Ready for release

runOpticsTools.sh

@@ -2,12 +2,27 @@
 
 BASEDIR=$(dirname $0)
 echo "Script location: ${BASEDIR}"
+
+while :
+do
+  echo $1
+  case "$1" in
+    "-offline") offline=$2;;
+    "-phase") phase=$2;;
+  esac
+  shift
+done
+echo "-offline"
+echo $offline
+echo "-phase"
+echo $phase
+
 # runs in the sfbd conda environment SLIC
 source  /sf/bd/packages/conda/etc/profile.d/conda.sh
 conda activate slic
 export PYTHONPATH=/sf/bd/packages/slic:/sf/bd/packages/sfbd:/sf/bd/packages/bstrd:/sf/bd/packages/pyrealta:/sf/bd/packages/onlinemodel:$PYTHONPATH
 cd $BASEDIR
-python OpticsTools.py
+#python OpticsTools.py ${:1}
 # needs command line arguments
 #-debug 1 -offline 0