diff --git a/automated-iv-curves/.DS_Store b/automated-iv-curves/.DS_Store
index b44af38..94c0a47 100644
Binary files a/automated-iv-curves/.DS_Store and b/automated-iv-curves/.DS_Store differ
diff --git a/automated-iv-curves/SIM900-SIM928-Keithly196-IV.py b/automated-iv-curves/SIM900-SIM928-Keithly196-IV.py
deleted file mode 100755
index ed09692..0000000
--- a/automated-iv-curves/SIM900-SIM928-Keithly196-IV.py
+++ /dev/null
@@ -1,230 +0,0 @@
-# -*- coding: utf-8 -*-
-"""
-Created on Mon Oct 10 16:05:44 2022
-
-@author: gac-x01dc
-"""
-
-# Program to do I-V measurements
-# Using SIM928 voltage source within SIM900 mainframe
-# Using Keithley196 for voltage measurement
-
-import time
-import datetime
-import os.path
-import numpy as np
-import matplotlib.pyplot as plt
-import pyvisa
-from pathlib import Path
-rm = pyvisa.ResourceManager()
-
-import SIM900_commands as SIM900_comm
-import SIM928_commands as SIM928_comm
-import Keithley196_commands as Keithley_comm
-
-Keithley_address = 'TCPIP0::Prologix-00-21-69-01-4e-fb.psi.ch::1234::SOCKET'
-# Keithley_address = 'GPIB0::6::INSTR'
-SIM900_address = 'TCPIP0::ir-moxa01.psi.ch::3001::SOCKET'#'ASRL1::INSTR'
-
-Keithley = rm.open_resource(Keithley_address)
-SIM900 = rm.open_resource(SIM900_address)
-SIM928_port = 1
-
-# Initialise Keithley
-Keithley.clear()
-Keithley.timeout = 5000
-Keithley.read_termination = '\n'
-Keithley.write("T5X\n") # Ensures the Keithley reads when it is triggered by "X" write
-Keithley_comm.Set_Mode(Keithley, "DC V")
-Keithley_comm.Set_Range(Keithley, "Auto")
-Keithley.read() # Throwaway 
-
-# Initialise SIM900
-SIM900_comm.flush_main(SIM900)
-SIM900_comm.reset(SIM900)
-SIM900_comm.flush_port(SIM900, SIM928_port)
-
-# Function to read the voltage set by a voltage source    
-def read_source_V():
-    count = 0
-    voltage = SIM900_comm.send_query(SIM900, SIM928_port, SIM928_comm.read_voltage(), 128) # get voltage
-    print("returned data: "+voltage)
-    while (count<10) and (type(voltage)!= float):
-        try:
-            voltage = float(voltage)
-        except:   
-            print('no float')
-            voltage = SIM900_comm.send_query(SIM900, SIM928_port, SIM928_comm.read_voltage(), 128) # get voltage
-            print("returned data: "+voltage)
-        count = count + 1
-    return voltage
-
-#print(read_source_V())
-
-# Function to set voltage of SIM928
-def set_voltage(V_value=1e-3):
-    if V_value > 20:
-        print ('Voltage setting too high (>10V), it is set to 10V')
-        V_value = 20
-    elif V_value < -20:
-        print ('Voltage setting too high (<-10V), it is set to -10V')
-        V_value = -20
-    SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.set_voltage(V_value)) # get voltage 
-    time.sleep(1)
-#    count = 0
-#    while (count<10) and (read_source_V()!= V_value):
-#        print('Setting voltage again')
-#        time.sleep(1) #wait 1 second
-#        SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.set_voltage(V_value)) # get voltage  
-#        count = count + 1
-    SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.V_source_state("on"))
-    print('Voltage set to ' + str(V_value))
-#    return read_source_V()
-
-# Function to measure the current from the Keithley voltmeter
-# time_average is the averaging time, time_interval is the time between points
-# Could also use "Filter (P)" command to set the Keithley's internal averaging time
-def measure_V(time_average=10, time_interval=0.2):
-    N_points = time_average/time_interval + 1 
-    V_list = []
-    i = 1
-    Keithley_comm.Set_Range(Keithley, "Auto") #set auto range
-    time.sleep(time_interval)
-    while i < N_points:
-        V_list.append(Keithley_comm.Voltage(Keithley)) #read the voltage
-        time.sleep(time_interval)
-        i = i+1
-    V_avg_ = np.mean(V_list, dtype=np.float32)
-    V_std_ = np.std(V_list, dtype=np.float32)
-    V_err_ = V_std_/(N_points)**(1/2)
-    return [V_list, V_avg_, V_err_]
-
-
-# Function to do I-V measurements
-# Currently doesn't read the voltage that was set, due to issues with querying through mainframe
-# Errors caluclated incorrectly
-def V_scan(V_start=1e-3, step_size=1e-3, V_end=2e-3, time_average=10, sample_name='no_name', contact_1 = '', contact_2 = '', light = 'Dark', temp=777, amplifier='SR570', gain=10**3, number_of_loops=0):
-    Keithley.clear()
-    print('Measurement started: %s'\
-          %(datetime.datetime.now().strftime("%Hh%Mm%Ss")))
-    V_scan_list = np.linspace(V_start, V_end, int(abs(V_start-V_end)/step_size)+1)
-    for n_l in range(number_of_loops):
-        V_scan_list = np.append(V_scan_list,np.linspace(V_end, V_start, (abs(V_start-V_end)/step_size)+1))
-    print(V_scan_list)
-    SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.V_source_state("off")) #set source off
-    # open a file to write data to 
-    date_today = datetime.date.today() #date for making a directory
-    file_path = Path(__file__).parent / "data" / str(date_today)
-    if not os.path.exists(file_path):#make the directory if it is not there
-        os.mkdir(file_path)
-    time_start = datetime.datetime.now().strftime("%Hh%Mm%Ss")
-    filename_root = "%s_%s_%s_%s_%s_scan_at_%sK_%s" % \
-    (time_start, sample_name, contact_1, contact_2, light, temp, amplifier)
-    filename = filename_root + "_averaging%ss.txt" % (time_average)
-    plotname = filename_root + "_averaging%ss.png" % (time_average)
-    filename2 = filename_root + "_raw.txt"
-    full_name = os.path.join(file_path, filename)
-    full_plotname = os.path.join(file_path, plotname)
-    full_name2 = os.path.join(file_path, filename2)
-    #data_file=open(str(full_name),'w')
-    with open(str(full_name),'w') as data_file, open(str(full_name2),'w') as raw_V_file:
-        data_file.write("Time\tVoltage_source[V]\tVoltage_meas[V]\tVoltage_meas_err[V]\tGain[V/A]\n")
-        raw_V_file.write("Voltage_source[V]\tVoltage_meas[V]\n")
-        # just for ploting here
-        V_plot_list = []
-        V_err_plot_list = []
-        V_scan_plot_list = []
-        # A loop over all currents 
-        
-        i=0
-        # set_voltage(V_scan_list[0])
-        # time.sleep(5) #wait 3 sec to avoid large noise on first measurement
-
-        for V_scan_item in V_scan_list:
-            
-            time_start_iteration= datetime.datetime.now()
-            i = i+1
-            set_voltage(V_scan_item)
-            time.sleep(2) #wait 5 sec	for signal to settle
-            # measure+read+write the data          
-            V_source = V_scan_item
-#           V_source = read_source_V()
-            [V_list, V_avg, V_err] = measure_V(time_average=time_average, time_interval=0.2)
-            time_now = datetime.datetime.now()
-            data_string = "%s\t %s\t %.5e\t %.5e\t %s\n"\
-                                                   %(time_now, V_source, V_avg, V_err, gain)
-            data_file.write(str(data_string)) 
-            raw_V_file.write("%s\t %s\n" %(V_source, V_list))
-            V_plot_list.append(V_avg)
-            V_err_plot_list.append(V_err)
-            V_scan_plot_list.append(V_source)
-
-            #make plot
-            plt.close()
-            plt.plot(V_scan_plot_list, V_plot_list,'+')
-            plt.title(str(sample_name))
-            plt.xlabel('Source Voltage / V')
-            plt.ylabel('Measured voltage / V')
-            plt.draw()
-            plt.pause(0.1)
-            plt.show(block=False) 
-            iteration_time = datetime.datetime.now()-time_start_iteration
-            remaining_time = iteration_time.total_seconds()*(len(V_scan_list)-i)
-            print(time.strftime('remaining time: %H:%M:%S',\
-                                time.gmtime(remaining_time)))
-         
-        I_list = [V_plot_list[i]/gain for i in range(len(V_plot_list))]
-        I_err_list = [V_err_plot_list[i]/gain for i in range(len(V_plot_list))]  
-        plt.close()
-        plt.figure()
-        plt.errorbar(V_scan_plot_list, I_list, yerr=I_err_list, fmt='+')
-        plt.title(str(sample_name))
-        plt.xlabel('Source Voltage / V')
-        plt.ylabel('I / A')
-        plt.tight_layout()
-        plt.grid()
-
-        plt.savefig(full_plotname)
-        plt.draw()
-        plt.pause(0.001)
-        plt.show(block=False)
-        plt.close()
-        
-    data_file.close() 
-    raw_V_file.close()
-    set_voltage(0)
-    SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.V_source_state("off")) #set source off
-    print('Source turned off')
-    print('Measurement finished: %s'\
-          %(datetime.datetime.now().strftime("%Hh%Mm%Ss")))
-    return
-
-# V_start, step size, V_end, time average, sample name, contact 1, contact 2, light, temperature, amplifier, amplifier gain
-V_scan(-1.0, 0.05, 1.0, .1, "test", "test1", "test1", "MIR", 300, "SR570", 10**(7)) #amplifier sensitivity = 1/gain
-#V_scan(-1.0, 0.1, 1.0, 1.0, "SHADWELL", "posContactC", "negContactF", "MIR", 18, "SR570", 10**(8)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.1, 1.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.2, -2.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.2, 2.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.3, -3.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.3, 3.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.5, -5.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.5, 5.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-
-"""
-# Set up the plot
-plt.ion()  # Enable interactive mode
-figure, ax = plt.subplots(figsize=(10, 6))  # Create a figure and an axes
-ax.set_title("Live Number Update")
-
-# Loop to update the number and plot every second
-for _ in range(9999):  # Limiting to 10 iterations for demonstration
-    number = Keithley_comm.Voltage(Keithley)
-    # Create a new plot for the current number
-    figure, ax = plt.subplots(figsize=(10, 6))
-    ax.text(0.5, 0.5, str(number), fontsize=100, ha='center')  # Display the number in the center
-    ax.set_title(f"Number: {number}")
-    ax.axis('off')  # Turn off the axis
-
-    plt.show()  # Show the plot
-    time.sleep(2)  # Pause for a second
-"""
diff --git a/automated-iv-curves/config.toml b/automated-iv-curves/config.toml
index 4f21591..d0718cf 100644
--- a/automated-iv-curves/config.toml
+++ b/automated-iv-curves/config.toml
@@ -1,19 +1,31 @@
 # Experiment parameters
+[experiment]
 V_start = -1.0
+step_size = 0.5
 V_end = 1.0
-step_size = 0.05
-time_average = 0.1
+time_average = 3 # time over which to collect voltage average (time per measurement)
 sample_name = "test"
 contact_1 = "test1"
 contact_2 = "test1"
 light = "MIR"
 temp = 300
 amplifier = "SR570"
-gain = 1e7
-number_of_loops = 0
+gain = 1e7 # amplifier gain 
 
 
 # Instrument addresses: typically do NOT need to be changed
-Keithley_address = 'TCPIP0::Prologix-00-21-69-01-4e-fb.psi.ch::1234::SOCKET'
+[instruments]
+keithley_address = 'TCPIP0::Prologix-00-21-69-01-4e-fb.psi.ch::1234::SOCKET'
 SIM900_address = 'TCPIP0::ir-moxa01.psi.ch::3001::SOCKET'#'ASRL1::INSTR'
-SIM928_port = 1
\ No newline at end of file
+SIM928_port = 1
+
+# V_start, step size, V_end, time average, sample name, contact 1, contact 2, light, temperature, amplifier, amplifier gain
+# V_scan(-1.0, 0.05, 1.0, .1, "test", "test1", "test1", "MIR", 300, "SR570", 10**(7)) #amplifier sensitivity = 1/gain
+#V_scan(-1.0, 0.1, 1.0, 1.0, "SHADWELL", "posContactC", "negContactF", "MIR", 18, "SR570", 10**(8)) #amplifier sensitivity = 1/gain
+#V_scan(0.0, 0.1, 1.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
+#V_scan(0.0, 0.2, -2.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
+#V_scan(0.0, 0.2, 2.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
+#V_scan(0.0, 0.3, -3.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
+#V_scan(0.0, 0.3, 3.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
+#V_scan(0.0, 0.5, -5.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
+#V_scan(0.0, 0.5, 5.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
diff --git a/automated-iv-curves/iv_functions.py b/automated-iv-curves/iv_functions.py
index acf72a3..5b75713 100644
--- a/automated-iv-curves/iv_functions.py
+++ b/automated-iv-curves/iv_functions.py
@@ -8,16 +8,20 @@ import os.path
 import numpy as np
 import matplotlib.pyplot as plt
 import pyvisa
+import h5py
 from pathlib import Path
+import tomllib
 rm = pyvisa.ResourceManager()
 
 import SIM900_commands as SIM900_comm
 import SIM928_commands as SIM928_comm
 import Keithley196_commands as Keithley_comm
 
+with open("automated-iv-curves/config.toml", "rb") as f:
+    cfg = tomllib.load(f)
 
-Keithley = rm.open_resource(Keithley_address)
-SIM900 = rm.open_resource(SIM900_address)
+Keithley = rm.open_resource(cfg["instruments"]["keithley_address"])
+SIM900 = rm.open_resource(cfg["instruments"]["SIM900_address"])
 
 # Initialise Keithley
 Keithley.clear()
@@ -29,6 +33,7 @@ Keithley_comm.Set_Range(Keithley, "Auto")
 Keithley.read() # Throwaway 
 
 # Initialise SIM900
+SIM928_port = cfg["instruments"]["SIM928_port"]
 SIM900_comm.flush_main(SIM900)
 SIM900_comm.reset(SIM900)
 SIM900_comm.flush_port(SIM900, SIM928_port)
@@ -48,7 +53,6 @@ def read_source_V():
         count = count + 1
     return voltage
 
-#print(read_source_V())
 
 # Function to set voltage of SIM928
 def set_voltage(V_value=1e-3):
@@ -60,15 +64,9 @@ def set_voltage(V_value=1e-3):
         V_value = -20
     SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.set_voltage(V_value)) # get voltage 
     time.sleep(1)
-#    count = 0
-#    while (count<10) and (read_source_V()!= V_value):
-#        print('Setting voltage again')
-#        time.sleep(1) #wait 1 second
-#        SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.set_voltage(V_value)) # get voltage  
-#        count = count + 1
     SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.V_source_state("on"))
-    print('Voltage set to ' + str(V_value))
-#    return read_source_V()
+    print('\nVoltage set to ' + str(V_value) + " V")
+
 
 # Function to measure the current from the Keithley voltmeter
 # time_average is the averaging time, time_interval is the time between points
@@ -93,127 +91,104 @@ def measure_V(time_average=10, time_interval=0.2):
 # Currently doesn't read the voltage that was set, due to issues with querying through mainframe
 # Errors caluclated incorrectly
 def V_scan(V_start=1e-3, step_size=1e-3, V_end=2e-3, time_average=10, sample_name='no_name', contact_1 = '', contact_2 = '', light = 'Dark', temp=777, amplifier='SR570', gain=10**3, number_of_loops=0):
-    Keithley.clear()
-    print('Measurement started: %s'\
-          %(datetime.datetime.now().strftime("%Hh%Mm%Ss")))
+    Keithley.clear() # clear the buffer
+    gain = int(gain) # make sure the gain is an Int
+
+    data_id = datetime.datetime.now().strftime("%d%m%Y_%H%M%S")
+
+    print('\nStarting measurement.\nMeasurement ID: %s\n' %data_id)
     V_scan_list = np.linspace(V_start, V_end, int(abs(V_start-V_end)/step_size)+1)
     for n_l in range(number_of_loops):
         V_scan_list = np.append(V_scan_list,np.linspace(V_end, V_start, (abs(V_start-V_end)/step_size)+1))
+    print("Voltage scanning list:")
     print(V_scan_list)
+
     SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.V_source_state("off")) #set source off
+    
     # open a file to write data to 
-    date_today = datetime.date.today() #date for making a directory
-    file_path = Path(__file__).parent / "data" / str(date_today)
-    if not os.path.exists(file_path):#make the directory if it is not there
-        os.mkdir(file_path)
-    time_start = datetime.datetime.now().strftime("%Hh%Mm%Ss")
-    filename_root = "%s_%s_%s_%s_%s_scan_at_%sK_%s" % \
-    (time_start, sample_name, contact_1, contact_2, light, temp, amplifier)
-    filename = filename_root + "_averaging%ss.txt" % (time_average)
-    plotname = filename_root + "_averaging%ss.png" % (time_average)
-    filename2 = filename_root + "_raw.txt"
-    full_name = os.path.join(file_path, filename)
-    full_plotname = os.path.join(file_path, plotname)
-    full_name2 = os.path.join(file_path, filename2)
+    # file_path = Path(__file__).parent / "data" 
+    # time_start = datetime.datetime.now().strftime("%d%m%Y_%H%M%S")
+    # filename_root = "iv_%s_%s_%s_%s_%s_scan_at_%sK_%s" % \
+    # (time_start, sample_name, contact_1, contact_2, light, temp, amplifier)
+    # filename = filename_root + "_averaging%ss.txt" % (time_average)
+    # plotname = filename_root + "_averaging%ss.png" % (time_average)
+    # filename2 = filename_root + "_raw.txt"
+    # full_name = os.path.join(file_path, filename)
+    # full_plotname = os.path.join(file_path, plotname)
+    # full_name2 = os.path.join(file_path, filename2)
     #data_file=open(str(full_name),'w')
-    with open(str(full_name),'w') as data_file, open(str(full_name2),'w') as raw_V_file:
-        data_file.write("Time\tVoltage_source[V]\tVoltage_meas[V]\tVoltage_meas_err[V]\tGain[V/A]\n")
-        raw_V_file.write("Voltage_source[V]\tVoltage_meas[V]\n")
+    # with open(str(full_name),'w') as data_file, open(str(full_name2),'w') as raw_V_file:
+        # data_file.write("Time\tVoltage_source[V]\tVoltage_meas[V]\tVoltage_meas_err[V]\tGain[V/A]\n")
+        # raw_V_file.write("Voltage_source[V]\tVoltage_meas[V]\n")
         # just for ploting here
-        V_plot_list = []
-        V_err_plot_list = []
-        V_scan_plot_list = []
-        # A loop over all currents 
-        
-        i=0
-        # set_voltage(V_scan_list[0])
-        # time.sleep(5) #wait 3 sec to avoid large noise on first measurement
+    V_plot_list = []
+    V_err_plot_list = []
+    V_scan_plot_list = []
+    # A loop over all currents 
+    
+    i=0
+    # set_voltage(V_scan_list[0])
+    # time.sleep(5) #wait 3 sec to avoid large noise on first measurement
 
-        for V_scan_item in V_scan_list:
-            
-            time_start_iteration= datetime.datetime.now()
-            i = i+1
-            set_voltage(V_scan_item)
-            time.sleep(2) #wait 5 sec	for signal to settle
-            # measure+read+write the data          
-            V_source = V_scan_item
+    for V_scan_item in V_scan_list:
+        
+        time_start_iteration= datetime.datetime.now()
+        i = i+1
+        set_voltage(V_scan_item)
+        time.sleep(2) #wait 5 sec	for signal to settle
+
+        # measure+read+write the data          
+        V_source = V_scan_item
 #           V_source = read_source_V()
-            [V_list, V_avg, V_err] = measure_V(time_average=time_average, time_interval=0.2)
-            time_now = datetime.datetime.now()
-            data_string = "%s\t %s\t %.5e\t %.5e\t %s\n"\
-                                                   %(time_now, V_source, V_avg, V_err, gain)
-            data_file.write(str(data_string)) 
-            raw_V_file.write("%s\t %s\n" %(V_source, V_list))
-            V_plot_list.append(V_avg)
-            V_err_plot_list.append(V_err)
-            V_scan_plot_list.append(V_source)
+        [V_list, V_avg, V_err] = measure_V(time_average=time_average, time_interval=0.2)
+        time_now = datetime.datetime.now()
 
-            #make plot
-            plt.close()
-            plt.plot(V_scan_plot_list, V_plot_list,'+')
-            plt.title(str(sample_name))
-            plt.xlabel('Source Voltage / V')
-            plt.ylabel('Measured voltage / V')
-            plt.draw()
-            plt.pause(0.1)
-            plt.show(block=False) 
-            iteration_time = datetime.datetime.now()-time_start_iteration
-            remaining_time = iteration_time.total_seconds()*(len(V_scan_list)-i)
-            print(time.strftime('remaining time: %H:%M:%S',\
-                                time.gmtime(remaining_time)))
-         
-        I_list = [V_plot_list[i]/gain for i in range(len(V_plot_list))]
-        I_err_list = [V_err_plot_list[i]/gain for i in range(len(V_plot_list))]  
-        plt.close()
-        plt.figure()
-        plt.errorbar(V_scan_plot_list, I_list, yerr=I_err_list, fmt='+')
-        plt.title(str(sample_name))
-        plt.xlabel('Source Voltage / V')
-        plt.ylabel('I / A')
-        plt.tight_layout()
-        plt.grid()
+        # data_string = "%s\t %s\t %.5e\t %.5e\t %s\n"\
+                                                # %(time_now, V_source, V_avg, V_err, gain)
+        # data_file.write(str(data_string)) 
+        # raw_V_file.write("%s\t %s\n" %(V_source, V_list))
 
-        plt.savefig(full_plotname)
-        plt.draw()
-        plt.pause(0.001)
-        plt.show(block=False)
-        plt.close()
+        V_plot_list.append(V_avg)
+        V_err_plot_list.append(V_err)
+        V_scan_plot_list.append(V_source)
+
+        #make plot
+        # plt.close()
+        # plt.plot(V_scan_plot_list, V_plot_list,'+')
+        # plt.title(str(sample_name))
+        # plt.xlabel('Source Voltage / V')
+        # plt.ylabel('Measured voltage / V')
+        # plt.draw()
+        # plt.pause(0.1)
+        # plt.show(block=False) 
+        # iteration_time = datetime.datetime.now()-time_start_iteration
+        # remaining_time = iteration_time.total_seconds()*(len(V_scan_list)-i)
+        # print(time.strftime('Remaining time: %H:%M:%S',\
+        #                     time.gmtime(remaining_time)))
         
-    data_file.close() 
-    raw_V_file.close()
+    I_list = [V_plot_list[i]/gain for i in range(len(V_plot_list))]
+    I_err_list = [V_err_plot_list[i]/gain for i in range(len(V_plot_list))]  
+    # plt.close()
+    # plt.figure()
+    # plt.errorbar(V_scan_plot_list, I_list, yerr=I_err_list, fmt='+')
+    # plt.title(str(sample_name))
+    # plt.xlabel('Source Voltage / V')
+    # plt.ylabel('I / A')
+    # plt.tight_layout()
+    # plt.grid()
+
+    # plt.savefig(full_plotname)
+    # plt.draw()
+    # plt.pause(0.001)
+    # plt.show(block=False)
+    # plt.close()
+    
+    # data_file.close() 
+    # raw_V_file.close()
     set_voltage(0)
+
     SIM900_comm.send_command(SIM900, SIM928_port, SIM928_comm.V_source_state("off")) #set source off
     print('Source turned off')
     print('Measurement finished: %s'\
           %(datetime.datetime.now().strftime("%Hh%Mm%Ss")))
     return
-
-# V_start, step size, V_end, time average, sample name, contact 1, contact 2, light, temperature, amplifier, amplifier gain
-V_scan(-1.0, 0.05, 1.0, .1, "test", "test1", "test1", "MIR", 300, "SR570", 10**(7)) #amplifier sensitivity = 1/gain
-#V_scan(-1.0, 0.1, 1.0, 1.0, "SHADWELL", "posContactC", "negContactF", "MIR", 18, "SR570", 10**(8)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.1, 1.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.2, -2.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.2, 2.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.3, -3.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.3, 3.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.5, -5.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-#V_scan(0.0, 0.5, 5.0, 1.0, "Sun", "posContactB", "negContactH", "MIR", 18, "SR570", 10**(9)) #amplifier sensitivity = 1/gain
-
-"""
-# Set up the plot
-plt.ion()  # Enable interactive mode
-figure, ax = plt.subplots(figsize=(10, 6))  # Create a figure and an axes
-ax.set_title("Live Number Update")
-
-# Loop to update the number and plot every second
-for _ in range(9999):  # Limiting to 10 iterations for demonstration
-    number = Keithley_comm.Voltage(Keithley)
-    # Create a new plot for the current number
-    figure, ax = plt.subplots(figsize=(10, 6))
-    ax.text(0.5, 0.5, str(number), fontsize=100, ha='center')  # Display the number in the center
-    ax.set_title(f"Number: {number}")
-    ax.axis('off')  # Turn off the axis
-
-    plt.show()  # Show the plot
-    time.sleep(2)  # Pause for a second
-"""
diff --git a/automated-iv-curves/iv_run.py b/automated-iv-curves/iv_run.py
new file mode 100644
index 0000000..4cc3707
--- /dev/null
+++ b/automated-iv-curves/iv_run.py
@@ -0,0 +1,9 @@
+# Run IV curves using the SIM900/SIM928 source and the Keithley 196 voltmeter 
+
+import tomllib
+from iv_functions import V_scan
+
+with open("automated-iv-curves/config.toml", "rb") as f:
+    cfg = tomllib.load(f)
+
+V_scan(**cfg["experiment"])
\ No newline at end of file
diff --git a/automated-iv-curves/main.py b/automated-iv-curves/main.py
deleted file mode 100644
index 1200fea..0000000
--- a/automated-iv-curves/main.py
+++ /dev/null
@@ -1,6 +0,0 @@
-def main():
-    print("Hello from automated-iv-curves!")
-
-
-if __name__ == "__main__":
-    main()
diff --git a/automated-iv-curves/pyproject.toml b/automated-iv-curves/pyproject.toml
index 21c67bb..f45c7c8 100644
--- a/automated-iv-curves/pyproject.toml
+++ b/automated-iv-curves/pyproject.toml
@@ -6,6 +6,7 @@ readme = "README.md"
 requires-python = ">=3.9"
 dependencies = [
     "datetime>=5.5",
+    "h5py>=3.14.0",
     "ipykernel>=6.31.0",
     "jupyter>=1.1.1",
     "matplotlib>=3.9.4",
diff --git a/automated-iv-curves/uv.lock b/automated-iv-curves/uv.lock
index dc15d80..cf67669 100644
--- a/automated-iv-curves/uv.lock
+++ b/automated-iv-curves/uv.lock
@@ -171,6 +171,8 @@ source = { virtual = "." }
 dependencies = [
     { name = "datetime", version = "5.5", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
     { name = "datetime", version = "6.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
+    { name = "h5py", version = "3.14.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
+    { name = "h5py", version = "3.16.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
     { name = "ipykernel", version = "6.31.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
     { name = "ipykernel", version = "7.2.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
     { name = "jupyter" },
@@ -191,6 +193,7 @@ dependencies = [
 [package.metadata]
 requires-dist = [
     { name = "datetime", specifier = ">=5.5" },
+    { name = "h5py", specifier = ">=3.14.0" },
     { name = "ipykernel", specifier = ">=6.31.0" },
     { name = "jupyter", specifier = ">=1.1.1" },
     { name = "matplotlib", specifier = ">=3.9.4" },
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 ]
 
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