no real change

base.py

@@ -5,7 +5,6 @@ from collections import OrderedDict
 from datetime import datetime
 import getpass
 import h5py
-import inspect
 import logging
 import numpy as np
 import platform
@@ -58,6 +57,7 @@ CENTRAL_WIDGET_MINIMUM_WIDTH =  1240
 SLS_CENTRAL_WIDGET_MINIMUM_HEIGHT = 840
 SLS_CENTRAL_WIDGET_MINIMUM_WIDTH = 940
 
+
 class BaseWindow(QMainWindow):
     """ BaseWindow
     """
@@ -129,8 +129,8 @@ class BaseWindow(QMainWindow):
 
                                 if os.access(_dirname, os.W_OK):
 
-                                    all_fig_data[canvas][idx].savefig(save_dest)
+                                    all_fig_data[canvas][idx].savefig(
-
+                                        save_dest)
 
                                 elif not write_message_fired:
 
@@ -145,38 +145,33 @@ class BaseWindow(QMainWindow):
                                         _line(), _mess, {})
                                     write_message_fired = True
 
-                         
                         if not write_message_fired:
                             attach_files.append(save_dest)
 
-
-          
-
             try:
                 resultsSeq = self.settings.data["GUI"]["resultsSeq"]
                 titleSeq = self.settings.data["GUI"]["subResultsTabTitle"]
                 if self.all_data:
                     fig_data = self.all_data['Figure data']
-                    for i, (nfig, name) in enumerate(zip(resultsSeq, titleSeq)):
+                    for i, (nfig, name) in enumerate(
+                            zip(resultsSeq, titleSeq)):
                         print(i, nfig, name, flush=True)
                         print(fig_data, flush=True)
                         extract_and_attach(i, nfig, name, fig_data)
             except KeyError as ex:
                 pass
 
-
             try:
                 resultsSeq = self.settings.data["GUI2"]["resultsSeq"]
                 titleSeq = self.settings.data["GUI2"]["subResultsTabTitle"]
                 if self.all_data_2:
                     fig_data = self.all_data_2['Figure data']
-                    for i, (nfig, name) in enumerate(zip(resultsSeq, titleSeq)):
+                    for i, (nfig, name) in enumerate(
+                            zip(resultsSeq, titleSeq)):
                         extract_and_attach(i, nfig, name, fig_data)
             except KeyError as ex:
                 pass
 
-
-
             # Not so nice.. send a signal instead?
             if attach_files:
                 self.parent.attach_files = attach_files
@@ -263,7 +258,7 @@ class BaseWindow(QMainWindow):
                         self.parent.add_to_hdf(dataH5, proc=True, raw=True)
                         self.parent.hdf_save_completed = True
 
-                        _mess = "Processed data saved to {}".format(
+                        _mess = "Data saved to {}".format(
                             self.parent.hdf_filename)
                         self.parent.trigger_log_message.emit(
                             MsgSeverity.INFO.name, _pymodule, _line(), _mess,
@@ -275,7 +270,6 @@ class BaseWindow(QMainWindow):
                         MsgSeverity.ERROR.name, _pymodule, _line(), _mess, {})
                     self.parent.hdf_save_completed = False
 
-
     class HDFThread(QThread):
         """Thread for hdf analysis
         """
@@ -351,7 +345,6 @@ class BaseWindow(QMainWindow):
                 self.parent.trigger_log_message.emit(
                     MsgSeverity.ERROR.name, _pymodule, _line(), mess, {})
 
-
     class AnalysisThread(QThread):
         """Analysis thread
         """
@@ -379,13 +372,16 @@ class BaseWindow(QMainWindow):
         def run(self):
             """Run thread
             """
-            print("RUN IN BASE CLASS", flush=True)
+            print("RUN ANLYSIS THREAD FROM WITHIN IN BASE CLASS", flush=True)
+
+            # Reset all_data fro parent
+            self.parent.all_data = None
 
             all_dict = self.analysis_procedure.measure_and_analyze(
                 self.input_parameters)
 
             # Emit results
-            if all_dict:
+            if all_dict is not None:
                 self.trigger_thread_event.emit(all_dict)
                 mess = self.messages['success']
                 self.parent.trigger_log_message.emit(
@@ -395,7 +391,6 @@ class BaseWindow(QMainWindow):
                 self.parent.trigger_log_message.emit(
                     MsgSeverity.WARN.name, _pymodule, _line(), mess, {})
 
-
     def __init__(self, parent=None, pymodule=None, appversion=None, title="",
                  user_mode=UserMode.OPERATION, facility=Facility.SwissFEL,
                  extended=True, has_optics=True, has_procedure=True):
@@ -412,7 +407,6 @@ class BaseWindow(QMainWindow):
         self.user_mode = user_mode
         self.appname, self.appext = self.pymodule.split(".")
 
