#!/usr/bin/env python from time import sleep from collections import deque import numpy as np import scipy.signal from zoetrope import aniplot as plt from bstrd import BS, bsstream plt.blit = False # config cam_name = "SARES11-XMI125-C4P1.jet_projection" #xmin = 0 #xmax = 400 #ymin = 400 #ymax = 700 #proj_axis = 0 um_per_px = 2.28 buffer_length = 1000 def get_data(cam): jet = 0 for i in range(1): jet += cam.get() next(bsstream) proj = jet return proj def find_spacing(py, extend=5): py -= py.mean() if extend > 1: py = np.concatenate((py, np.zeros(len(py) * extend))) spectrum = np.abs(np.fft.fft(py)) freq = np.fft.fftfreq(len(spectrum)) which = (freq > 0.005) spectrum = spectrum[which] freq = freq[which] index_peaks = scipy.signal.find_peaks(spectrum)[0] peaks_pos = freq[index_peaks] peak_height = spectrum[index_peaks] cut_freq = peaks_pos[np.argmax(peak_height)] return freq, spectrum, cut_freq def make_xs(arr): return np.arange(len(arr)) # create channel cam = BS(cam_name) proj = get_data(cam) pixel_proj = make_xs(proj) plt.fig.set_figheight(12) plt.fig.set_figwidth(9) plt.suptitle(cam_name) plt.subplot(311) plt.title("projection") pln_proj = plt.plot(proj, pixel_proj) plt.grid() plt.subplot(312) plt.title("FFT") plt.xlabel("frequency in 1/pixel") pln_fft_spec = plt.plot([0]) plt.xlim(0,0.2) plt.grid() pln_fft_cut = plt.plot([0]) plt.subplot(313) plt.title(f"spacing assuming {um_per_px} μm per pixel") pln_spac = plt.plot([0], 'o') pln_spac.ax.axhline(y=80, color='r') plt.ylim(0,250) plt.grid() plt.tight_layout() spacings = deque(maxlen=buffer_length) for counter in plt.show(): print(counter) next(bsstream) proj = get_data(cam) pln_proj.set(proj, pixel_proj) freq, spectrum, cut_freq = find_spacing(proj, extend=10) spac = um_per_px / cut_freq spacings.append(spac) pln_spac.set(make_xs(spacings), spacings) pln_fft_spec.set(freq, spectrum) pln_fft_cut.set([cut_freq]*2, [spectrum.min(), spectrum.max()]) pln_fft_spec.ax.set_title(f"FFT\ncurrent spacing: {spac:.1f} μm") # this, I need to move into the library ps = [pln_proj, pln_spac, pln_fft_spec] for p in ps: p.ax.relim() p.ax.autoscale_view() bsstream.close()