated.connect(
-            partial(func, identifier=self.identifier, value_obj=self.value, value=lambda: self.value.currentText())
-        )
-
-    def setDisabled(self, disable):
-        self.value.setDisabled(disable)
-
-class Button(QWidget):
-    def __init__(self, label=None, label_button:str='', enabled=False):
-        super().__init__()
-        layout = QHBoxLayout(self)
-        layout.setContentsMargins(10, 0, 0, 0)
-        layout.setSpacing(0)
-        if label is not None:
-            self.label = QLabel(label)
-            self.label.setFixedWidth(140)
-            layout.addWidget(self.label)
-        self.button = QPushButton(label_button)
-        if label is not None:
-            self.button.setFixedWidth(160)
-        self.enable_button(enabled)
-        layout.addWidget(self.button)
-
-    def clicked_connect(self, func):
-        """Connect a function to the button press."""
-        self.button.clicked.connect(func)
-
-    def enable_button(self, enable: bool = False):
-        if enable:
-            self.button.setStyleSheet(
-                f"QPushButton {{background-color: {get_accent_colors().default.name()}; color: white;}}"
-            )
-            self.button.setEnabled(True)
-        else:  # disabled
-            self.button.setStyleSheet(
-                "QPushButton {{background-color: rgb(120, 120, 120); color: white;}}"
-            )
-            self.button.setDisabled(True)
-
-    def setText(self, text):
-        self.button.setText(text)
-
-# class TextIndicator(QWidget):
-#     def __init__(self, label, unit=None, highlight=False):
-#         super().__init__()
-#         layout = QHBoxLayout(self)
-#         layout.setContentsMargins(10, 0, 0, 0)
-#         layout.setSpacing(0)
-#         self.label = QLabel(label)
-#         self.label.setFixedWidth(150)
-#         layout.addWidget(self.label)
-#         self.value = QLabel('-')
-#         self.value.setFixedWidth(160)
-#         layout.addWidget(self.value)
-#         self.unit = unit
-#         self.highlight = highlight
-#         if highlight:
-#             font = QFont()
-#             font.setBold(True)
-#             font.setPointSize(14)
-#             self.label.setFont(font)
-#             self.value.setFont(font)
-
-#     def set_text(self, text):
-#         if self.unit is not None:
-#             text = text + ' ' + self.unit
-#         self.value.setText(text)
-
-# class Button(QWidget):
-#     def __init__(self, label, label_button):
-#         super().__init__()
-#         layout = QHBoxLayout(self)
-#         layout.setContentsMargins(10, 0, 0, 0)
-#         layout.setSpacing(0)
-#         self.label = QLabel(label)
-#         self.label.setFixedWidth(150)
-#         layout.addWidget(self.label)
-#         self.button = QPushButton(label_button)
-#         self.button.setStyleSheet("color: black; background-color: dodgerblue;")
-#         self.button.setFixedWidth(160)
-#         layout.addWidget(self.button)
-
-#     def set_on_press(self, func):
-#         """Connect a function to the button press."""
-#         self.button.clicked.connect(func)
-
-#     def enable_button(self):
-#         self.button.setEnabled(True)
-#         self.button.setStyleSheet("color: black; background-color: dodgerblue;")
-
-#     def disable_button(self):
-#         self.button.setEnabled(False)
-#         self.button.setStyleSheet("color: black; background-color: grey;")
-
-#     def set_button_text(self, text):
-#         self.button.setText(text)
-
-# class LED(QWidget):
-#     def __init__(self, states, colors, label):
-#         super().__init__()
-#         self.states = states
-#         self.colors = colors
-#         layout = QHBoxLayout(self)
-#         layout.setContentsMargins(10, 0, 0, 0)
-#         layout.setSpacing(0)
-#         self.label = QLabel(label)
-#         self.label.setFixedWidth(150)
-#         layout.addWidget(self.label)
-#         self.led = QLabel()
-#         self.led.setFixedWidth(160)
-#         layout.addWidget(self.led)
-
-#     def apply_color(self, val):
-#         color = self.colors[self.states.index(val)]
-#         self.led.setStyleSheet(f"background-color: {color}; border: 1px solid black;")
-
-# class InputTextField(QWidget):
-#     def __init__(self, topic, label):
-#         super().__init__()
-#         self.topic = topic
-#         layout = QHBoxLayout(self)
-#         layout.setContentsMargins(10, 0, 0, 0)
-#         layout.setSpacing(0)
-#         self.label = QLabel(label)
-#         self.label.setFixedWidth(140)
-#         self.label.setContentsMargins(0, 0, 10, 0)
-#         self.label.setWordWrap(True)
-#         layout.addWidget(self.label)
-#         self.val = QLineEdit()
-#         self.val.setPlaceholderText('0')
-#         # self.val.setFixedWidth(140)
-#         layout.addWidget(self.val)
-
-#     def set_text(self, text):
-#         self.val.setText(text)
-
-#     def has_focus(self) -> bool:
-#         return self.val.hasFocus()
-
-#     def text(self) -> str:
-#         return self.val.text()
-
-#     def set_on_return(self, func):
-#         """Connect a function to the Enter/Return key press."""
-#         self.val.returnPressed.connect(
-#             partial(func, self.val, self.topic, lambda: self.val.text())
-#         )

debye_bec/bec_widgets/widgets/x01da_offsets.yaml

@@ -1,50 +0,0 @@
-cm_try:
-  offset: 0.15
-
-mo1_trx:
-  modifier:
-    axis: mo1_trx
-    range: [[-30, -0.1], [0.1, 30]]
-  offset: [0, 2.21]
-
-mo1_try:
-  modifier:
-    axis: mo1_trx
-    range: [[-30, -0.1], [0.1, 30]]
-  offset: [0, -1.6]
-
-sl1_centery:
-  offset: -1.8
-
-fm_trx:
-  modifier:
-    axis: fm_trx
-    range: [[-66, -31], [-24, 7], [11, 31], [38, 66]]
-  offset: [0, 0, 0, -0.16]
-
-fm_try:
-  modifier:
-    axis: fm_trx
-    range: [[-66, -31], [-24, 7], [11, 31], [38, 66]]
-  offset: [0, 0, 0, -0.45]
-
-fm_rotx:
-  modifier:
-    axis: fm_trx
-    range: [[-66, -31], [-24, 7], [11, 31], [38, 66]]
-  offset: [0, 0, 0, 0.063]
-
-fm_roty:
-  modifier:
-    axis: fm_trx
-    range: [[-66, -31], [-24, 7], [11, 31], [38, 66]]
-  offset: [0, 0, 0, -0.04]
-
-sl2_centery:
-  offset: 1.2
-
-ot_try:
-  offset: 0
-
-ot_rotx:
-  offset: 0

debye_bec/bec_widgets/widgets/x01da_parameters.py

@@ -1,311 +0,0 @@
-"""
-X01DA / Debye Beamline Parameters.
-This file describes the parameter of each component of the Debye beamline
-to be used for raytracing and geometrical calculations.
-"""
-
-import os
-import numpy as np
-from collections import namedtuple
-
-import xrt.backends.raycing.materials as rm
-
-# if os.environ.get("USE_XRT", "True").lower() in ("1", "true", "yes"):
-#     import xrt.backends.raycing.materials as rm  # type: ignore
-# else:
-#     class _DummyClass:
-#         def __init__(self, *args, **kwargs):
-#             pass
-#     class _DummyMaterials:
-#         Material = _DummyClass
-#         CrystalSi = _DummyClass
-#     rm = _DummyMaterials()
-
-# XRT definitions
-filterBeryl     = rm.Material('Be', rho=1.85,  kind='plate') # pyright: ignore[reportArgumentType]
-filterDiamond   = rm.Material('C',  rho=3.52,  kind='plate') # pyright: ignore[reportArgumentType]
-filterGraphite  = rm.Material('C',  rho=2.266, kind='plate') # pyright: ignore[reportArgumentType]
-
-stripeSi    = rm.Material('Si', rho=2.33) # pyright: ignore[reportArgumentType]
-stripePt    = rm.Material('Pt', rho=21.45) # pyright: ignore[reportArgumentType]
-stripeRh    = rm.Material('Rh', rho=12.41) # pyright: ignore[reportArgumentType]
-stripeCr    = rm.Material('Cr', rho=7.14) # pyright: ignore[reportArgumentType]
-stripePyrex = rm.Material('Si', rho=2.20) # Use Si as bare element and the density of SiO2 # pyright: ignore[reportArgumentType]
-
-si111_1 = rm.CrystalSi(hkl=(1, 1, 1), tK=77) # first xtal surface
-si311_1 = rm.CrystalSi(hkl=(3, 1, 1), tK=77) # first xtal surface
-si333_1 = rm.CrystalSi(hkl=(3, 3, 3), tK=77) # first xtal surface
-si511_1 = rm.CrystalSi(hkl=(5, 1, 1), tK=77) # first xtal surface
-si111_2 = rm.CrystalSi(hkl=(1, 1, 1), tK=77) # second xtal surface
-si311_2 = rm.CrystalSi(hkl=(3, 1, 1), tK=77) # second xtal surface
-si333_2 = rm.CrystalSi(hkl=(3, 3, 3), tK=77) # second xtal surface
-si511_2 = rm.CrystalSi(hkl=(5, 1, 1), tK=77) # second xtal surface
-
-filterDiamond = rm.Material('C', rho=3.52, kind='plate') # pyright: ignore[reportArgumentType]
-filterBe = rm.Material('Be', rho=1.85, kind='plate') # pyright: ignore[reportArgumentType]
-filterSi3N4 = rm.Material(['Si', 'N'], quantities=[3, 4], rho=3.44, kind='plate') # pyright: ignore[reportArgumentType]
-filterAl = rm.Material('Al', rho=2.69, kind='plate') # pyright: ignore[reportArgumentType]
-filterGraphite = rm.Material('C', rho=2.266, kind='plate') # pyright: ignore[reportArgumentType]
-
-# General parameters
-sourceHeight = 0
-
-#Synchrotron
-synchrotron = namedtuple('synchrotron', ['eE', 'eI', 'eEspread',
-    'eEpsilonX', 'eEpsilonZ', 'betaX', 'betaZ'])
-
-sls1 = synchrotron(
-    eE = 2.4,
-    eI = 0.4,
-    eEspread=0.878e-3,
-    eEpsilonX=5.63,
-    eEpsilonZ=0.007,
-    betaX=0.45,
-    betaZ=14.4,
-    )
-    
-sls2 = synchrotron(
-    eE=2.7,
-    eI=0.4,
-    eEspread=1.147e-3,
-    eEpsilonX=0.156,
-    eEpsilonZ=0.01,
-    betaX=0.18,
-    betaZ=4.6,
-    )
-    
-# Source
-bendingMagnet = namedtuple('bendingMagnet', ['name', 'center', 'sync', 'B0'])    
-
-sls1_14t = bendingMagnet(
-    name='FE-BM-SLS1-1.4T',
-    center=(0, 0, 0),
-    sync=sls1,
-    B0=1.4,)
-    
-sls2_21t = bendingMagnet(
-    name='FE-BM-SLS2-2.1T',
-    center=(0, 0, 0),
-    sync=sls2,
-    B0=2.1,)
-    
-sls2_35t = bendingMagnet(
-    name='FE-BM-SLS2-3.5T',
-    center=(0, 0, 0),
-    sync=sls2,
-    B0=3.5,)
-    
-sls2_50t = bendingMagnet(
-    name='FE-BM-SLS2-5.0T',
-    center=(0, 0, 0),
-    sync=sls2,
-    B0=5.0,)
-    
-# FE slits
-fe_slits = namedtuple('slits', ['name', 'center', 'center1', 'center2', 'maxDivH', 'maxDivV'])
-
-feSlits = fe_slits(
-    name='FE-SLITS',
-    center=(0, 6117, sourceHeight),
-    center1=(0, 5045, sourceHeight),
-    center2=(0, 5289.5, sourceHeight),
-    maxDivH=1.8e-3,
-    maxDivV=0.8e-3,)
-    
-# FE Window
-filt = namedtuple('filt', ['name', 'center', 'pitch', 'limPhysX', 'limPhysY', 'surface', 'material', 'thickness'])
-
-feWindow = filt(
-    name='FE-WINDOW',
-    center=(0., 7020, sourceHeight),
-    pitch=np.pi/2,
-    limPhysX=(-6, 6),
-    limPhysY=(-3., 3.),
-    surface='None',
-    material=filterDiamond,
-    thickness=0.1,) 
-feWindow = feWindow._replace(surface=f'CVD Diamond window {feWindow.thickness*1e3:0.0f} $\\mu$m')   
-
-# Collimating mirror 
-collimatingMirror = namedtuple('collimatingMirror', ['name',
-    'center', 'surface', 'material', 'limPhysX', 'limPhysY',
-    'limOptX', 'limOptY', 'R', 'pitch', 'jack1', 'jack2', 'jack3',
-    'tx1', 'tx2'])    
-    
-cm = collimatingMirror(
-    name='FE-CM',
-    center=[0, 6890, sourceHeight],
-    surface=('Si','Pt','Rh'),
-    material=(stripeSi, stripePt, stripeRh),
-    limPhysX=(-34, 34),
-    limPhysY=(-600, 600),
-    limOptX=((-21, -7, 14), (-11, 11, 23)),
-    limOptY=((-500, -500, -500), (500, 500, 500)),
-    R=[3e6, 15e6],
-    pitch=[-5.0e-3, -0.0e-3],
-    jack1=[0., 7210., 0.], #Tripod X, Y, Z (global)
-    jack2=[-210., 8310., 0.],
-    jack3=[210., 8310., 0.],
-    tx1=[0.0, -575.5], # X-Stage 1 [x, y] (local)
-    tx2=[0.0, 575],) # X-Stage 2  
-    
-apertures = namedtuple('apertures', ['name', 'center', 'opening'])
-
-fePS = apertures(
-    name='FE-PS',
-    center=[0, 8815, sourceHeight],
-    opening=[-20., 20., -20.+12.5, 20.+12.5]) # left, right, bottom, top
-    
-opWbBsBlock = apertures(
-    name='OP-WB-BS-BLOCK',
-    center=[0., 13860, sourceHeight],
-    opening=[-18., 18., 25, 85.5]) # left, right, bottom, top
-    # opening=[-18., 18., 42, 76], # X10DA
-
-# Monochromator
-monochromator = namedtuple('monochromator', ['name', 'center',
-    'xtal', 'material1', 'material2', 'xtalWidth', 'xtalOffsetX',
-    'xtalLength1', 'xtalLength2', 'xtalGap', 'rotOffset',
-    'heightOffset', 'braggLim', 'jack1', 'jack2', 'jack3', 'tx'])  
-
-mo1 = monochromator(
-    name='OP-MO1',
-    center=[0., 11750, sourceHeight],
-    xtal=('Si311','Si111'),
-    material1=(si311_1, si111_1),
-    material2=(si311_2, si111_2),
-    xtalWidth = (24, 24),
-    xtalOffsetX=(-21.2, 21.2),
-    xtalLength1 = (55, 55),
-    xtalLength2 = (105, 105),
-    xtalGap = (8, 8),
-    rotOffset = 6,
-    heightOffset = 8.5,
-    braggLim = [3.6, 33],
-    jack1=[0., 11350., 0.], #Tripod maybe not available!
-    jack2=[-400., 12350., 0.],
-    jack3=[400., 12350., 0.],
-    tx=0.0,) # X-Stage [x]
-    
-mo2 = monochromator(
-    name='OP-CCM2',
-    center=[0., 13250, sourceHeight],
-    xtal=('Si311','Si111'),
-    material1=(si311_1, si111_1),
-    material2=(si311_2, si111_2),
-    xtalWidth = (24, 24),
-    xtalOffsetX=(-21, 21),
-    xtalLength1 = (55, 55),
-    xtalLength2 = (105, 105),
-    xtalGap = (8, 8),
-    rotOffset = 6,
-    heightOffset = 8.5,
-    braggLim = [3.6, 33],
-    jack1=[0., 13350., 0.], #Tripod maybe not available!
-    jack2=[-400., 14350., 0.],
-    jack3=[400., 14350., 0.],
-    tx=0.0,) # X-Stage [x]
-
-# OP Slits
-op_slits = namedtuple('op_slits', ['name', 'center'])
-
-opSlits1 = op_slits(
-    name='OP-SLITS 1',
-    center=(0, 14349.6, sourceHeight),
-)
-
-opSlits2 = op_slits(
-    name='OP-SLITS 2',
-    center=(0, 18134.8, sourceHeight),
-)
-
-# OP Beam Monitors
-op_bm = namedtuple('op_bm', ['name', 'center'])
-
-opBM1 = op_bm(
-    name='OP Beam Monitor 1',
-    center=(0, 14599.6, sourceHeight),
-)
-
-opBM2 = op_bm(
-    name='OP Beam Monitor 2',
-    center=(0, 18384.8, sourceHeight),
-)
-    
-# Focusing mirror 
-focusingMirror = namedtuple('focusingMirror', ['name', 'center',
-    'surfaceToroid', 'materialToroid', 'surfaceFlat', 'materialFlat',
-    'limPhysXToroid', 'limPhysYToroid', 'limPhysXFlat', 'limPhysYFlat',
-    'limOptXToroid', 'limOptYToroid', 'limOptXFlat', 'limOptYFlat',
-    'R', 'pitch', 'r', 'xToroid', 'xFlat', 'hToroid', 'jack1', 'jack2', 'jack3',
-    'tx1', 'tx2'])   
-    
-fm = focusingMirror(
-    name='OP-FM',
-    center=[0., 15670, sourceHeight], # nominal height 58 mm above ring, SLS1!
-    surfaceToroid=('Rh', 'Pt'),
-    materialToroid=(stripeRh, stripePt),
-    surfaceFlat=('Rh', 'Pt'),
-    materialFlat=(stripeRh, stripePt),
-    limPhysXToroid=(-79., 79.),
-    limPhysYToroid=(-575., 575.),
-    limPhysXFlat=(-79., 79.),
-    limPhysYFlat=(-575., 575.),
-    limOptXToroid=((-38, 66), (-66, 31)),
-    limOptYToroid=((-500., -500.), (500., 500.)),
-    limOptXFlat=((-11.45, 23.55), (-30.45, -6.45)),
-    limOptYFlat=((-500., -500.), (500., 500.)),
-    R=[3e6, 15e6],
-    pitch=[-5.0e-3, 0e-3],
-    r=[35.510, 24.986],
-    xToroid=[-52, 48.5], # offset in local x
-    xFlat = [-20.95, 8.55],
-    hToroid=[2.88, 7.15], # depth of the cylinder at x = xCylinder1 and x = xCylinder2.
-    jack1=[-130., 15535-538., 0.],
-    jack2=[130., 15535+538., 0.],
-    jack3=[0., 15535+538., 0.],
-    tx1=[0., -575.], # X-Stage 1 [x, y]
-    tx2=[0., 575.],) # X-Stage 2 [x, y]
-
-# EH Window
-ehWindow = filt(
-    name='EH-WINDOW',
-    center=(0., 19998.3, sourceHeight),
-    pitch=np.pi/2,
-    limPhysX=(-20., 20.),
-    limPhysY=(-4, 4),
-    surface='None',
-    material=filterSi3N4,
-    thickness=0.002,)
-ehWindow = ehWindow._replace(surface=f'Beryllium window {ehWindow.thickness*1e3:0.0f} $\\mu$m')  
-    
-# Sample
-sample = namedtuple('sample', ['name', 'center'])
-
-smpl = sample(
-    name='EH-SMPL',
-    center=[0, 23365, sourceHeight],)
-
-smpl2 = sample(
-    name='EH-SMPL2',
-    center=[0, 27500, sourceHeight],)
-
-# Vacuum pipes
-# DN40CF ID = 35 mm oder 37 mm
-# DN50CF ID = 47.5 mm
-# DN63CF ID = 60.2 mm oder 66 mm
-# DN100CF ID = 97.4 mm oder 104 mm
-pipe = namedtuple('pipes', ['center', 'diameter', 'start', 'end'])
-vacuum_pipes = pipe(
-    center=  [27.5,            (37.5+27.5)/2,                37.5,              62.5,                 72.5],
-    diameter=[97.4,                     97.4,                97.4,              97.4,                 97.4],
-    start=   [10952.88,            11750+250,   mo2.center[1]+250,             14000,         fm.center[1]],
-    end=     [11750-250,   mo2.center[1]-250,               14000,      fm.center[1],   ehWindow.center[1]],
-)
-
-Walls = namedtuple('walls', ['start', 'end', 'height'])
-walls = Walls(
-    start=  [13999.30],
-    end=    [13999+75.5+30],
-    height= [[-20, 25]],
-)

debye_bec/deployments/device_server/startup.py

@@ -1,11 +0,0 @@
-import os
-
-
-def setup_epics_ca():
-    # os.environ["EPICS_CA_AUTO_ADDR_LIST"] = "NO"
-    # os.environ["EPICS_CA_ADDR_LIST"] = "129.129.122.255 sls-x12sa-cagw.psi.ch:5836"
-    os.environ["PYTHONIOENCODING"] = "latin1"
-
-
-def run():
-    setup_epics_ca()

debye_bec/device_configs/x01da_beam_monitors.yaml

@@ -1,34 +0,0 @@
-
-###################################
-##         Beam Monitors         ##
-###################################
-
-beam_monitor_1:
-  readoutPriority: async
-  description: Beam monitor 1
-  deviceClass: debye_bec.devices.cameras.prosilica_cam.ProsilicaCam
-  deviceConfig:
-    prefix: "X01DA-OP-GIGE01:"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-beam_monitor_2:
-  readoutPriority: async
-  description: Beam monitor 2
-  deviceClass: debye_bec.devices.cameras.prosilica_cam.ProsilicaCam
-  deviceConfig:
-    prefix: "X01DA-OP-GIGE02:"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-xray_eye:
- readoutPriority: async
- description: X-ray eye
- deviceClass: debye_bec.devices.cameras.basler_cam.BaslerCam
- deviceConfig:
-   prefix: "X01DA-ES-XRAYEYE:"
- onFailure: retry
- enabled: true
- softwareTrigger: false

debye_bec/device_configs/x01da_experimental_hutch.yaml

@@ -1,449 +0,0 @@
-###################################
-##         Optical Table         ##
-###################################
-
-ot_tryu:
-  readoutPriority: baseline
-  description: Optical Table Y-Translation Upstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES-OT:TRYU
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-ot_tryd:
-  readoutPriority: baseline
-  description: Optical Table Y-Translation Downstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES-OT:TRYD
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-ot_es1_trz:
-  readoutPriority: baseline
-  description: Optical Table ES1 Z-Translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-OT:TRZ
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-ot_es2_trz:
-  readoutPriority: baseline
-  description: Optical Table ES2 Z-Translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES2-OT:TRZ
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-ot_try:
-  readoutPriority: baseline
-  description: Optical Table Y-Translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES-OT:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-ot_rotx:
-  readoutPriority: baseline
-  description: Optical Table Pitch
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES-OT:ROTX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##          Exit Window          ##
-###################################
-
-es0wi_try:
-  readoutPriority: baseline
-  description: End Station 0 Exit Window Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-WI:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##          ES0 Filter           ##
-###################################
-
-es0filter:
-  readoutPriority: baseline
-  description: ES0 filter station
-  deviceClass: debye_bec.devices.es0filter.ES0Filter
-  deviceConfig:
-    prefix: "X01DA-ES0-FI:"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##          Slits ES0            ##
-###################################
-
-es0sl_trxr:
-  readoutPriority: baseline
-  description: End Station slits X-translation Ring-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:TRXR
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es0sl_trxw:
-  readoutPriority: baseline
-  description: End Station slits X-translation Wall-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:TRXW
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es0sl_tryb:
-  readoutPriority: baseline
-  description: End Station slits Y-translation Bottom-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:TRYB
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es0sl_tryt:
-  readoutPriority: baseline
-  description: End Station slits X-translation Top-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:TRYT
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es0sl_center:
-  readoutPriority: baseline
-  description: End Station slits X-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:CENTERX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es0sl_gapx:
-  readoutPriority: baseline
-  description: End Station slits X-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:GAPX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es0sl_centery:
-  readoutPriority: baseline
-  description: End Station slits Y-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:CENTERY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es0sl_gapy:
-  readoutPriority: baseline
-  description: End Station slits Y-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES0-SL:GAPY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##        Alignment Laser        ##
-###################################
-
-es1_alignment_laser:
-  readoutPriority: baseline
-  description: ES1 alignment laser
-  deviceClass: ophyd.EpicsSignal
-  deviceConfig:
-    read_pv: "X01DA-ES1-LAS:Relay"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##       Sample Manipulator      ##
-###################################
-
-es1man_trx:
-  readoutPriority: baseline
-  description: End Station sample manipulator X-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-MAN1:TRX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es1man_try:
-  readoutPriority: baseline
-  description: End Station sample manipulator Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-MAN1:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es1man_trz:
-  readoutPriority: baseline
-  description: End Station sample manipulator Z-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-MAN1:TRZ
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es1man_roty:
-  readoutPriority: baseline
-  description: End Station sample manipulator Y-rotation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-MAN1:ROTY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##         Segmented Arc         ##
-###################################
-
-es1arc_roty:
-  readoutPriority: baseline
-  description: End Station segmented arc Y-rotation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-ARC:ROTY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es1det1_trx:
-  readoutPriority: baseline
-  description: End Station SDD 1 X-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-DET1:TRX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es1bm1_trx:
-  readoutPriority: baseline
-  description: End Station X-ray Eye X-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-BM1:TRX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es1det2_trx:
-  readoutPriority: baseline
-  description: End Station SDD 2 X-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-DET2:TRX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##     IC1 + IC2 Manipulator     ##
-###################################
-
-es2ma2_try:
-  readoutPriority: baseline
-  description: End Station ionization chamber 1+2 Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES2-MA2:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es2ma2_trz:
-  readoutPriority: baseline
-  description: End Station ionization chamber 1+2 Z-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES2-MA2:TRZ
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##   XRD Detector Manipulator    ##
-###################################
-
-es2ma3_try:
-  readoutPriority: baseline
-  description: End Station XRD detector Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES2-MA3:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##  Hutch Env. Sensors + Light   ##
-###################################
-
-es_temperature1:
-  readoutPriority: baseline
-  description: ES temperature sensor 1
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-PC-I2C:_CH1:TEMP"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_humidity1:
-  readoutPriority: baseline
-  description: ES humidity sensor 1
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-PC-I2C:_CH1:HUMIREL"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_pressure1:
-  readoutPriority: baseline
-  description: ES ambient pressure sensor 1
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-PC-I2C:_CH1:PRES"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_temperature2:
-  readoutPriority: baseline
-  description: ES temperature sensor 2
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-PC-I2C:_CH2:TEMP"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_humidity2:
-  readoutPriority: baseline
-  description: ES humidity sensor 2
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-PC-I2C:_CH2:HUMIREL"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_pressure2:
-  readoutPriority: baseline
-  description: ES ambient pressure sensor 2
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-PC-I2C:_CH2:PRES"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_light_toggle:
-  readoutPriority: baseline
-  description: ES light toggle
-  deviceClass: ophyd.EpicsSignal
-  deviceConfig:
-    read_pv: "X01DA-EH-LIGHT:TOGGLE"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_gas_sensor_o2:
-  readoutPriority: baseline
-  description: ES Gas Sensor O2
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-KIMESSA2:EH-O2"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_gas_sensor_h2s:
-  readoutPriority: baseline
-  description: ES Gas Sensor H2S
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-KIMESSA2:EH-H2S"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_gas_sensor_no2:
-  readoutPriority: baseline
-  description: ES Gas Sensor NO2
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-KIMESSA2:EH-NO2"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_gas_sensor_co:
-  readoutPriority: baseline
-  description: ES Gas Sensor CO
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-KIMESSA2:EH-CO"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_gas_sensor_h2:
-  readoutPriority: baseline
-  description: ES Gas Sensor H2
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-KIMESSA2:EH-H2"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es_gas_sensor_nh3:
-  readoutPriority: baseline
-  description: ES Gas Sensor NH3
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-KIMESSA2:EH-NH3"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false

debye_bec/device_configs/x01da_frontend.yaml

@@ -1,243 +0,0 @@
-
-###################################
-##       Frontend Absorber       ##
-###################################
-
-abs:
-  readoutPriority: baseline
-  description: Frontend Absorber
-  deviceClass: debye_bec.devices.absorber.Absorber
-  deviceConfig:
-    prefix: "X01DA-FE-ABS1:"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##        Frontend Slits         ##
-###################################
-
-sldi_trxr:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm X-translation Ring-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:TRXR
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sldi_trxw:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm X-translation Wall-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:TRXW
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sldi_tryb:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm Y-translation Bottom-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:TRYB
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sldi_tryt:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm X-translation Top-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:TRYT
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sldi_centerx:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm X-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:CENTERX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sldi_gapx:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm X-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:GAPX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sldi_centery:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm Y-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:CENTERY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sldi_gapy:
-  readoutPriority: baseline
-  description: Front-end slit diaphragm Y-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-SLDI:GAPY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##       Collimating Mirror      ##
-###################################
-
-cm_trxu:
-  readoutPriority: baseline
-  description: Collimating Mirror X-translation upstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:TRXU
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_trxd:
-  readoutPriority: baseline
-  description: Collimating Mirror X-translation downstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:TRXD
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_tryu:
-  readoutPriority: baseline
-  description: Collimating Mirror Y-translation upstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:TRYU
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_trydr:
-  readoutPriority: baseline
-  description: Collimating Mirror Y-translation downstream ring
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:TRYDR
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_trydw:
-  readoutPriority: baseline
-  description: Collimating Mirror Y-translation downstream wall
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:TRYDW
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_bnd:
-  readoutPriority: baseline
-  description: Collimating Mirror bender
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:BND
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_bnd_radius:
-  readoutPriority: baseline
-  description: Collimating Mirror Bending Radius
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: X01DA-CPCL-CM:BNDFORCE
-  onFailure: retry
-  readOnly: true
-  enabled: true
-  softwareTrigger: false
-
-cm_rotx:
-  readoutPriority: baseline
-  description: Collimating Morror Pitch
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:ROTX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_roty:
-  readoutPriority: baseline
-  description: Collimating Morror Yaw
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:ROTY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_rotz:
-  readoutPriority: baseline
-  description: Collimating Morror Roll
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:ROTZ
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_trx:
-  readoutPriority: baseline
-  description: Collimating Morror Center Point X
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:XTCP
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_try:
-  readoutPriority: baseline
-  description: Collimating Morror Center Point Y
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:YTCP
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_ztcp:
-  readoutPriority: baseline
-  description: Collimating Morror Center Point Z
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:ZTCP
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-cm_xstripe:
-  readoutPriority: baseline
-  description: Collimating Morror X Stripe
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-FE-CM:XSTRIPE
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false

debye_bec/device_configs/x01da_hutch_cameras.yaml

@@ -1,34 +0,0 @@
-
-###################################
-##         Hutch Cameras         ##
-###################################
-
-hutch_cam_1:
-  readoutPriority: baseline
-  description: Hutch Camera 1
-  deviceClass: debye_bec.devices.cameras.hutch_cam.HutchCam
-  deviceConfig:
-    prefix: "pcp085420"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-hutch_cam_2:
-  readoutPriority: baseline
-  description: Hutch Camera 2
-  deviceClass: debye_bec.devices.cameras.hutch_cam.HutchCam
-  deviceConfig:
-    prefix: "pcp085436"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-hutch_cam_3:
-  readoutPriority: baseline
-  description: Hutch Camera 3
-  deviceClass: debye_bec.devices.cameras.hutch_cam.HutchCam
-  deviceConfig:
-    prefix: "pcp085435"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false

debye_bec/device_configs/x01da_machine.yaml

@@ -1,18 +0,0 @@
-
-###################################
-##          SLS Machine          ##
-###################################
-
-curr:
-  readoutPriority: baseline
-  description: SLS ring current
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    auto_monitor: true
-    read_pv: AGEBD-DBPM3CURR:CURRENT-AVG
-  deviceTags:
-    - machine
-  onFailure: buffer
-  enabled: true
-  readOnly: true
-  softwareTrigger: false

debye_bec/device_configs/x01da_optics.yaml

@@ -1,411 +0,0 @@
-
-###################################
-##         Monochromator         ##
-###################################
-
-mo1_try:
-  readoutPriority: baseline
-  description: Monochromator Y Translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-MO1:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-mo1_trx:
-  readoutPriority: baseline
-  description: Monochromator X Translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-MO1:TRX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-mo1_roty:
-  readoutPriority: baseline
-  description: Monochromator Yaw
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-MO1:ROTY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-## Optics Slits + Beam Monitor 1 ##
-###################################
-
-sl1_trxr:
-  readoutPriority: baseline
-  description: Optics slits 1 X-translation Ring-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:TRXR
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl1_trxw:
-  readoutPriority: baseline
-  description: Optics slits 1 X-translation Wall-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:TRXW
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl1_tryb:
-  readoutPriority: baseline
-  description: Optics slits 1 Y-translation Bottom-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:TRYB
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl1_tryt:
-  readoutPriority: baseline
-  description: Optics slits 1 X-translation Top-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:TRYT
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-bm1_try:
-  readoutPriority: baseline
-  description: Beam Monitor 1 Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-BM1:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl1_centerx:
-  readoutPriority: baseline
-  description: Optics slits 1 X-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:CENTERX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl1_gapx:
-  readoutPriority: baseline
-  description: Optics slits 1 X-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:GAPX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl1_centery:
-  readoutPriority: baseline
-  description: Optics slits 1 Y-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:CENTERY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl1_gapy:
-  readoutPriority: baseline
-  description: Optics slits 1 Y-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL1:GAPY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-###################################
-##        Focusing Mirror        ##
-###################################
-
-fm_trxu:
-  readoutPriority: baseline
-  description: Focusing Mirror X-translation upstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:TRXU
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_trxd:
-  readoutPriority: baseline
-  description: Focusing Mirror X-translation downstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:TRXD
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_tryd:
-  readoutPriority: baseline
-  description: Focusing Mirror Y-translation downstream
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:TRYD
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_tryur:
-  readoutPriority: baseline
-  description: Focusing Mirror Y-translation upstream ring
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:TRYUR
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_tryuw:
-  readoutPriority: baseline
-  description: Focusing Mirror Y-translation upstream wall
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:TRYUW
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_bnd:
-  readoutPriority: baseline
-  description: Focusing Mirror bender
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:BND
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_bnd_radius:
-  readoutPriority: baseline
-  description: Focusing Mirror Bending Radius
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: X01DA-CPCL-FM:BNDFORCE
-  onFailure: retry
-  readOnly: true
-  enabled: true
-  softwareTrigger: false
-
-fm_rotx:
-  readoutPriority: baseline
-  description: Focusing Morror Pitch
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:ROTX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_roty:
-  readoutPriority: baseline
-  description: Focusing Morror Yaw
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:ROTY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_rotz:
-  readoutPriority: baseline
-  description: Focusing Morror Roll
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:ROTZ
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_trx:
-  readoutPriority: baseline
-  description: Focusing Morror Center Point X
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:XTCP
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_try:
-  readoutPriority: baseline
-  description: Focusing Morror Center Point Y
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:YTCP
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-fm_ztcp:
-  readoutPriority: baseline
-  description: Focusing Morror Center Point Z
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-FM:ZTCP
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-## Optics Slits + Beam Monitor 2 ##
-###################################
-
-sl2_trxr:
-  readoutPriority: baseline
-  description: Optics slits 2 X-translation Ring-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:TRXR
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl2_trxw:
-  readoutPriority: baseline
-  description: Optics slits 2 X-translation Wall-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:TRXW
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl2_tryb:
-  readoutPriority: baseline
-  description: Optics slits 2 Y-translation Bottom-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:TRYB
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl2_tryt:
-  readoutPriority: baseline
-  description: Optics slits 2 X-translation Top-edge
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:TRYT
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-bm2_try:
-  readoutPriority: baseline
-  description: Beam Monitor 2 Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-BM2:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl2_centerx:
-  readoutPriority: baseline
-  description: Optics slits 2 X-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:CENTERX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl2_gapx:
-  readoutPriority: baseline
-  description: Optics slits 2 X-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:GAPX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl2_centery:
-  readoutPriority: baseline
-  description: Optics slits 2 Y-center
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:CENTERY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits
-
-sl2_gapy:
-  readoutPriority: baseline
-  description: Optics slits 2 Y-gap
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-OP-SL2:GAPY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  deviceTags:
-    - optics
-    - slits

debye_bec/device_configs/x01da_standard_config.yaml

@@ -1,80 +0,0 @@
-
-###################################
-##           General             ##
-###################################
-
-## SLS Machine
-machine_config:
-  - !include ./x01da_machine.yaml
-
-## Beam Monitors OP + EH
-beam_monitors_config:
-  - !include ./x01da_beam_monitors.yaml
-
-###################################
-##           Frontend            ##
-###################################
-
-## Frontend
-frontend_config:
-  - !include ./x01da_frontend.yaml
-
-###################################
-##         Optics Hutch          ##
-###################################
-
-## Bragg Monochromator
-mo1_bragg:
-  readoutPriority: baseline
-  description: Positioner for the Monochromator
-  deviceClass: debye_bec.devices.mo1_bragg.mo1_bragg.Mo1Bragg
-  deviceConfig:
-    prefix: "X01DA-OP-MO1:BRAGG:"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-mo1_bragg_angle:
- readoutPriority: baseline
- description: Positioner for the Monochromator
- deviceClass: debye_bec.devices.mo1_bragg.mo1_bragg_angle.Mo1BraggAngle
- deviceConfig:
-   prefix: "X01DA-OP-MO1:BRAGG:"
- onFailure: retry
- enabled: true
- softwareTrigger: false
-
-## Remaining optics hutch
-optics_config:
-  - !include ./x01da_optics.yaml
-
-###################################
-##      Experimental Hutch       ##
-###################################
-
-# ## NIDAQ
-nidaq:
-  readoutPriority: monitored
-  description: NIDAQ backend for data reading for debye scans
-  deviceClass: debye_bec.devices.nidaq.nidaq.Nidaq
-  deviceConfig:
-    prefix: "X01DA-PC-SCANSERVER:"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-## XAS (ICx, SDD, ref foils)
-xas_config:
-  - !include ./x01da_xas.yaml
-
-## XRD (Pilatus, pinhole, beamstop)
-#xrd_config:
-#  - !include ./x01da_xrd.yaml
-
-# Commented out because too slow
-## Hutch cameras
-# hutch_cams:
-#   - !include ./x01da_hutch_cameras.yaml
-
-## Remaining experimental hutch
-es_config:
-  - !include ./x01da_experimental_hutch.yaml

debye_bec/device_configs/x01da_xas.yaml

@@ -1,83 +0,0 @@
-
-###################################
-##     Ionization Chambers       ##
-###################################
-
-ic0:
-  readoutPriority: baseline
-  description: Ionization chamber 0
-  deviceClass: debye_bec.devices.ionization_chambers.ionization_chamber.IonizationChamber0
-  deviceConfig:
-    prefix: "X01DA-"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-ic1:
-  readoutPriority: baseline
-  description: Ionization chamber 1
-  deviceClass: debye_bec.devices.ionization_chambers.ionization_chamber.IonizationChamber1
-  deviceConfig:
-    prefix: "X01DA-"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-ic2:
-  readoutPriority: baseline
-  description: Ionization chamber 2
-  deviceClass: debye_bec.devices.ionization_chambers.ionization_chamber.IonizationChamber2
-  deviceConfig:
-    prefix: "X01DA-"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-pips:
-  readoutPriority: baseline
-  description: Pips diode
-  deviceClass: debye_bec.devices.ionization_chambers.ionization_chamber.Pips
-  deviceConfig:
-    prefix: "X01DA-"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##    Reference Foil Changer     ##
-###################################
-
-reffoilchanger:
-  readoutPriority: baseline
-  description: ES2 reference foil changer
-  deviceClass: debye_bec.devices.reffoilchanger.Reffoilchanger
-  deviceConfig:
-    prefix: "X01DA-"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##          SDD Sensors          ##
-###################################
-
-sdd1_temperature:
-  readoutPriority: baseline
-  description: SDD1 temperature sensor
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-ES1-DET1:Temperature"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-sdd1_humidity:
-  readoutPriority: baseline
-  description: SDD1 humidity sensor
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-ES1-DET1:Humidity"
-    kind: "config"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false

debye_bec/device_configs/x01da_xrd.yaml

@@ -1,108 +0,0 @@
-
-###################################
-##           Pinhole             ##
-###################################
-
-pin1_trx:
-  readoutPriority: baseline
-  description: Pinhole X-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-PIN1:TRX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  tags: Endstation
-
-pin1_try:
-  readoutPriority: baseline
-  description: Pinhole Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-PIN1:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  tags: Endstation
-
-pin1_rotx:
-  readoutPriority: baseline
-  description: Pinhole X-rotation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-PIN1:ROTX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  tags: Endstation
-
-pin1_roty:
-  readoutPriority: baseline
-  description: Pinhole Y-rotation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES1-PIN1:ROTY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-  tags: Endstation
-
-###################################
-##          Beam Stop            ##
-###################################
-
-es2bs_trx:
-  readoutPriority: baseline
-  description: End Station beamstop X-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES2-BS:TRX
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-es2bs_try:
-  readoutPriority: baseline
-  description: End Station beamstop Y-translation
-  deviceClass: ophyd_devices.EpicsMotorEC
-  deviceConfig:
-    prefix: X01DA-ES2-BS:TRY
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-###################################
-##           Pilatus             ##
-###################################
-
-pilatus_curtain:
-  readoutPriority: baseline
-  description: Pilatus Curtain
-  deviceClass: debye_bec.devices.pilatus_curtain.PilatusCurtain
-  deviceConfig:
-    prefix: "X01DA-ES2-DET3:TRY-"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false
-
-pilatus:
-  readoutPriority: baseline
-  description: Pilatus
-  deviceClass: debye_bec.devices.pilatus.pilatus.Pilatus
-  deviceTags:
-    - detector
-  deviceConfig:
-    prefix: "X01DA-ES2-PIL:"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: true
-
-pilatus_smpl:
-  readoutPriority: baseline
-  description: Sample to pilatus distance
-  deviceClass: ophyd.EpicsSignalRO
-  deviceConfig:
-    read_pv: "X01DA-ES2-DET:SMPLDIST"
-  onFailure: retry
-  enabled: true
-  softwareTrigger: false

debye_bec/devices/absorber.py

@@ -1,72 +0,0 @@
-"""Frontend Absorber"""
-
-from __future__ import annotations
-
-import enum
-from typing import TYPE_CHECKING
-
-from ophyd import Component as Cpt
-from ophyd import EpicsSignal, EpicsSignalRO
-from ophyd_devices import CompareStatus, DeviceStatus
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-
-if TYPE_CHECKING:
-    from bec_lib.devicemanager import ScanInfo
-
-class AbsorberError(Exception):
-    """Absorber specific exception"""
-
-class STATUS(int, enum.Enum):
-    """Absorber States"""
-
-    MOVING_CLOSE = 0
-    OPEN = 1
-    MOVING_OPEN = 2
-    CLOSED = 3
-    NOT_ENABLED = 4
-    TIMEOUT_CLOSE = 5
-    TIMEOUT_OPEN = 6
-    CLOSE_LS_LOST = 7
-    OPEN_LS_LOST = 8
-    CLOSE_LS_NOT_FREE = 9
-    OPEN_LS_NOT_FREE = 10
-    ERROR_LS = 11
-    TO_CONNECT = 12
-    MAN_OPEN = 13
-    UNDEFINED = 14
-
-class Absorber(PSIDeviceBase):
-    """Class for the Frontend Absorber"""
-
-    USER_ACCESS = ["open", "close"]
-
-    request = Cpt(EpicsSignal, suffix="REQUEST", kind="config", doc="Open/Close Absorber")
-    status = Cpt(EpicsSignalRO, suffix="STATUS", kind="normal", doc="Absorber Status")
-    status_string = Cpt(EpicsSignalRO, suffix="STATUS", kind="normal", string=True, doc="Absorber Status")
-
-    def __init__(self, *, name: str, prefix: str = "", scan_info: ScanInfo | None = None, **kwargs):
-        super().__init__(name=name, prefix=prefix, scan_info=scan_info, **kwargs)
-
-        self.timeout_for_move = 10
-        # Wait for connection on all components, ensure IOC is connected
-        self.wait_for_connection(all_signals=True, timeout=5)
-
-    def open(self) -> DeviceStatus | None:
-        """Open the Absorber"""
-        if self.status.get() == STATUS.CLOSED:
-            self.request.put(1)
-            status_open = CompareStatus(self.status, STATUS.OPEN, timeout=self.timeout_for_move)
-            status = status_open
-            return status
-        else:
-            return None
-
-    def close(self) -> DeviceStatus | None:
-        """Close the Absorber"""
-        if self.status.get() == STATUS.OPEN:
-            self.request.put(1)
-            status_close = CompareStatus(self.status, STATUS.CLOSED, timeout=self.timeout_for_move)
-            status = status_close
-            return status
-        else:
-            return None

debye_bec/devices/cameras/basler_cam.py

@@ -1,46 +0,0 @@
-"""Basler camera class for Debye BEC."""
-
-from __future__ import annotations
-
-from typing import TYPE_CHECKING
-
-from ophyd import ADBase, EpicsSignalRO
-from ophyd import ADComponent as ADCpt
-from ophyd import Component as Cpt
-from ophyd_devices import PreviewSignal
-from ophyd_devices.devices.areadetector.cam import AravisDetectorCam
-from ophyd_devices.devices.areadetector.plugins import ImagePlugin_V35
-
-from debye_bec.devices.cameras.debye_base_cam import DebyeBaseCamera
-
-if TYPE_CHECKING:  # pragma: no cover
-    from bec_lib.devicemanager import ScanInfo
-
-
-class BaslerCamBase(ADBase):
-    """BaslerCam Base class."""
-
-    cam_detector_state_string = Cpt(EpicsSignalRO, suffix="cam1:DetectorState_RBV", string=True)
-
-    _default_configuration_attrs = [
-        'cam1.acquire_time',
-        'cam1.detector_state',
-        'cam_detector_state_string',
-        'cam1.gain',
-        'cam1.model',
-    ]
-
-    cam1 = ADCpt(AravisDetectorCam, "cam1:")
-    image1 = ADCpt(ImagePlugin_V35, "image1:")
-
-
-class BaslerCam(DebyeBaseCamera, BaslerCamBase):
-    """Basler camera class at Debye. IOC prefix: X01DA-ES-XRAYEYE:"""
-
-    preview = Cpt(
-        PreviewSignal,
-        name="preview",
-        ndim=2,
-        num_rotation_90=3,
-        doc="Preview signal for the camera.",
-    )

debye_bec/devices/cameras/debye_base_cam.py

@@ -1,138 +0,0 @@
-"""Base class for Camera integration at Debye."""
-
-from __future__ import annotations
-
-import threading
-from typing import TYPE_CHECKING
-
-import numpy as np
-from bec_lib.logger import bec_logger
-from ophyd import Component as Cpt
-from ophyd import DeviceStatus, StatusBase
-from ophyd_devices import PreviewSignal
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from typeguard import typechecked
-
-if TYPE_CHECKING:  # pragma: no cover
-    from bec_lib.devicemanager import ScanInfo
-    from ophyd_devices.devices.areadetector.plugins import ImagePlugin_V35
-
-
-logger = bec_logger.logger
-
-
-class DebyeBaseCamera(PSIDeviceBase):
-    """Base class for Debye cameras."""
-
-    USER_ACCESS = ["live_mode"]
-    preview = Cpt(
-        PreviewSignal,
-        name="preview",
-        ndim=2,
-        num_rotation_90=-1,
-        doc="Preview signal for the camera.",
-    )
-
-    def __init__(self, *, name: str, prefix: str = "", scan_info: ScanInfo | None = None, **kwargs):
-        super().__init__(name=name, prefix=prefix, scan_info=scan_info, **kwargs)
-        self.image1: "ImagePlugin_V35"
-        self._update_frequency = 1  # Hz
-        self._live_mode = False
-        self._live_mode_event = None
-        self._task_status = None
-
-    @property
-    def live_mode(self) -> bool:
-        """Live mode status."""
-        return self._live_mode
-
-    @typechecked
-    @live_mode.setter
-    def live_mode(self, value: bool) -> None:
-        """
-        Set the live mode status.
-
-        Args:
-            value (bool): True to enable live mode, False to disable.
-        """
-        if value == self._live_mode:
-            return
-        self._live_mode = value
-        if value:
-            self._start_live_mode()
-        else:
-            self._stop_live_mode()
-
-    def _start_live_mode(self) -> None:
-        """Start live mode."""
-        if self._live_mode_event is not None:  # Kill task if it exists
-            self._live_mode_event.set()
-            self._live_mode_event = None
-            if self._task_status is not None:
-                self.task_handler.kill_task(task_status=self._task_status)
-                self._task_status = None
-
-        self._live_mode_event = threading.Event()
-        self._task_status = self.task_handler.submit_task(task=self.emit_to_bec)
-
-    def _stop_live_mode(self) -> None:
-        """Stop live mode."""
-        if self._live_mode_event is not None:
-            self._live_mode_event.set()
-            self._live_mode_event = None
-
-    def emit_to_bec(self):
-        """Emit the image data to BEC. If _live_mode_event is set, stop the task."""
-        while not self._live_mode_event.wait(1 / self._update_frequency):
-            value = self.image1.array_data.get()
-            if value is None:
-                continue
-            width = self.image1.array_size.width.get()
-            height = self.image1.array_size.height.get()
-            # Geometry correction for the image
-            data = np.reshape(value, (height, width))
-            self.preview.put(data)
-
-    ########################################
-    #  Beamline Specific Implementations   #
-    ########################################
-
-    def on_init(self) -> None:
-        """
-        Called when the device is initialized.
-
-        No signals are connected at this point. If you like to
-        set default values on signals, please use on_connected instead.
-        """
-
-    def on_connected(self) -> None:
-        """
-        Called after the device is connected and its signals are connected.
-        Default values for signals should be set here.
-        """
-        self.live_mode = True
-
-    def on_stage(self) -> DeviceStatus | StatusBase | None:
-        """
-        Called while staging the device.
-
-        Information about the upcoming scan can be accessed from the scan_info (self.scan_info.msg) object.
-        """
-
-    def on_unstage(self) -> DeviceStatus | StatusBase | None:
-        """Called while unstaging the device."""
-
-    def on_pre_scan(self) -> DeviceStatus | StatusBase | None:
-        """Called right before the scan starts on all devices automatically."""
-
-    def on_trigger(self) -> DeviceStatus | StatusBase | None:
-        """Called when the device is triggered."""
-
-    def on_complete(self) -> DeviceStatus | StatusBase | None:
-        """Called to inquire if a device has completed a scans."""
-
-    def on_kickoff(self) -> DeviceStatus | StatusBase | None:
-        """Called to kickoff a device for a fly scan. Has to be called explicitly."""
-
-    def on_stop(self) -> None:
-        """Called when the device is stopped."""

debye_bec/devices/cameras/hutch_cam.py

@@ -1,79 +0,0 @@
-"""EH Hutch Cameras"""
-
-from __future__ import annotations
-
-import cv2
-import threading
-from typing import TYPE_CHECKING
-
-from bec_lib.logger import bec_logger
-from bec_lib.file_utils import get_full_path
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from ophyd_devices import DeviceStatus
-
-if TYPE_CHECKING:  # pragma: no cover
-    from bec_lib.devicemanager import ScanInfo
-    from bec_lib.messages import ScanStatusMessage
-
-logger = bec_logger.logger
-
-CAM_USERNAME = "camera_user"
-CAM_PASSWORD = "camera_user1"
-CAM_PORT = 554
-
-class HutchCam(PSIDeviceBase):
-    """Class for the Hutch Cameras"""
-
-    # image = Cpt(Signal, name='image', kind='config')
-
-    def __init__(self, *, name: str, prefix: str = "", scan_info: ScanInfo | None = None, **kwargs):
-        super().__init__(name=name, scan_info=scan_info, **kwargs)
-
-        self.hostname = prefix
-        self.status = None
-
-    # pylint: disable=E1101
-    def on_connected(self) -> None:
-        """
-        Called after the device is connected and its signals are connected.
-        Default values for signals should be set here.
-        """
-        rtsp_url = f"rtsp://{CAM_USERNAME}:{CAM_PASSWORD}@{self.hostname}.psi.ch:{CAM_PORT}/rtpstream/config1"
-        cap = cv2.VideoCapture(f"{rtsp_url}?tcp")
-        if not cap.isOpened():
-            logger.error(self, "Connection Failed", "Could not connect to the camera stream.")
-            return
-        cap.release()
-
-    def on_stage(self) -> DeviceStatus:
-        """Called while staging the device."""
-
-        scan_msg: ScanStatusMessage = self.scan_info.msg
-        file_path = get_full_path(scan_msg, name='hutch_cam_' + self.hostname).removesuffix('h5')
-
-        self.status = DeviceStatus(self)
-
-        thread = threading.Thread(target=self._save_picture, args=(file_path, self.status), daemon=True)
-        thread.start()
-
-        return self.status
-
-    def _save_picture(self, file_path, status):
-        try:
-            logger.info(f'Capture from camera {self.hostname}')
-            rtsp_url = f"rtsp://{CAM_USERNAME}:{CAM_PASSWORD}@{self.hostname}.psi.ch:{CAM_PORT}/rtpstream/config1"
-            cap = cv2.VideoCapture(f"{rtsp_url}?tcp")
-            if not cap.isOpened():
-                logger.error("Connection Failed", "Could not connect to the camera stream.")
-                return
-            logger.info(f'Connection to camera {self.hostname} established')
-            ret, frame = cap.readAsync()
-            cap.release()
-            if not ret:
-                logger.error("Capture Failed", "Failed to capture image from camera.")
-                return
-            cv2.imwrite(file_path + 'png', frame)
-            status.set_finished()
-            logger.info(f'Capture from camera {self.hostname} done')
-        except Exception as e:
-            status.set_exception(e)

debye_bec/devices/cameras/prosilica_cam.py

@@ -1,49 +0,0 @@
-"""Prosilica camera class for integration of beam_monitor 1/2 cameras."""
-
-from __future__ import annotations
-
-from typing import TYPE_CHECKING
-
-from ophyd import ADBase, EpicsSignalRO
-from ophyd import ADComponent as ADCpt
-from ophyd import Component as Cpt
-from ophyd_devices import PreviewSignal
-from ophyd_devices.devices.areadetector.cam import ProsilicaDetectorCam
-from ophyd_devices.devices.areadetector.plugins import ImagePlugin_V35
-
-from debye_bec.devices.cameras.debye_base_cam import DebyeBaseCamera
-
-if TYPE_CHECKING:  # pragma: no cover
-    from bec_lib.devicemanager import ScanInfo
-
-
-class ProsilicaCamBase(ADBase):
-    """Base class for Prosilica cameras."""
-
-    cam_detector_state_string = Cpt(EpicsSignalRO, suffix="cam1:DetectorState_RBV", string=True)
-
-    _default_configuration_attrs = [
-        'cam1.acquire_time',
-        'cam1.detector_state',
-        'cam_detector_state_string',
-        'cam1.gain',
-        'cam1.model',
-    ]
-
-    cam1 = ADCpt(ProsilicaDetectorCam, "cam1:")
-    image1 = ADCpt(ImagePlugin_V35, "image1:")
-
-
-class ProsilicaCam(DebyeBaseCamera, ProsilicaCamBase):
-    """
-    Prosilica camera class, for integration of beam_monitor 1/2 cameras.
-    Prefixes are: X01DA-OP-GIGE02: and X01DA-OP-GIGE01:
-    """
-
-    preview = Cpt(
-        PreviewSignal,
-        name="preview",
-        ndim=2,
-        num_rotation_90=3,
-        doc="Preview signal for the camera.",
-    )

debye_bec/devices/device_list.md

@@ -1,30 +0,0 @@
-// This file was autogenerated. Do not edit it manually.
-## Device List
-### debye_bec 
-| Device | Documentation | Module |
-| :----- | :------------- | :------ |
-| BaslerCam | Basler camera class at Debye. IOC prefix: X01DA-ES-XRAYEYE: | [debye_bec.devices.cameras.basler_cam](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/cameras/basler_cam.py) |
-| BaslerCamBase | BaslerCam Base class. | [debye_bec.devices.cameras.basler_cam](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/cameras/basler_cam.py) |
-| DebyeBaseCamera | Base class for Debye cameras. | [debye_bec.devices.cameras.debye_base_cam](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/cameras/debye_base_cam.py) |
-| ES0Filter | Class for the ES0 filter station X01DA-ES0-FI: | [debye_bec.devices.es0filter](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/es0filter.py) |
-| GasMixSetup | Class for the ES2 Pilatus Curtain | [debye_bec.devices.pilatus_curtain](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/pilatus_curtain.py) |
-| GasMixSetupControl | GasMixSetup Control for Inonization Chamber 0 | [debye_bec.devices.ionization_chambers.ionization_chamber](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/ionization_chambers/ionization_chamber.py) |
-| HighVoltageSuppliesControl | HighVoltage Supplies Control for Ionization Chamber 0 | [debye_bec.devices.ionization_chambers.ionization_chamber](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/ionization_chambers/ionization_chamber.py) |
-| IonizationChamber0 | Ionization Chamber 0, prefix should be 'X01DA-'. | [debye_bec.devices.ionization_chambers.ionization_chamber](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/ionization_chambers/ionization_chamber.py) |
-| IonizationChamber1 | Ionization Chamber 1, prefix should be 'X01DA-'. | [debye_bec.devices.ionization_chambers.ionization_chamber](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/ionization_chambers/ionization_chamber.py) |
-| IonizationChamber2 | Ionization Chamber 2, prefix should be 'X01DA-'. | [debye_bec.devices.ionization_chambers.ionization_chamber](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/ionization_chambers/ionization_chamber.py) |
-| Mo1Bragg | Mo1 Bragg motor for the Debye beamline.<br><br>    The prefix to connect to the soft IOC is X01DA-OP-MO1:BRAGG:<br>     | [debye_bec.devices.mo1_bragg.mo1_bragg](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg.py) |
-| Mo1BraggAngle | Positioner implementation with readback angle of the MO1 Bragg positioner. | [debye_bec.devices.mo1_bragg.mo1_bragg_angle](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_angle.py) |
-| Mo1BraggCalculator | Mo1 Bragg PVs to convert angle to energy or vice-versa. | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Mo1BraggCrystal | Mo1 Bragg PVs to set the crystal parameters | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Mo1BraggEncoder | Mo1 Bragg PVs to communicate with the encoder | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Mo1BraggPositioner | <br>    Positioner implementation with readback energy of the MO1 Bragg positioner.<br><br>    The prefix to connect to the soft IOC is X01DA-OP-MO1:BRAGG:<br>    This soft IOC connects to the NI motor and its control loop.<br>     | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Mo1BraggScanControl | Mo1 Bragg PVs to control the scan after setting the parameters. | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Mo1BraggScanSettings | Mo1 Bragg PVs to set the scan setttings | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Mo1BraggStatus | Mo1 Bragg PVs for status monitoring | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Mo1TriggerSettings | Mo1 Trigger settings | [debye_bec.devices.mo1_bragg.mo1_bragg_devices](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/mo1_bragg/mo1_bragg_devices.py) |
-| Nidaq | NIDAQ ophyd wrapper around the NIDAQ backend currently running at x01da-cons-05<br><br>    Args:<br>        prefix (str)    : Prefix to the NIDAQ soft ioc, currently X01DA-PC-SCANSERVER:<br>        name (str)      : Name of the device<br>        scan_info (ScanInfo) : ScanInfo object passed by BEC's devicemanager.<br>     | [debye_bec.devices.nidaq.nidaq](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/nidaq/nidaq.py) |
-| NidaqControl | Nidaq control class with all PVs | [debye_bec.devices.nidaq.nidaq](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/nidaq/nidaq.py) |
-| ProsilicaCam | <br>    Prosilica camera class, for integration of beam_monitor 1/2 cameras.<br>    Prefixes are: X01DA-OP-GIGE02: and X01DA-OP-GIGE01:<br>     | [debye_bec.devices.cameras.prosilica_cam](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/cameras/prosilica_cam.py) |
-| ProsilicaCamBase | Base class for Prosilica cameras. | [debye_bec.devices.cameras.prosilica_cam](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/cameras/prosilica_cam.py) |
-| Reffoilchanger | Class for the ES2 Reference Foil Changer | [debye_bec.devices.reffoilchanger](https://gitlab.psi.ch/bec/debye_bec/-/blob/main/debye_bec/devices/reffoilchanger.py) |

debye_bec/devices/es0filter.py

@@ -1,54 +0,0 @@
-"""ES0 Filter Station"""
-
-from typing import Literal
-
-from ophyd import Component as Cpt
-from ophyd import Device, EpicsSignal, Kind
-from ophyd_devices.utils import bec_utils
-from typeguard import typechecked
-
-
-class EpicsSignalWithRBVBit(EpicsSignal):
-
-    def __init__(self, prefix, *, bit: int, **kwargs):
-        super().__init__(prefix, **kwargs)
-        self.bit = bit
-
-    @typechecked
-    def put(self, value: Literal[0, 1], **kwargs):
-        bit_value = super().get()
-        # convert to int
-        bit_value = int(bit_value)
-        if value == 1:
-            new_value = bit_value | (1 << self.bit)
-        else:
-            new_value = bit_value & ~(1 << self.bit)
-        super().put(new_value, **kwargs)
-
-    def get(self, **kwargs) -> Literal[0, 1]:
-        bit_value = super().get()
-        # convert to int
-        bit_value = int(bit_value)
-        if (bit_value & (1 << self.bit)) == 0:
-            return 0
-        return 1
-
-
-class ES0Filter(Device):
-    """Class for the ES0 filter station X01DA-ES0-FI:"""
-
-    Mo400 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=1, kind="config", doc="Mo400 filter")
-    Mo300 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=2, kind="config", doc="Mo300 filter")
-    Mo200 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=3, kind="config", doc="Mo200 filter")
-    Zn500 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=4, kind="config", doc="Zn500 filter")
-    Zn250 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=5, kind="config", doc="Zn250 filter")
-    Zn125 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=6, kind="config", doc="Zn125 filter")
-    Zn50 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=7, kind="config", doc="Zn50 filter")
-    Zn25 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=8, kind="config", doc="Zn25 filter")
-    Al500 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=9, kind="config", doc="Al500 filter")
-    Al320 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=10, kind="config", doc="Al320 filter")
-    Al200 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=11, kind="config", doc="Al200 filter")
-    Al100 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=12, kind="config", doc="Al100 filter")
-    Al50 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=13, kind="config", doc="Al50 filter")
-    Al20 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=14, kind="config", doc="Al20 filter")
-    Al10 = Cpt(EpicsSignalWithRBVBit, suffix="BIO", bit=15, kind="config", doc="Al10 filter")

debye_bec/devices/ionization_chambers/ionization_chamber.py

@@ -1,434 +0,0 @@
-"""Ionization chamber device class"""
-
-from __future__ import annotations
-
-from typing import TYPE_CHECKING, Literal
-
-import numpy as np
-from ophyd import Component as Cpt
-from ophyd import Device
-from ophyd import DynamicDeviceComponent as Dcpt
-from ophyd import EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV
-from ophyd_devices import CompareStatus, DeviceStatus, SubscriptionStatus, TransitionStatus
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from typeguard import typechecked
-
-from debye_bec.devices.ionization_chambers.ionization_chamber_enums import (
-    AmplifierEnable,
-    AmplifierFilter,
-    AmplifierGain,
-)
-
-if TYPE_CHECKING:  # pragma: no cover
-    from bec_lib.devicemanager import ScanInfo
-
-
-class EpicsSignalSplit(EpicsSignal):
-    """Wrapper around EpicsSignal with different read and write pv"""
-
-    def __init__(self, prefix, **kwargs):
-        super().__init__(prefix + "-RB", write_pv=prefix + "Set", **kwargs)
-
-
-class GasMixSetupControl(Device):
-    """GasMixSetup Control for Inonization Chamber 0"""
-
-    gas1_req = Cpt(EpicsSignalWithRBV, suffix="Gas1Req", kind="omitted", doc="Gas 1 requirement")
-    conc1_req = Cpt(
-        EpicsSignalWithRBV, suffix="Conc1Req", kind="omitted", doc="Concentration 1 requirement"
-    )
-    gas2_req = Cpt(EpicsSignalWithRBV, suffix="Gas2Req", kind="omitted", doc="Gas 2 requirement")
-    conc2_req = Cpt(
-        EpicsSignalWithRBV, suffix="Conc2Req", kind="omitted", doc="Concentration 2 requirement"
-    )
-    press_req = Cpt(
-        EpicsSignalWithRBV, suffix="PressReq", kind="omitted", doc="Pressure requirement"
-    )
-    fill = Cpt(EpicsSignal, suffix="Fill", kind="config", doc="Fill the chamber")
-    status = Cpt(EpicsSignalRO, suffix="Status", kind="config", doc="Status")
-    gas1 = Cpt(EpicsSignalRO, suffix="Gas1", kind="config", doc="Gas 1")
-    gas1_string = Cpt(EpicsSignalRO, suffix="Gas1", kind="config", doc="Gas 1", string=True)
-    conc1 = Cpt(EpicsSignalRO, suffix="Conc1", kind="config", doc="Concentration 1")
-    gas2 = Cpt(EpicsSignalRO, suffix="Gas2", kind="config", doc="Gas 2")
-    gas2_string = Cpt(EpicsSignalRO, suffix="Gas2", kind="config", doc="Gas 2", string=True)
-    conc2 = Cpt(EpicsSignalRO, suffix="Conc2", kind="config", doc="Concentration 2")
-    press = Cpt(EpicsSignalRO, suffix="PressTransm", kind="config", doc="Current Pressure")
-
-
-class HighVoltageSuppliesControl(Device):
-    """HighVoltage Supplies Control for Ionization Chamber 0"""
-
-    hv_v = Cpt(EpicsSignalSplit, suffix="HV2-V", kind="config", doc="HV voltage")
-    hv_i = Cpt(EpicsSignalSplit, suffix="HV2-I", kind="config", doc="HV current")
-    grid_v = Cpt(EpicsSignalSplit, suffix="HV1-V", kind="config", doc="Grid voltage")
-    grid_i = Cpt(EpicsSignalSplit, suffix="HV1-I", kind="config", doc="Grid current")
-
-
-class IonizationChamber0(PSIDeviceBase):
-    """Ionization Chamber 0, prefix should be 'X01DA-'."""
-
-    USER_ACCESS = ["set_gain", "set_filter", "set_hv", "set_grid", "fill"]
-
-    num = 1
-    amp_signals = {
-        "cOnOff": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}"},
-        ),
-        "cGain_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}"},
-        ),
-        "cFilter_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}"},
-        ),
-        "cOnOff_string": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cGain_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cFilter_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}", "string": True},
-        ),
-    }
-    amp = Dcpt(amp_signals)
-    gmes = Cpt(GasMixSetupControl, suffix=f"ES-GMES:IC{num-1}")
-    gmes_status_msg = Cpt(EpicsSignalRO, suffix="ES-GMES:StatusMsg0", kind="config", doc="Status")
-    hv = Cpt(HighVoltageSuppliesControl, suffix=f"ES1-IC{num-1}:")
-    hv_en_signals = {
-        "ext_ena": (
-            EpicsSignalRO,
-            "ES1-IC0:HV-Ext-Ena",
-            {"kind": "config", "doc": "External enable signal of HV"},
-        ),
-        "ena": (EpicsSignal, "ES1-IC0:HV-Ena", {"kind": "config", "doc": "Enable signal of HV"}),
-    }
-    hv_en = Dcpt(hv_en_signals)
-
-    def __init__(self, name: str, prefix: str = "", scan_info: ScanInfo | None = None, **kwargs):
-        self.timeout_for_pvwait = 2.5
-        super().__init__(name=name, prefix=prefix, scan_info=scan_info, **kwargs)
-
-    @typechecked
-    def set_gain(self, gain: Literal["1e6", "1e7", "5e7", "1e8", "1e9"]) -> None:
-        """Configure the gain setting of the specified channel
-
-        Args:
-            gain (Literal['1e6', '1e7', '5e7', '1e8', '1e9']) : Desired gain
-        """
-
-        if self.amp.cOnOff.get() == AmplifierEnable.OFF:
-            status = CompareStatus(self.amp.cOnOff, AmplifierEnable.ON)
-            self.cancel_on_stop(status)
-            self.amp.cOnOff.put(AmplifierEnable.ON)
-            status.wait(self.timeout_for_pvwait)
-
-        match gain:
-            case "1e6":
-                self.amp.cGain_ENUM.put(AmplifierGain.G1E6)
-            case "1e7":
-                self.amp.cGain_ENUM.put(AmplifierGain.G1E7)
-            case "5e7":
-                self.amp.cGain_ENUM.put(AmplifierGain.G5E7)
-            case "1e8":
-                self.amp.cGain_ENUM.put(AmplifierGain.G1E8)
-            case "1e9":
-                self.amp.cGain_ENUM.put(AmplifierGain.G1E9)
-
-    def set_filter(
-        self, value: Literal["1us", "3us", "10us", "30us", "100us", "300us", "1ms", "3ms"]
-    ) -> None:
-        """Configure the filter setting of the specified channel
-
-        Args:
-            value (Literal['1us','3us','10us','30us','100us','300us','1ms','3ms']) :Desired filter
-        """
-        if self.amp.cOnOff.get() == AmplifierEnable.OFF:
-            status = CompareStatus(self.amp.cOnOff, AmplifierEnable.ON)
-            self.cancel_on_stop(status)
-            self.amp.cOnOff.put(AmplifierEnable.ON)
-            status.wait(self.timeout_for_pvwait)
-
-        match value:
-            case "1us":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F1US)
-            case "3us":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F3US)
-            case "10us":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F10US)
-            case "30us":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F30US)
-            case "100us":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F100US)
-            case "300us":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F300US)
-            case "1ms":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F1MS)
-            case "3ms":
-                self.amp.cFilter_ENUM.put(AmplifierFilter.F3MS)
-
-    @typechecked
-    def set_hv(self, hv: float) -> None:
-        """Configure the high voltage settings , this will
-        enable the high voltage (if external enable is active)!
-
-        Args:
-            hv (float) : Desired voltage for the 'HV' terminal. Voltage has to be between 0...3000
-        """
-
-        if not 0 <= hv <= 3000:
-            raise ValueError(f"specified HV {hv} not within range [0 .. 3000]")
-        if not np.isclose(np.abs(hv - self.hv.grid_v.get()), 0, atol=3):
-            raise ValueError(f"Grid {self.hv.grid_v.get()} must not be higher than HV {hv}!")
-
-        if not self.hv_en.ena.get() == 1:
-            status = CompareStatus(self.hv_en.ena, 1)
-            self.cancel_on_stop(status)
-            self.hv_en.ena.put(1)
-            status.wait(self.timeout_for_pvwait)
-
-        # Set current fixed to 3 mA (max)
-        self.hv.hv_i.put(3)
-        self.hv.hv_v.put(hv)
-
-    @typechecked
-    def set_grid(self, grid: float) -> None:
-        """Configure the high voltage settings , this will
-        enable the high voltage (if external enable is active)!
-
-        Args:
-            grid (float) : Desired voltage for the 'Grid' terminal,
-                           Grid Voltage has to be between 0...3000
-        """
-
-        if not 0 <= grid <= 3000:
-            raise ValueError(f"specified Grid {grid} not within range [0 .. 3000]")
-        if not np.isclose(np.abs(grid - self.hv.hv_v.get()), 0, atol=3):
-            raise ValueError(f"Grid {grid} must not be higher than HV {self.hv.hv_v.get()}!")
-
-        if not self.hv_en.ena.get() == 1:
-            status = CompareStatus(self.hv_en.ena, 1)
-            self.cancel_on_stop(status)
-            self.hv_en.ena.put(1)
-            status.wait(self.timeout_for_pvwait)
-
-        # Set current fixed to 3 mA (max)
-        self.hv.grid_i.put(3)
-        self.hv.grid_v.put(grid)
-
-    @typechecked
-    def fill(
-        self,
-        gas1: Literal["He", "N2", "Ar", "Kr"],
-        conc1: float,
-        gas2: Literal["He", "N2", "Ar", "Kr"],
-        conc2: float,
-        pressure: float,
-        *,
-        wait: bool = False,
-    ) -> DeviceStatus | None:
-        """Fill an ionization chamber with the specified gas mixture.
-
-        Args:
-            gas1 (Literal['He', 'N2', 'Ar', 'Kr']) : Gas 1 requirement,
-            conc1 (float) : Concentration 1 requirement in %,
-            gas2 (Literal['He', 'N2', 'Ar', 'Kr']) : Gas 2 requirement,
-            conc2 (float) : Concentration 2 requirement in %,
-            pressure (float) : Required pressure in bar abs,
-            wait (bool): If you like to wait for the filling to finish.
-        """
-
-        if not 0 <= conc1 <= 100:
-            raise ValueError(f"Concentration 1 {conc1} out of range [0 .. 100 %]")
-        if not 0 <= conc2 <= 100:
-            raise ValueError(f"Concentration 2 {conc2} out of range [0 .. 100 %]")
-        if not np.isclose((conc1 + conc2), 100, atol=0.1):
-            raise ValueError(f"Conc1 {conc1} and conc2 {conc2} must sum to 100 +- 0.1")
-        if not 0 <= pressure <= 3:
-            raise ValueError(f"Pressure {pressure} out of range [0 .. 3 bar abs]")
-
-        self.gmes.gas1_req.set(gas1).wait(timeout=3)
-        self.gmes.conc1_req.set(conc1).wait(timeout=3)
-        self.gmes.gas2_req.set(gas2).wait(timeout=3)
-        self.gmes.conc2_req.set(conc2).wait(timeout=3)
-
-        status = TransitionStatus(self.gmes.status.get(), [0, 1])
-        self.cancel_on_stop(status)
-        self.gmes.fill.put(1)
-        if wait:
-            status.wait(timeout=360)
-        else:
-            return status
-
-
-class IonizationChamber1(IonizationChamber0):
-    """Ionization Chamber 1, prefix should be 'X01DA-'."""
-
-    num = 2
-    amp_signals = {
-        "cOnOff": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}"},
-        ),
-        "cGain_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}"},
-        ),
-        "cFilter_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}"},
-        ),
-        "cOnOff_string": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cGain_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cFilter_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}", "string": True},
-        ),
-    }
-    amp = Dcpt(amp_signals)
-    gmes = Cpt(GasMixSetupControl, suffix=f"ES-GMES:IC{num-1}")
-    gmes_status_msg = Cpt(EpicsSignalRO, suffix="ES-GMES:StatusMsg0", kind="config", doc="Status")
-    hv = Cpt(HighVoltageSuppliesControl, suffix=f"ES2-IC{num-1}:")
-    hv_en_signals = {
-        "ext_ena": (
-            EpicsSignalRO,
-            "ES2-IC12:HV-Ext-Ena",
-            {"kind": "config", "doc": "External enable signal of HV"},
-        ),
-        "ena": (EpicsSignal, "ES2-IC12:HV-Ena", {"kind": "config", "doc": "Enable signal of HV"}),
-    }
-    hv_en = Dcpt(hv_en_signals)
-
-
-class IonizationChamber2(IonizationChamber0):
-    """Ionization Chamber 2, prefix should be 'X01DA-'."""
-
-    num = 3
-    amp_signals = {
-        "cOnOff": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}"},
-        ),
-        "cGain_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}"},
-        ),
-        "cFilter_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}"},
-        ),
-        "cOnOff_string": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cGain_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cFilter_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}", "string": True},
-        ),
-    }
-    amp = Dcpt(amp_signals)
-    gmes = Cpt(GasMixSetupControl, suffix=f"ES-GMES:IC{num-1}")
-    gmes_status_msg = Cpt(EpicsSignalRO, suffix="ES-GMES:StatusMsg0", kind="config", doc="Status")
-    hv = Cpt(HighVoltageSuppliesControl, suffix=f"ES2-IC{num-1}:")
-    hv_en_signals = {
-        "ext_ena": (
-            EpicsSignalRO,
-            "ES2-IC12:HV-Ext-Ena",
-            {"kind": "config", "doc": "External enable signal of HV"},
-        ),
-        "ena": (EpicsSignal, "ES2-IC12:HV-Ena", {"kind": "config", "doc": "Enable signal of HV"}),
-    }
-    hv_en = Dcpt(hv_en_signals)
-
-class Pips(IonizationChamber0):
-    """Pips, prefix should be 'X01DA-'."""
-
-    USER_ACCESS = ["set_gain", "set_filter"]
-
-    num = 4
-    amp_signals = {
-        "cOnOff": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}"},
-        ),
-        "cGain_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}"},
-        ),
-        "cFilter_ENUM": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}"},
-        ),
-        "cOnOff_string": (
-            EpicsSignal,
-            (f"ES:AMP5004.cOnOff{num}"),
-            {"kind": "config", "doc": f"Enable ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cGain_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cGain{num}_ENUM"),
-            {"kind": "config", "doc": f"Gain of ch{num} -> IC{num-1}", "string": True},
-        ),
-        "cFilter_ENUM_string": (
-            EpicsSignalWithRBV,
-            (f"ES:AMP5004:cFilter{num}_ENUM"),
-            {"kind": "config", "doc": f"Filter of ch{num} -> IC{num-1}", "string": True},
-        ),
-    }
-    amp = Dcpt(amp_signals)
-    gmes = None
-    gmes_status_msg = None
-    hv = None
-    hv_en_signals = None
-    hv_en = None
-
-    @typechecked
-    def set_hv(self, *_) -> None:
-        """Not available for the PIPS"""
-        return None
-
-    @typechecked
-    def set_grid(self, *_) -> None:
-        """Not available for the PIPS"""
-        return None
-
-    @typechecked
-    def fill(self, *_) -> None:
-        """Not available for the PIPS"""
-        return None

debye_bec/devices/ionization_chambers/ionization_chamber_enums.py

@@ -1,32 +0,0 @@
-import enum
-
-
-class AmplifierEnable(int, enum.Enum):
-    """Enum class for the enable signal of the channel"""
-
-    OFF = 0
-    STARTUP = 1
-    ON = 2
-
-
-class AmplifierGain(int, enum.Enum):
-    """Enum class for the gain of the channel"""
-
-    G1E6 = 0
-    G1E7 = 1
-    G5E7 = 2
-    G1E8 = 3
-    G1E9 = 4
-
-
-class AmplifierFilter(int, enum.Enum):
-    """Enum class for the filter of the channel"""
-
-    F1US = 0
-    F3US = 1
-    F10US = 2
-    F30US = 3
-    F100US = 4
-    F300US = 5
-    F1MS = 6
-    F3MS = 7

debye_bec/devices/mo1_bragg/mo1_bragg.py

@@ -1,479 +0,0 @@
-"""Module for the Mo1 Bragg positioner of the Debye beamline.
-The softIOC is reachable via the EPICS prefix X01DA-OP-MO1:BRAGG: and connected
-to a motor controller via web sockets. The Mo1 Bragg positioner is not only a
-positioner, but also a scan controller to setup XAS and XRD scans. A few scan modes
-are programmed in the controller, e.g. simple and advanced XAS scans + XRD triggering mode.
-
-Note: For some of the Epics PVs, in particular action buttons, the put_complete=True is
-used to ensure that the action is executed completely. This is believed
-to allow for a more stable execution of the action."""
-
-import time
-from typing import Literal
-
-from bec_lib.devicemanager import ScanInfo
-from bec_lib.logger import bec_logger
-from ophyd import Component as Cpt
-from ophyd import DeviceStatus, StatusBase
-from ophyd.status import WaitTimeoutError
-from ophyd_devices import CompareStatus, ProgressSignal, TransitionStatus
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from pydantic import BaseModel, Field
-from typeguard import typechecked
-
-from debye_bec.devices.mo1_bragg.mo1_bragg_devices import Mo1BraggPositioner
-
-# pylint: disable=unused-import
-from debye_bec.devices.mo1_bragg.mo1_bragg_enums import (
-    MoveType,
-    ScanControlLoadMessage,
-    ScanControlMode,
-    ScanControlScanStatus,
-    TriggerControlMode,
-    TriggerControlSource,
-)
-from debye_bec.devices.mo1_bragg.mo1_bragg_utils import compute_spline
-
-# Initialise logger
-logger = bec_logger.logger
-
-########### Exceptions ###########
-
-
-class Mo1BraggError(Exception):
-    """Exception for the Mo1 Bragg positioner"""
-
-
-########## Scan Parameter Model  ##########
-
-
-class ScanParameter(BaseModel):
-    """Dataclass to store the scan parameters for the Mo1 Bragg positioner.
-    This needs to be in sync with the kwargs of the MO1 Bragg scans from Debye, to
-    ensure that the scan parameters are correctly set. Any changes in the scan kwargs,
-    i.e. renaming or adding new parameters, need to be represented here as well."""
-
-    scan_time: float | None = Field(None, description="Scan time for a half oscillation")
-    scan_duration: float | None = Field(None, description="Duration of the scan")
-    break_enable_low: bool | None = Field(
-        None, description="Break enabled for low, should be PV trig_ena_lo_enum"
-    )  # trig_enable_low: bool = None
-    break_enable_high: bool | None = Field(
-        None, description="Break enabled for high, should be PV trig_ena_hi_enum"
-    )  # trig_enable_high: bool = None
-    break_time_low: float | None = Field(None, description="Break time low energy/angle")
-    break_time_high: float | None = Field(None, description="Break time high energy/angle")
-    cycle_low: int | None = Field(None, description="Cycle for low energy/angle")
-    cycle_high: int | None = Field(None, description="Cycle for high energy/angle")
-    exp_time: float | None = Field(None, description="XRD trigger period")
-    n_of_trigger: int | None = Field(None, description="Amount of XRD triggers")
-    start: float | None = Field(None, description="Start value for energy/angle")
-    stop: float | None = Field(None, description="Stop value for energy/angle")
-    p_kink: float | None = Field(None, description="P Kink")
-    e_kink: float | None = Field(None, description="Energy Kink")
-    model_config: dict = {"validate_assignment": True}
-
-
-########### Mo1 Bragg Motor Class ###########
-
-
-class Mo1Bragg(PSIDeviceBase, Mo1BraggPositioner):
-    """Mo1 Bragg motor for the Debye beamline.
-
-    The prefix to connect to the soft IOC is X01DA-OP-MO1:BRAGG:
-    """
-
-    progress_signal = Cpt(ProgressSignal, name="progress_signal")
-
-    USER_ACCESS = ["set_advanced_xas_settings", "set_xtal"]
-
-    def __init__(self, name: str, prefix: str = "", scan_info: ScanInfo | None = None, **kwargs):  # type: ignore
-        """
-        Initialize the PSI Device Base class.
-
-        Args:
-            name (str) : Name of the device
-            scan_info (ScanInfo): The scan info to use.
-        """
-        super().__init__(name=name, scan_info=scan_info, prefix=prefix, **kwargs)
-        self.scan_parameter = ScanParameter()
-        self.timeout_for_pvwait = 7.5
-
-    ########################################
-    #  Beamline Specific Implementations   #
-    ########################################
-
-    def on_init(self) -> None:
-        """
-        Called when the device is initialized.
-
-        No signals are connected at this point. If you like to
-        set default values on signals, please use on_connected instead.
-        """
-
-    def on_connected(self) -> None:
-        """
-        Called after the device is connected and its signals are connected.
-        Default values for signals should be set here.
-        """
-        self.scan_control.scan_progress.subscribe(self._progress_update, run=False)
-
-    def on_stage(self) -> DeviceStatus | StatusBase | None:
-        """
-        Called while staging the device.
-
-        Information about the upcoming scan can be accessed from the scan_info (self.scan_info.msg) object.
-        """
-        if self.scan_control.scan_msg.get() != ScanControlLoadMessage.PENDING:
-            status = CompareStatus(self.scan_control.scan_msg, ScanControlLoadMessage.PENDING)
-            self.cancel_on_stop(status)
-            self.scan_control.scan_val_reset.put(1)
-            status.wait(timeout=self.timeout_for_pvwait)
-
-        scan_name = self.scan_info.msg.scan_name
-        self._update_scan_parameter()
-        if scan_name == "xas_simple_scan":
-            self.set_xas_settings(
-                low=self.scan_parameter.start,
-                high=self.scan_parameter.stop,
-                scan_time=self.scan_parameter.scan_time,
-            )
-            self.set_trig_settings(
-                enable_low=False,
-                enable_high=False,
-                break_time_low=0,
-                break_time_high=0,
-                cycle_low=0,
-                cycle_high=0,
-                exp_time=0,
-                n_of_trigger=0,
-            )
-            self.set_scan_control_settings(
-                mode=ScanControlMode.SIMPLE, scan_duration=self.scan_parameter.scan_duration
-            )
-        elif scan_name == "xas_simple_scan_with_xrd":
-            self.set_xas_settings(
-                low=self.scan_parameter.start,
-                high=self.scan_parameter.stop,
-                scan_time=self.scan_parameter.scan_time,
-            )
-            self.set_trig_settings(
-                enable_low=self.scan_parameter.break_enable_low,
-                enable_high=self.scan_parameter.break_enable_high,
-                break_time_low=self.scan_parameter.break_time_low,
-                break_time_high=self.scan_parameter.break_time_high,
-                cycle_low=self.scan_parameter.cycle_low,
-                cycle_high=self.scan_parameter.cycle_high,
-                exp_time=self.scan_parameter.exp_time,
-                n_of_trigger=self.scan_parameter.n_of_trigger,
-            )
-            self.set_scan_control_settings(
-                mode=ScanControlMode.SIMPLE, scan_duration=self.scan_parameter.scan_duration
-            )
-        elif scan_name == "xas_advanced_scan":
-            self.set_advanced_xas_settings(
-                low=self.scan_parameter.start,
-                high=self.scan_parameter.stop,
-                scan_time=self.scan_parameter.scan_time,
-                p_kink=self.scan_parameter.p_kink,
-                e_kink=self.scan_parameter.e_kink,
-            )
-            self.set_trig_settings(
-                enable_low=False,
-                enable_high=False,
-                break_time_low=0,
-                break_time_high=0,
-                cycle_low=0,
-                cycle_high=0,
-                exp_time=0,
-                n_of_trigger=0,
-            )
-            self.set_scan_control_settings(
-                mode=ScanControlMode.ADVANCED, scan_duration=self.scan_parameter.scan_duration
-            )
-        elif scan_name == "xas_advanced_scan_with_xrd":
-            self.set_advanced_xas_settings(
-                low=self.scan_parameter.start,
-                high=self.scan_parameter.stop,
-                scan_time=self.scan_parameter.scan_time,
-                p_kink=self.scan_parameter.p_kink,
-                e_kink=self.scan_parameter.e_kink,
-            )
-            self.set_trig_settings(
-                enable_low=self.scan_parameter.break_enable_low,
-                enable_high=self.scan_parameter.break_enable_high,
-                break_time_low=self.scan_parameter.break_time_low,
-                break_time_high=self.scan_parameter.break_time_high,
-                cycle_low=self.scan_parameter.cycle_low,
-                cycle_high=self.scan_parameter.cycle_high,
-                exp_time=self.scan_parameter.exp_time,
-                n_of_trigger=self.scan_parameter.n_of_trigger,
-            )
-            self.set_scan_control_settings(
-                mode=ScanControlMode.ADVANCED, scan_duration=self.scan_parameter.scan_duration
-            )
-        else:
-            return
-        # Setting scan duration seems to lag behind slightly in the backend, include small sleep
-        logger.info(f"Sleeping for one second")
-        time.sleep(1)
-        logger.info(f"Device {self.name}, done sleeping")
-        # Load the scan parameters to the controller
-        status = CompareStatus(self.scan_control.scan_msg, ScanControlLoadMessage.SUCCESS)
-        self.cancel_on_stop(status)
-        self.scan_control.scan_load.put(1)
-        # Wait for params to be checked from controller
-        status.wait(self.timeout_for_pvwait)
-        return None
-
-    def on_unstage(self) -> DeviceStatus | StatusBase | None:
-        """Called while unstaging the device."""
-        if self.stopped is True:
-            logger.warning(f"Resetting stopped in unstage for device {self.name}.")
-            self._stopped = False
-        if self.scan_control.scan_msg.get() in [
-            ScanControlLoadMessage.STARTED,
-            ScanControlLoadMessage.SUCCESS,
-        ]:
-            status = CompareStatus(self.scan_control.scan_msg, ScanControlLoadMessage.PENDING)
-            self.cancel_on_stop(status)
-            try:
-                status.wait(2)
-                return None
-            except WaitTimeoutError:
-                logger.warning(
-                    f"Timeout in on_unstage of {self.name} after {self.timeout_for_pvwait}s, current scan_control_message : {self.scan_control.scan_msg.get()}"
-                )
-                status = CompareStatus(self.scan_control.scan_msg, ScanControlLoadMessage.PENDING)
-                self.cancel_on_stop(status)
-                self.scan_control.scan_val_reset.put(1)
-                status.wait(timeout=self.timeout_for_pvwait)
-        else:
-            status = CompareStatus(self.scan_control.scan_msg, ScanControlLoadMessage.PENDING)
-            self.cancel_on_stop(status)
-            self.scan_control.scan_val_reset.put(1)
-            status.wait(timeout=self.timeout_for_pvwait)
-        return None
-
-    def on_pre_scan(self) -> DeviceStatus | StatusBase | None:
-        """Called right before the scan starts on all devices automatically."""
-
-    def on_trigger(self) -> DeviceStatus | StatusBase | None:
-        """Called when the device is triggered."""
-
-    def on_complete(self) -> DeviceStatus | StatusBase | None:
-        """Called to inquire if a device has completed a scans."""
-        status = CompareStatus(self.scan_control.scan_done, 1)
-        self.cancel_on_stop(status)
-        return status
-
-    def on_kickoff(self) -> DeviceStatus | StatusBase | None:
-        """Called to kickoff a device for a fly scan. Has to be called explicitly."""
-        scan_duration = self.scan_control.scan_duration.get()
-        # TODO implement better logic for infinite scans, at least bring it up with Debye
-        start_func = (
-            self.scan_control.scan_start_infinite.put
-            if scan_duration < 0.1
-            else self.scan_control.scan_start_timer.put
-        )
-        status = TransitionStatus(
-            self.scan_control.scan_status,
-            transitions=[ScanControlScanStatus.READY, ScanControlScanStatus.RUNNING],
-            strict=True,
-            failure_states=[ScanControlScanStatus.PARAMETER_WRONG],
-        )
-        self.cancel_on_stop(status)
-        start_func(1)
-        return status
-
-    def on_stop(self) -> None:
-        """Called when the device is stopped."""
-        self.stopped = True  # Needs to be set to stop motion
-
-    ######### Utility Methods #########
-    def _progress_update(self, value, **kwargs) -> None:
-        """Callback method to update the scan progress, runs a callback
-        to SUB_PROGRESS subscribers, i.e. BEC.
-
-        Args:
-            value (int) : current progress value
-        """
-        max_value = 100
-        self.progress_signal.put(value=value, max_value=max_value, done=bool(max_value == value))
-
-    def set_xas_settings(self, low: float, high: float, scan_time: float) -> None:
-        """Set XAS parameters for upcoming scan.
-
-        Args:
-            low (float): Low energy/angle value of the scan
-            high (float): High energy/angle value of the scan
-            scan_time (float): Time for a half oscillation
-        """
-
-        status_list = []
-
-        status_list.append(self.scan_settings.s_scan_energy_lo.set(low))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.s_scan_energy_hi.set(high))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.s_scan_scantime.set(scan_time))
-        self.cancel_on_stop(status_list[-1])
-
-        for s in status_list:
-            s.wait(timeout=self.timeout_for_pvwait)
-
-    @typechecked
-    def convert_angle_energy(
-        self, mode: Literal["AngleToEnergy", "EnergyToAngle"], inp: float
-    ) -> float:
-        """Calculate energy to angle or vice versa
-
-        Args:
-            mode (Literal["AngleToEnergy", "EnergyToAngle"]): Mode of calculation
-            input (float): Either angle or energy
-
-        Returns:
-            output (float): Converted angle or energy
-        """
-        self.calculator.calc_reset.put(0)
-        self.calculator.calc_reset.put(1)
-        status = CompareStatus(self.calculator.calc_done, 0)
-        self.cancel_on_stop(status)
-        status.wait(self.timeout_for_pvwait)
-
-        if mode == "AngleToEnergy":
-            self.calculator.calc_angle.put(inp)
-        elif mode == "EnergyToAngle":
-            self.calculator.calc_energy.put(inp)
-
-        status = CompareStatus(self.calculator.calc_done, 1)
-        self.cancel_on_stop(status)
-        status.wait(self.timeout_for_pvwait)
-        time.sleep(0.25)  # TODO needed still? Needed due to update frequency of softIOC
-        if mode == "AngleToEnergy":
-            return self.calculator.calc_energy.get()
-        elif mode == "EnergyToAngle":
-            return self.calculator.calc_angle.get()
-
-    def set_advanced_xas_settings(
-        self, low: float, high: float, scan_time: float, p_kink: float, e_kink: float
-    ) -> None:
-        """Set Advanced XAS parameters for upcoming scan.
-
-        Args:
-            low (float): Low angle value of the scan in eV
-            high (float): High angle value of the scan in eV
-            scan_time (float): Time for a half oscillation in s
-            p_kink (float): Position of kink in %
-            e_kink (float): Energy of kink in eV
-        """
-        e_kink_deg = self.convert_angle_energy(mode="EnergyToAngle", inp=e_kink)
-        # Angle and Energy are inverse proportional!
-        high_deg = self.convert_angle_energy(mode="EnergyToAngle", inp=low)
-        low_deg = self.convert_angle_energy(mode="EnergyToAngle", inp=high)
-
-        pos, vel, dt = compute_spline(
-            low_deg=low_deg,
-            high_deg=high_deg,
-            p_kink=p_kink,
-            e_kink_deg=e_kink_deg,
-            scan_time=scan_time,
-        )
-
-        status_list = []
-
-        status_list.append(self.scan_settings.a_scan_pos.set(pos))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.a_scan_vel.set(vel))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.a_scan_time.set(dt))
-        self.cancel_on_stop(status_list[-1])
-
-        for s in status_list:
-            s.wait(timeout=self.timeout_for_pvwait)
-
-    def set_trig_settings(
-        self,
-        enable_low: bool,
-        enable_high: bool,
-        break_time_low: float,
-        break_time_high: float,
-        cycle_low: int,
-        cycle_high: int,
-        exp_time: float,
-        n_of_trigger: int,
-    ) -> None:
-        """Set TRIG settings for the upcoming scan.
-
-        Args:
-            enable_low (bool): Enable TRIG for low energy/angle
-            enable_high (bool): Enable TRIG for high energy/angle
-            break_time_low (float): Exposure time for low energy/angle
-            break_time_high (float): Exposure time for high energy/angle
-            cycle_low (int): Cycle for low energy/angle
-            cycle_high (int): Cycle for high energy/angle
-            exp_time (float): Length of 1 trigger period in seconds
-            n_of_trigger (int): Amount of triggers to be fired during brake
-        """
-
-        status_list = []
-
-        status_list.append(self.scan_settings.trig_ena_hi_enum.set(int(enable_high)))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.trig_ena_lo_enum.set(int(enable_low)))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.trig_time_hi.set(break_time_high))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.trig_time_lo.set(break_time_low))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.trig_every_n_hi.set(cycle_high))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_settings.trig_every_n_lo.set(cycle_low))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.trigger_settings.xrd_trig_period.set(exp_time))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.trigger_settings.xrd_n_of_trig.set(n_of_trigger))
-        self.cancel_on_stop(status_list[-1])
-
-        for s in status_list:
-            s.wait(timeout=self.timeout_for_pvwait)
-
-    def set_scan_control_settings(self, mode: ScanControlMode, scan_duration: float) -> None:
-        """Set the scan control settings for the upcoming scan.
-
-        Args:
-            mode (ScanControlMode): Mode for the scan, either simple or advanced
-            scan_duration (float): Duration of the scan
-        """
-        val = ScanControlMode(mode).value
-
-        status_list = []
-
-        status_list.append(self.scan_control.scan_mode_enum.set(val))
-        self.cancel_on_stop(status_list[-1])
-
-        status_list.append(self.scan_control.scan_duration.set(scan_duration))
-        self.cancel_on_stop(status_list[-1])
-
-        for s in status_list:
-            s.wait(timeout=self.timeout_for_pvwait)
-
-    def _update_scan_parameter(self):
-        """Get the scan_info parameters for the scan."""
-        for key, value in self.scan_info.msg.request_inputs["inputs"].items():
-            if hasattr(self.scan_parameter, key):
-                setattr(self.scan_parameter, key, value)
-        for key, value in self.scan_info.msg.request_inputs["kwargs"].items():
-            if hasattr(self.scan_parameter, key):
-                setattr(self.scan_parameter, key, value)

