x01dcandClaude Sonnet 5
c7fd0d3f1a
lsamx_center/lsamy_center have to be re-measured by hand for nearly every new sample (the rotation stage is tilted on top of lsamx/lsamy, so the effective axis position shifts with sample thickness/mounting). Add XrayEyeAlign.find_rotation_center()/lamni.rotation_center_calibration_start() to automate this using the existing X-ray eye GUI and lamni_move_to_scan_center interferometer-feedback move: - "isolated" sample: click particle centre at 0 and 180 deg, use the midpoint (angle-tilt-independent) as the rotation axis position. - "extended" sample: live 0->180->0 sweep for visual identification, single click, then a verification sweep and an accept/iterate prompt. Both write the result to lsamx/lsamy's "center" userParameter after confirmation. Heavily verbose logging throughout since this is fundamentally an interactive, hardware-in-the-loop procedure that can't be fully exercised by automated tests. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Getting Started with Testing using pytest
BEC is using the pytest framework. It can be installed via
pip install pytest
in your python environment.
We note that pytest is part of the optional-dependencies [dev] of the plugin package.
Introduction
Tests in this package should be stored in the tests directory.
We suggest to sort tests of different submodules, i.e. scans or devices in the respective folder structure, and to folow a naming convention of <test_module_name.py>.
It is mandatory for test files to begin with test_ for pytest to discover them.
To run all tests, navigate to the directory of the plugin from the command line, and run the command
pytest -v --random-order ./tests
Note, the python environment needs to be active.
The additional arg -v allows pytest to run in verbose mode which provides more detailed information about the tests being run.
The argument --random-order instructs pytest to run the tests in random order, which is the default in the CI pipelines.
Test examples
Writing tests can be quite specific for the given function. We recommend writing tests as isolated as possible, i.e. try to test single functions instead of full classes. A very useful class to enable isolated testing is MagicMock. In addition, we also recommend to take a look at the How-to guides from pytest.