x12saandClaude Opus 5.5
636eb55e96
lamni.xrayeye_refit([angles]) redoes the sinusoidal X-ray eye fit from the last alignment's points, leaving out the given angles (misclicks, sample barely visible). Prints each point's deviation from the new fit, shows the kept points on the GUI Fit tab and asks before replacing tomo_fit_xray_eye. The raw offsets are kept in the lamni_xeye_fit_data global var (cleared with the fit); archived alignments can be refitted via file=. Also clear omny_xray_gui.fit_params_x/y before submitting new alignment points, so a previous run's fit is not taken as the new one. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01ALDnH16dC6iyHjhe5Ey4w9
Getting Started with Testing using pytest
BEC is using the pytest framework. It can be installed via
pip install pytest
in your python environment.
We note that pytest is part of the optional-dependencies [dev] of the plugin package.
Introduction
Tests in this package should be stored in the tests directory.
We suggest to sort tests of different submodules, i.e. scans or devices in the respective folder structure, and to folow a naming convention of <test_module_name.py>.
It is mandatory for test files to begin with test_ for pytest to discover them.
To run all tests, navigate to the directory of the plugin from the command line, and run the command
pytest -v --random-order ./tests
Note, the python environment needs to be active.
The additional arg -v allows pytest to run in verbose mode which provides more detailed information about the tests being run.
The argument --random-order instructs pytest to run the tests in random order, which is the default in the CI pipelines.
Test examples
Writing tests can be quite specific for the given function. We recommend writing tests as isolated as possible, i.e. try to test single functions instead of full classes. A very useful class to enable isolated testing is MagicMock. In addition, we also recommend to take a look at the How-to guides from pytest.