debye_bec/devices/mo1_bragg/mo1_bragg_angle.py

@@ -1,20 +0,0 @@
-"""Positioner implementation with readback angle of the MO1 Bragg positioner."""
-
-from ophyd import Component as Cpt
-from ophyd import EpicsSignalRO, EpicsSignalWithRBV
-
-from debye_bec.devices.mo1_bragg.mo1_bragg_devices import Mo1BraggPositioner
-
-
-class Mo1BraggAngle(Mo1BraggPositioner):
-    """Positioner implementation with readback angle of the MO1 Bragg positioner."""
-
-    readback = Cpt(EpicsSignalRO, suffix="feedback_pos_angle_RBV", kind="normal", auto_monitor=True)
-    setpoint = Cpt(EpicsSignalWithRBV, suffix="set_abs_pos_angle", kind="normal", auto_monitor=True)
-    low_lim = Cpt(EpicsSignalRO, suffix="lo_lim_pos_angle_RBV", kind="config", auto_monitor=True)
-    high_lim = Cpt(EpicsSignalRO, suffix="hi_lim_pos_angle_RBV", kind="config", auto_monitor=True)
-
-    @property
-    def egu(self) -> str:
-        """Return the engineering unit of the positioner."""
-        return "deg"

debye_bec/devices/mo1_bragg/mo1_bragg_devices.py

@@ -1,442 +0,0 @@
-"""Module for the Mo1 Bragg positioner"""
-
-import threading
-import time
-import traceback
-from typing import Literal
-
-from bec_lib.logger import bec_logger
-from ophyd import Component as Cpt
-from ophyd import (
-    Device,
-    DeviceStatus,
-    EpicsSignal,
-    EpicsSignalRO,
-    EpicsSignalWithRBV,
-    PositionerBase,
-    Signal,
-)
-from ophyd.utils import LimitError
-
-from debye_bec.devices.mo1_bragg.mo1_bragg_enums import MoveType
-
-# Initialise logger
-logger = bec_logger.logger
-
-############# Exceptions #############
-
-
-class Mo1BraggStoppedError(Exception):
-    """Exception to raise when the Bragg positioner is stopped."""
-
-
-############# Signal classes #############
-
-
-class MoveTypeSignal(Signal):
-    """Custom Signal to set the move type of the Bragg positioner"""
-
-    # pylint: disable=arguments-differ
-    def set(self, value: str | MoveType) -> None:
-        """Returns currently active move method
-
-        Args:
-            value (str | MoveType) : Can be either 'energy' or 'angle'
-        """
-
-        value = MoveType(value.lower())
-        self._readback = value.value
-
-
-############# Utility devices to separate the namespace #############
-
-
-class Mo1BraggStatus(Device):
-    """Mo1 Bragg PVs for status monitoring"""
-
-    error_status = Cpt(EpicsSignalRO, suffix="error_status_RBV", kind="config", auto_monitor=True)
-    brake_enabled = Cpt(EpicsSignalRO, suffix="brake_enabled_RBV", kind="config", auto_monitor=True)
-    mot_commutated = Cpt(
-        EpicsSignalRO, suffix="mot_commutated_RBV", kind="config", auto_monitor=True
-    )
-    axis_enabled = Cpt(EpicsSignalRO, suffix="axis_enabled_RBV", kind="config", auto_monitor=True)
-    enc_initialized = Cpt(
-        EpicsSignalRO, suffix="enc_initialized_RBV", kind="config", auto_monitor=True
-    )
-    heartbeat = Cpt(EpicsSignalRO, suffix="heartbeat_RBV", kind="config", auto_monitor=True)
-
-
-class Mo1BraggEncoder(Device):
-    """Mo1 Bragg PVs to communicate with the encoder"""
-
-    enc_reinit = Cpt(EpicsSignal, suffix="enc_reinit", kind="config")
-    enc_reinit_done = Cpt(EpicsSignalRO, suffix="enc_reinit_done_RBV", kind="config")
-
-
-class Mo1BraggCrystal(Device):
-    """Mo1 Bragg PVs to set the crystal parameters"""
-
-    bragg_off_si111 = Cpt(EpicsSignalWithRBV, suffix="bragg_off_si111", kind="config")
-    bragg_off_si311 = Cpt(EpicsSignalWithRBV, suffix="bragg_off_si311", kind="config")
-    phi_off_si111 = Cpt(EpicsSignalWithRBV, suffix="phi_off_si111", kind="config")
-    phi_off_si311 = Cpt(EpicsSignalWithRBV, suffix="phi_off_si311", kind="config")
-    azm_off_si111 = Cpt(EpicsSignalWithRBV, suffix="azm_off_si111", kind="config")
-    azm_off_si311 = Cpt(EpicsSignalWithRBV, suffix="azm_off_si311", kind="config")
-    miscut_si111 = Cpt(EpicsSignalWithRBV, suffix="miscut_si111", kind="config")
-    miscut_si311 = Cpt(EpicsSignalWithRBV, suffix="miscut_si311", kind="config")
-    xtal_enum = Cpt(EpicsSignalWithRBV, suffix="xtal_ENUM", kind="config")
-    d_spacing_si111 = Cpt(EpicsSignalWithRBV, suffix="d_spacing_si111", kind="config")
-    d_spacing_si311 = Cpt(EpicsSignalWithRBV, suffix="d_spacing_si311", kind="config")
-    set_offset = Cpt(EpicsSignal, suffix="set_offset", kind="config", put_complete=True)
-    current_d_spacing = Cpt(
-        EpicsSignalRO, suffix="current_d_spacing_RBV", kind="normal", auto_monitor=True
-    )
-    current_bragg_off = Cpt(
-        EpicsSignalRO, suffix="current_bragg_off_RBV", kind="normal", auto_monitor=True
-    )
-    current_phi_off = Cpt(
-        EpicsSignalRO, suffix="current_phi_off_RBV", kind="normal", auto_monitor=True
-    )
-    current_azm_off = Cpt(
-        EpicsSignalRO, suffix="current_azm_off_RBV", kind="normal", auto_monitor=True
-    )
-    current_miscut = Cpt(
-        EpicsSignalRO, suffix="current_miscut_RBV", kind="normal", auto_monitor=True
-    )
-    current_xtal = Cpt(
-        EpicsSignalRO, suffix="current_xtal_ENUM_RBV", kind="normal", auto_monitor=True
-    )
-    current_xtal_string = Cpt(
-        EpicsSignalRO, suffix="current_xtal_ENUM_RBV", kind="normal", auto_monitor=True, string=True
-    )
-
-
-class Mo1BraggScanSettings(Device):
-    """Mo1 Bragg PVs to set the scan setttings"""
-
-    # TRIG settings
-    trig_select_ref_enum = Cpt(EpicsSignalWithRBV, suffix="trig_select_ref_ENUM", kind="config")
-
-    trig_ena_hi_enum = Cpt(EpicsSignalWithRBV, suffix="trig_ena_hi_ENUM", kind="config")
-    trig_time_hi = Cpt(EpicsSignalWithRBV, suffix="trig_time_hi", kind="config")
-    trig_every_n_hi = Cpt(EpicsSignalWithRBV, suffix="trig_every_n_hi", kind="config")
-
-    trig_ena_lo_enum = Cpt(EpicsSignalWithRBV, suffix="trig_ena_lo_ENUM", kind="config")
-    trig_time_lo = Cpt(EpicsSignalWithRBV, suffix="trig_time_lo", kind="config")
-    trig_every_n_lo = Cpt(EpicsSignalWithRBV, suffix="trig_every_n_lo", kind="config")
-
-    # XAS simple scan settings
-    s_scan_angle_hi = Cpt(EpicsSignalWithRBV, suffix="s_scan_angle_hi", kind="config")
-    s_scan_angle_lo = Cpt(EpicsSignalWithRBV, suffix="s_scan_angle_lo", kind="config")
-    s_scan_energy_lo = Cpt(
-        EpicsSignalWithRBV, suffix="s_scan_energy_lo", kind="config", auto_monitor=True
-    )
-    s_scan_energy_hi = Cpt(
-        EpicsSignalWithRBV, suffix="s_scan_energy_hi", kind="config", auto_monitor=True
-    )
-    s_scan_scantime = Cpt(
-        EpicsSignalWithRBV, suffix="s_scan_scantime", kind="config", auto_monitor=True
-    )
-
-    # XAS advanced scan settings
-    a_scan_pos = Cpt(EpicsSignalWithRBV, suffix="a_scan_pos", kind="config", auto_monitor=True)
-    a_scan_vel = Cpt(EpicsSignalWithRBV, suffix="a_scan_vel", kind="config", auto_monitor=True)
-    a_scan_time = Cpt(EpicsSignalWithRBV, suffix="a_scan_time", kind="config", auto_monitor=True)
-
-
-class Mo1TriggerSettings(Device):
-    """Mo1 Trigger settings"""
-
-    settle_time = Cpt(EpicsSignalWithRBV, suffix="settle_time", kind="config")
-    max_dev = Cpt(EpicsSignalWithRBV, suffix="max_dev", kind="config")
-
-    xrd_trig_src_enum = Cpt(EpicsSignalWithRBV, suffix="xrd_trig_src_ENUM", kind="config")
-    xrd_trig_mode_enum = Cpt(EpicsSignalWithRBV, suffix="xrd_trig_mode_ENUM", kind="config")
-    xrd_trig_len = Cpt(EpicsSignalWithRBV, suffix="xrd_trig_len", kind="config")
-    xrd_trig_period = Cpt(EpicsSignalWithRBV, suffix="xrd_trig_period", kind="config")
-    xrd_n_of_trig = Cpt(EpicsSignalWithRBV, suffix="xrd_n_of_trig", kind="config")
-    xrd_trig_req = Cpt(EpicsSignal, suffix="xrd_trig_req", kind="config")
-
-    falcon_trig_src_enum = Cpt(EpicsSignalWithRBV, suffix="falcon_trig_src_ENUM", kind="config")
-    falcon_trig_mode_enum = Cpt(EpicsSignalWithRBV, suffix="falcon_trig_mode_ENUM", kind="config")
-    falcon_trig_len = Cpt(EpicsSignalWithRBV, suffix="falcon_trig_len", kind="config")
-    falcon_trig_period = Cpt(EpicsSignalWithRBV, suffix="falcon_trig_period", kind="config")
-    falcon_n_of_trig = Cpt(EpicsSignalWithRBV, suffix="falcon_n_of_trig", kind="config")
-    falcon_trig_req = Cpt(EpicsSignal, suffix="falcon_trig_req", kind="config")
-
-    univ1_trig_src_enum = Cpt(EpicsSignalWithRBV, suffix="univ1_trig_src_ENUM", kind="config")
-    univ1_trig_mode_enum = Cpt(EpicsSignalWithRBV, suffix="univ1_trig_mode_ENUM", kind="config")
-    univ1_trig_len = Cpt(EpicsSignalWithRBV, suffix="univ1_trig_len", kind="config")
-    univ1_trig_period = Cpt(EpicsSignalWithRBV, suffix="univ1_trig_period", kind="config")
-    univ1_n_of_trig = Cpt(EpicsSignalWithRBV, suffix="univ1_n_of_trig", kind="config")
-    univ1_trig_req = Cpt(EpicsSignal, suffix="univ1_trig_req", kind="config")
-
-    univ2_trig_src_enum = Cpt(EpicsSignalWithRBV, suffix="univ2_trig_src_ENUM", kind="config")
-    univ2_trig_mode_enum = Cpt(EpicsSignalWithRBV, suffix="univ2_trig_mode_ENUM", kind="config")
-    univ2_trig_len = Cpt(EpicsSignalWithRBV, suffix="univ2_trig_len", kind="config")
-    univ2_trig_period = Cpt(EpicsSignalWithRBV, suffix="univ2_trig_period", kind="config")
-    univ2_n_of_trig = Cpt(EpicsSignalWithRBV, suffix="univ2_n_of_trig", kind="config")
-    univ2_trig_req = Cpt(EpicsSignal, suffix="univ2_trig_req", kind="config")
-
-
-class Mo1BraggCalculator(Device):
-    """Mo1 Bragg PVs to convert angle to energy or vice-versa."""
-
-    calc_reset = Cpt(EpicsSignal, suffix="calc_reset", kind="config", put_complete=True)
-    calc_done = Cpt(EpicsSignalRO, suffix="calc_done_RBV", kind="config")
-    calc_energy = Cpt(EpicsSignalWithRBV, suffix="calc_energy", kind="config")
-    calc_angle = Cpt(EpicsSignalWithRBV, suffix="calc_angle", kind="config")
-
-
-class Mo1BraggScanControl(Device):
-    """Mo1 Bragg PVs to control the scan after setting the parameters."""
-
-    scan_mode_enum = Cpt(EpicsSignalWithRBV, suffix="scan_mode_ENUM", kind="config")
-    scan_duration = Cpt(
-        EpicsSignalWithRBV, suffix="scan_duration", kind="config", auto_monitor=True
-    )
-    scan_load = Cpt(EpicsSignal, suffix="scan_load", kind="config", put_complete=True)
-    scan_msg = Cpt(EpicsSignalRO, suffix="scan_msg_ENUM_RBV", kind="config", auto_monitor=True)
-    scan_start_infinite = Cpt(
-        EpicsSignal, suffix="scan_start_infinite", kind="config", put_complete=True
-    )
-    scan_start_timer = Cpt(EpicsSignal, suffix="scan_start_timer", kind="config", put_complete=True)
-    scan_stop = Cpt(EpicsSignal, suffix="scan_stop", kind="config", put_complete=True)
-    scan_status = Cpt(
-        EpicsSignalRO, suffix="scan_status_ENUM_RBV", kind="config", auto_monitor=True
-    )
-    scan_time_left = Cpt(
-        EpicsSignalRO, suffix="scan_time_left_RBV", kind="config", auto_monitor=True
-    )
-    scan_done = Cpt(EpicsSignalRO, suffix="scan_done_RBV", kind="config", auto_monitor=True)
-    scan_val_reset = Cpt(EpicsSignal, suffix="scan_val_reset", kind="config", put_complete=True)
-    scan_progress = Cpt(EpicsSignalRO, suffix="scan_progress_RBV", kind="config", auto_monitor=True)
-    scan_spectra_done = Cpt(
-        EpicsSignalRO, suffix="scan_n_osc_RBV", kind="config", auto_monitor=True
-    )
-    scan_spectra_left = Cpt(
-        EpicsSignalRO, suffix="scan_n_osc_left_RBV", kind="config", auto_monitor=True
-    )
-
-
-class Mo1BraggPositioner(Device, PositionerBase):
-    """
-    Positioner implementation with readback energy of the MO1 Bragg positioner.
-
-    The prefix to connect to the soft IOC is X01DA-OP-MO1:BRAGG:
-    This soft IOC connects to the NI motor and its control loop.
-    """
-
-    USER_ACCESS = ["set_xtal"]
-
-    ####### Sub-components ########
-    # Namespace is cleaner and easier to maintain
-    crystal = Cpt(Mo1BraggCrystal, "")
-    encoder = Cpt(Mo1BraggEncoder, "")
-    scan_settings = Cpt(Mo1BraggScanSettings, "")
-    trigger_settings = Cpt(Mo1TriggerSettings, "")
-    calculator = Cpt(Mo1BraggCalculator, "")
-    scan_control = Cpt(Mo1BraggScanControl, "")
-    status = Cpt(Mo1BraggStatus, "")
-
-    ############# Energy PVs    #############
-
-    readback = Cpt(
-        EpicsSignalRO, suffix="feedback_pos_energy_RBV", kind="hinted", auto_monitor=True
-    )
-    setpoint = Cpt(
-        EpicsSignalWithRBV, suffix="set_abs_pos_energy", kind="normal", auto_monitor=True
-    )
-    motor_is_moving = Cpt(
-        EpicsSignalRO, suffix="move_abs_done_RBV", kind="normal", auto_monitor=True
-    )
-    low_lim = Cpt(EpicsSignalRO, suffix="lo_lim_pos_energy_RBV", kind="config", auto_monitor=True)
-    high_lim = Cpt(EpicsSignalRO, suffix="hi_lim_pos_energy_RBV", kind="config", auto_monitor=True)
-    velocity = Cpt(EpicsSignalWithRBV, suffix="move_velocity", kind="config", auto_monitor=True)
-
-    angle = Cpt(EpicsSignalRO, suffix="feedback_pos_angle_RBV", kind="normal", auto_monitor=True)
-
-    ########## Move Command PVs   ##########
-
-    move_abs = Cpt(EpicsSignal, suffix="move_abs", kind="config", put_complete=True)
-    move_stop = Cpt(EpicsSignal, suffix="move_stop", kind="config", put_complete=True)
-
-    SUB_READBACK = "readback"
-    _default_sub = SUB_READBACK
-    SUB_PROGRESS = "progress"
-
-    def __init__(self, prefix="", *, name: str, **kwargs):
-        """Initialize the Mo1 Bragg positioner.
-
-        Args:
-            prefix (str): EPICS prefix for the device
-            name (str): Name of the device
-            kwargs: Additional keyword arguments
-        """
-        super().__init__(prefix, name=name, **kwargs)
-        self._move_thread = None
-        self._stopped = False
-        self.readback.name = self.name
-
-    def stop(self, *, success=False) -> None:
-        """Stop any motion on the positioner
-
-        Args:
-            success (bool) : Flag to indicate if the motion was successful
-        """
-        self.move_stop.put(1)
-        self._stopped = True
-        super().stop(success=success)
-
-    def stop_scan(self) -> None:
-        """Stop the currently running scan gracefully, this finishes the running oscillation."""
-        self.scan_control.scan_stop.put(1)
-
-    @property
-    def stopped(self) -> bool:
-        """Return the status of the positioner"""
-        return self._stopped
-
-    ######### Positioner specific methods #########
-
-    @property
-    def limits(self) -> tuple:
-        """Return limits of the Bragg positioner"""
-        return (self.low_lim.get(), self.high_lim.get())
-
-    @property
-    def low_limit(self) -> float:
-        """Return low limit of axis"""
-        return self.limits[0]
-
-    @property
-    def high_limit(self) -> float:
-        """Return high limit of axis"""
-        return self.limits[1]
-
-    @property
-    def egu(self) -> str:
-        """Return the engineering units of the positioner"""
-        return "eV"
-
-    @property
-    def position(self) -> float:
-        """Return the current position of Mo1Bragg, considering the move type"""
-        return self.readback.get()
-
-    # pylint: disable=arguments-differ
-    def check_value(self, value: float) -> None:
-        """Method to check if a value is within limits of the positioner.
-        Called by PositionerBase.move()
-
-        Args:
-            value (float) : value to move axis to.
-        """
-        low_limit, high_limit = self.limits
-
-        if low_limit < high_limit and not low_limit <= value <= high_limit:
-            raise LimitError(f"position={value} not within limits {self.limits}")
-
-    def _move_and_finish(
-        self, target_pos: float, status: DeviceStatus, update_frequency: float = 0.1
-    ) -> None:
-        """
-        Method to be called in the move thread to move the Bragg positioner
-        to the target position.
-
-        Args:
-            target_pos (float)      : target position for the motion
-            move_cpt (Cpt)          : component to set the target position on the IOC,
-                                      either setpoint or setpoint_abs_angle depending
-                                      on the move type
-            read_cpt (Cpt)          : component to read the current position of the motion,
-                                      readback or feedback_pos_angle
-            status (DeviceStatus)   : status object to set the status of the motion
-            update_frequency (float): Optional, frequency to update the current position of
-                                      the motion, defaults to 0.1s
-        """
-        motor_name = None
-        try:
-            # Set the target position on IOC
-            self.setpoint.put(target_pos)
-            self.move_abs.put(1)
-            # Currently sleep is needed due to delay in updates on PVs, maybe time can be reduced
-            time.sleep(0.5)
-            motor_name = self.name
-            while self.motor_is_moving.get() == 0:
-                if self.stopped:
-                    raise Mo1BraggStoppedError(f"Device {self.name} was stopped")
-                time.sleep(update_frequency)
-            # pylint: disable=protected-access
-            status.set_finished()
-        # pylint: disable=broad-except
-        except Exception as exc:
-            content = traceback.format_exc()
-            logger.error(
-                f"Error in move thread of device {motor_name if motor_name else ''}: {content}"
-            )
-            status.set_exception(exc=exc)
-
-    def move(self, value: float, **kwargs) -> DeviceStatus:
-        """
-        Move the Bragg positioner to the specified value, allows to
-        switch between move types angle and energy.
-
-        Args:
-            value (float) : target value for the motion
-            move_type (str | MoveType) : Optional, specify the type of move,
-                                         either 'energy' or 'angle'
-
-        Returns:
-            DeviceStatus : status object to track the motion
-        """
-        self._stopped = False
-
-        self.check_value(value)
-        status = DeviceStatus(device=self)
-
-        self._move_thread = threading.Thread(
-            target=self._move_and_finish, args=(value, status, 0.1)
-        )
-        self._move_thread.start()
-        return status
-
-    # -------------- End of Positioner specific methods -----------------#
-
-    # -------------- MO1 Bragg specific methods -----------------#
-
-    def set_xtal(
-        self,
-        xtal_enum: Literal["111", "311"],
-        bragg_off_si111: float = None,
-        bragg_off_si311: float = None,
-        d_spacing_si111: float = None,
-        d_spacing_si311: float = None,
-    ) -> None:
-        """Method to set the crystal parameters of the Bragg positioner
-
-        Args:
-            xtal_enum (Literal["111", "311"]) : Enum to set the crystal orientation
-            bragg_off_si111 (float) : Offset for the 111 crystal
-            bragg_off_si311 (float) : Offset for the 311 crystal
-            d_spacing_si111 (float) : d-spacing for the 111 crystal
-            d_spacing_si311 (float) : d-spacing for the 311 crystal
-        """
-        if bragg_off_si111 is not None:
-            self.crystal.bragg_off_si111.put(bragg_off_si111)
-        if bragg_off_si311 is not None:
-            self.crystal.bragg_off_si311.put(bragg_off_si311)
-        if d_spacing_si111 is not None:
-            self.crystal.d_spacing_si111.put(d_spacing_si111)
-        if d_spacing_si311 is not None:
-            self.crystal.d_spacing_si311.put(d_spacing_si311)
-        if xtal_enum == "111":
-            crystal_set = 0
-        elif xtal_enum == "311":
-            crystal_set = 1
-        else:
-            raise ValueError(
-                f"Invalid argument for xtal_enum : {xtal_enum}, choose from '111' or '311'"
-            )
-        self.crystal.xtal_enum.put(crystal_set)
-        self.crystal.set_offset.put(1)

debye_bec/devices/mo1_bragg/mo1_bragg_enums.py

@@ -1,61 +0,0 @@
-"""Enums for the Bragg positioner and trigger generator"""
-
-import enum
-
-
-class TriggerControlSource(int, enum.Enum):
-    """Enum class for the trigger control source of the trigger generator"""
-
-    EPICS = 0
-    INPOS = 1
-
-
-class TriggerControlMode(int, enum.Enum):
-    """Enum class for the trigger control mode of the trigger generator"""
-
-    PULSE = 0
-    CONDITION = 1
-
-
-class ScanControlScanStatus(int, enum.Enum):
-    """Enum class for the scan status of the Bragg positioner"""
-
-    PARAMETER_WRONG = 0
-    VALIDATION_PENDING = 1
-    READY = 2
-    RUNNING = 3
-
-
-class ScanControlLoadMessage(int, enum.Enum):
-    """Enum for validating messages for load message of the Bragg positioner"""
-
-    PENDING = 0
-    STARTED = 1
-    SUCCESS = 2
-    ERR_TRIG_MEAS_LEN_LOW = 3
-    ERR_TRIG_N_TRIGGERS_LOW = 4
-    ERR_TRIG_TRIGS_EVERY_N_LOW = 5
-    ERR_TRIG_MEAS_LEN_HI = 6
-    ERR_TRIG_N_TRIGGERS_HI = 7
-    ERR_TRIG_TRIGS_EVERY_N_HI = 8
-    ERR_SCAN_HI_ANGLE_LIMIT = 9
-    ERR_SCAN_LOW_ANGLE_LIMITS = 10
-    ERR_SCAN_TIME = 11
-    ERR_SCAN_VEL_TOO_HI = 12
-    ERR_SCAN_ANGLE_OUT_OF_LIM = 13
-    ERR_SCAN_HIGH_VEL_LAR_42 = 14
-    ERR_SCAN_MODE_INVALID = 15
-
-
-class MoveType(str, enum.Enum):
-    """Enum class to switch between move types energy and angle for the Bragg positioner"""
-
-    ENERGY = "energy"
-    ANGLE = "angle"
-
-
-class ScanControlMode(int, enum.Enum):
-    """Enum class for the scan control mode of the Bragg positioner"""
-
-    SIMPLE = 0
-    ADVANCED = 1

debye_bec/devices/mo1_bragg/mo1_bragg_utils.py

@@ -1,93 +0,0 @@
-"""Module for additional utils of the Mo1 Bragg Positioner"""
-
-import numpy as np
-from scipy.interpolate import BSpline
-
-################ Define Constants ############
-SAFETY_FACTOR = 0.025  # safety factor to limit acceleration -> NEVER SET TO ZERO !
-N_SAMPLES = 41  # number of samples to generate -> Always choose uneven number,
-#    otherwise peak value will not be included
-DEGREE_SPLINE = 3  # DEGREE_SPLINE of spline, 3 works good
-TIME_COMPENSATE_SPLINE = 0.0062  # time to be compensated each spline in s
-POSITION_COMPONSATION = 0.02  # angle to add at both limits, must be same values
-#    as used on ACS controller for simple scans
-
-
-class Mo1UtilsSplineError(Exception):
-    """Exception for spline computation"""
-
-
-def compute_spline(
-    low_deg: float, high_deg: float, p_kink: float, e_kink_deg: float, scan_time: float
-) -> tuple[float, float, float]:
-    """Spline computation for the advanced scan mode
-
-    Args:
-        low_deg (float): Low angle value of the scan in deg
-        high_deg (float): High angle value of the scan in deg
-        scan_time (float): Time for a half oscillation in s
-        p_kink (float): Position of kink in %
-        e_kink_deg (float): Position of kink in degree
-
-    Returns:
-        tuple[float,float,float] : Position, Velocity and delta T arrays for the spline
-    """
-
-    # increase motion range slightly so that xas trigger signals will occur at defined energy limits
-    low_deg = low_deg - POSITION_COMPONSATION
-    high_deg = high_deg + POSITION_COMPONSATION
-
-    if not (0 <= p_kink <= 100):
-        raise Mo1UtilsSplineError(
-            "Kink position not within range of [0..100%]" + f"for p_kink: {p_kink}"
-        )
-
-    if not (low_deg < e_kink_deg < high_deg):
-        raise Mo1UtilsSplineError(
-            "Kink energy not within selected energy range of scan,"
-            + f"for e_kink_deg {e_kink_deg}, low_deg {low_deg} and"
-            + f"high_deg {high_deg}."
-        )
-
-    tc1 = SAFETY_FACTOR / scan_time * TIME_COMPENSATE_SPLINE
-    t_kink = (scan_time - TIME_COMPENSATE_SPLINE - 2 * (SAFETY_FACTOR - tc1)) * p_kink / 100 + (
-        SAFETY_FACTOR - tc1
-    )
-
-    t_input = [
-        0,
-        SAFETY_FACTOR - tc1,
-        t_kink,
-        scan_time - TIME_COMPENSATE_SPLINE - SAFETY_FACTOR + tc1,
-        scan_time - TIME_COMPENSATE_SPLINE,
-    ]
-    p_input = [0, 0, e_kink_deg - low_deg, high_deg - low_deg, high_deg - low_deg]
-
-    cv = np.stack((t_input, p_input)).T  # spline coefficients
-    max_param = len(cv) - DEGREE_SPLINE
-    kv = np.clip(np.arange(len(cv) + DEGREE_SPLINE + 1) - DEGREE_SPLINE, 0, max_param)  # knots
-    spl = BSpline(kv, cv, DEGREE_SPLINE)  # get spline function
-    p = spl(np.linspace(0, max_param, N_SAMPLES))
-    v = spl(np.linspace(0, max_param, N_SAMPLES), 1)
-    a = spl(np.linspace(0, max_param, N_SAMPLES), 2)
-    j = spl(np.linspace(0, max_param, N_SAMPLES), 3)
-
-    tim, pos = p.T
-    pos = pos + low_deg
-    vel = v[:, 1] / v[:, 0]
-
-    acc = []
-    for item in a:
-        acc.append(0) if item[1] == 0 else acc.append(item[1] / item[0])
-    jerk = []
-    for item in j:
-        jerk.append(0) if item[1] == 0 else jerk.append(item[1] / item[0])
-
-    dt = np.zeros(len(tim))
-    for i in np.arange(len(tim)):
-        if i == 0:
-            dt[i] = 0
-        else:
-            dt[i] = 1000 * (tim[i] - tim[i - 1])
-
-    return pos, vel, dt

debye_bec/devices/nidaq/nidaq.py

@@ -1,816 +0,0 @@
-from __future__ import annotations
-
-from typing import TYPE_CHECKING, Literal
-
-from bec_lib.logger import bec_logger
-from ophyd import Component as Cpt
-from ophyd import Device, DeviceStatus, EpicsSignal, EpicsSignalRO, Kind, StatusBase
-from ophyd.status import WaitTimeoutError
-from ophyd_devices import CompareStatus, ProgressSignal, TransitionStatus
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from ophyd_devices.sim.sim_signals import SetableSignal
-
-from debye_bec.devices.nidaq.nidaq_enums import (
-    EncoderFactors,
-    NIDAQCompression,
-    NidaqState,
-    ReadoutRange,
-    ScanRates,
-    ScanType,
-)
-
-if TYPE_CHECKING:  # pragma: no cover
-    from bec_lib.devicemanager import ScanInfo
-
-logger = bec_logger.logger
-
-
-class NidaqError(Exception):
-    """Nidaq specific error"""
-
-
-class NidaqControl(Device):
-    """Nidaq control class with all PVs"""
-
-    ### Readback PVs for EpicsEmitter ###
-    energy = Cpt(SetableSignal, value=0, kind=Kind.normal)
-
-    smpl_abs = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream sample absorption"
-    )
-    smpl_fluo = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream sample fluorescence"
-    )
-    ref_abs = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream reference absorption"
-    )
-    cisum = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter sum"
-    )
-
-    ai0_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 0, MEAN"
-    )
-    ai1_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 1, MEAN"
-    )
-    ai2_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 2, MEAN"
-    )
-    ai3_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 3, MEAN"
-    )
-    ai4_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 4, MEAN"
-    )
-    ai5_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 5, MEAN"
-    )
-    ai6_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 6, MEAN"
-    )
-    ai7_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 7, MEAN"
-    )
-
-    di0_max = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream digital input 0, MAX")
-    di1_max = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream digital input 1, MAX")
-    di2_max = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream digital input 2, MAX")
-    di3_max = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream digital input 3, MAX")
-    di4_max = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream digital input 4, MAX")
-
-    ci0_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 0, MEAN"
-    )
-    ci1_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 1, MEAN"
-    )
-    ci2_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 2, MEAN"
-    )
-    ci3_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 3, MEAN"
-    )
-    ci4_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 4, MEAN"
-    )
-    ci5_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 5, MEAN"
-    )
-    ci6_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 6, MEAN"
-    )
-    ci7_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 7, MEAN"
-    )
-    ci8_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 8, MEAN"
-    )
-    ci9_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 9, MEAN"
-    )
-    ci10_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 10, MEAN"
-    )
-    ci11_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 11, MEAN"
-    )
-    ci12_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 12, MEAN"
-    )
-    ci13_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 13, MEAN"
-    )
-    ci14_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 14, MEAN"
-    )
-    ci15_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 15, MEAN"
-    )
-    ci16_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 16, MEAN"
-    )
-    ci17_mean = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 17, MEAN"
-    )
-
-    ai0 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI0",
-        kind=Kind.normal,
-        doc="EPICS analog input 0",
-        auto_monitor=True,
-    )
-    ai1 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI1",
-        kind=Kind.normal,
-        doc="EPICS analog input 1",
-        auto_monitor=True,
-    )
-    ai2 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI2",
-        kind=Kind.normal,
-        doc="EPICS analog input 2",
-        auto_monitor=True,
-    )
-    ai3 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI3",
-        kind=Kind.normal,
-        doc="EPICS analog input 3",
-        auto_monitor=True,
-    )
-    ai4 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI4",
-        kind=Kind.normal,
-        doc="EPICS analog input 4",
-        auto_monitor=True,
-    )
-    ai5 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI5",
-        kind=Kind.normal,
-        doc="EPICS analog input 5",
-        auto_monitor=True,
-    )
-    ai6 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI6",
-        kind=Kind.normal,
-        doc="EPICS analog input 6",
-        auto_monitor=True,
-    )
-    ai7 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-AI7",
-        kind=Kind.normal,
-        doc="EPICS analog input 7",
-        auto_monitor=True,
-    )
-
-    ci0 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI0",
-        kind=Kind.normal,
-        doc="EPICS counter input 0",
-        auto_monitor=True,
-    )
-    ci1 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI1",
-        kind=Kind.normal,
-        doc="EPICS counter input 1",
-        auto_monitor=True,
-    )
-    ci2 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI2",
-        kind=Kind.normal,
-        doc="EPICS counter input 2",
-        auto_monitor=True,
-    )
-    ci3 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI3",
-        kind=Kind.normal,
-        doc="EPICS counter input 3",
-        auto_monitor=True,
-    )
-    ci4 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI4",
-        kind=Kind.normal,
-        doc="EPICS counter input 4",
-        auto_monitor=True,
-    )
-    ci5 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI5",
-        kind=Kind.normal,
-        doc="EPICS counter input 5",
-        auto_monitor=True,
-    )
-    ci6 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI6",
-        kind=Kind.normal,
-        doc="EPICS counter input 6",
-        auto_monitor=True,
-    )
-    ci7 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI7",
-        kind=Kind.normal,
-        doc="EPICS counter input 7",
-        auto_monitor=True,
-    )
-    ci8 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI8",
-        kind=Kind.normal,
-        doc="EPICS counter input 8",
-        auto_monitor=True,
-    )
-    ci9 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI9",
-        kind=Kind.normal,
-        doc="EPICS counter input 9",
-        auto_monitor=True,
-    )
-    ci10 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI10",
-        kind=Kind.normal,
-        doc="EPICS counter input 0",
-        auto_monitor=True,
-    )
-    ci11 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI11",
-        kind=Kind.normal,
-        doc="EPICS counter input 1",
-        auto_monitor=True,
-    )
-    ci12 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI12",
-        kind=Kind.normal,
-        doc="EPICS counter input 2",
-        auto_monitor=True,
-    )
-    ci13 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI13",
-        kind=Kind.normal,
-        doc="EPICS counter input 3",
-        auto_monitor=True,
-    )
-    ci14 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI14",
-        kind=Kind.normal,
-        doc="EPICS counter input 4",
-        auto_monitor=True,
-    )
-    ci15 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI15",
-        kind=Kind.normal,
-        doc="EPICS counter input 5",
-        auto_monitor=True,
-    )
-    ci16 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI16",
-        kind=Kind.normal,
-        doc="EPICS counter input 6",
-        auto_monitor=True,
-    )
-    ci17 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-CI17",
-        kind=Kind.normal,
-        doc="EPICS counter input 7",
-        auto_monitor=True,
-    )
-
-    di0 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-DI0",
-        kind=Kind.normal,
-        doc="EPICS digital input 0",
-        auto_monitor=True,
-    )
-    di1 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-DI1",
-        kind=Kind.normal,
-        doc="EPICS digital input 1",
-        auto_monitor=True,
-    )
-    di2 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-DI2",
-        kind=Kind.normal,
-        doc="EPICS digital input 2",
-        auto_monitor=True,
-    )
-    di3 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-DI3",
-        kind=Kind.normal,
-        doc="EPICS digital input 3",
-        auto_monitor=True,
-    )
-    di4 = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-DI4",
-        kind=Kind.normal,
-        doc="EPICS digital input 4",
-        auto_monitor=True,
-    )
-
-    enc_epics = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-ENC",
-        kind=Kind.normal,
-        doc="EPICS Encoder reading",
-        auto_monitor=True,
-    )
-
-    energy_epics = Cpt(
-        EpicsSignalRO,
-        suffix="NIDAQ-ENERGY",
-        kind=Kind.normal,
-        doc="EPICS Energy reading",
-        auto_monitor=True,
-    )
-
-    ### Readback for BEC emitter ###
-    ai0_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 0, STD"
-    )
-    ai1_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 1, STD"
-    )
-    ai2_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 2, STD"
-    )
-    ai3_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 3, STD"
-    )
-    ai4_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 4, STD"
-    )
-    ai5_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 5, STD"
-    )
-    ai6_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 6, STD"
-    )
-    ai7_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream analog input 7, STD"
-    )
-
-    ci0_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 0. STD"
-    )
-    ci1_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 1. STD"
-    )
-    ci2_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 2. STD"
-    )
-    ci3_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 3. STD"
-    )
-    ci4_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 4. STD"
-    )
-    ci5_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 5. STD"
-    )
-    ci6_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 6. STD"
-    )
-    ci7_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 7. STD"
-    )
-    ci8_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 8. STD"
-    )
-    ci9_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 9. STD"
-    )
-    ci10_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 10. STD"
-    )
-    ci11_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 11. STD"
-    )
-    ci12_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 12. STD"
-    )
-    ci13_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 13. STD"
-    )
-    ci14_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 14. STD"
-    )
-    ci15_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 15. STD"
-    )
-    ci16_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 16. STD"
-    )
-    ci17_std_dev = Cpt(
-        SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream counter input 17. STD"
-    )
-
-    xas_timestamp = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream XAS timestamp")
-    xrd_timestamp = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream XRD timestamp")
-    xrd_angle = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream XRD angle")
-    xrd_energy = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream XRD energy")
-    xrd_ai0_mean = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream XRD ai0 mean")
-    xrd_ai0_std_dev = Cpt(SetableSignal, value=0, kind=Kind.normal, doc="NIDAQ stream XRD ai0 std dev")
-
-    enc = Cpt(SetableSignal, value=0, kind=Kind.normal)
-    rle = Cpt(SetableSignal, value=0, kind=Kind.normal)
-
-    ### Control PVs ###
-
-    enable_compression = Cpt(EpicsSignal, suffix="NIDAQ-EnableRLE", kind=Kind.config, auto_monitor=True)
-    enable_dead_time_correction = Cpt(EpicsSignal, suffix="NIDAQ-EnableDTC", kind=Kind.config, auto_monitor=True)
-    kickoff_call = Cpt(EpicsSignal, suffix="NIDAQ-Kickoff", kind=Kind.config)
-    stage_call = Cpt(EpicsSignal, suffix="NIDAQ-Stage", kind=Kind.config)
-    state = Cpt(EpicsSignal, suffix="NIDAQ-FSMState", kind=Kind.config, auto_monitor=True)
-    server_status = Cpt(EpicsSignalRO, suffix="NIDAQ-ServerStatus", kind=Kind.config)
-    compression_ratio = Cpt(EpicsSignalRO, suffix="NIDAQ-CompressionRatio", kind=Kind.config)
-    scan_type = Cpt(EpicsSignal, suffix="NIDAQ-ScanType", kind=Kind.config)
-    scan_type_string = Cpt(EpicsSignal, suffix="NIDAQ-ScanType", kind=Kind.config, string=True)
-    sampling_rate = Cpt(EpicsSignal, suffix="NIDAQ-SamplingRateRequested", kind=Kind.config, auto_monitor=True)
-    sampling_rate_string = Cpt(EpicsSignal, suffix="NIDAQ-SamplingRateRequested", kind=Kind.config, string=True, auto_monitor=True)
-    scan_duration = Cpt(EpicsSignal, suffix="NIDAQ-SamplingDuration", kind=Kind.config)
-    readout_range = Cpt(EpicsSignal, suffix="NIDAQ-ReadoutRange", kind=Kind.config, auto_monitor=True)
-    readout_range_string = Cpt(EpicsSignal, suffix="NIDAQ-ReadoutRange", kind=Kind.config, string=True, auto_monitor=True)
-    encoder_factor = Cpt(EpicsSignal, suffix="NIDAQ-EncoderFactor", kind=Kind.config, auto_monitor=True)
-    encoder_factor_string = Cpt(EpicsSignal, suffix="NIDAQ-EncoderFactor", kind=Kind.config, string=True, auto_monitor=True)
-    stop_call = Cpt(EpicsSignal, suffix="NIDAQ-Stop", kind=Kind.config)
-    power = Cpt(EpicsSignal, suffix="NIDAQ-Power", kind=Kind.config)
-    heartbeat = Cpt(EpicsSignal, suffix="NIDAQ-Heartbeat", kind=Kind.config, auto_monitor=True)
-    time_left = Cpt(EpicsSignalRO, suffix="NIDAQ-TimeLeft", kind=Kind.config, auto_monitor=True)
-
-    ai_chans = Cpt(EpicsSignal, suffix="NIDAQ-AIChans", kind=Kind.config, auto_monitor=True)
-    ci_chans = Cpt(EpicsSignal, suffix="NIDAQ-CIChans", kind=Kind.config, auto_monitor=True)
-    di_chans = Cpt(EpicsSignal, suffix="NIDAQ-DIChans", kind=Kind.config, auto_monitor=True)
-    add_chans = Cpt(EpicsSignal, suffix="NIDAQ-AddChans", kind=Kind.config, auto_monitor=True)
-
-    smpl_abs_ln = Cpt(EpicsSignal, suffix="NIDAQ-smpl_abs_ln", kind=Kind.config, auto_monitor=True)
-    ref_abs_ln = Cpt(EpicsSignal, suffix="NIDAQ-ref_abs_ln", kind=Kind.config, auto_monitor=True)
-
-    smpl_abs_no = Cpt(EpicsSignal, suffix="NIDAQ-smpl_abs_no", kind=Kind.config, auto_monitor=True)
-    smpl_abs_no_string = Cpt(EpicsSignal, suffix="NIDAQ-smpl_abs_no", kind=Kind.config, string=True, auto_monitor=True)
-
-    smpl_abs_de = Cpt(EpicsSignal, suffix="NIDAQ-smpl_abs_de", kind=Kind.config, auto_monitor=True)
-    smpl_abs_de_string = Cpt(EpicsSignal, suffix="NIDAQ-smpl_abs_de", kind=Kind.config, string=True, auto_monitor=True)
-
-    smpl_fluo_no = Cpt(EpicsSignal, suffix="NIDAQ-smpl_fluo_no", kind=Kind.config, auto_monitor=True)
-    smpl_fluo_no_string = Cpt(EpicsSignal, suffix="NIDAQ-smpl_fluo_no", kind=Kind.config, string=True, auto_monitor=True)
-
-    smpl_fluo_de = Cpt(EpicsSignal, suffix="NIDAQ-smpl_fluo_de", kind=Kind.config, auto_monitor=True)
-    smpl_fluo_de_string = Cpt(EpicsSignal, suffix="NIDAQ-smpl_fluo_de", kind=Kind.config, string=True, auto_monitor=True)
-
-    ref_abs_no = Cpt(EpicsSignal, suffix="NIDAQ-ref_abs_no", kind=Kind.config, auto_monitor=True)
-    ref_abs_no_string = Cpt(EpicsSignal, suffix="NIDAQ-ref_abs_no", kind=Kind.config, string=True, auto_monitor=True)
-
-    ref_abs_de = Cpt(EpicsSignal, suffix="NIDAQ-ref_abs_de", kind=Kind.config, auto_monitor=True)
-    ref_abs_de_string = Cpt(EpicsSignal, suffix="NIDAQ-ref_abs_de", kind=Kind.config, string=True, auto_monitor=True)
-
-
-class Nidaq(PSIDeviceBase, NidaqControl):
-    """NIDAQ ophyd wrapper around the NIDAQ backend currently running at x01da-cons-05
-
-    Args:
-        prefix (str)    : Prefix to the NIDAQ soft ioc, currently X01DA-PC-SCANSERVER:
-        name (str)      : Name of the device
-        scan_info (ScanInfo) : ScanInfo object passed by BEC's devicemanager.
-    """
-
-    progress_signal = Cpt(ProgressSignal, name="progress_signal")
-
-    USER_ACCESS = ["set_config"]
-
-    def __init__(self, prefix: str = "", *, name: str, scan_info: ScanInfo = None, **kwargs):
-        super().__init__(name=name, prefix=prefix, scan_info=scan_info, **kwargs)
-        self.scan_info: ScanInfo
-        self.timeout_wait_for_signal = 5  # put 5s firsts
-        self._timeout_wait_for_pv = 5  # 5s timeout for pv calls. editted due to timeout issues persisting 
-        self.valid_scan_names = [
-            "xas_simple_scan",
-            "xas_simple_scan_with_xrd",
-            "xas_advanced_scan",
-            "xas_advanced_scan_with_xrd",
-            "nidaq_continuous_scan",
-        ]
-
-    ########################################
-    #           Beamline Methods           #
-    ########################################
-
-    def _check_if_scan_name_is_valid(self) -> bool:
-        """Check if the scan is within the list of scans for which the backend is working"""
-        scan_name = self.scan_info.msg.scan_name
-        if scan_name in self.valid_scan_names:
-            return True
-        return False
-
-    def set_config(
-        self,
-        sampling_rate: Literal[
-            100000, 500000, 1000000, 2000000, 4000000, 5000000, 10000000, 14286000
-        ],
-        ai: list,
-        ci: list,
-        di: list,
-        scan_type: Literal["continuous", "triggered"] = "triggered",
-        scan_duration: float = 0,
-        readout_range: Literal[1, 2, 5, 10] = 10,
-        encoder_type: Literal["X_1", "X_2", "X_4"] = "X_4",
-        enable_compression: bool = True,
-    ) -> None:
-        """Method to configure the NIDAQ
-
-        Args:
-            sampling_rate(Literal[100000, 500000, 1000000, 2000000, 4000000, 5000000,
-              10000000, 14286000]): Sampling rate in Hz
-            ai(list): List of analog input channel numbers to add, i.e. [0, 1, 2] for
-              input 0, 1 and 2
-            ci(list): List of counter input channel numbers to add, i.e. [0, 1, 2] for
-              input 0, 1 and 2
-            di(list): List of digital input channel numbers to add, i.e. [0, 1, 2] for
-              input 0, 1 and 2
-            scan_type(Literal['continuous', 'triggered']): Triggered to use with monochromator,
-              otherwise continuous, default 'triggered'
-            scan_duration(float): Scan duration in seconds, use 0 for infinite scan, default 0
-            readout_range(Literal[1, 2, 5, 10]): Readout range in +- Volts, default +-10V
-            encoder_type(Literal['X_1', 'X_2', 'X_4']): Encoder readout type, default 'X_4'
-            enable_compression(bool): Enable or disable compression of data, default True
-
-        """
-        if sampling_rate == 100000:
-            self.sampling_rate.put(ScanRates.HUNDRED_KHZ)
-        elif sampling_rate == 500000:
-            self.sampling_rate.put(ScanRates.FIVE_HUNDRED_KHZ)
-        elif sampling_rate == 1000000:
-            self.sampling_rate.put(ScanRates.ONE_MHZ)
-        elif sampling_rate == 2000000:
-            self.sampling_rate.put(ScanRates.TWO_MHZ)
-        elif sampling_rate == 4000000:
-            self.sampling_rate.put(ScanRates.FOUR_MHZ)
-        elif sampling_rate == 5000000:
-            self.sampling_rate.put(ScanRates.FIVE_MHZ)
-        elif sampling_rate == 10000000:
-            self.sampling_rate.put(ScanRates.TEN_MHZ)
-        elif sampling_rate == 14286000:
-            self.sampling_rate.put(ScanRates.FOURTEEN_THREE_MHZ)
-
-        ai_chans = 0
-        if isinstance(ai, list):
-            for ch in ai:
-                if isinstance(ch, int):
-                    if ch >= 0 and ch <= 7:
-                        ai_chans = ai_chans | (1 << ch)
-        self.ai_chans.put(ai_chans)
-
-        ci_chans = 0
-        if isinstance(ci, list):
-            for ch in ci:
-                if isinstance(ch, int):
-                    if ch >= 0 and ch <= 7:
-                        ci_chans = ci_chans | (1 << ch)
-        self.ci_chans.put(ci_chans)
-
-        di_chans = 0
-        if isinstance(di, list):
-            for ch in di:
-                if isinstance(ch, int):
-                    if ch >= 0 and ch <= 4:
-                        di_chans = di_chans | (1 << ch)
-        self.di_chans.put(di_chans)
-
-        if scan_type in "continuous":
-            self.scan_type.put(ScanType.CONTINUOUS)
-        elif scan_type in "triggered":
-            self.scan_type.put(ScanType.TRIGGERED)
-
-        if scan_duration >= 0:
-            self.scan_duration.put(scan_duration)
-
-        if readout_range == 1:
-            self.readout_range.put(ReadoutRange.ONE_V)
-        elif readout_range == 2:
-            self.readout_range.put(ReadoutRange.TWO_V)
-        elif readout_range == 5:
-            self.readout_range.put(ReadoutRange.FIVE_V)
-        elif readout_range == 10:
-            self.readout_range.put(ReadoutRange.TEN_V)
-
-        if encoder_type in "1/16":
-            self.encoder_factor.put(EncoderFactors.X1_16)
-        elif encoder_type in "1/8":
-            self.encoder_factor.put(EncoderFactors.X1_8)
-        elif encoder_type in "1/4":
-            self.encoder_factor.put(EncoderFactors.X1_4)
-        elif encoder_type in "1/2":
-            self.encoder_factor.put(EncoderFactors.X1_2)
-        elif encoder_type in "1":
-            self.encoder_factor.put(EncoderFactors.X1)
-        elif encoder_type in "2":
-            self.encoder_factor.put(EncoderFactors.X2)
-        elif encoder_type in "4":
-            self.encoder_factor.put(EncoderFactors.X4)
-
-        if enable_compression is True:
-            self.enable_compression.put(NIDAQCompression.ON)
-        elif enable_compression is False:
-            self.enable_compression.put(NIDAQCompression.OFF)
-
-    ########################################
-    #  Beamline Specific Implementations   #
-    ########################################
-
-    def on_init(self) -> None:
-        """
-        Called when the device is initialized.
-
-        No signals are connected at this point. If you like to
-        set default values on signals, please use on_connected instead.
-        """
-
-    def on_connected(self) -> None:
-        """
-        Called after the device is connected and its signals are connected.
-        Default values for signals should be set here.
-        """
-        status = TransitionStatus(self.heartbeat, transitions=[0, 1], strict=False)
-        self.cancel_on_stop(status)
-        try:
-            status.wait(timeout=self.timeout_wait_for_signal)  # Raises if timeout is reached
-        except WaitTimeoutError:
-            logger.warning(f"Device {self.name} was not alive, trying to put power on")
-            status = TransitionStatus(self.heartbeat, transitions=[0, 1], strict=False)
-            self.cancel_on_stop(status)
-            self.power.put(1)
-
-        status.wait(timeout=self.timeout_wait_for_signal)
-
-        status = CompareStatus(self.state, NidaqState.STANDBY)
-        self.cancel_on_stop(status)
-        status.wait(timeout=self.timeout_wait_for_signal)
-        self.scan_duration.set(0).wait(timeout=self._timeout_wait_for_pv)
-        self.time_left.subscribe(self._progress_update, run=False)
-
-    def on_stage(self) -> DeviceStatus | StatusBase | None:
-        """
-        Called while staging the device.
-
-        Information about the upcoming scan can be accessed from the scan_info (self.scan_info.msg) object.
-        If the upcoming scan is not in the list of valid scans, return immediately.
-        """
-        if not self._check_if_scan_name_is_valid():
-            return None
-
-        if self.state.get() != NidaqState.STANDBY:
-            status = CompareStatus(self.state, NidaqState.STANDBY)
-            self.cancel_on_stop(status)
-            self.on_stop()
-            status.wait(timeout=self.timeout_wait_for_signal)
-
-        # If scan is not part of the valid_scan_names,
-        if self.scan_info.msg.scan_name != "nidaq_continuous_scan":
-            self.scan_type.set(ScanType.TRIGGERED).wait(timeout=self._timeout_wait_for_pv)
-            self.scan_duration.set(0).wait(timeout=self._timeout_wait_for_pv)
-            self.enable_compression.set(1).wait(timeout=self._timeout_wait_for_pv)
-        else:
-            self.scan_type.set(ScanType.CONTINUOUS).wait(timeout=self._timeout_wait_for_pv)
-            self.scan_duration.set(self.scan_info.msg.scan_parameters["scan_duration"]).wait(
-                timeout=self._timeout_wait_for_pv
-            )
-            self.enable_compression.set(self.scan_info.msg.scan_parameters["compression"]).wait(
-                timeout=self._timeout_wait_for_pv
-            )
-
-        # Stage call to IOC
-        status = CompareStatus(self.state, NidaqState.STAGE)
-        self.cancel_on_stop(status)
-        # TODO 11.11.25/HS64
-        # Switched from set to put in the hope to get rid of the rare event where nidaq is stopped at the start of a scan
-        # Problems consistently persisting, testing changing back to set, unconvinced this is the actual cause 14.11.25/AHC
-        # self.stage_call.set(1).wait(timeout=self._timeout_wait_for_pv)
-        self.stage_call.put(1)
-        status.wait(timeout=self.timeout_wait_for_signal)
-        if self.scan_info.msg.scan_name != "nidaq_continuous_scan":
-            status = self.on_kickoff()
-            self.cancel_on_stop(status)
-            status.wait(timeout=self._timeout_wait_for_pv)
-        logger.info(f"Device {self.name} was staged: {NidaqState(self.state.get())}")
-
-    def on_kickoff(self) -> DeviceStatus | StatusBase:
-        """Kickoff the Nidaq"""
-        status = self.kickoff_call.set(1)
-        self.cancel_on_stop(status)
-        return status
-
-    def on_unstage(self) -> DeviceStatus | StatusBase | None:
-        """Called while unstaging the device. Check that the Nidaq goes into Standby"""
-
-        status = CompareStatus(self.state, NidaqState.STANDBY)
-        self.cancel_on_stop(status)
-        status.wait(timeout=self.timeout_wait_for_signal)
-        status = self.enable_compression.set(1)
-        self.cancel_on_stop(status)
-        status.wait(self._timeout_wait_for_pv)
-        logger.info(f"Device {self.name} was unstaged: {NidaqState(self.state.get())}")
-
-    def on_pre_scan(self) -> DeviceStatus | StatusBase | None:
-        """
-        Called right before the scan starts on all devices automatically.
-
-        Here we ensure that the NIDAQ master task is running
-        before the motor starts its oscillation. This is needed for being properly homed.
-        The NIDAQ should go into Acquiring mode.
-        """
-        if not self._check_if_scan_name_is_valid():
-            return None
-
-        if self.scan_info.msg.scan_name == "nidaq_continuous_scan":
-            logger.info(f"Device {self.name} ready to be kicked off for nidaq_continuous_scan")
-            return None
-
-        status = CompareStatus(self.state, NidaqState.KICKOFF)
-        self.cancel_on_stop(status)
-        status.wait(timeout=self._timeout_wait_for_pv)
-        logger.info(
-            f"Device {self.name} ready to take data after pre_scan: {NidaqState(self.state.get())}"
-        )
-
-    def on_trigger(self) -> DeviceStatus | StatusBase | None:
-        """Called when the device is triggered."""
-
-    def on_complete(self) -> DeviceStatus | StatusBase | None:
-        """
-        Called to inquire if a device has completed a scans.
-
-        For the NIDAQ we use this method to stop the backend since it
-        would not stop by itself in its current implementation since the number of points are not predefined.
-        """
-        if not self._check_if_scan_name_is_valid():
-            return None
-
-        status = CompareStatus(self.state, NidaqState.STANDBY)
-        self.cancel_on_stop(status)
-        if self.scan_info.msg.scan_name != "nidaq_continuous_scan":
-            self.on_stop()
-        return status
-
-    def _progress_update(self, value, **kwargs) -> None:
-        """Callback method to update the scan progress, runs a callback
-        to SUB_PROGRESS subscribers, i.e. BEC.
-
-        Args:
-            value (int) : current progress value
-        """
-        scan_duration = self.scan_info.msg.scan_parameters.get("scan_duration", None)
-        if not isinstance(scan_duration, (int, float)):
-            return
-        value = scan_duration - value
-        max_value = scan_duration
-        self.progress_signal.put(value=value, max_value=max_value, done=bool(max_value == value))
-
-    def on_stop(self) -> None:
-        """Called when the device is stopped."""
-        self.stop_call.put(1)

debye_bec/devices/nidaq/nidaq_enums.py

@@ -1,60 +0,0 @@
-import enum
-
-
-class NIDAQCompression(str, enum.Enum):
-    """Options for Compression"""
-
-    OFF = 0
-    ON = 1
-
-
-class ScanType(int, enum.Enum):
-    """Triggering options of the backend"""
-
-    TRIGGERED = 0
-    CONTINUOUS = 1
-
-
-class NidaqState(int, enum.Enum):
-    """Possible States of the NIDAQ backend"""
-
-    DISABLED = 0
-    STANDBY = 1
-    STAGE = 2
-    KICKOFF = 3
-    ACQUIRE = 4
-    UNSTAGE = 5
-
-
-class ScanRates(int, enum.Enum):
-    """Sampling Rate options for the backend, in kHZ and MHz"""
-
-    HUNDRED_KHZ = 0
-    FIVE_HUNDRED_KHZ = 1
-    ONE_MHZ = 2
-    TWO_MHZ = 3
-    FOUR_MHZ = 4
-    FIVE_MHZ = 5
-    TEN_MHZ = 6
-    FOURTEEN_THREE_MHZ = 7
-
-
-class ReadoutRange(int, enum.Enum):
-    """ReadoutRange in +-V"""
-
-    ONE_V = 0
-    TWO_V = 1
-    FIVE_V = 2
-    TEN_V = 3
-
-
-class EncoderFactors(int, enum.Enum):
-    """Encoder Factors"""
-
-    X1_16 = 0
-    X1_8 = 1
-    X1_4 = 2
-    X1_2 = 3
-    X1 = 4
-    X2 = 5
-    X4 = 6

debye_bec/devices/pilatus/pilatus.py

@@ -1,685 +0,0 @@
-"""Pilatus AD integration at Debye beamline."""
-
-from __future__ import annotations
-
-import enum
-import threading
-import time
-import traceback
-from typing import TYPE_CHECKING, Tuple
-
-import numpy as np
-from bec_lib.file_utils import get_full_path
-from bec_lib.logger import bec_logger
-from ophyd import Component as Cpt
-from ophyd import EpicsSignal, EpicsSignalRO, Kind
-from ophyd.areadetector.cam import ADBase, PilatusDetectorCam
-from ophyd.areadetector.plugins import HDF5Plugin_V22 as HDF5Plugin
-from ophyd.areadetector.plugins import ImagePlugin_V22 as ImagePlugin
-from ophyd.status import WaitTimeoutError
-from ophyd_devices import AndStatus, CompareStatus, DeviceStatus, FileEventSignal, PreviewSignal
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from pydantic import BaseModel, Field
-
-if TYPE_CHECKING:  # pragma: no cover
-    from bec_lib.devicemanager import ScanInfo
-    from bec_lib.messages import DevicePreviewMessage, ScanStatusMessage
-    from bec_server.device_server.device_server import DeviceManagerDS
-
-PILATUS_READOUT_TIME = 0.1  # in s
-# PILATUS_ACQUIRE_TIME = (
-#     999999  # This time is the timeout of the detector in operation mode, so it needs to be large.
-# )
-
-# pylint: disable=redefined-outer-name
-# pylint: disable=raise-missing-from
-
-logger = bec_logger.logger
-
-
-class DETECTORSTATE(int, enum.Enum):
-    """Pilatus Detector States from CamServer"""
-
-    UNARMED = 0
-    ARMED = 1
-
-
-class ACQUIREMODE(int, enum.Enum):
-    """Pilatus Acquisition Modes"""
-
-    DONE = 0
-    ACQUIRING = 1
-
-
-class FILEWRITEMODE(int, enum.Enum):
-    """HDF5 Plugin FileWrite Mode"""
-
-    SINGLE = 0
-    CAPTURE = 1
-    STREAM = 2
-
-
-class COMPRESSIONALGORITHM(int, enum.Enum):
-    """HDF5 Plugin Compression Algorithm"""
-
-    NONE = 0
-    NBIT = 1  # Don't use that..
-    SZIP = 2
-    ZLIB = 3
-
-
-class TRIGGERMODE(int, enum.Enum):
-    """Pilatus Trigger Modes"""
-
-    INTERNAL = 0
-    EXT_ENABLE = 1
-    EXT_TRIGGER = 2
-    MULT_TRIGGER = 3
-    ALIGNMENT = 4
-
-
-class MONOTRIGGERSOURCE(int, enum.Enum):
-    """ "Mono XRD trigger source"""
-
-    EPICS = 0
-    INPOS = 1
-
-
-class MONOTRIGGERMODE(int, enum.Enum):
-    """ "Mono XRD trigger mode"""
-
-    PULSE = 0
-    CONDITION = 1
-
-    def description(self) -> str:
-        """Return a description of the trigger mode."""
-        descriptions = {
-            TRIGGERMODE.INTERNAL: "Internal trigger mode, images are acquired on internal trigger.",
-            TRIGGERMODE.EXT_ENABLE: "External Enable trigger mode; check manual as details are currently unknown",
-            TRIGGERMODE.EXT_TRIGGER: "External Trigger mode, images are acquired on external trigger signal. All images on single trigger.",
-            TRIGGERMODE.MULT_TRIGGER: "Multiple External Trigger mode, images are acquired on multiple external trigger signals. One image per trigger.",
-            TRIGGERMODE.ALIGNMENT: "Alignment mode, used for beam alignment.",
-        }
-        return descriptions.get(self, "Unknown")
-
-    def __str__(self):
-        return self.description()
-
-
-class ScanParameter(BaseModel):
-    """Dataclass to store the scan parameters for the Pilatus.
-    This needs to be in sync with the kwargs of the XRD related scans from Debye, to
-    ensure that the scan parameters are correctly set. Any changes in the scan kwargs,
-    i.e. renaming or adding new parameters, need to be represented here as well."""
-
-    scan_time: float | None = Field(None, description="Scan time for a half oscillation")
-    scan_duration: float | None = Field(None, description="Duration of the scan")
-    break_enable_low: bool | None = Field(
-        None, description="Break enabled for low, should be PV trig_ena_lo_enum"
-    )  # trig_enable_low: bool = None
-    break_enable_high: bool | None = Field(
-        None, description="Break enabled for high, should be PV trig_ena_hi_enum"
-    )  # trig_enable_high: bool = None
-    break_time_low: float | None = Field(None, description="Break time low energy/angle")
-    break_time_high: float | None = Field(None, description="Break time high energy/angle")
-    cycle_low: int | None = Field(None, description="Cycle for low energy/angle")
-    cycle_high: int | None = Field(None, description="Cycle for high energy/angle")
-    exp_time: float | None = Field(None, description="XRD trigger period")
-    n_of_trigger: int | None = Field(None, description="Amount of XRD triggers")
-    start: float | None = Field(None, description="Start value for energy/angle")
-    stop: float | None = Field(None, description="Stop value for energy/angle")
-    model_config: dict = {"validate_assignment": True}
-
-
-class Pilatus(PSIDeviceBase, ADBase):
-    """
-    Pilatus Base integration for Debye.
-    Prefix of the detector is 'X01DA-ES2-PIL:'
-
-    Args:
-        prefix (str) : Prefix for the IOC
-        name (str) : Name of the detector
-        scan_info (ScanInfo | None) : ScanInfo object passed through the device by the device_manager
-        device_manager (DeviceManager | None) : DeviceManager object passed through the device by the device_manager
-    """
-
-    # USER_ACCESS = ["start_live_mode", "stop_live_mode"]
-
-    cam_gain_menu_string = Cpt(EpicsSignalRO, suffix='cam1:GainMenu', string=True)
-
-    _default_configuration_attrs = [
-        'cam.threshold_energy',
-        'cam.threshold_auto_apply',
-        'cam.gain_menu',
-        'cam_gain_menu_string',
-        'cam.pixel_cut_off',
-        'cam.acquire_time',
-        'cam.num_exposures',
-        'cam.model',
-    ]
-
-    cam = Cpt(PilatusDetectorCam, "cam1:")
-    hdf = Cpt(HDF5Plugin, "HDF1:")
-    image1 = Cpt(ImagePlugin, "image1:")
-    filter_number = Cpt(
-        EpicsSignal, "cam1:FileNumber", kind=Kind.omitted, doc="File number for ramdisk"
-    )
-    trigger_shot = Cpt(
-        EpicsSignal,
-        read_pv="X01DA-OP-MO1:BRAGG:xrd_trig_req",
-        write_pv="X01DA-OP-MO1:BRAGG:xrd_trig_req",
-        add_prefix=("a",),
-        kind=Kind.omitted,
-        doc="Trigger PV from MO1 Bragg",
-    )
-    trigger_source = Cpt(
-        EpicsSignal,
-        read_pv="X01DA-OP-MO1:BRAGG:xrd_trig_src_ENUM_RBV",
-        write_pv="X01DA-OP-MO1:BRAGG:xrd_trig_src_ENUM",
-        add_prefix=("a",),
-        kind=Kind.omitted,
-        doc="Trigger Source; PV, 0 : EPICS, 1 : INPOS",
-    )
-    trigger_mode = Cpt(
-        EpicsSignal,
-        read_pv="X01DA-OP-MO1:BRAGG:xrd_trig_mode_ENUM_RBV",
-        write_pv="X01DA-OP-MO1:BRAGG:xrd_trig_mode_ENUM",
-        add_prefix=("a",),
-        kind=Kind.omitted,
-        doc="Trigger Mode; 0 : PULSE, 1 : CONDITION",
-    )
-    trigger_pulse_length = Cpt(
-        EpicsSignal,
-        read_pv="X01DA-OP-MO1:BRAGG:xrd_trig_len_RBV",
-        write_pv="X01DA-OP-MO1:BRAGG:xrd_trig_len",
-        add_prefix=("a",),
-        kind=Kind.omitted,
-        doc="Trigger Period in seconds",
-    )
-    trigger_period = Cpt(
-        EpicsSignal,
-        read_pv="X01DA-OP-MO1:BRAGG:xrd_trig_period_RBV",
-        write_pv="X01DA-OP-MO1:BRAGG:xrd_trig_period",
-        add_prefix=("a",),
-        kind=Kind.omitted,
-        doc="Trigger Pulse Length in seconds",
-    )
-    trigger_n_of = Cpt(
-        EpicsSignal,
-        read_pv="X01DA-OP-MO1:BRAGG:xrd_n_of_trig_RBV",
-        write_pv="X01DA-OP-MO1:BRAGG:xrd_n_of_trig",
-        add_prefix=("a",),
-        kind=Kind.omitted,
-        doc="Number of trigger to generate for each request",
-    )
-    preview = Cpt(
-        PreviewSignal,
-        name="preview",
-        ndim=2,
-        num_rotation_90=3,
-        doc="Preview signal for the Pilatus Detector",
-    )
-    file_event = Cpt(FileEventSignal, name="file_event")
-
-    def __init__(
-        self,
-        *,
-        name: str,
-        prefix: str = "",
-        scan_info: ScanInfo | None = None,
-        device_manager: DeviceManagerDS | None = None,
-        **kwargs,
-    ):
-        super().__init__(
-            name=name, prefix=prefix, scan_info=scan_info, device_manager=device_manager, **kwargs
-        )
-        self.scan_parameter = ScanParameter()
-        self.device_manager = device_manager
-        self._readout_time = PILATUS_READOUT_TIME
-        self._full_path = ""
-        self._poll_thread = threading.Thread(
-            target=self._poll_array_data, daemon=True, name=f"{self.name}_poll_thread"
-        )
-        self._poll_thread_kill_event = threading.Event()
-        self._poll_rate = 1  # Poll rate in Hz
-        self.xas_xrd_scan_names = ["xas_simple_scan_with_xrd", "xas_advanced_scan_with_xrd"]
-        self.n_images = None
-        # self._live_mode_thread = threading.Thread(
-        #     target=self._live_mode_loop, daemon=True, name=f"{self.name}_live_mode_thread"
-        # )
-        # self._live_mode_kill_event = threading.Event()
-        # self._live_mode_run_event = threading.Event()
-        # self._live_mode_stopped_event = threading.Event()
-        # self._live_mode_stopped_event.set()  # Initial state is stopped
-
-    ########################################
-    #        Custom Beamline Methods       #
-    ########################################
-
-    def _poll_array_data(self):
-        """Poll the array data for preview updates."""
-        while not self._poll_thread_kill_event.wait(1 / self._poll_rate):
-            try:
-                # logger.info(f"Running poll loop for {self.name}..")
-                value = self.image1.array_data.get()
-                if value is None:
-                    continue
-                width = self.image1.array_size.width.get()
-                height = self.image1.array_size.height.get()
-                # Geometry correction for the image
-                data = np.reshape(value, (height, width))
-                last_image: DevicePreviewMessage = self.preview.get()
-                # logger.info(f"Preview image for {self.name} has shape {data.shape}")
-                if last_image is not None:
-                    if np.array_equal(data, last_image.data):
-                        # No update if image is the same, ~2.5ms on 2400x2400 image (6M)
-                        logger.debug(
-                            f"Pilatus preview image for {self.name} is the same as last one, not updating."
-                        )
-                        continue
-
-                logger.debug(f"Setting preview data for {self.name}")
-                self.preview.put(data)
-            except Exception:  # pylint: disable=broad-except
-                content = traceback.format_exc()
-                logger.error(
-                    f"Error while polling array data for preview of {self.name}: {content}"
-                )
-
-    # def start_live_mode(self, exp_time: float, n_images_max: int = 50000):
-    #     """
-    #     Start live mode with given exposure time.
-
-    #     Args:
-    #         exp_time (float) : Exposure time in seconds
-    #         n_images_max (int): Maximum number of images to capture during live mode.
-    #                             Default is 5000. Only reset if needed.
-    #     """
-    #     if (
-    #         self.cam.acquire.get() != ACQUIREMODE.DONE.value
-    #         or self.hdf.capture.get() != ACQUIREMODE.DONE.value
-    #     ):
-    #         logger.warning(f"Can't start live mode, acquisition running on detector {self.name}.")
-    #         return
-    #     if self._live_mode_run_event.is_set():
-    #         logger.warning(f"Live mode is already running on detector {self.name}.")
-    #         return
-
-    #     # Set relevant PVs
-    #     self.cam.array_counter.set(0).wait(5)  # Reset array counter
-    #     self.cam.num_images.set(n_images_max).wait(5)
-    #     logger.info(
-    #         f"Setting exposure time to {exp_time} s for live mode on {self.name} with {n_images_max} images."
-    #     )
-    #     self.cam.acquire_time.set(exp_time - self._readout_time).wait(5)
-    #     self.cam.acquire_period.set(exp_time).wait(5)
-
-    #     status = CompareStatus(self.cam.acquire, ACQUIREMODE.DONE.value)
-    #     # It should suffice to make sure that self.hdf.capture is not set..
-    #     self.cam.acquire.put(1)  # Start measurement
-    #     try:
-    #         status.wait(10)
-    #     except WaitTimeoutError:
-    #         content = traceback.format_exc()
-    #         raise RuntimeError(
-    #             f"Live Mode on detector {self.name} did not stop: {content} after 10s."
-    #         )
-    #     self._live_mode_run_event.set()
-
-    # def _live_mode_loop(self, exp_time: float):
-    #     while not self._live_mode_kill_event.is_set():
-    #         self._live_mode_run_event.wait()
-    #         self._live_mode_stopped_event.clear()  # Clear stopped event
-    #         time.sleep(self._readout_time)  # make sure to wait for the readout_time
-    #         n_images = self.cam.array_counter.get()
-    #         status = CompareStatus(self.cam.array_counter, n_images + 1)
-    #         self.trigger_shot.put(1)
-    #         try:
-    #             status.wait(60)
-    #         except WaitTimeoutError:
-    #             logger.warning(
-    #                 f"Live mode timeout exceeded for {self.name}. Continuing in live_mode_loop"
-    #             )
-    #         if self._live_mode_run_event.is_set():
-    #             self._live_mode_stopped_event.set()  # Set stopped event to indicate that live mode loop is stopped
-
-    # def stop_live_mode(self):
-    #     """Stop live mode."""
-    #     if self._live_mode_stopped_event.is_set():
-    #         return
-    #     status = CompareStatus(self.cam.acquire, ACQUIREMODE.DONE.value)
-    #     self.cam.acquire.put(0)
-    #     self._live_mode_run_event.clear()
-    #     if not self._live_mode_stopped_event.wait(10):  # Wait until live mode loop is stopped
-    #         logger.warning(f"Live mode did not stop in time for {self.name}.")
-    #     try:
-    #         status.wait(10)
-    #     except WaitTimeoutError:
-    #         content = traceback.format_exc()
-    #         raise RuntimeError(
-    #             f"Live Mode on detector {self.name} did not stop: {content} after 10s."
-    #         )
-
-    def check_detector_stop_running_acquisition(self) -> AndStatus:
-        """Check if the detector is still running an acquisition."""
-        status_acquire = CompareStatus(self.cam.acquire, ACQUIREMODE.DONE.value)
-        status_writing = CompareStatus(self.hdf.capture, ACQUIREMODE.DONE.value)
-        status_cam_server = CompareStatus(self.cam.armed, DETECTORSTATE.UNARMED.value)
-        status = status_acquire & status_writing & status_cam_server
-        return status
-
-    def _calculate_trigger(self, scan_msg: ScanStatusMessage) -> Tuple[float, float]:
-        self._update_scan_parameter()
-        total_osc = 0
-        calc_duration = 0
-        total_trig_lo = 0
-        total_trig_hi = 0
-        # Switching high/low is intended as angle is inverse to energy and settings in BEC are always in energy
-        loc_break_enable_low = self.scan_parameter.break_enable_high
-        loc_break_time_low = self.scan_parameter.break_time_high
-        loc_cycle_low = self.scan_parameter.cycle_high
-        loc_break_enable_high = self.scan_parameter.break_enable_low
-        loc_break_time_high = self.scan_parameter.break_time_low
-        loc_cycle_high = self.scan_parameter.cycle_low
-
-        if not loc_break_enable_low:
-            loc_break_time_low = 0
-            loc_cycle_low = 1
-        if not loc_break_enable_high:
-            loc_break_time_high = 0
-            loc_cycle_high = 1
-
-        total_osc = self.scan_parameter.scan_duration / (
-            self.scan_parameter.scan_time +
-            loc_break_time_low / (2 * loc_cycle_low) +
-            loc_break_time_high / (2 * loc_cycle_high)
-        )
-        total_osc = np.ceil(total_osc)
-        total_osc = total_osc + total_osc % 2 # round up to the next even number
-
-        if loc_break_enable_low:
-            total_trig_lo = np.floor(total_osc / (2 * loc_cycle_low))
-        if loc_break_enable_high:
-            total_trig_hi = np.floor(total_osc / (2 * loc_cycle_high))
-        calc_duration = total_osc * self.scan_parameter.scan_time + total_trig_lo * loc_break_time_low + total_trig_hi * loc_break_time_high
-		
-        if calc_duration < self.scan_parameter.scan_duration:
-            # Due to inaccuracy in formula, this can happen, we then need to manually add two oscillations and recalculate the triggers
-            total_osc = total_osc + 2
-            if loc_break_enable_low:
-                total_trig_lo = np.floor(total_osc / (2 * loc_cycle_low))
-            if loc_break_enable_high:
-                total_trig_hi = np.floor(total_osc / (2 * loc_cycle_high))
-            calc_duration = total_osc * self.scan_parameter.scan_time + total_trig_lo * loc_break_time_low + total_trig_hi * loc_break_time_high
-
-        return total_trig_lo, total_trig_hi
-
-    ########################################
-    #  Beamline Specific Implementations   #
-    ########################################
-
-    def on_init(self) -> None:
-        """
-        Called when the device is initialized.
-
-        No signals are connected at this point. If you like to
-        set default values on signals, please use on_connected instead.
-        """
-
-    def on_connected(self) -> None:
-        """
-        Called after the device is connected and its signals are connected.
-        Default values for signals should be set here.
-        """
-
-        status_cam = CompareStatus(self.cam.acquire, ACQUIREMODE.DONE.value)
-        status_hdf = CompareStatus(self.hdf.capture, ACQUIREMODE.DONE.value)
-        try:
-            status_cam.wait(timeout=5)
-            status_hdf.wait(timeout=5)
-        except WaitTimeoutError:
-            logger.warning(
-                f"Camera device {self.name} was running an acquisition. Stopping acquisition."
-            )
-            self.cam.acquire.put(0)
-            self.hdf.capture.put(0)
-
-        self.cam.trigger_mode.set(TRIGGERMODE.MULT_TRIGGER.value).wait(5)
-        self.cam.image_file_tmot.set(60).wait(5)
-        self.hdf.file_write_mode.set(FILEWRITEMODE.STREAM.value).wait(5)
-        self.hdf.file_template.set("%s%s").wait(5)
-        self.hdf.auto_save.set(1).wait(5)
-        self.hdf.lazy_open.set(1).wait(5)
-        self.hdf.compression.set(COMPRESSIONALGORITHM.NONE.value).wait(5)  # To test which to use
-        # Start polling thread...
-        self._poll_thread.start()
-        # Start live mode thread...
-        # self._live_mode_thread.start()
-
-    def on_stage(self) -> DeviceStatus | None:
-        """
-        Called while staging the device.
-
-        Information about the upcoming scan can be accessed from the scan_info
-        (self.scan_info.msg) object.
-        """
-        # self.stop_live_mode()  # Make sure that live mode is stopped if scan runs
-
-        # If user has activated alignment mode on qt panel, switch back to multitrigger and stop acquisition
-        if self.cam.trigger_mode.get() != TRIGGERMODE.MULT_TRIGGER.value:
-            self.cam.trigger_mode.set(TRIGGERMODE.MULT_TRIGGER.value).wait(5)
-        if self.cam.acquire.get() == ACQUIREMODE.ACQUIRING.value:
-            self.cam.acquire.put(0)
-            status_cam = CompareStatus(self.cam.acquire, ACQUIREMODE.DONE.value)
-            status_cam.wait(timeout=5)
-
-        scan_msg: ScanStatusMessage = self.scan_info.msg
-        if scan_msg.scan_name in self.xas_xrd_scan_names:
-            self._update_scan_parameter()
-            # Compute number of triggers
-            total_trig_lo, total_trig_hi = self._calculate_trigger(scan_msg)
-            # Set the number of images, we may also set this to a higher values if preferred and stop the acquisition
-            # TODO This logic is prone to errors, as we rely on the scans to nicely resolve to n_images. We should
-            # use here instead a way of settings the n_images independently of the scan parameters to avoid running out of sync
-            # with the complete method. Ideally we comput them in the scan itself.. This is much safer IMO!
-            self.n_images = (total_trig_lo + total_trig_hi) * self.scan_parameter.n_of_trigger
-            exp_time = self.scan_parameter.exp_time
-            self.trigger_source.set(MONOTRIGGERSOURCE.INPOS).wait(5)
-            self.trigger_n_of.set(self.scan_parameter.n_of_trigger).wait(5)
-
-        elif scan_msg.scan_type == "step":
-            self.n_images = scan_msg.num_points * scan_msg.scan_parameters.get(
-                "frames_per_trigger", 1
-            )
-            exp_time = scan_msg.scan_parameters.get("exp_time")
-            self.trigger_source.set(MONOTRIGGERSOURCE.EPICS).wait(5)
-            self.trigger_n_of.set(1).wait(5)  # BEC will trigger each acquisition
-        else:
-            # TODO how to deal with fly scans?
-            return None
-        # Common settings
-        self.trigger_mode.set(MONOTRIGGERMODE.PULSE).wait(5)
-        self.trigger_period.set(exp_time).wait(5)
-        self.trigger_pulse_length.set(0.005).wait(
-            5
-        )  # Pulse length of 5 ms enough for Pilatus and NIDAQ
-
-        if exp_time - self._readout_time <= 0:
-            raise ValueError(
-                (
-                    f"Exposure time {exp_time} is too short ",
-                    f"for Pilatus with readout_time {self._readout_time}.",
-                )
-            )
-        detector_exp_time = exp_time - self._readout_time
-        self._full_path = get_full_path(scan_msg, name="pilatus")
-        file_path = "/".join(self._full_path.split("/")[:-1])
-        file_name = self._full_path.split("/")[-1]
-        # Prepare detector and backend
-        self.cam.array_callbacks.set(1).wait(5)  # Enable array callbacks
-        self.hdf.enable.set(1).wait(5)  # Enable HDF5 plugin
-        # Camera settings
-        self.cam.num_exposures.set(1).wait(5)
-        self.cam.num_images.set(self.n_images).wait(5)
-        self.cam.acquire_time.set(detector_exp_time).wait(5)  # let's try this
-        self.cam.acquire_period.set(exp_time).wait(5)
-        self.filter_number.set(0).wait(5)
-        # HDF5 settings
-        logger.debug(
-            f"Setting HDF5 file path to {file_path} and file name to {file_name}. full_path is {self._full_path}"
-        )
-        self.hdf.file_path.set(file_path).wait(5)
-        self.hdf.file_name.set(file_name).wait(5)
-        self.hdf.num_capture.set(self.n_images).wait(5)
-        self.cam.array_counter.set(0).wait(5)  # Reset array counter
-        self.file_event.put(
-            file_path=self._full_path,
-            done=False,
-            successful=False,
-            hinted_h5_entries={"data": "/entry/data/data"},
-        )
-
-    def on_unstage(self) -> None:
-        """Called while unstaging the device."""
-
-    def on_pre_scan(self) -> DeviceStatus | None:
-        """Called right before the scan starts on all devices automatically."""
-        scan_msg: ScanStatusMessage = self.scan_info.msg
-        if (
-            scan_msg.scan_name in self.xas_xrd_scan_names or scan_msg.scan_type == "step"
-        ):  # TODO how to deal with fly scans?
-            status_hdf = CompareStatus(self.hdf.capture, ACQUIREMODE.ACQUIRING.value)
-            status_cam = CompareStatus(self.cam.acquire, ACQUIREMODE.ACQUIRING.value)
-            status_cam_server = CompareStatus(self.cam.armed, DETECTORSTATE.ARMED.value)
-            status = status_hdf & status_cam & status_cam_server
-            self.cam.acquire.put(1)
-            self.hdf.capture.put(1)
-            self.cancel_on_stop(status)
-            return status
-        else:
-            return None
-
-    def on_trigger(self) -> DeviceStatus | None:
-        """Called when the device is triggered."""
-        scan_msg: ScanStatusMessage = self.scan_info.msg
-        if not scan_msg.scan_type == "step":
-            return None
-        start_time = time.time()
-        img_counter = self.hdf.num_captured.get()
-        logger.debug(f"Triggering image with num_captured {img_counter}")
-        status = CompareStatus(self.hdf.num_captured, img_counter + 1)
-        logger.debug(f"Triggering took image {time.time() - start_time:.3f} seconds")
-        self.trigger_shot.put(1)
-        self.cancel_on_stop(status)
-        return status
-
-    def _complete_callback(self, status: DeviceStatus):
-        """Callback for when the device completes a scan."""
-        scan_msg: ScanStatusMessage = self.scan_info.msg
-        if (
-            scan_msg.scan_name in self.xas_xrd_scan_names or scan_msg.scan_type == "step"
-        ):  # TODO how to deal with fly scans?
-            if status.success:
-                self.file_event.put(
-                    file_path=self._full_path,
-                    done=True,
-                    successful=True,
-                    hinted_h5_entries={"data": "/entry/data/data"},
-                )
-            else:
-                self.file_event.put(
-                    file_path=self._full_path,
-                    done=True,
-                    successful=False,
-                    hinted_h5_entries={"data": "/entry/data/data"},
-                )
-        else:
-            return None
-
-    def on_complete(self) -> DeviceStatus | None:
-        """Called to inquire if a device has completed a scans."""
-        scan_msg: ScanStatusMessage = self.scan_info.msg
-        if (
-            scan_msg.scan_name in self.xas_xrd_scan_names or scan_msg.scan_type == "step"
-        ):  # TODO how to deal with fly scans?
-            status_hdf = CompareStatus(self.hdf.capture, ACQUIREMODE.DONE.value)
-            status_cam = CompareStatus(self.cam.acquire, ACQUIREMODE.DONE.value)
-            status_cam_server = CompareStatus(self.cam.armed, DETECTORSTATE.UNARMED.value)
-            if self.scan_info.msg.scan_name in self.xas_xrd_scan_names:
-                # For long scans, it can be that the mono will execute one cycle more,
-                # meaning a few more XRD triggers will be sent
-                status_img_written = CompareStatus(
-                    self.hdf.num_captured, self.n_images, operation_success=">="
-                )
-            else:
-                status_img_written = CompareStatus(self.hdf.num_captured, self.n_images)
-            status_img_written = CompareStatus(self.hdf.num_captured, self.n_images)
-            status = status_hdf & status_cam & status_img_written & status_cam_server
-            status.add_callback(self._complete_callback)  # Callback that writing was successful
-            self.cancel_on_stop(status)
-            return status
-        else:
-            return None
-
-    def on_kickoff(self) -> None:
-        """Called to kickoff a device for a fly scan. Has to be called explicitly."""
-
-    def on_stop(self) -> None:
-        """Called when the device is stopped."""
-        self.cam.acquire.put(0)
-        self.hdf.capture.put(0)
-
-    def on_destroy(self) -> None:
-        """Called when the device is destroyed. Cleanup resources here."""
-        self._poll_thread_kill_event.set()
-        # TODO do we need to clean the poll thread ourselves?
-        self.on_stop()
-
-    def _update_scan_parameter(self):
-        """Get the scan_info parameters for the scan."""
-        for key, value in self.scan_info.msg.request_inputs["inputs"].items():
-            if hasattr(self.scan_parameter, key):
-                setattr(self.scan_parameter, key, value)
-        for key, value in self.scan_info.msg.request_inputs["kwargs"].items():
-            if hasattr(self.scan_parameter, key):
-                setattr(self.scan_parameter, key, value)
-
-
-if __name__ == "__main__":
-    try:
-        pilatus = Pilatus(name="pilatus", prefix="X01DA-ES2-PIL:")
-        logger.info("Calling wait for connection")
-        # pilatus.wait_for_connection(all_signals=True, timeout=20)
-        logger.info("Connecting to pilatus...")
-        pilatus.on_connected()
-        for exp_time, scan_number, n_pnts in zip([0.5, 1.0, 2.0], [1, 2, 3], [30, 20, 10]):
-            logger.info("Sleeping for 5s")
-            time.sleep(5)
-            pilatus.scan_info.msg.num_points = n_pnts
-            pilatus.scan_info.msg.scan_parameters["exp_time"] = exp_time
-            pilatus.scan_info.msg.scan_parameters["frames_per_trigger"] = 1
-            pilatus.scan_info.msg.info["file_components"] = (
-                f"/sls/x01da/data/p22481/raw/data/S00000-00999/S{scan_number:05d}/S{scan_number:05d}",
-                "h5",
-            )
-            pilatus.on_stage()
-            logger.info("Stage done")
-            pilatus.on_pre_scan().wait(timeout=5)
-            logger.info("Pre-scan done")
-            for ii in range(pilatus.scan_info.msg.num_points):
-                # if ii == 0:
-                # time.sleep(1)
-                logger.info(f"Triggering image {ii+1}/{pilatus.scan_info.msg.num_points}")
-                pilatus.on_trigger().wait()
-                p = pilatus.preview.get()
-                if p is not None:
-                    p: DevicePreviewMessage
-                    logger.warning(
-                        f"Preview shape: {p.data.shape}, max: {np.max(p.data)}, min: {np.min(p.data)}, mean: {np.mean(p.data)}"
-                    )
-            pilatus.on_complete().wait(timeout=5)
-            logger.info("Complete done")
-            pilatus.on_unstage()
-            logger.info("Unstage done")
-    finally:
-        pilatus.on_destroy()

debye_bec/devices/pilatus_curtain.py

@@ -1,100 +0,0 @@
-"""ES2 Pilatus Curtain"""
-
-from __future__ import annotations
-
-import enum
-from typing import TYPE_CHECKING
-
-from ophyd import Component as Cpt
-from ophyd import EpicsSignal, EpicsSignalRO
-from ophyd_devices import CompareStatus, DeviceStatus
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-
-if TYPE_CHECKING:
-    from bec_lib.devicemanager import ScanInfo
-
-
-class PilatusCurtainError(Exception):
-    """PilatusCurtain specific exception"""
-
-
-class COVER(int, enum.Enum):
-    """Pilatus Curtain States"""
-
-    # TODO What are the proper states here? - Probably enums for the states are better.
-    OPEN = 0
-    CLOSED = 0
-    ERROR = 1
-
-
-class PilatusCurtain(PSIDeviceBase):
-    """Class for the ES2 Pilatus Curtain"""
-
-    USER_ACCESS = ["open", "close"]
-
-    open_cover = Cpt(EpicsSignal, suffix="OpenCover", kind="config", doc="Open Cover")
-
-    close_cover = Cpt(EpicsSignal, suffix="CloseCover", kind="config", doc="Close Cover")
-
-    cover_is_closed = Cpt(
-        EpicsSignalRO, suffix="CoverIsClosed", kind="config", doc="Cover is closed"
-    )
-
-    cover_is_open = Cpt(EpicsSignalRO, suffix="CoverIsOpen", kind="config", doc="Cover is open")
-
-    cover_is_moving = Cpt(
-        EpicsSignalRO, suffix="CoverIsMoving", kind="config", doc="Cover is moving"
-    )
-
-    cover_error = Cpt(EpicsSignalRO, suffix="CoverError", kind="config", doc="Cover error")
-
-    def __init__(self, *, name: str, prefix: str = "", scan_info: ScanInfo | None = None, **kwargs):
-        super().__init__(name=name, prefix=prefix, scan_info=scan_info, **kwargs)
-
-        self.timeout_for_pvwait = 30
-        # Wait for connection on all components, ensure IOC is connected
-        self.wait_for_connection(all_signals=True, timeout=5)
-
-    def on_connected(self) -> None:
-        """
-        Called after the device is connected and its signals are connected.
-        Default values for signals should be set here.
-        """
-        if self.cover_error.get() == COVER.ERROR:
-            raise PilatusCurtainError("Pilatus Curtain is in an error state!")
-
-    def on_stage(self) -> DeviceStatus | None:
-        """Called while staging the device."""
-        return self.open()
-
-    def on_unstage(self) -> DeviceStatus | None:
-        """Called while unstaging the device."""
-        # return self.close()
-
-    def on_stop(self) -> DeviceStatus | None:
-        """Called when the device is stopped."""
-        # return self.close()
-
-    def open(self) -> DeviceStatus | None:
-        """Open the cover"""
-        if self.cover_is_closed.get() == COVER.CLOSED:
-            self.open_cover.put(1)
-            # TODO timeout ok?
-            status_open = CompareStatus(self.cover_is_open, COVER.OPEN, timeout=5)
-            status_error = CompareStatus(self.cover_error, COVER.ERROR, operation_success="!=")
-            status = status_open & status_error
-            return status
-        else:
-            return None
-
-    def close(self) -> DeviceStatus | None:
-        """Close the cover"""
-        if self.cover_is_open.get() == COVER.OPEN:
-            self.close_cover.put(1)
-            # TODO timeout ok?
-            status_close = CompareStatus(self.cover_is_closed, COVER.CLOSED, timeout=5)
-            status_error = CompareStatus(self.cover_error, COVER.ERROR, operation_success="!=")
-            status = status_close & status_error
-            return status
-        else:
-            return None

debye_bec/devices/reffoilchanger.py

@@ -1,200 +0,0 @@
-"""ES2 Reference Foil Changer"""
-
-from __future__ import annotations
-
-import enum
-from typing import TYPE_CHECKING
-
-from ophyd import Component as Cpt
-from ophyd import EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV
-from ophyd.status import DeviceStatus
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from ophyd_devices.utils.errors import DeviceStopError
-
-if TYPE_CHECKING:
-    from bec_lib.devicemanager import ScanInfo
-
-
-class Status(int, enum.Enum):
-    """Enum class for the status field"""
-
-    BOOT = 0
-    RETRACTED = 1
-    INSERTED = 2
-    MOVING = 3
-    ERROR = 4
-
-
-class OpMode(int, enum.Enum):
-    """Enum class for the Operating Mode field"""
-
-    USERMODE = 0
-    MAINTENANCEMODE = 1
-    DIAGNOSTICMODE = 2
-    ERRORMODE = 3
-
-
-class Reffoilchanger(PSIDeviceBase):
-    """Class for the ES2 Reference Foil Changer"""
-
-    USER_ACCESS = ["insert"]
-
-    inserted = Cpt(
-        EpicsSignalRO, suffix="ES2-REF:TRY-FilterInserted", kind="config", doc="Inserted indicator"
-    )
-    retracted = Cpt(
-        EpicsSignalRO,
-        suffix="ES2-REF:TRY-FilterRetracted",
-        kind="config",
-        doc="Retracted indicator",
-    )
-    moving = Cpt(EpicsSignalRO, suffix="ES2-REF:ROTY.MOVN", kind="config", doc="Moving indicator")
-    status = Cpt(
-        EpicsSignal, suffix="ES2-REF:SELN-FilterState-ENUM_RBV", kind="config", doc="Status"
-    )
-    status_string = Cpt(
-        EpicsSignal, suffix="ES2-REF:SELN-FilterState-ENUM_RBV", kind="config", doc="Status", string=True
-    )
-    op_mode = Cpt(
-        EpicsSignalWithRBV, suffix="ES2-REF:SELN-OpMode-ENUM", kind="config", doc="Status"
-    )
-    op_mode_string = Cpt(
-        EpicsSignalWithRBV, suffix="ES2-REF:SELN-OpMode-ENUM", kind="config", doc="Status", string=True
-    )
-    ref_set = Cpt(EpicsSignal, suffix="ES2-REF:SELN-SET", kind="config", doc="Requested reference")
-    ref_rb = Cpt(
-        EpicsSignalRO, suffix="ES2-REF:SELN-RB", kind="config", doc="Currently set reference"
-    )
-
-    foil01 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL01.DESC", kind="config", doc="Foil 01")
-    foil02 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL02.DESC", kind="config", doc="Foil 02")
-    foil03 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL03.DESC", kind="config", doc="Foil 03")
-    foil04 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL04.DESC", kind="config", doc="Foil 04")
-    foil05 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL05.DESC", kind="config", doc="Foil 05")
-    foil06 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL06.DESC", kind="config", doc="Foil 06")
-    foil07 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL07.DESC", kind="config", doc="Foil 07")
-    foil08 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL08.DESC", kind="config", doc="Foil 08")
-    foil09 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL09.DESC", kind="config", doc="Foil 09")
-    foil10 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL10.DESC", kind="config", doc="Foil 10")
-    foil11 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL11.DESC", kind="config", doc="Foil 11")
-    foil12 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL12.DESC", kind="config", doc="Foil 12")
-    foil13 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL13.DESC", kind="config", doc="Foil 13")
-    foil14 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL14.DESC", kind="config", doc="Foil 14")
-    foil15 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL15.DESC", kind="config", doc="Foil 15")
-    foil16 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL16.DESC", kind="config", doc="Foil 16")
-    foil17 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL17.DESC", kind="config", doc="Foil 17")
-    foil18 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL18.DESC", kind="config", doc="Foil 18")
-    foil19 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL19.DESC", kind="config", doc="Foil 19")
-    foil20 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL20.DESC", kind="config", doc="Foil 20")
-    foil21 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL21.DESC", kind="config", doc="Foil 21")
-    foil22 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL22.DESC", kind="config", doc="Foil 22")
-    foil23 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL23.DESC", kind="config", doc="Foil 23")
-    foil24 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL24.DESC", kind="config", doc="Foil 24")
-    foil25 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL25.DESC", kind="config", doc="Foil 25")
-    foil26 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL26.DESC", kind="config", doc="Foil 26")
-    foil27 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL27.DESC", kind="config", doc="Foil 27")
-    foil28 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL28.DESC", kind="config", doc="Foil 28")
-    foil29 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL29.DESC", kind="config", doc="Foil 29")
-    foil30 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL30.DESC", kind="config", doc="Foil 30")
-    foil31 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL31.DESC", kind="config", doc="Foil 31")
-    foil32 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL32.DESC", kind="config", doc="Foil 32")
-    foil33 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL33.DESC", kind="config", doc="Foil 33")
-    foil34 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL34.DESC", kind="config", doc="Foil 34")
-    foil35 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL35.DESC", kind="config", doc="Foil 35")
-    foil36 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL36.DESC", kind="config", doc="Foil 36")
-    foil37 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL37.DESC", kind="config", doc="Foil 37")
-    foil38 = Cpt(EpicsSignalRO, suffix="ES-REFFOIL:FOIL38.DESC", kind="config", doc="Foil 38")
-
-    def __init__(self, *, name: str, prefix: str = "", scan_info: ScanInfo | None = None, **kwargs):
-        super().__init__(name=name, prefix=prefix, scan_info=scan_info, **kwargs)
-
-        self.foils = [
-            self.foil01,
-            self.foil02,
-            self.foil03,
-            self.foil04,
-            self.foil05,
-            self.foil06,
-            self.foil07,
-            self.foil08,
-            self.foil09,
-            self.foil10,
-            self.foil11,
-            self.foil12,
-            self.foil13,
-            self.foil14,
-            self.foil15,
-            self.foil16,
-            self.foil17,
-            self.foil18,
-            self.foil19,
-            self.foil20,
-            self.foil21,
-            self.foil22,
-            self.foil23,
-            self.foil24,
-            self.foil25,
-            self.foil26,
-            self.foil27,
-            self.foil28,
-            self.foil29,
-            self.foil30,
-            self.foil31,
-            self.foil32,
-            self.foil33,
-            self.foil34,
-            self.foil35,
-            self.foil36,
-            self.foil37,
-            self.foil38,
-        ]
-
-    def insert(self, ref: str, wait: bool = False) -> DeviceStatus:
-        """Insert a reference
-
-        Args:
-             ref (str) : Desired reference foil name, e.g. Fe or Pt
-             wait (bool): If you like to wait for the filling to finish. Default False.
-        """
-
-        filter_number = -1
-        for i, foil in enumerate(self.foils):
-            if foil.get() == ref:
-                filter_number = i + 1
-                break
-        if filter_number == -1:
-            raise ValueError(f"Requested foil ({ref}) is not in list of available foils")
-
-        if self.op_mode.get() == OpMode.USERMODE:
-            self.ref_set.put(filter_number)
-
-            def wait_for_status():
-                return (
-                    (self.status.get() == Status.RETRACTED)
-                    or (self.status.get() == Status.MOVING)
-                    or (
-                        self.ref_rb.get() < (filter_number + 0.2)
-                        and self.ref_rb.get() > (filter_number - 0.2)
-                    )
-                )
-
-            timeout = 3
-            if not self.wait_for_condition(wait_for_status, timeout=timeout, check_stopped=True):
-                raise TimeoutError(
-                    f"Reference foil changer did not retract the current foil within {timeout}s"
-                )
-
-            def wait_for_change_finished():
-                return self.status.get() == Status.INSERTED and self.op_mode == OpMode.USERMODE
-
-            # Wait until new reference foil is inserted
-            status = self.task_handler.submit_task(
-                task=self.wait_for_condition, task_args=(wait_for_change_finished, 5, True)
-            )
-            if wait:
-                status.wait()
-            return status
-        else:
-            raise DeviceStopError(
-                f"Reference foil changer must be in User Mode but is in {self.op_mode.get(as_string=True)}"
-            )

debye_bec/devices/test_utils/utils.py

@@ -1,9 +0,0 @@
-def patch_dual_pvs(device):
-    device.wait_for_connection(all_signals=True)
-    for walk in device.walk_signals():
-        if not hasattr(walk.item, "_read_pv"):
-            continue
-        if not hasattr(walk.item, "_write_pv"):
-            continue
-        if walk.item._read_pv.pvname.endswith("_RBV"):
-            walk.item._read_pv = walk.item._write_pv

debye_bec/file_writer/__init__.py

@@ -1 +0,0 @@
-from .debye_nexus_structure import DebyeNexusStructure

debye_bec/file_writer/debye_nexus_structure.py

@@ -1,353 +0,0 @@
-from bec_server.file_writer.default_writer import DefaultFormat
-
-import debye_bec.bec_widgets.widgets.x01da_parameters as bl
-
-class DebyeNexusStructure(DefaultFormat):
-    """Nexus Structure for Debye"""
-
-    def format(self) -> None:
-        """Specify the file format for the file writer."""
-
-        entry = self.storage.create_group(name="entry")
-        entry.attrs["NX_class"] = "NXentry"
-        instrument = entry.create_group(name="instrument")
-        instrument.attrs["NX_class"] = "NXinstrument"
-
-        ##################
-        ## source specific information
-        ###################
-
-        source = instrument.create_group(name="source")
-        source.attrs["NX_class"] = "NXsource"
-
-        beamline_name = source.create_dataset(name="beamline_name", data="Debye")
-        beamline_name.attrs["NX_class"] = "NX_CHAR"
-
-        facility_name = source.create_dataset(name="facility_name", data="Swiss Light Source")
-        facility_name.attrs["NX_class"] = "NX_CHAR"
-
-        probe = source.create_dataset(name="probe", data="X-ray")
-        probe.attrs["NX_class"] = "NX_CHAR"
-
-        if "curr" in self.device_manager.devices:
-            ring_current = source.create_soft_link(
-            name="ring_current",
-            target="/entry/collection/devices/curr/curr/value",
-            )
-            ring_current.attrs["NX_class"] = "NX_FLOAT"
-            ring_current.attrs["units"] = "mA"
-
-        ###################
-        ## mo1_bragg specific information
-        ###################
-
-        ## Logic if device exist
-        if "mo1_bragg" in self.device_manager.devices:
-
-            monochromator = instrument.create_group(name="monochromator")
-            monochromator.attrs["NX_class"] = "NXmonochromator"
-            crystal = monochromator.create_group(name="crystal")
-            crystal.attrs["NX_class"] = "NXcrystal"
-
-            # Create a dataset
-            chemical_formular = crystal.create_dataset(name="chemical_formular", data="Si")
-            chemical_formular.attrs["NX_class"] = "NX_CHAR"
-
-            reflection = crystal.create_soft_link(
-                name="reflection",
-                target="/entry/collection/devices/mo1_bragg/mo1_bragg_crystal_current_xtal_string/value",
-            )
-            reflection.attrs["NX_class"] = "NX_CHAR"    
-
-            # Create a softlink
-            d_spacing = crystal.create_soft_link(
-            name="d_spacing",
-            target="/entry/collection/devices/mo1_bragg/mo1_bragg_crystal_current_d_spacing/value",
-            )
-            d_spacing.attrs["NX_class"] = "NX_FLOAT"
-            d_spacing.attrs["units"] = "angstrom"
-
-            bragg_offset = crystal.create_soft_link(
-                name="bragg_offset",
-                target="/entry/collection/devices/mo1_bragg/mo1_bragg_crystal_current_bragg_off/value",
-            )
-            bragg_offset.attrs["NX_class"] = "NX_FLOAT"      
-            bragg_offset.attrs["units"] = "degree"      
-
-            phi_offset = crystal.create_soft_link(
-                name="phi_offset",
-                target="/entry/collection/devices/mo1_bragg/mo1_bragg_crystal_current_phi_off/value",
-            )
-            phi_offset.attrs["NX_class"] = "NX_FLOAT"      
-            phi_offset.attrs["units"] = "degree"
-
-            ## Logic if device exist
-            if "mo1_roty" in self.device_manager.devices: 
-
-                # Create a softlink
-                azimuthal_angle = crystal.create_soft_link(
-                name="azimuthal_angle",
-                target="/entry/collection/devices/mo1_roty/mo1_roty/value",
-                )
-                azimuthal_angle.attrs["NX_class"] = "NX_FLOAT"  
-                azimuthal_angle.attrs["units"] = "degree"  
-                   
-            azm_offset = crystal.create_soft_link(
-                name="azm_offset",
-                target="/entry/collection/devices/mo1_bragg/mo1_bragg_crystal_current_azm_off/value",
-            )
-            azm_offset.attrs["NX_class"] = "NX_FLOAT"      
-            azm_offset.attrs["units"] = "degree"
-
-            miscut = crystal.create_soft_link(
-                name="miscut",
-                target="/entry/collection/devices/mo1_bragg/mo1_bragg_crystal_current_miscut/value",
-            )
-            miscut.attrs["NX_class"] = "NX_FLOAT"      
-            miscut.attrs["units"] = "degree"      
-
-        ###################
-        ### cm mirror specific information
-        ####################
-
-        collimating_mirror = instrument.create_group(name="collimating_mirror")
-        collimating_mirror.attrs["NX_class"] = "NXmirror"
-
-        cm_substrate_material = collimating_mirror.create_dataset(
-            name="substrate_material", data="Si"
-        )
-        cm_substrate_material.attrs["NX_class"] = "NX_CHAR"
-
-        #previous error due to space in name field
-
-        if "cm_bnd_radius" in self.device_manager.devices:
-            cm_bending_radius = collimating_mirror.create_soft_link(
-                name="sagittal_radius",
-                target="/entry/collection/devices/cm_bnd_radius/cm_bnd_radius/value",
-            )
-            cm_bending_radius.attrs["NX_class"] = "NX_FLOAT"
-            cm_bending_radius.attrs["units"] = "km"
-
-        if "cm_rotx" in self.device_manager.devices:
-            cm_incidence_angle = collimating_mirror.create_soft_link(
-                name="incidence_angle", target="/entry/collection/devices/cm_rotx/cm_rotx/value"
-            )
-            cm_incidence_angle.attrs["NX_class"] = "NX_FLOAT"
-            cm_incidence_angle.attrs["units"] = "mrad"
-
-        if "cm_roty" in self.device_manager.devices:
-            cm_yaw_angle = collimating_mirror.create_soft_link(
-                name="yaw_angle", target="/entry/collection/devices/cm_roty/cm_roty/value"
-            )
-            cm_yaw_angle.attrs["NX_class"] = "NX_FLOAT"
-            cm_yaw_angle.attrs["units"] = "mrad"
-
-        if "cm_rotz" in self.device_manager.devices:
-            cm_roll_angle = collimating_mirror.create_soft_link(
-                name="roll_angle", target="/entry/collection/devices/cm_rotz/cm_rotz/value"
-            )
-            cm_roll_angle.attrs["NX_class"] = "NX_FLOAT"
-            cm_roll_angle.attrs["units"] = "mrad"
-
-        if 'cm_trx' in self.device_manager.devices:
-            cm_trx = - self.device_manager.devices.cm_trx.read(cached=True).get('cm_trx').get('value')
-            stripe = 'Unknown'
-            for name, low, high in zip(bl.cm.surface, bl.cm.limOptX[0], bl.cm.limOptX[1]):
-                if low <= cm_trx <= high:
-                    stripe = name
-            cm_stripe = collimating_mirror.create_dataset(
-                name="stripe", data=stripe
-            )
-            cm_stripe.attrs["NX_class"] = "NX_CHAR"
-
-        ###################
-        ### fm mirror specific information
-        ####################
-
-        focusing_mirror = instrument.create_group(name="focusing_mirror")
-        focusing_mirror.attrs["NX_class"] = "NXmirror"
-
-        fm_substrate_material = focusing_mirror.create_dataset(
-            name="substrate_material", data="Si"
-        )
-        fm_substrate_material.attrs["NX_class"] = "NX_CHAR"
-
-        if "fm_bnd_radius" in self.device_manager.devices:
-            fm_bending_radius = focusing_mirror.create_soft_link(
-                name="sagittal_radius",
-                target="/entry/collection/devices/fm_bnd_radius/fm_bnd_radius/value",
-            )
-            fm_bending_radius.attrs["NX_class"] = "NX_FLOAT"
-            fm_bending_radius.attrs["units"] = "km"
-
-        if "fm_rotx" in self.device_manager.devices:
-            fm_incidence_angle = focusing_mirror.create_soft_link(
-                name="incidence_angle", target="/entry/collection/devices/fm_rotx/fm_rotx/value"
-            )
-            fm_incidence_angle.attrs["NX_class"] = "NX_FLOAT"
-            fm_incidence_angle.attrs["units"] = "mrad"
-
-        if "fm_roty" in self.device_manager.devices:
-            fm_yaw_angle = focusing_mirror.create_soft_link(
-                name="yaw_angle", target="/entry/collection/devices/fm_roty/fm_roty/value"
-            )
-            fm_yaw_angle.attrs["NX_class"] = "NX_FLOAT"
-            fm_yaw_angle.attrs["units"] = "mrad"
-
-        if "fm_rotz" in self.device_manager.devices:
-            fm_roll_angle = focusing_mirror.create_soft_link(
-                name="roll_angle", target="/entry/collection/devices/fm_rotz/fm_rotz/value"
-            )
-            fm_roll_angle.attrs["NX_class"] = "NX_FLOAT"
-            fm_roll_angle.attrs["units"] = "mrad"
-
-        if 'fm_trx' in self.device_manager.devices:
-            fm_trx = - self.device_manager.devices.fm_trx.read(cached=True).get('fm_trx').get('value')
-            stripe = 'Unknown'
-            for name, low, high in zip(bl.fm.surfaceFlat, bl.fm.limOptXFlat[1], bl.fm.limOptXFlat[0]):
-                if low <= fm_trx <= high:
-                    stripe = name + ' (flat)'
-            for name, low, high in zip(bl.fm.surfaceToroid, bl.fm.limOptXToroid[1], bl.fm.limOptXToroid[0]):
-                if low <= fm_trx <= high:
-                    stripe = name + ' (toroid)'
-            fm_stripe = focusing_mirror.create_dataset(
-                name="stripe", data=stripe
-            )
-            fm_stripe.attrs["NX_class"] = "NX_CHAR"
-
-        ###################
-        ## nidaq specific information
-        ###################
-
-        ## Logic if device exist
-        if "nidaq" in self.device_manager.devices:       
-            
-            #ai_chans_bits = self.device_manager.devices.nidaq.ai_chans.read(cached=True).get("nidaq_ai_chans").get("value")
-            ai_chans_bits = self.configuration.get("nidaq", {}).get("nidaq_ai_chans", {}).get("value")
-            ci_chans_bits = self.configuration.get("nidaq", {}).get("nidaq_ci_chans", {}).get("value")
-            #add_chans_bits = self.device_manager.devices.nidaq.add_chans.read(cached=True).get("nidaq_add_chans").get("value")
-            add_chans_bits = self.configuration.get("nidaq", {}).get("nidaq_add_chans", {}).get("value")
-
-            measurement_mode = entry.create_group(name="mode")
-            measurement_mode.attrs["NX_class"] = "NX_CHAR"
-
-            if (int(ci_chans_bits) & 0x7F) != 0:
-                # Create a dataset
-                rayspec_sdd_active = measurement_mode.create_group(name="Multi_Element_Partial_Fluorescence_Yield")
-                me_sdd = rayspec_sdd_active.create_dataset(name="Detector", data="Rayspec 7 element Silicon Drift Detector")
-                me_sdd.attrs["NX_class"] = "NX_CHAR"
-
-            if (int(ci_chans_bits) & (1<<8)) != 0:
-                # Create a dataset
-                ketek_sdd_active = measurement_mode.create_group(name="Single_Element_Partial_Fluorescence_Yield")
-                se_sdd = ketek_sdd_active.create_dataset(name="Detector", data="Ketex mini single element Silicon Drift Detector")
-                se_sdd.attrs["NX_class"] = "NX_CHAR"
-
-            if ((int(ai_chans_bits) & (1<<6)) != 0):
-                # Create a dataset
-                pips_active = measurement_mode.create_group(name="Total_Flourescence_Yield")
-                tfy = pips_active.create_dataset(name="Detector", data="Mirion Technologies Partially Depeleted PIPS Detector")
-                tfy.attrs["NX_class"] = "NX_CHAR"
-
-            if ((int(ai_chans_bits) & (1<<0)) != 0) & ((int(ai_chans_bits) & (1<<2)) != 0):
-                # Create a dataset
-                ai0ai2_active = measurement_mode.create_group(name="Sample_Transmission")
-                sam_trans = ai0ai2_active.create_dataset(name="Detector", data="Ionitec 15 cm gas filled Ionisation Chambers")
-                sam_trans.attrs["NX_class"] = "NX_CHAR"
-
-            if ((int(ai_chans_bits) & (1<<2)) != 0) & ((int(ai_chans_bits) & (1<<4)) != 0):
-                # Create a dataset
-                ai2ai4_active = measurement_mode.create_group(name="Reference_Transmission")
-                ref_trans = ai2ai4_active.create_dataset(name="Detector", data="Ionitec 15 cm gas filled Ionisation Chambers")
-                ref_trans.attrs["NX_class"] = "NX_CHAR"
-
-            main_data = entry.create_group(name="data")
-            main_data.attrs["NX_class"] = "NXdata"
-
-            ##################
-            ## energy, test whether the signal exists. how to check from config?
-            ###################
-    
-            energy = main_data.create_group(name="energy")
-            energy.attrs["NX_class"] = "NXdata"
-            energy.attrs["units"] = "eV"
-    
-            main_data.create_soft_link(name="energy", target="/entry/collection/readout_groups/async/nidaq/nidaq_energy/value")
-    
-            ##################
-            ## i0
-            ###################
-    
-            if (int(ai_chans_bits) & (1<<0)) !=0:
-                i0 = main_data.create_group(name="i0")
-                i0.attrs["NX_class"] = "NXdata"
-                i0.attrs["units"] = "V"
-    
-                main_data.create_soft_link(name="i0", target="/entry/collection/readout_groups/async/nidaq/nidaq_ai0_mean/value")
-
-            ##################
-            ## i1
-            ###################
-    
-            if (int(ai_chans_bits) & (1<<2)) !=0:
-                i1 = main_data.create_group(name="i1")
-                i1.attrs["NX_class"] = "NXdata"
-                i1.attrs["units"] = "V"
-
-                main_data.create_soft_link(name="i1", target="/entry/collection/readout_groups/async/nidaq/nidaq_ai2_mean/value")
-
-            ##################
-            ## i2
-            ###################
-
-            if (int(ai_chans_bits) & (1<<4)) !=0:
-                i2 = main_data.create_group(name="i2")
-                i2.attrs["NX_class"] = "NXdata"
-                i2.attrs["units"] = "V"
-
-                main_data.create_soft_link(name="i2", target="/entry/collection/readout_groups/async/nidaq/nidaq_ai4_mean/value")
-
-            ##################
-            ## ci sum
-            ###################
-
-            if int(ci_chans_bits) > 0:
-                ci_sum = main_data.create_group(name="Fluorescence_Sum")
-                ci_sum.attrs["NX_class"] = "NXdata"
-                ci_sum.attrs["units"] = "counts"
-
-                main_data.create_soft_link(name="Fluorescence_Sum", target="/entry/collection/readout_groups/async/nidaq/nidaq_cisum/value")  
-
-            ##################
-            ## mu sample, test whether the signal exists. how to check from config?
-            ###################
-
-            if (int(add_chans_bits) & (1<<0)) !=0:    
-                mu_sample = main_data.create_group(name="mu_sample")
-                mu_sample.attrs["NX_class"] = "NXdata"
-    
-                main_data.create_soft_link(name="mu_sample", target="/entry/collection/readout_groups/async/nidaq/nidaq_smpl_abs/value")
-
-            ##################
-            ## fluo sample, test whether the signal exists. how to check from config?
-            ###################
-
-            if (int(add_chans_bits) & (1<<1)) !=0:    
-                mu_sample = main_data.create_group(name="fluo_sample")
-                mu_sample.attrs["NX_class"] = "NXdata"
-    
-                main_data.create_soft_link(name="fluo_sample", target="/entry/collection/readout_groups/async/nidaq/nidaq_smpl_fluo/value")
-
-            ##################
-            ## mu reference, test whether the signal exists. how to check from config?
-            ###################
-    
-            if (int(add_chans_bits) & (1<<2)) !=0:  
-                mu_reference = main_data.create_group(name="mu_reference")
-                mu_reference.attrs["NX_class"] = "NXdata"
-    
-                main_data.create_soft_link(name="mu_reference", target="/entry/collection/readout_groups/async/nidaq/nidaq_ref_abs/value")
-
-
-
-

debye_bec/macros/README.md

@@ -1,6 +0,0 @@
-# Macros
-
-This directory is intended to store macros which will be loaded automatically when starting BEC.
-Macros are small functions to make repetitive tasks easier. Functions defined in python files in this directory will be accessible from the BEC console.
-Please do not put any code outside of function definitions here. If you wish for code to be automatically run when starting BEC, see the startup script at debye_bec/bec_ipython_client/startup/post_startup.py
-For a guide on writing macros, please see: https://bec.readthedocs.io/en/latest/user/command_line_interface.html#how-to-write-a-macro

debye_bec/scans/__init__.py

@@ -1,7 +0,0 @@
-from .mono_bragg_scans import (
-    XASAdvancedScan,
-    XASAdvancedScanWithXRD,
-    XASSimpleScan,
-    XASSimpleScanWithXRD,
-)
-from .nidaq_cont_scan import NIDAQContinuousScan

debye_bec/scans/metadata_schema/metadata_schema_registry.py

@@ -1,12 +0,0 @@
-# from .metadata_schema_xas_simple_scan import xas_simple_scan_schema
-
-METADATA_SCHEMA_REGISTRY = {  # "xas_simple_scan": xas_simple_scan_schema
-    # Add models which should be used to validate scan metadata here.
-    # Make a model according to the template, and import it as above
-    # Then associate it with a scan like so:
-    # "example_scan": ExampleSchema
-}
-
-# Define a default schema type which should be used as the fallback for everything:
-
-DEFAULT_SCHEMA = None

debye_bec/scans/metadata_schema/metadata_schema_template.py

@@ -1,34 +0,0 @@
-# # By inheriting from BasicScanMetadata you can define a schema by which metadata
-# # supplied to a scan must be validated.
-# # This schema is a Pydantic model: https://docs.pydantic.dev/latest/concepts/models/
-# # but by default it will still allow you to add any arbitrary information to it.
-# # That is to say, when you run a scan with which such a model has been associated in the
-# # metadata_schema_registry, you can supply any python dictionary with strings as keys
-# # and built-in python types (strings, integers, floats) as values, and these will be
-# # added to the experiment metadata, but it *must* contain the keys and values of the
-# # types defined in the schema class.
-# #
-# #
-# # For example, say that you would like to enforce recording information about sample
-# # pretreatment, you could define the following:
-# #
-#
-# from bec_lib.metadata_schema import BasicScanMetadata
-#
-#
-# class ExampleSchema(BasicScanMetadata):
-#    treatment_description: str
-#    treatment_temperature_k: int
-#
-#
-# # If this was used according to the example in metadata_schema_registry.py,
-# # then when calling the scan, the user would need to write something like:
-# >>> scans.example_scan(
-# >>>     motor,
-# >>>     1,
-# >>>     2,
-# >>>     3,
-# >>>     metadata={"treatment_description": "oven overnight", "treatment_temperature_k": 575},
-# >>> )
-#
-# # And the additional metadata would be saved in the HDF5 file created for the scan.

debye_bec/scans/metadata_schema/metadata_schema_xas_simple_scan.py

@@ -1,8 +0,0 @@
-from bec_lib.metadata_schema import BasicScanMetadata
-
-
-#
-#
-class xas_simple_scan_schema(BasicScanMetadata):
-    Edge: str
-    Element: str

debye_bec/scans/mono_bragg_scans.py

@@ -1,310 +0,0 @@
-"""This module contains the scan classes for the mono bragg motor of the Debye beamline."""
-
-import time
-from typing import Literal
-
-import numpy as np
-from bec_lib.device import DeviceBase
-from bec_lib.logger import bec_logger
-from bec_server.scan_server.scans import AsyncFlyScanBase
-
-logger = bec_logger.logger
-
-
-class XASSimpleScan(AsyncFlyScanBase):
-    """Class for the XAS simple scan"""
-
-    scan_name = "xas_simple_scan"
-    scan_type = "fly"
-    scan_report_hint = "device_progress"
-    required_kwargs = []
-    use_scan_progress_report = False
-    pre_move = False
-    gui_config = {
-        "Movement Parameters": ["start", "stop"],
-        "Scan Parameters": ["scan_time", "scan_duration"],
-    }
-
-    def __init__(
-        self,
-        start: float,
-        stop: float,
-        scan_time: float,
-        scan_duration: float,
-        motor: DeviceBase = "mo1_bragg",
-        **kwargs,
-    ):
-        """The xas_simple_scan is used to start a simple oscillating scan on the mono bragg motor.
-        Start and Stop define the energy range for the scan, scan_time is the time for one scan
-        cycle and scan_duration is the duration of the scan. If scan duration is set to 0, the
-        scan will run infinitely.
-
-        Args:
-            start (float): Start energy for the scan.
-            stop (float): Stop energy for the scan.
-            scan_time (float): Time for one scan cycle.
-            scan_duration (float): Duration of the scan.
-            motor (DeviceBase, optional): Motor device to be used for the scan.
-                                          Defaults to "mo1_bragg".
-        Examples:
-            >>> scans.xas_simple_scan(start=8000, stop=9000, scan_time=1, scan_duration=10)
-        """
-        super().__init__(**kwargs)
-        self.motor = motor
-        self.start = start
-        self.stop = stop
-        self.scan_time = scan_time
-        self.scan_duration = scan_duration
-        self.primary_readout_cycle = 1
-
-    def update_readout_priority(self):
-        """Ensure that NIDAQ is not monitored for any quick EXAFS."""
-        super().update_readout_priority()
-        self.readout_priority["async"].append("nidaq")
-
-    def prepare_positions(self):
-        """Prepare the positions for the scan.
-
-        Use here only start and end energy defining the range for the scan.
-        """
-        self.positions = np.array([self.start, self.stop], dtype=float)
-        self.num_pos = None
-        yield None
-
-    def pre_scan(self):
-        """Pre Scan action."""
-
-        self._check_limits()
-        # Ensure parent class pre_scan actions to be called.
-        yield from super().pre_scan()
-
-    def scan_report_instructions(self):
-        """
-        Return the instructions for the scan report.
-        """
-        yield from self.stubs.scan_report_instruction({"device_progress": [self.motor]})
-
-    def scan_core(self):
-        """Run the scan core.
-        Kickoff the oscillation on the Bragg motor and wait for the completion of the motion.
-        """
-        # Start the oscillation on the Bragg motor.
-        yield from self.stubs.kickoff(device=self.motor)
-        complete_status = yield from self.stubs.complete(device=self.motor, wait=False)
-
-        while not complete_status.done:
-            # Readout monitored devices
-            yield from self.stubs.read(group="monitored", point_id=self.point_id)
-            time.sleep(self.primary_readout_cycle)
-            self.point_id += 1
-
-        self.num_pos = self.point_id
-
-
-class XASSimpleScanWithXRD(XASSimpleScan):
-    """Class for the XAS simple scan with XRD"""
-
-    scan_name = "xas_simple_scan_with_xrd"
-    gui_config = {
-        "Movement Parameters": ["start", "stop"],
-        "Scan Parameters": ["scan_time", "scan_duration"],
-        "Low Energy Break": ["break_enable_low", "break_time_low", "cycle_low"],
-        "High Energy Break": ["break_enable_high", "break_time_high", "cycle_high"],
-        "XRD Triggers": ["exp_time", "n_of_trigger"],
-    }
-
-    def __init__(
-        self,
-        start: float,
-        stop: float,
-        scan_time: float,
-        scan_duration: float,
-        break_enable_low: bool,
-        break_time_low: float,
-        cycle_low: int,
-        break_enable_high: bool,
-        break_time_high: float,
-        cycle_high: float,
-        exp_time: float,
-        n_of_trigger: int,
-        motor: DeviceBase = "mo1_bragg",
-        **kwargs,
-    ):
-        """The xas_simple_scan_with_xrd is an oscillation motion on the mono motor
-        with XRD triggering at low and high energy ranges.
-        If scan duration is set to 0, the scan will run infinitely.
-
-        Args:
-            start (float): Start energy for the scan.
-            stop (float): Stop energy for the scan.
-            scan_time (float): Time for one oscillation .
-            scan_duration (float): Total duration of the scan.
-            break_enable_low (bool): Enable breaks for the low energy range.
-            break_time_low (float): Break time for the low energy range.
-            cycle_low (int): Specify how often the triggers should be considered,
-                             every nth cycle for low
-            break_enable_high (bool): Enable breaks for the high energy range.
-            break_time_high (float): Break time for the high energy range.
-            cycle_high (int): Specify how often the triggers should be considered,
-                              every nth cycle for high
-            exp_time (float): Length of 1 trigger period in seconds
-            n_of_trigger (int): Amount of triggers to be fired during break
-            motor (DeviceBase, optional): Motor device to be used for the scan.
-                                          Defaults to "mo1_bragg".
-
-        Examples:
-            >>> scans.xas_simple_scan_with_xrd(start=8000, stop=9000, scan_time=1, scan_duration=10, xrd_enable_low=True, num_trigger_low=5, cycle_low=2, exp_time_low=100, xrd_enable_high=False, num_trigger_high=3, cycle_high=1, exp_time_high=1000)
-        """
-        super().__init__(
-            start=start,
-            stop=stop,
-            scan_time=scan_time,
-            scan_duration=scan_duration,
-            motor=motor,
-            **kwargs,
-        )
-        self.break_enable_low = break_enable_low
-        self.break_time_low = break_time_low
-        self.cycle_low = cycle_low
-        self.break_enable_high = break_enable_high
-        self.break_time_high = break_time_high
-        self.cycle_high = cycle_high
-        self.exp_time = exp_time
-        self.n_of_trigger = n_of_trigger
-
-
-class XASAdvancedScan(XASSimpleScan):
-    """Class for the XAS advanced scan"""
-
-    scan_name = "xas_advanced_scan"
-    gui_config = {
-        "Movement Parameters": ["start", "stop"],
-        "Scan Parameters": ["scan_time", "scan_duration"],
-        "Spline Parameters": ["p_kink", "e_kink"],
-    }
-
-    def __init__(
-        self,
-        start: float,
-        stop: float,
-        scan_time: float,
-        scan_duration: float,
-        p_kink: float,
-        e_kink: float,
-        motor: DeviceBase = "mo1_bragg",
-        **kwargs,
-    ):
-        """The xas_advanced_scan is an oscillation motion on the mono motor.
-        Start and Stop define the energy range for the scan, scan_time is the
-        time for one scan cycle and scan_duration is the duration of the scan.
-        If scan duration is set to 0, the scan will run infinitely.
-        p_kink and e_kink add a kink to the motion profile to slow down in the
-        exafs region of the scan.
-
-        Args:
-            start (float): Start angle for the scan.
-            stop (float): Stop angle for the scan.
-            scan_time (float): Time for one oscillation .
-            scan_duration (float): Total duration of the scan.
-            p_kink (float): Position of the kink.
-            e_kink (float): Energy of the kink.
-            motor (DeviceBase, optional): Motor device to be used for the scan.
-                                          Defaults to "mo1_bragg".
-
-        Examples:
-            >>> scans.xas_advanced_scan(start=10000, stop=12000, scan_time=0.5, scan_duration=10, p_kink=50, e_kink=10500)
-        """
-        super().__init__(
-            start=start,
-            stop=stop,
-            scan_time=scan_time,
-            scan_duration=scan_duration,
-            motor=motor,
-            **kwargs,
-        )
-        self.p_kink = p_kink
-        self.e_kink = e_kink
-
-
-class XASAdvancedScanWithXRD(XASAdvancedScan):
-    """Class for the XAS advanced scan with XRD"""
-
-    scan_name = "xas_advanced_scan_with_xrd"
-    gui_config = {
-        "Movement Parameters": ["start", "stop"],
-        "Scan Parameters": ["scan_time", "scan_duration"],
-        "Spline Parameters": ["p_kink", "e_kink"],
-        "Low Energy Break": ["break_enable_low", "break_time_low", "cycle_low"],
-        "High Energy Break": ["break_enable_high", "break_time_high", "cycle_high"],
-        "XRD Triggers": ["exp_time", "n_of_trigger"],
-    }
-
-    def __init__(
-        self,
-        start: float,
-        stop: float,
-        scan_time: float,
-        scan_duration: float,
-        p_kink: float,
-        e_kink: float,
-        break_enable_low: bool,
-        break_time_low: float,
-        cycle_low: int,
-        break_enable_high: bool,
-        break_time_high: float,
-        cycle_high: float,
-        exp_time: float,
-        n_of_trigger: int,
-        motor: DeviceBase = "mo1_bragg",
-        **kwargs,
-    ):
-        """The xas_advanced_scan is an oscillation motion on the mono motor
-        with XRD triggering at low and high energy ranges.
-        Start and Stop define the energy range for the scan, scan_time is the time for
-        one scan cycle and scan_duration is the duration of the scan. If scan duration
-        is set to 0, the scan will run infinitely. p_kink and e_kink add a kink to the
-        motion profile to slow down in the exafs region of the scan.
-
-        Args:
-            start (float): Start angle for the scan.
-            stop (float): Stop angle for the scan.
-            scan_time (float): Time for one oscillation .
-            scan_duration (float): Total duration of the scan.
-            p_kink (float): Position of kink.
-            e_kink (float): Energy of the kink.
-            break_enable_low (bool): Enable breaks for the low energy range.
-            break_time_low (float): Break time for the low energy range.
-            cycle_low (int): Specify how often the triggers should be considered,
-                             every nth cycle for low
-            break_enable_high (bool): Enable breaks for the high energy range.
-            break_time_high (float): Break time for the high energy range.
-            cycle_high (int): Specify how often the triggers should be considered,
-                              every nth cycle for high
-            exp_time (float): Length of 1 trigger period in seconds
-            n_of_trigger (int): Amount of triggers to be fired during break
-            motor (DeviceBase, optional): Motor device to be used for the scan.
-                                          Defaults to "mo1_bragg".
-
-        Examples:
-            >>> scans.xas_advanced_scan_with_xrd(start=10000, stop=12000, scan_time=0.5, scan_duration=10, p_kink=50, e_kink=10500, xrd_enable_low=True, num_trigger_low=5, cycle_low=2, exp_time_low=100, xrd_enable_high=False, num_trigger_high=3, cycle_high=1, exp_time_high=1000)
-        """
-        super().__init__(
-            start=start,
-            stop=stop,
-            scan_time=scan_time,
-            scan_duration=scan_duration,
-            p_kink=p_kink,
-            e_kink=e_kink,
-            motor=motor,
-            **kwargs,
-        )
-        self.p_kink = p_kink
-        self.e_kink = e_kink
-        self.break_enable_low = break_enable_low
-        self.break_time_low = break_time_low
-        self.cycle_low = cycle_low
-        self.break_enable_high = break_enable_high
-        self.break_time_high = break_time_high
-        self.cycle_high = cycle_high
-        self.exp_time = exp_time
-        self.n_of_trigger = n_of_trigger

debye_bec/scans/nidaq_cont_scan.py

@@ -1,84 +0,0 @@
-"""This module contains the scan class for the nidaq of the Debye beamline for use in continuous mode."""
-
-import time
-from typing import Literal
-
-import numpy as np
-from bec_lib.device import DeviceBase
-from bec_lib.logger import bec_logger
-from bec_server.scan_server.scans import AsyncFlyScanBase
-
-logger = bec_logger.logger
-
-
-class NIDAQContinuousScan(AsyncFlyScanBase):
-    """Class for the nidaq continuous scan (without mono)"""
-
-    scan_name = "nidaq_continuous_scan"
-    scan_type = "fly"
-    scan_report_hint = "device_progress"
-    required_kwargs = []
-    use_scan_progress_report = False
-    pre_move = False
-    gui_config = {"Scan Parameters": ["scan_duration"], "Data Compression": ["compression"]}
-
-    def __init__(
-        self, scan_duration: float, daq: DeviceBase = "nidaq", compression: bool = False, **kwargs
-    ):
-        """The NIDAQ continuous scan is used to measure with the NIDAQ without moving the
-        monochromator or any other motor. The NIDAQ thus runs in continuous mode, with a
-        set scan_duration.
-
-        Args:
-            scan_duration (float): Duration of the scan.
-            daq (DeviceBase, optional): DAQ device to be used for the scan.
-                                          Defaults to "nidaq".
-        Examples:
-            >>> scans.nidaq_continuous_scan(scan_duration=10)
-        """
-        super().__init__(**kwargs)
-        self.scan_duration = scan_duration
-        self.daq = daq
-        self.start_time = 0
-        self.primary_readout_cycle = 1
-        self.scan_parameters["scan_duration"] = scan_duration
-        self.scan_parameters["compression"] = compression
-
-    def update_readout_priority(self):
-        """Ensure that NIDAQ is not monitored for any quick EXAFS."""
-        super().update_readout_priority()
-        self.readout_priority["async"].append("nidaq")
-
-    def prepare_positions(self):
-        """Prepare the positions for the scan."""
-        yield None
-
-    def pre_scan(self):
-        """Pre Scan action."""
-
-        self.start_time = time.time()
-        # Ensure parent class pre_scan actions to be called.
-        yield from super().pre_scan()
-
-    def scan_report_instructions(self):
-        """
-        Return the instructions for the scan report.
-        """
-        yield from self.stubs.scan_report_instruction({"device_progress": [self.daq]})
-
-    def scan_core(self):
-        """Run the scan core.
-        Kickoff the acquisition of the NIDAQ wait for the completion of the scan.
-        """
-        kickoff_status = yield from self.stubs.kickoff(device=self.daq)
-        kickoff_status.wait(timeout=5)  # wait for proper kickoff of device
-
-        complete_status = yield from self.stubs.complete(device=self.daq, wait=False)
-
-        while not complete_status.done:
-            # Readout monitored devices
-            yield from self.stubs.read(group="monitored", point_id=self.point_id)
-            time.sleep(self.primary_readout_cycle)
-            self.point_id += 1
-
-        self.num_pos = self.point_id

debye_bec/scans/scan_plugin_template.py

@@ -1,33 +0,0 @@
-"""
-SCAN PLUGINS
-
-All new scans should be derived from ScanBase. ScanBase provides various methods that can be customized and overriden
-but they are executed in a specific order:
-
-- self.initialize                        # initialize the class if needed
-- self.read_scan_motors                  # used to retrieve the start position (and the relative position shift if needed)
-- self.prepare_positions                 # prepare the positions for the scan. The preparation is split into multiple sub fuctions:
-    - self._calculate_positions          # calculate the positions
-    - self._set_positions_offset         # apply the previously retrieved scan position shift (if needed)
-    - self._check_limits                 # tests to ensure the limits won't be reached
-- self.open_scan                         # send an open_scan message including the scan name, the number of points and the scan motor names
-- self.stage                             # stage all devices for the upcoming acquisiton
-- self.run_baseline_readings             # read all devices to get a baseline for the upcoming scan
-- self.pre_scan                          # perform additional actions before the scan starts
-- self.scan_core                         # run a loop over all position
-    - self._at_each_point(ind, pos)      # called at each position with the current index and the target positions as arguments
-- self.finalize                          # clean up the scan, e.g. move back to the start position; wait everything to finish
-- self.unstage                           # unstage all devices that have been staged before
-- self.cleanup                           # send a close scan message and perform additional cleanups if needed
-"""
-
-# import time
-
-# import numpy as np
-
-# from bec_lib import bec_logger, messages
-# from bec_lib.endpoints import MessageEndpoints
-# from bec_server.scan_server.errors import ScanAbortion
-# from bec_server.scan_server.scans import FlyScanBase, RequestBase, ScanArgType, ScanBase
-
-# logger = bec_logger.logger

pyproject.toml

@@ -1,85 +0,0 @@
-[build-system]
-requires = ["hatchling"]
-build-backend = "hatchling.build"
-
-[project]
-name = "debye_bec"
-version = "0.0.0"
-description = "A plugin repository for BEC"
-requires-python = ">=3.11"
-classifiers = [
-    "Development Status :: 3 - Alpha",
-    "Programming Language :: Python :: 3",
-    "Topic :: Scientific/Engineering",
-]
-dependencies = [
-    "numpy",
-    "scipy",
-    "bec_lib",
-    "h5py",
-    "ophyd_devices",
-    "opencv-python==4.11.0.86",
-    "xrt",
-]
-
-[project.optional-dependencies]
-dev = [
-    "black",
-    "copier",
-    "isort",
-    "coverage",
-    "pylint",
-    "pytest",
-    "pytest-random-order",
-    "bec_server",
-]
-
-[project.entry-points."bec"]
-plugin_bec = "debye_bec"
-
-[project.entry-points."bec.deployment.device_server"]
-plugin_ds_startup = "debye_bec.deployments.device_server.startup:run"
-
-[project.entry-points."bec.file_writer"]
-plugin_file_writer = "debye_bec.file_writer"
-
-[project.entry-points."bec.scans"]
-plugin_scans = "debye_bec.scans"
-
-[project.entry-points."bec.scans.metadata_schema"]
-plugin_metadata_schema = "debye_bec.scans.metadata_schema"
-
-[project.entry-points."bec.ipython_client_startup"]
-plugin_ipython_client_pre = "debye_bec.bec_ipython_client.startup.pre_startup"
-plugin_ipython_client_post = "debye_bec.bec_ipython_client.startup"
-
-[project.entry-points."bec.widgets.auto_updates"]
-plugin_widgets_update = "debye_bec.bec_widgets.auto_updates"
-
-[project.entry-points."bec.widgets.user_widgets"]
-plugin_widgets = "debye_bec.bec_widgets.widgets"
-
-[tool.hatch.build.targets.wheel]
-include = ["*"]
-
-[tool.isort]
-profile = "black"
-line_length = 100
-multi_line_output = 3
-include_trailing_comma = true
-
-[tool.black]
-line-length = 100
-skip-magic-trailing-comma = true
-
-[tool.pylint.basic]
-# Good variable names regexes, separated by a comma. If names match any regex,
-# they will always be accepted
-good-names-rgxs = [
-    ".*scanID.*",
-    ".*RID.*",
-    ".*pointID.*",
-    ".*ID.*",
-    ".*_2D.*",
-    ".*_1D.*",
-]