From 9e4cb435d37ed76b833a03a5effe6697d52d1f77 Mon Sep 17 00:00:00 2001
From: Sven <sven.reiche@psi.ch>
Date: Mon, 26 Jan 2026 11:04:58 +0100
Subject: [PATCH] Fixed to filter for non-existing elements when initializing
 from a setting file

---
 .idea/ElegantTools.iml |   2 +-
 .idea/workspace.xml    | 109 ++++++++++++++++++++++++++++-------------
 model.py               |   3 ++
 track.py               |   2 +-
 ui/ElegantPlotGui.py   |   2 +-
 ui/ElegantToolsGui.py  |   4 +-
 6 files changed, 82 insertions(+), 40 deletions(-)

diff --git a/.idea/ElegantTools.iml b/.idea/ElegantTools.iml
index b5978d0..091f81f 100644
--- a/.idea/ElegantTools.iml
+++ b/.idea/ElegantTools.iml
@@ -2,7 +2,7 @@
 <module type="PYTHON_MODULE" version="4">
   <component name="NewModuleRootManager">
     <content url="file://$MODULE_DIR$" />
-    <orderEntry type="jdk" jdkName="python3" jdkType="Python SDK" />
+    <orderEntry type="jdk" jdkName="$USER_HOME$/miniforge3/envs/sfbd" jdkType="Python SDK" />
     <orderEntry type="sourceFolder" forTests="false" />
   </component>
 </module>
\ No newline at end of file
diff --git a/.idea/workspace.xml b/.idea/workspace.xml
index 1c8b6db..5cfa3be 100644
--- a/.idea/workspace.xml
+++ b/.idea/workspace.xml
@@ -4,18 +4,13 @@
     <option name="autoReloadType" value="SELECTIVE" />
   </component>
   <component name="ChangeListManager">
-    <list default="true" id="0efcf7ff-c00b-4b53-9800-80ad65aeaff9" name="Changes" comment="Plotting of elegant results implemented">
-      <change afterPath="$PROJECT_DIR$/.idea/inspectionProfiles/profiles_settings.xml" afterDir="false" />
-      <change afterPath="$PROJECT_DIR$/.idea/modules.xml" afterDir="false" />
-      <change afterPath="$PROJECT_DIR$/.idea/vcs.xml" afterDir="false" />
-      <change afterPath="$PROJECT_DIR$/.idea/workspace.xml" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/ElegantTools.py" beforeDir="false" afterPath="$PROJECT_DIR$/ElegantTools.py" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/lattice.py" beforeDir="false" afterPath="$PROJECT_DIR$/lattice.py" afterDir="false" />
+    <list default="true" id="0efcf7ff-c00b-4b53-9800-80ad65aeaff9" name="Changes" comment="First release of ElegantTools">
+      <change beforePath="$PROJECT_DIR$/.idea/ElegantTools.iml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/ElegantTools.iml" afterDir="false" />
+      <change beforePath="$PROJECT_DIR$/.idea/workspace.xml" beforeDir="false" afterPath="$PROJECT_DIR$/.idea/workspace.xml" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/model.py" beforeDir="false" afterPath="$PROJECT_DIR$/model.py" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/plot.py" beforeDir="false" afterPath="$PROJECT_DIR$/plot.py" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/track.py" beforeDir="false" afterPath="$PROJECT_DIR$/track.py" afterDir="false" />
+      <change beforePath="$PROJECT_DIR$/ui/ElegantPlotGui.py" beforeDir="false" afterPath="$PROJECT_DIR$/ui/ElegantPlotGui.py" afterDir="false" />
       <change beforePath="$PROJECT_DIR$/ui/ElegantToolsGui.py" beforeDir="false" afterPath="$PROJECT_DIR$/ui/ElegantToolsGui.py" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/ui/ElegantToolsGui.ui" beforeDir="false" afterPath="$PROJECT_DIR$/ui/ElegantToolsGui.ui" afterDir="false" />
     </list>
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
@@ -32,6 +27,10 @@
   <component name="Git.Settings">
     <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
   </component>
+  <component name="McpProjectServerCommands">
+    <commands />
+    <urls />
+  </component>
   <component name="ProjectColorInfo">{
   &quot;associatedIndex&quot;: 3
 }</component>
@@ -40,31 +39,38 @@
     <option name="hideEmptyMiddlePackages" value="true" />
     <option name="showLibraryContents" value="true" />
   </component>
-  <component name="PropertiesComponent">{
-  &quot;keyToString&quot;: {
-    &quot;ModuleVcsDetector.initialDetectionPerformed&quot;: &quot;true&quot;,
-    &quot;Python.ElegantTools.executor&quot;: &quot;Run&quot;,
-    &quot;RunOnceActivity.ShowReadmeOnStart&quot;: &quot;true&quot;,
-    &quot;RunOnceActivity.git.unshallow&quot;: &quot;true&quot;,
-    &quot;SHELLCHECK.PATH&quot;: &quot;I do mind&quot;,
-    &quot;git-widget-placeholder&quot;: &quot;master&quot;,
-    &quot;last_opened_file_path&quot;: &quot;/home/reiche/Desktop/Software/ElegantTools&quot;,
-    &quot;node.js.detected.package.eslint&quot;: &quot;true&quot;,
-    &quot;node.js.detected.package.tslint&quot;: &quot;true&quot;,
-    &quot;node.js.selected.package.eslint&quot;: &quot;(autodetect)&quot;,
-    &quot;node.js.selected.package.tslint&quot;: &quot;(autodetect)&quot;,
-    &quot;nodejs_package_manager_path&quot;: &quot;npm&quot;,
-    &quot;settings.editor.selected.configurable&quot;: &quot;com.intellij.pycharm.community.ide.impl.configuration.PythonContentEntriesConfigurable&quot;,
-    &quot;vue.rearranger.settings.migration&quot;: &quot;true&quot;
+  <component name="PropertiesComponent"><![CDATA[{
+  "keyToString": {
+    "ModuleVcsDetector.initialDetectionPerformed": "true",
+    "Python.ElegantTools.executor": "Run",
+    "RunOnceActivity.MCP Project settings loaded": "true",
+    "RunOnceActivity.ShowReadmeOnStart": "true",
+    "RunOnceActivity.TerminalTabsStorage.copyFrom.TerminalArrangementManager.252": "true",
+    "RunOnceActivity.git.unshallow": "true",
+    "RunOnceActivity.typescript.service.memoryLimit.init": "true",
+    "SHELLCHECK.PATH": "I do mind",
+    "ai.playground.ignore.import.keys.banner.in.settings": "true",
+    "com.intellij.ml.llm.matterhorn.ej.ui.settings.DefaultModelSelectionForGA.v1": "true",
+    "git-widget-placeholder": "main",
+    "junie.onboarding.icon.badge.shown": "true",
+    "last_opened_file_path": "/home/reiche/Codes/Python/Modelling/ElegantTools",
+    "node.js.detected.package.eslint": "true",
+    "node.js.detected.package.tslint": "true",
+    "node.js.selected.package.eslint": "(autodetect)",
+    "node.js.selected.package.tslint": "(autodetect)",
+    "nodejs_package_manager_path": "npm",
+    "settings.editor.selected.configurable": "com.jetbrains.python.configuration.PyActiveSdkModuleConfigurable",
+    "to.speed.mode.migration.done": "true",
+    "vue.rearranger.settings.migration": "true"
   }
-}</component>
+}]]></component>
   <component name="RecentsManager">
     <key name="CopyFile.RECENT_KEYS">
-      <recent name="$PROJECT_DIR$" />
+      <recent name="$PROJECT_DIR$/Runs" />
       <recent name="$PROJECT_DIR$/OnlineModelLattices" />
+      <recent name="$PROJECT_DIR$" />
       <recent name="$PROJECT_DIR$/ReferenceDistribution" />
       <recent name="$PROJECT_DIR$/rsc" />
-      <recent name="$PROJECT_DIR$/.." />
     </key>
     <key name="MoveFile.RECENT_KEYS">
       <recent name="$PROJECT_DIR$/ReferenceDistribution" />
@@ -82,11 +88,13 @@
         <env name="PYTHONPATH" value="/sf/bd/packages/onlinemodel:/sf/bd/packages/sfbd:$PYTHONPATH" />
       </envs>
       <option name="SDK_HOME" value="" />
+      <option name="SDK_NAME" value="sfbd" />
       <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
-      <option name="IS_MODULE_SDK" value="true" />
+      <option name="IS_MODULE_SDK" value="false" />
       <option name="ADD_CONTENT_ROOTS" value="true" />
       <option name="ADD_SOURCE_ROOTS" value="true" />
       <EXTENSION ID="PythonCoverageRunConfigurationExtension" runner="coverage.py" />
+      <option name="RUN_TOOL" value="" />
       <option name="SCRIPT_NAME" value="ElegantTools.py" />
       <option name="PARAMETERS" value="" />
       <option name="SHOW_COMMAND_LINE" value="false" />
@@ -100,8 +108,8 @@
   <component name="SharedIndexes">
     <attachedChunks>
       <set>
-        <option value="bundled-js-predefined-d6986cc7102b-09060db00ec0-JavaScript-PY-251.26927.90" />
-        <option value="bundled-python-sdk-41e8cd69c857-64d779b69b7a-com.jetbrains.pycharm.pro.sharedIndexes.bundled-PY-251.26927.90" />
+        <option value="bundled-js-predefined-d6986cc7102b-9b0f141eb926-JavaScript-PY-253.29346.308" />
+        <option value="bundled-python-sdk-ca5e2b39c7df-6e1f45a539f7-com.jetbrains.pycharm.pro.sharedIndexes.bundled-PY-253.29346.308" />
       </set>
     </attachedChunks>
   </component>
@@ -113,7 +121,10 @@
       <option name="presentableId" value="Default" />
       <updated>1752559006350</updated>
       <workItem from="1752559007381" duration="52441000" />
-      <workItem from="1753184384816" duration="37200000" />
+      <workItem from="1753184384816" duration="49046000" />
+      <workItem from="1753433608932" duration="2368000" />
+      <workItem from="1753700276583" duration="1239000" />
+      <workItem from="1769421276584" duration="540000" />
     </task>
     <task id="LOCAL-00001" summary="Initial Commit">
       <option name="closed" value="true" />
@@ -163,18 +174,46 @@
       <option name="project" value="LOCAL" />
       <updated>1753350076881</updated>
     </task>
-    <option name="localTasksCounter" value="7" />
+    <task id="LOCAL-00007" summary="First release of ElegantTools">
+      <option name="closed" value="true" />
+      <created>1753432990655</created>
+      <option name="number" value="00007" />
+      <option name="presentableId" value="LOCAL-00007" />
+      <option name="project" value="LOCAL" />
+      <updated>1753432990655</updated>
+    </task>
+    <task id="LOCAL-00008" summary="First release of ElegantTools">
+      <option name="closed" value="true" />
+      <created>1753433183193</created>
+      <option name="number" value="00008" />
+      <option name="presentableId" value="LOCAL-00008" />
+      <option name="project" value="LOCAL" />
+      <updated>1753433183193</updated>
+    </task>
+    <option name="localTasksCounter" value="9" />
     <servers />
   </component>
   <component name="TypeScriptGeneratedFilesManager">
     <option name="version" value="3" />
   </component>
+  <component name="Vcs.Log.Tabs.Properties">
+    <option name="TAB_STATES">
+      <map>
+        <entry key="MAIN">
+          <value>
+            <State />
+          </value>
+        </entry>
+      </map>
+    </option>
+  </component>
   <component name="VcsManagerConfiguration">
     <MESSAGE value="Initial Commit" />
     <MESSAGE value="Plotting of elegant results implemented" />
-    <option name="LAST_COMMIT_MESSAGE" value="Plotting of elegant results implemented" />
+    <MESSAGE value="First release of ElegantTools" />
+    <option name="LAST_COMMIT_MESSAGE" value="First release of ElegantTools" />
   </component>
   <component name="com.intellij.coverage.CoverageDataManagerImpl">
-    <SUITE FILE_PATH="coverage/ElegantTools$ElegantTools.coverage" NAME="ElegantTools Coverage Results" MODIFIED="1753366413237" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="false" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
+    <SUITE FILE_PATH="coverage/ElegantTools$ElegantTools.coverage" NAME="ElegantTools Coverage Results" MODIFIED="1769421815378" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="coverage.py" COVERAGE_BY_TEST_ENABLED="false" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" />
   </component>
 </project>
\ No newline at end of file
diff --git a/model.py b/model.py
index a4342fc..bea84ee 100644
--- a/model.py
+++ b/model.py
@@ -68,6 +68,9 @@ class Model:
     def loadSettingsGroup(self,group,fields,normalized=False):
         for key in group.keys():
             ele = self.om.getElement(key)
+            if ele is None:
+                print('Cannot find element',key)
+                continue
             for field in fields:
                 ele.__dict__[field]=group[key][field]
                 if normalized:
diff --git a/track.py b/track.py
index d68dbe7..cbd0b7f 100644
--- a/track.py
+++ b/track.py
@@ -73,7 +73,7 @@ class Track(QtCore.QObject):
 
     def Telegant(self):
         self.parent.UITrackOutput.appendPlainText('Starting thread to run elegant')
-        #p = subprocess.run(self.cmd)
+#        p = subprocess.run(self.cmd)
         p = subprocess.Popen(self.cmd,stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
         for line in iter(p.stdout.readline, b''):
             self.message.emit(line.decode('utf-8').strip())
diff --git a/ui/ElegantPlotGui.py b/ui/ElegantPlotGui.py
index f31d06c..2b65f69 100644
--- a/ui/ElegantPlotGui.py
+++ b/ui/ElegantPlotGui.py
@@ -2,7 +2,7 @@
 
 # Form implementation generated from reading ui file 'ui/ElegantPlotGui.ui'
 #
-# Created by: PyQt5 UI code generator 5.15.10
+# Created by: PyQt5 UI code generator 5.15.11
 #
 # WARNING: Any manual changes made to this file will be lost when pyuic5 is
 # run again.  Do not edit this file unless you know what you are doing.
diff --git a/ui/ElegantToolsGui.py b/ui/ElegantToolsGui.py
index 4138f0d..042cb4b 100644
--- a/ui/ElegantToolsGui.py
+++ b/ui/ElegantToolsGui.py
@@ -2,7 +2,7 @@
 
 # Form implementation generated from reading ui file 'ui/ElegantToolsGui.ui'
 #
-# Created by: PyQt5 UI code generator 5.15.10
+# Created by: PyQt5 UI code generator 5.15.11
 #
 # WARNING: Any manual changes made to this file will be lost when pyuic5 is
 # run again.  Do not edit this file unless you know what you are doing.
@@ -521,7 +521,7 @@ class Ui_ElegantGUI(object):
         self.menubar.addAction(self.menuHelp.menuAction())
 
         self.retranslateUi(ElegantGUI)
-        self.TabMaster.setCurrentIndex(2)
+        self.TabMaster.setCurrentIndex(0)
         self.actionQuit.triggered.connect(ElegantGUI.close) # type: ignore
         QtCore.QMetaObject.connectSlotsByName(ElegantGUI)