-       
         print("=============================================")
         print("Starting {0} at: {1}".format(self.appname, datetime.now()))
         print("User: {0} Host: {1}".format(os.getlogin(), os.uname()[1]))
@@ -498,7 +492,6 @@ class BaseWindow(QMainWindow):
 
         self.hdf_save_completed = False if self.autopost_hdf else True
 
-
         self.all_input_parameters = {}  # gui
         self.all_input_labels = {}  # gui
         self.all_expert_parameters = {}  # gui
@@ -526,8 +519,8 @@ class BaseWindow(QMainWindow):
             print(("Base class without user supplied AnalysisProcedure class."
                    + " import Error:"), e, flush=True)
 
-        ##self.trigger_elog_entry.connect(self.receive_elog_notification)
+        # self.trigger_elog_entry.connect(self.receive_elog_notification)
-        ##self.trigger_hdf_save.connect(self.save_to_hdf)
+        # self.trigger_hdf_save.connect(self.save_to_hdf)
 
         self.msg_severity_qcolor = {
             MsgSeverity.FATAL: QColor(
@@ -615,7 +608,6 @@ class BaseWindow(QMainWindow):
         self.show_log_message(MsgSeverity.INFO.name, _pymodule, _line(),
                               "Application configured")
 
-
     def read_input_parameters(self):
 
         for key, dictval in self.settings.data["Parameters"].items():
@@ -659,7 +651,6 @@ class BaseWindow(QMainWindow):
             self.all_input_labels[key] = dictval["data"]["text"]
             #print(key, self.settings.data["Parameters"][key]["flag"])
 
-            
         if "Expert" not in self.settings.data:
             return
 
@@ -704,7 +695,6 @@ class BaseWindow(QMainWindow):
                 self.expert_labels[key] = dictval["data"]["text"]
             self.all_expert_labels[key] = dictval["data"]["text"]
 
-
     def init_toolbar(self):
         """ Prepare toolbar
         """
@@ -812,19 +802,20 @@ class BaseWindow(QMainWindow):
         exit_toolbar.addWidget(spacer_wgt)
         #_qsize = exit_toolbar.iconSize()
         #print("qsize", _qsize)
-        true_list = [self.autopost_epics, self.autopost_hdf, self.autopost_elog]
+        true_list = [
+            self.autopost_epics,
+            self.autopost_hdf,
+            self.autopost_elog]
 
         if true_list.count(True) > 1:
-            exit_toolbar.setIconSize(QSize(true_list.count(True)*30+10, 24))
+            exit_toolbar.setIconSize(
+                QSize(true_list.count(True) * 30 + 10, 24))
             # exit_toolbar.setIconSize(_qsize)
             self.add_actions(exit_toolbar, (
                 save_all_action, "Space", None, "Space", quit_action))
         else:
             self.add_actions(exit_toolbar, (quit_action,))
 
-        
-
-
     def combine_save_icons(self):  # epics=False, hdf=False, elog=False):
 
         epics = self.autopost_epics
@@ -868,8 +859,8 @@ class BaseWindow(QMainWindow):
         painter.end()
         return combinedIcon
 
+    # Actions
 
-    ################# Actions
     def add_actions(self, target, actions):
         """ Add to toolbar
         """
@@ -904,8 +895,6 @@ class BaseWindow(QMainWindow):
             action.setCheckable(True)
         return action
 
-
-
     def verify_close_event(self):
         """ Overrides QMainWindow method
         """
@@ -1031,7 +1020,6 @@ class BaseWindow(QMainWindow):
         qdialog.setLayout(layout)
         qdialog.show()
 
-
     # def save_to_hdf_started(self):
     #    QApplication.processEvents()
     # def save_to_hdf_finished(self):
@@ -1056,14 +1044,12 @@ class BaseWindow(QMainWindow):
         # enable signal
         # self.gui_frame.autopost_save.blockSignals(False)
 
-
     def set_new_hdf_filename(self, time_in_seconds=None,
                              reanalysis_time_in_seconds=None):
 
         self.hdf_filename = (self.hdf_dest + self.add_date_to_path(
             time_in_seconds, reanalysis_time_in_seconds) + ".h5")
 
-
     def add_date_to_path(self, time_in_seconds=None,
                          reanalysis_time_in_seconds=None):
 
@@ -1091,7 +1077,6 @@ class BaseWindow(QMainWindow):
         else:
             return str(self.appname + "_" + _date_label)
 
-
     def verify_save_to_hdf(self):
         """ To be called by user from save_to_hdf
         A return of True tells the user to continue to next step
@@ -1122,7 +1107,6 @@ class BaseWindow(QMainWindow):
             QApplication.processEvents()
             return False
 
-
         if self.hdf_save_completed:
             _mess = "Data previously saved to hdf:\n{0}".format(
                 self.hdf_filename)
@@ -1131,10 +1115,8 @@ class BaseWindow(QMainWindow):
             QApplication.processEvents()
             return False
 
-
         return True
 
-
     def add_to_hdf(self, dataH5=None, proc=True, raw=False):
         """ Abstract method to be overwritten by user. Optional.
         """
@@ -1164,7 +1146,6 @@ class BaseWindow(QMainWindow):
         )
         QM.exec()
 
-
     def add_pvs_to_hdf(self, dataH5, top_group="experiment", pv_list=None,
                        from_hdf=False):
 
@@ -1192,7 +1173,6 @@ class BaseWindow(QMainWindow):
                             {})
             return isOK
 
-                                
         if from_hdf:
             return isOK
 
@@ -1218,8 +1198,6 @@ class BaseWindow(QMainWindow):
                     MsgSeverity.WARN.name, _pymodule, _line(), _mess, {})
         return isOK
 
-
-
     def add_general_to_hdf(self, dataH5):
         isOK = True
         user_dict = {}
@@ -1270,7 +1248,6 @@ class BaseWindow(QMainWindow):
                     MsgSeverity.WARN.name, _pymodule, _line(), _mess, {})
         return isOK
 
-
     @Slot()
     def save_to_hdf_dialog(self):
         """ This uses the widget interface to allow the user to enter
@@ -1292,7 +1269,6 @@ class BaseWindow(QMainWindow):
                         'Reanalysis time in seconds']
             self.set_new_hdf_filename(ts_in_seconds, now_in_seconds)
 
-           
             input_options['Destination'] = self.hdf_filename
             input_options['Time in seconds'] = self.all_data['Ambient data'][
                 'Time in seconds']
@@ -1300,7 +1276,6 @@ class BaseWindow(QMainWindow):
         self.hdf_dialog = QSaveHDF(self, input_options=input_options,
                                    from_dialog=True)
 
-               
     def verify_send_to_elog(self):
 
         if self.analysis_thread is not None:
@@ -1356,14 +1331,12 @@ class BaseWindow(QMainWindow):
         _attach_files = []
         _message = ""
 
-        
         QSendToELOG(self, logbook=_logbook, categoryIdx=_category_idx,
                     domainIdx=_domain_idx, sectionIdx=_section_idx,
                     title=self.title, message=_message,
                     attachFile=_attach_files)
         QApplication.processEvents()
 
-
     def initiate_cycling(self, pv_list=[]):
         if not pv_list:
             return False
@@ -1432,7 +1405,6 @@ class BaseWindow(QMainWindow):
                 qm.warning(self, "Set Optics", _mess, QMessageBox.Ok)
                 break
 
-
     @Slot()
     def set_optics(self):
         """ Abstract method to be overwritten by user
@@ -1455,7 +1427,6 @@ class BaseWindow(QMainWindow):
         )
         QM.exec()
 
-
     def verify_save_to_epics(self):
         """ To be called by user from save_to_epics
         """
@@ -1510,7 +1481,6 @@ class BaseWindow(QMainWindow):
         )
         QM.exec()
 
-
     def send_to_log_window(self, pv_list: list = [], status: int = 1,
                            status_list: list = [], operation: str = 'set/get',
                            pymodule=_pymodule, line: int = _line()):
@@ -1530,11 +1500,9 @@ class BaseWindow(QMainWindow):
                      "See Log window").format(ibad, len(status_list))
             self.statusbar.showMessage(_mess)
 
-
     def send_to_epics(self, pv_dict: dict = None, pv_names: list = None,
                       pv_values: list = None) -> (int, list):
 
-
         if pv_dict is not None:
             pv_values = []
             pv_names = list(pv_dict.keys())
@@ -1564,15 +1532,15 @@ class BaseWindow(QMainWindow):
         status = self.cyca.ICAFE_NORMAL
         status_list = []
         try:
-            status, status_list = self.cafe.setCompoundList(pv_names, pv_values)
+            status, status_list = self.cafe.setCompoundList(
-        except:
+                pv_names, pv_values)
+        except BaseException:
             print("Exception raised in cafe.setCompoundList", flush=True)
             status = self.cyca.ECAFE_BADTYPE
             for pv, val in zip(pv_names, pv_values):
                 print("pv/val", pv, val, flush=True)
                 status_list.append(self.ECAFE_BADTYPE)
 
-
         if status != self.cyca.ICAFE_NORMAL:
             ibad = 0
             for _status, _pv in zip(status_list, pv_names):
@@ -1674,7 +1642,7 @@ class BaseWindow(QMainWindow):
             self.screenshot_titles.clear()
             self.screenshot_items.clear()
 
-    ############################### Init
+    # Init
     def init_statusbar_wgt(self):
         """ Configure statusbar
         """
@@ -1771,9 +1739,9 @@ class BaseWindow(QMainWindow):
         # Fill all data from HDF file
         ###hdf_all_data = self.load_hdf_file()
 
-        ###if not hdf_all_data:
+        # if not hdf_all_data:
-        ###    self.hdf_thread_finished()
+        # self.hdf_thread_finished()
-        ###    return
+        # return
 
         self.hdf_thread = self.HDFThread(
             self, self.analysis_procedure, all_data=None)  # =hdf_all_data
@@ -1786,8 +1754,8 @@ class BaseWindow(QMainWindow):
         self.hdf_thread.start()
         QApplication.processEvents()
 
-
     # To be overloaded by user
+
     def verify_analysis_preconditions(self):
         return True
 
@@ -1818,7 +1786,6 @@ class BaseWindow(QMainWindow):
         if not self.verify_analysis_preconditions():
             return
 
-      
         self.analysis_thread = self.AnalysisThread(
             self, self.analysis_procedure, self.input_parameters)
 
@@ -1828,11 +1795,9 @@ class BaseWindow(QMainWindow):
         self.analysis_thread.started.connect(self.analysis_thread_started)
         self.analysis_thread.finished.connect(self.analysis_thread_finished)
 
-       
         self.analysis_thread.start()
         QApplication.processEvents()
 
-   
     @Slot()
     def analysis_thread_started(self):
         """ Change state of widgets when measuring
@@ -1856,7 +1821,6 @@ class BaseWindow(QMainWindow):
         self.gui_frame.in_hdf_measurement_procedure()
         QApplication.processEvents()
 
-
     @Slot()
     def hdf_thread_finished(self):
         """ Reset widgets to intial pre-measurement state
@@ -1865,7 +1829,6 @@ class BaseWindow(QMainWindow):
         QApplication.processEvents()
         #print("Thread Finished")
 
-
     @Slot(dict)
     def receive_analysis_results(self, all_dict):
         self.all_data = all_dict
@@ -1880,7 +1843,7 @@ class BaseWindow(QMainWindow):
             try:
                 results_data = all_dict['Processed data']['Results']
                 self.gui_frame.send_to_results_output_wgt(results_data)
-            except:
+            except BaseException:
                 pass
 
         #print("IDX+++", self.gui_frame.central_tab_widget.indexOf('Emittance'), flush=True)
@@ -1894,7 +1857,11 @@ class BaseWindow(QMainWindow):
             # for j in range(len(self.gui_frame.level1_tab_wgt)):
             j = self.gui_frame.central_tab_widget.currentIndex()
             for i in range(self.gui_frame.level1_tab_wgt[j].count()):
-                print(j, i, self.gui_frame.level1_tab_wgt[j].tabText(i), flush=True)
+                print(
+                    j,
+                    i,
+                    self.gui_frame.level1_tab_wgt[j].tabText(i),
+                    flush=True)
                 if self.gui_frame.level1_tab_wgt[j].tabText(i) == "Plots":
                     self.gui_frame.level1_tab_wgt[j].setCurrentIndex(i)
                 else:
@@ -1902,14 +1869,20 @@ class BaseWindow(QMainWindow):
         else:
 
             for i in range(self.gui_frame.central_tab_widget.count()):
-                print(i, self.gui_frame.central_tab_widget.tabText(i), flush=True)
+                print(
+                    i,
+                    self.gui_frame.central_tab_widget.tabText(i),
+                    flush=True)
                 if self.gui_frame.central_tab_widget.tabText(i) == "Plots":
                     self.gui_frame.central_tab_widget.setCurrentIndex(i)
                 else:
                     pass
 
             for i in range(self.gui_frame.measurement_tab_wgt.count()):
-                print(i, self.gui_frame.measurement_tab_wgt.tabText(i), flush=True)
+                print(
+                    i,
+                    self.gui_frame.measurement_tab_wgt.tabText(i),
+                    flush=True)
                 if self.gui_frame.measurement_tab_wgt.tabText(i) == "Plots":
                     self.gui_frame.measurement_tab_wgt.setCurrentIndex(i)
                 else:
@@ -1936,7 +1909,6 @@ class BaseWindow(QMainWindow):
         # self.trigger_progressbar.emit(PROGRESS_THREAD_ABORTING)
         QApplication.processEvents()
 
-
     @Slot(str, str, int, str, dict)
     def receive_log_message(self, severity, module, line, message, options={}):
         '''Receive message from thread for routing to log window'''
@@ -2015,7 +1987,6 @@ class BaseWindow(QMainWindow):
         QApplication.processEvents()
         time.sleep(0.0001)
 
-
     def initialize_application(self, appname=_appname, delay=None,
                                facility=Facility.SwissFEL):
         """
@@ -2104,12 +2075,10 @@ class BaseWindow(QMainWindow):
             #pSplashNotice = QCheckBox(self.splash_screen);
             # pSplashNotice.setChecked(Qt.Checked)
 
-
             self.splash_progressbar = QProgressBar(self.splash_screen)
             self.splash_timer = QTimer()
             self.splash_screen.show()
 
-
             # Custom progress bar stylesheet
             progressbar_stylesheet = """
             QProgressBar:horizontal {
@@ -2159,7 +2128,6 @@ class BaseWindow(QMainWindow):
 
         return self.splash_screen
 
-
     def initialize_finished(self, myapp):
         self.splash_timer.stop()
         self.splash_progressbar.setValue(100)
@@ -2180,8 +2148,6 @@ class BaseWindow(QMainWindow):
             Qt.AlignmentFlag(Qt.AlignCenter | Qt.AlignTop))
         self.splash_screen.finish(myapp)
 
-
-
     def check_status_list(self, pymodule: str = _pymodule,
                           operation: str = "channel access",
                           pv_list: list = None, status_list: list = None,
@@ -2200,7 +2166,6 @@ class BaseWindow(QMainWindow):
                 if stat is None:
                     status_list[i] = self.cafe.getStatus(pv)
 
-
         brk = ("------------------------------------------------------" +
                "------------------------------------------------------")
         self.trigger_log_message.emit(
@@ -2230,7 +2195,6 @@ class BaseWindow(QMainWindow):
 
         return status_list
 
-
     def check_status(self, pymodule: str = _pymodule,
                      operation: str = "channel access",
                      pv: str = None, stat: int = None,
@@ -2238,7 +2202,7 @@ class BaseWindow(QMainWindow):
 
         if not pv:
             return
-        if stat == None:
+        if stat is None:
             stat = self.cafe.getStatus(pv)
 
         if stat != self.cyca.ICAFE_NORMAL: