ci: add ci file

.gitlab-ci.yml

@@ -0,0 +1,105 @@
+# This file is a template, and might need editing before it works on your project.
+# Official language image. Look for the different tagged releases at:
+# https://hub.docker.com/r/library/python/tags/
+image: $CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX/python:3.10
+
+workflow:
+  rules:
+    - if: $CI_PIPELINE_SOURCE == "schedule"
+    - if: $CI_PIPELINE_SOURCE == "web"
+    - if: $CI_PIPELINE_SOURCE == "merge_request_event"
+    - if: $CI_COMMIT_BRANCH && $CI_OPEN_MERGE_REQUESTS
+      when: never
+    - if: $CI_COMMIT_BRANCH
+
+include:
+  - template: Security/Secret-Detection.gitlab-ci.yml
+
+
+#commands to run in the Docker container before starting each job.
+before_script:
+  - pip install -e .[dev]
+
+# different stages in the pipeline
+stages:
+  - Formatter
+  - test # must be called test for security/secret-detection to work
+  - AdditionalTests
+  - Deploy
+
+pylint:
+  stage: Formatter
+  script:
+    - pip install pylint pylint-exit anybadge
+    - pip install -e .[dev]
+    - mkdir ./pylint
+    - pylint ./csaxs_bec --output-format=text --output=./pylint/pylint.log | tee ./pylint/pylint.log || pylint-exit $?
+    - PYLINT_SCORE=$(sed -n 's/^Your code has been rated at \([-0-9.]*\)\/.*/\1/p' ./pylint/pylint.log)
+    - anybadge --label=Pylint --file=pylint/pylint.svg --value=$PYLINT_SCORE 2=red 4=orange 8=yellow 10=green
+    - echo "Pylint score is $PYLINT_SCORE"
+  artifacts:
+    paths:
+      - ./pylint/
+    expire_in: 1 week
+
+pylint-check:
+  stage: Formatter
+  needs: []
+  allow_failure: true
+  before_script:
+    - pip install pylint pylint-exit anybadge
+    - apt-get update
+    - apt-get install -y bc
+  script:
+    # Identify changed Python files
+    - if [ "$CI_PIPELINE_SOURCE" == "merge_request_event" ]; then
+        TARGET_BRANCH_COMMIT_SHA=$(git rev-parse $CI_MERGE_REQUEST_TARGET_BRANCH_NAME);
+        CHANGED_FILES=$(git diff --name-only $SOURCE_BRANCH_COMMIT_SHA $TARGET_BRANCH_COMMIT_SHA | grep '\.py$' || true);
+      else
+        CHANGED_FILES=$(git diff --name-only $CI_COMMIT_BEFORE_SHA $CI_COMMIT_SHA | grep '\.py$' || true);
+      fi
+    - if [ -z "$CHANGED_FILES" ]; then echo "No Python files changed."; exit 0; fi
+
+    # Run pylint only on changed files
+    - mkdir ./pylint
+    - pylint $CHANGED_FILES --output-format=text . | tee ./pylint/pylint_changed_files.log || pylint-exit $?
+    - PYLINT_SCORE=$(sed -n 's/^Your code has been rated at \([-0-9.]*\)\/.*/\1/p' ./pylint/pylint_changed_files.log)
+    - echo "Pylint score is $PYLINT_SCORE"
+
+    # Fail the job if the pylint score is below 9
+    - if [ "$(echo "$PYLINT_SCORE < 9" | bc)" -eq 1 ]; then echo "Your pylint score is below the acceptable threshold (9)."; exit 1; fi
+  artifacts:
+    paths:
+      - ./pylint/
+    expire_in: 1 week
+
+secret_detection:
+  before_script:
+    - ''
+
+config_test:
+  stage: test 
+  script:
+    - ophyd_test --config ./csaxs_bec/device_configs/ --output ./config_tests
+  artifacts:
+    paths:
+      - ./config_tests
+    when: on_failure
+    expire_in: "30 days"
+  allow_failure: true
+
+
+pytest:
+  stage: test
+  script:
+    - pip install coverage
+    - coverage run --source=./csaxs_bec -m pytest -v --junitxml=report.xml --random-order --full-trace ./tests
+    - coverage report
+    - coverage xml
+  coverage: '/(?i)total.*? (100(?:\.0+)?\%|[1-9]?\d(?:\.\d+)?\%)$/'
+  artifacts:
+    reports:
+      junit: report.xml
+      coverage_report:
+        coverage_format: cobertura
+        path: coverage.xml

csaxs_bec/device_configs/bec_device_config_sastt.yaml

@@ -29,7 +29,7 @@ mokev:
   softwareTrigger: false
 mcs:
   description: Mcs scalar card for transmission readout
-  deviceClass: csaxs_bec.devices.epics.devices.MCSCsaxs
+  deviceClass: csaxs_bec.devices.epics.devices.MCScSAXS
   deviceConfig:
     prefix: 'X12SA-MCS:'
     mcs_config:
@@ -43,7 +43,7 @@ mcs:
   softwareTrigger: false
 eiger9m:
   description: Eiger9m HPC area detector 9M
-  deviceClass: csaxs_bec.devices.epics.devices.Eiger9MCsaxs
+  deviceClass: csaxs_bec.devices.epics.devices.Eiger9McSAXS
   deviceConfig:
     prefix: 'X12SA-ES-EIGER9M:'
   deviceTags:
@@ -138,7 +138,7 @@ ddg_fsh:
   softwareTrigger: false
 falcon:
   description: Falcon detector x-ray fluoresence 
-  deviceClass: csaxs_bec.devices.epics.devices.FalconCSAXS
+  deviceClass: csaxs_bec.devices.epics.devices.FalconcSAXS
   deviceConfig:
     prefix: 'X12SA-SITORO:'
   deviceTags:
@@ -150,7 +150,7 @@ falcon:
   softwareTrigger: false
 pilatus_2:
   description: Pilatus2 HPC area detector 300k 
-  deviceClass: csaxs_bec.devices.epics.devices.PilatusCSAXS
+  deviceClass: csaxs_bec.devices.epics.devices.PilatuscSAXS
   deviceConfig:
     prefix: 'X12SA-ES-PILATUS300K:'
   deviceTags: