1788 lines
54 KiB
Perl
Executable File
1788 lines
54 KiB
Perl
Executable File
#use strict;
|
|
package MSR;
|
|
|
|
# This module provides some tools to create, manipulate and extract information from MSR files
|
|
|
|
my $EMPTY="";
|
|
my $SPACE=" ";
|
|
|
|
my %DATADIRS = (
|
|
"LEM", "/mnt/data/nemu/his",
|
|
"GPS", "/afs/psi.ch/project/bulkmusr/data/gps",
|
|
"LTF", "/afs/psi.ch/project/bulkmusr/data/ltf",
|
|
"Dolly", "/afs/psi.ch/project/bulkmusr/data/dolly",
|
|
"GPD", "/afs/psi.ch/project/bulkmusr/data/gpd"
|
|
);
|
|
|
|
my %BeamLines = ( "LEM", "MUE4", "GPS", "PIM3", "LTF", "PIM3", "Dolly", "PIE1", "GPD", "PIE1" );
|
|
|
|
my %Def_Format =
|
|
( "LEM", "ROOT-NPP", "GPS", "PSI-BIN", "LTF", "PSI-BIN", "Dolly", "PSI-BIN" , "GPD", "PSI-BIN");
|
|
|
|
# Additional information to extract run properties from database
|
|
# For LEM use summary files
|
|
$SUMM_DIR="/afs/psi.ch/project/nemu/data/summ/";
|
|
# For Bulok use list files
|
|
%DBDIR=("LEM","/afs/psi.ch/project/nemu/data/log/",
|
|
"GPS","/afs/psi.ch/project/bulkmusr/olddata/list/",
|
|
"Dolly","/afs/psi.ch/project/bulkmusr/olddata/list/",
|
|
"GPD","/afs/psi.ch/project/bulkmusr/olddata/list/",
|
|
"ALC","/afs/psi.ch/project/bulkmusr/olddata/list/",
|
|
"LTF","/afs/psi.ch/project/bulkmusr/olddata/list/");
|
|
|
|
# Information available since
|
|
%MinYears=("LEM","2001",
|
|
"GPS","1993",
|
|
"Dolly","1998",
|
|
"GPD","1993",
|
|
"ALC","1993",
|
|
"LTF","1995");
|
|
|
|
# And to deal with old names of bulk muons
|
|
%AltArea=("GPS","PIM3","LTF","PIM3","ALC","PIE3","Dolly","PIE1","GPD","MUE1");
|
|
|
|
|
|
# Additions to paremeters' names
|
|
my $erradd = "d";
|
|
my $minadd = "_min";
|
|
my $maxadd = "_max";
|
|
|
|
|
|
|
|
##########################################################################
|
|
# CreateMSR
|
|
#
|
|
# Input in %All
|
|
# Required:
|
|
# $All{"FitType1/2/3"} - Function types, 3 components
|
|
# $All{"LRBF"} - Histograms, comma separated
|
|
# $All{"Tis"}
|
|
# $All{"Tfs"}
|
|
# $All{"BINS"}
|
|
# $All{"FILENAME"}
|
|
# $All{"go"}
|
|
# $All{"TITLE"}
|
|
# $All{"RunNumbers"}
|
|
# $All{"FitAsyType"}
|
|
# $All{"BeamLine"}
|
|
# $All{"YEAR"}
|
|
#
|
|
# Optional:
|
|
# $All{"Sh_$Param"}
|
|
# $All{"ltc"}
|
|
# $All{"$Param"} value, error, min, and max
|
|
# $All{"logx/y"}
|
|
# $All{"Xi/f"}
|
|
#
|
|
# Output
|
|
# $Full_T_Block - Full theory block
|
|
# @Paramcomp - Space separated list of parameters for each component
|
|
# FILENAME.msr - MSR file saved
|
|
#
|
|
##########################################################################
|
|
sub CreateMSR {
|
|
my %All = %{$_[0]};
|
|
|
|
# Start with empty array
|
|
my @FitTypes = ();
|
|
|
|
foreach ($All{"FitType1"},$All{"FitType2"},$All{"FitType3"}) {
|
|
if ($_ ne "None") {
|
|
@FitTypes=(@FitTypes,$_);
|
|
}
|
|
}
|
|
|
|
my @Hists = split( /,/, $All{"LRBF"} );
|
|
# TODO
|
|
# Check the number of histograms
|
|
# should be 2 or 4 histograms
|
|
# should be checked in GUI
|
|
# for 2 simple asymmetry fit
|
|
# for 4 two run blocks with different geometric parameters:
|
|
# Alpha, No, NBg, Phi, Asy
|
|
|
|
my @TiVals = split( /,/, $All{"Tis"} );
|
|
my @TfVals = split( /,/, $All{"Tfs"} );
|
|
my @BINVals = split( /,/, $All{"BINS"} );
|
|
my $FILENAME = $All{"FILENAME"};
|
|
my $BeamLine = $All{"BeamLine"};
|
|
my $YEAR = $All{"YEAR"};
|
|
|
|
my $Step = $All{"go"};
|
|
if ( $Step eq "PLOT" ) {
|
|
$FITMINTYPE = $EMPTY;
|
|
}
|
|
elsif ( $Step eq "MIGRAD" ) {
|
|
$FITMINTYPE = "MINIMIZE\nMIGRAD\nHESSE";
|
|
}
|
|
elsif ( $Step eq "MINOS" ) {
|
|
$FITMINTYPE = "MIGRAD\nMINOS";
|
|
}
|
|
elsif ( $Step eq "SIMPLEX" ) {
|
|
$FITMINTYPE = "SCAN\nSIMPLEX";
|
|
}
|
|
|
|
# Proper way
|
|
if ( $All{"Minimization"} ne $EMPTY && $All{"ErrorCalc"} ne $EMPTY && $Step ne "PLOT" ) {
|
|
$FITMINTYPE = $All{"Minimization"}."\n".$All{"ErrorCalc"};
|
|
}
|
|
|
|
|
|
# First create the THEORY Block
|
|
my ($Full_T_Block,$Paramcomp_ref)=MSR::CreateTheory(@FitTypes);
|
|
my @Paramcomp = @$Paramcomp_ref;
|
|
|
|
|
|
# If we have a FUNCTIONS Block the Full_T_Block should be
|
|
# replaced by Func_T_Block
|
|
$FUNCTIONS_Block = $EMPTY;
|
|
if ($All{"FunctionsBlock"} ne $EMPTY) {
|
|
$FUNCTIONS_Block = "
|
|
###############################################################
|
|
FUNCTIONS
|
|
###############################################################
|
|
".$All{"FunctionsBlock"}."\n";
|
|
$Full_T_Block=$All{"Func_T_Block"};
|
|
# remove all _N to end (may fail with large number of parameters)
|
|
$Full_T_Block =~ s/_\d\b//g;
|
|
}
|
|
|
|
# Counter for RUNS
|
|
my $iRun = 1;
|
|
|
|
# Counter of Params
|
|
my $PCount = 1;
|
|
|
|
# Need to select here RUNSAuto or RUNSManual
|
|
# $RUNSType = 0 (Auto) or 1 (Manual)
|
|
my $RUNSType = 0;
|
|
my @RUNS=();
|
|
if ($All{"RunNumbers"} ne $EMPTY) {
|
|
@RUNS=split( /,/, $All{"RunNumbers"});
|
|
$RUNSType = 0;
|
|
}
|
|
elsif ($All{"RunFiles"} ne $EMPTY) {
|
|
@RUNS=split( /,/, $All{"RunFiles"});
|
|
$RUNSType = 1;
|
|
}
|
|
|
|
# $shcount is a counter for shared parameters
|
|
# msr2data \[1363 1365 1366\] _Dolly_2010 msr-1363 global
|
|
if ( $#RUNS == 0 ) {
|
|
my $shcount = 1;
|
|
} else {
|
|
if ( $All{"Sh_Alpha"} == 1 ) {
|
|
my $shcount = 1;
|
|
} else {
|
|
my $shcount = 0;
|
|
}
|
|
}
|
|
|
|
$shcount = 1;
|
|
my $RUN_Block = $EMPTY;
|
|
my $RUNS_Line = $EMPTY;
|
|
|
|
# range order
|
|
my $Range_Order = 1;
|
|
foreach my $RUN (@RUNS) {
|
|
#######################################################################
|
|
# Prepare the Parameters and initial values block
|
|
my $component = 0;
|
|
my $Single_RUN = $EMPTY;
|
|
|
|
# Prepare map line for each run
|
|
my $MAP_Line = "map ";
|
|
|
|
# How many non-shared parameter for this RUN?
|
|
my $nonsh = 0;
|
|
|
|
# Prepeare Alpha line for the RUN block. Empty initially.
|
|
my $Alpha_Line = $EMPTY;
|
|
|
|
# Loop over all components in the fit
|
|
foreach my $FitType (@FitTypes) {
|
|
++$component;
|
|
my $Parameters = $Paramcomp[ $component - 1 ];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
|
|
# For the first component we need Alpha for Asymmetry fits
|
|
if ($component == 1) {
|
|
unshift( @Params, "Alpha" );
|
|
}
|
|
|
|
foreach $Param (@Params) {
|
|
$Param_ORG = $Param;
|
|
if ( ($#FitTypes != 0) && ($Param ne "Alpha") ) {
|
|
$Param = join( $EMPTY, $Param, "_", "$component" );
|
|
}
|
|
|
|
# If we have only one RUN then everything is shared
|
|
if ( $#RUNS == 0 ) {
|
|
$Shared = 1;
|
|
}
|
|
# Otherwise check input if it was marked as shared
|
|
else {
|
|
$Shared = $All{"Sh_$Param"};
|
|
}
|
|
|
|
# Alpha Line
|
|
#
|
|
# If you encounter alpha in the parameters list make sure
|
|
# to fill this line for the RUN block.
|
|
if ( $Param_ORG eq "Alpha" ) {
|
|
if ($Shared) {
|
|
# If alpha is shared use always the same line
|
|
$Alpha_Line = "alpha 1\n";
|
|
}
|
|
else {
|
|
# Otherwise modify alpha line accordingly
|
|
$Alpha_Line = "alpha $PCount\n";
|
|
}
|
|
}
|
|
|
|
# End of Alpha Line
|
|
####################################################################################################
|
|
|
|
# Start preparing the parameters block
|
|
if ($Shared) {
|
|
|
|
# Parameter is shared enough to keep order from first run
|
|
if ( $iRun == 1 ) {
|
|
$Full_T_Block =~ s/$Param_ORG/$PCount/;
|
|
++$shcount;
|
|
++$PCount;
|
|
}
|
|
} else {
|
|
# Parameter is not shared, use map unless it is a single RUN fit
|
|
# Skip adding to map line in these cases
|
|
if ( $Param ne "Alpha" && $#RUNS != 0 )
|
|
{
|
|
++$nonsh;
|
|
$Full_T_Block =~ s/$Param_ORG/map$nonsh/;
|
|
$MAP_Line = join( ' ', $MAP_Line, $PCount );
|
|
}
|
|
++$PCount;
|
|
}
|
|
$NtotPar = $PCount;
|
|
}
|
|
}
|
|
|
|
# Finished preparing the FITPARAMETERS block
|
|
#######################################################################
|
|
|
|
# For each defined range we need a block in the RUN-Block
|
|
# Also for each histogram in Single Histograms fits
|
|
# Also for Imaginaryand and Real for RRF fits
|
|
|
|
$RUN = $RUNS[ $iRun - 1 ];
|
|
|
|
if ($All{"RUNSType"}) {
|
|
$RUN_Line = MSR::RUNFileNameMan($RUN);
|
|
} else {
|
|
$RUN_Line = MSR::RUNFileNameAuto($RUN,$YEAR,$BeamLine);
|
|
}
|
|
|
|
$Type_Line = "fittype 2";
|
|
$PLT = 2;
|
|
$Hist_Lines =
|
|
"forward $Hists[0]\nbackward $Hists[1]";
|
|
|
|
$Bg_Line = "background";
|
|
$Data_Line = "data";
|
|
$T0_Line = "t0";
|
|
$NHist=1;
|
|
foreach $Hist (@Hists) {
|
|
foreach ("t0","Bg1","Bg2","Data1","Data2") {
|
|
$Name = "$_$NHist";
|
|
# If empty fill with defaults
|
|
if ($All{$Name} eq $EMPTY) {
|
|
$All{$Name}=MSR::T0BgData($_,$Hist,$BeamLine);
|
|
}
|
|
}
|
|
$Bg_Line = $Bg_Line." ".$All{"Bg1$NHist"}." ".$All{"Bg2$NHist"};
|
|
$Data_Line =$Data_Line." ".$All{"Data1$NHist"}." ".$All{"Data2$NHist"};
|
|
if ($All{"t0$NHist"} ne $EMPTY) {
|
|
$T0_Line=$T0_Line." ".$All{"Data1$NHist"};
|
|
}
|
|
$NHist++;
|
|
}
|
|
|
|
$FRANGE_Line = "fit TINI TFIN";
|
|
$PAC_Line = "packing BINNING";
|
|
|
|
|
|
if ($T0_Line ne "t0") {
|
|
$Data_Line= $Data_Line."\n".$T0_Line;
|
|
}
|
|
|
|
$Single_RUN =
|
|
"$RUN_Line\n$Type_Line\n$Alpha_Line$Hist_Lines\n$Bg_Line\n$Data_Line\n$MAP_Line\n$FRANGE_Line\n$PAC_Line\n\n";
|
|
|
|
# Now add the appropriate values of fit range and packing
|
|
my $Range_Min = 8;
|
|
my $Range_Max = 0;
|
|
my $k = 0;
|
|
foreach my $Ti (@TiVals) {
|
|
my $Tf = $TfVals[$k];
|
|
my $BIN = $BINVals[$k];
|
|
$RUN_Block = $RUN_Block . $Single_RUN;
|
|
$RUN_Block =~ s/TINI/$Ti/g;
|
|
$RUN_Block =~ s/TFIN/$Tf/g;
|
|
$RUN_Block =~ s/BINNING/$BIN/g;
|
|
|
|
# For multiple ranges use this
|
|
if ( $Ti < $Range_Min ) { $Range_Min = $Ti; }
|
|
if ( $Tf > $Range_Max ) { $Range_Max = $Tf; }
|
|
|
|
$RUNS_Line = "$RUNS_Line " . $Range_Order;
|
|
++$k;
|
|
++$Range_Order;
|
|
}
|
|
++$iRun;
|
|
}
|
|
|
|
# The number of runs is
|
|
$NRUNS = $iRun - 1;
|
|
|
|
# Start constructing all blocks
|
|
my $TitleLine = $All{"TITLE"}."\n# Run Numbers: ".$All{"RunNumbers"};
|
|
$TitleLine =~ s/,/:/g;
|
|
|
|
# Get parameter block from MSR::PrepParamTable(\%All);
|
|
my $FitParaBlk = "
|
|
###############################################################
|
|
FITPARAMETER
|
|
###############################################################
|
|
# No Name Value Err Min Max ";
|
|
my %PTable=MSR::PrepParamTable(\%All);
|
|
my $NParam=scalar keys( %PTable );
|
|
# Fill the table with labels and values of parametr
|
|
for (my $iP=0;$iP<$NParam;$iP++) {
|
|
my ($Param,$value,$error,$minvalue,$maxvalue,$RUNtmp) = split(/,/,$PTable{$iP});
|
|
if ( $minvalue == $maxvalue ) {
|
|
$minvalue = $EMPTY;
|
|
$maxvalue = $EMPTY;
|
|
}
|
|
$PCount=$iP+1;
|
|
$FitParaBlk = $FitParaBlk."
|
|
$PCount $Param $value $error $error $minvalue $maxvalue";
|
|
}
|
|
|
|
$Full_T_Block = "
|
|
###############################################################
|
|
THEORY
|
|
###############################################################
|
|
$Full_T_Block
|
|
";
|
|
|
|
|
|
$RUN_Block =
|
|
"###############################################################
|
|
$RUN_Block";
|
|
|
|
$COMMANDS_Block =
|
|
"###############################################################
|
|
COMMANDS
|
|
FITMINTYPE
|
|
SAVE
|
|
";
|
|
$COMMANDS_Block =~ s/FITMINTYPE/$FITMINTYPE/g;
|
|
|
|
# Check if log x and log y are selected
|
|
my $logxy = $EMPTY;
|
|
if ( $All{"logx"} eq "y" ) { $logxy = $logxy . "logx\n"; }
|
|
if ( $All{"logy"} eq "y" ) { $logxy = $logxy . "logy\n"; }
|
|
|
|
# Check if a plot range is defined (i.e. different from fit)
|
|
$PRANGE_Line = "use_fit_ranges";
|
|
if ( $All{"Xi"} != $All{"Xf"} ) {
|
|
|
|
# if ($Yi != $Yf) {
|
|
$PRANGE_Line = "range ".$All{"Xi"}." ".$All{"Xf"}." ".$All{"Yi"}." ".$All{"Yf"};
|
|
|
|
# } else {
|
|
# $PRANGE_Line = "range $Xi $Xf";
|
|
# }
|
|
}
|
|
|
|
$VIEWBIN_Line ="";
|
|
if ( $All{"ViewBin"}!=0 ) { $VIEWBIN_Line = "view_packing ".$All{"ViewBin"};}
|
|
|
|
my $RRFBlock=MSR::CreateRRFBlock(\%All);
|
|
$PLOT_Block =
|
|
"###############################################################
|
|
PLOT $PLT
|
|
runs $RUNS_Line
|
|
$PRANGE_Line
|
|
$VIEWBIN_Line
|
|
$RRFBlock
|
|
$logxy";
|
|
|
|
if ($All{"FUNITS"} eq $EMPTY) {$All{"FUNITS"}="MHz";}
|
|
if ($All{"FAPODIZATION"} eq $EMPTY) {$All{"FAPODIZATION"}="STRONG";}
|
|
if ($All{"FPLOT"} eq $EMPTY) {$All{"FPLOT"}="POWER";}
|
|
if ($All{"FPHASE"} eq $EMPTY) {$All{"FPHASE"}="8.5";}
|
|
|
|
|
|
$FOURIER_Block=
|
|
"###############################################################
|
|
FOURIER
|
|
units FUNITS # units either 'Gauss', 'MHz', or 'Mc/s'
|
|
fourier_power 12
|
|
apodization FAPODIZATION # NONE, WEAK, MEDIUM, STRONG
|
|
plot FPLOT # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
|
|
phase FPHASE
|
|
#range FRQMIN FRQMAX";
|
|
|
|
$FOURIER_Block=~ s/FUNITS/$All{"FUNITS"}/g;
|
|
$FOURIER_Block=~ s/FAPODIZATION/$All{"FAPODIZATION"}/g;
|
|
$FOURIER_Block=~ s/FPLOT/$All{"FPLOT"}/g;
|
|
$FOURIER_Block=~ s/FPHASE/$All{"FPHASE"}/g;
|
|
|
|
# Don't know why but it is needed initially
|
|
$STAT_Block =
|
|
"###############################################################
|
|
STATISTIC --- 0000-00-00 00:00:00
|
|
*** FIT DID NOT CONVERGE ***";
|
|
|
|
|
|
# Empty line at the end of each block
|
|
my $FullMSRFile = "$TitleLine$FitParaBlk\n$Full_T_Block\n$FUNCTIONS_Block\n$RUN_Block\n$COMMANDS_Block\n$PLOT_Block\n$FOURIER_Block\n$STAT_Block\n";
|
|
|
|
# Open output file FILENAME.msr
|
|
open( OUTF,q{>},"$FILENAME.msr" );
|
|
print OUTF ("$FullMSRFile");
|
|
close(OUTF);
|
|
return($Full_T_Block,\@Paramcomp);
|
|
}
|
|
|
|
##########################################################################
|
|
# CreateMSRSingleHist
|
|
##########################################################################
|
|
sub CreateMSRSingleHist {
|
|
my %All = %{$_[0]};
|
|
|
|
# Start with empty array
|
|
my @FitTypes = ();
|
|
|
|
foreach ($All{"FitType1"},$All{"FitType2"},$All{"FitType3"}) {
|
|
if ($_ ne "None") {
|
|
@FitTypes=(@FitTypes,$_);
|
|
}
|
|
}
|
|
|
|
my @Hists = split( /,/, $All{"LRBF"} );
|
|
my @TiVals = split( /,/, $All{"Tis"} );
|
|
my @TfVals = split( /,/, $All{"Tfs"} );
|
|
my @BINVals = split( /,/, $All{"BINS"} );
|
|
my $FILENAME = $All{"FILENAME"};
|
|
my $BeamLine = $All{"BeamLine"};
|
|
my $YEAR = $All{"YEAR"};
|
|
|
|
my $Step = $All{"go"};
|
|
if ( $Step eq "PLOT" ) {
|
|
$FITMINTYPE = $EMPTY;
|
|
} elsif ( $Step eq "MIGRAD" ) {
|
|
$FITMINTYPE = "MINIMIZE\nMIGRAD\nHESSE";
|
|
} elsif ( $Step eq "MINOS" ) {
|
|
$FITMINTYPE = "MIGRAD\nMINOS";
|
|
} elsif ( $Step eq "SIMPLEX" ) {
|
|
$FITMINTYPE = "SCAN\nSIMPLEX";
|
|
}
|
|
|
|
# Proper way
|
|
if ( $All{"Minimization"} ne $EMPTY && $All{"ErrorCalc"} ne $EMPTY && $Step ne "PLOT" ) {
|
|
$FITMINTYPE = $All{"Minimization"}."\n".$All{"ErrorCalc"};
|
|
}
|
|
|
|
|
|
# First create the THEORY Block
|
|
my ($Full_T_Block,$Paramcomp_ref)=MSR::CreateTheory(@FitTypes);
|
|
my @Paramcomp = @$Paramcomp_ref;
|
|
|
|
# If we have a FUNCTIONS Block the Full_T_Block should be
|
|
# replaced by Func_T_Block
|
|
$FUNCTIONS_Block = $EMPTY;
|
|
if ($All{"FunctionsBlock"} ne $EMPTY) {
|
|
$FUNCTIONS_Block = "
|
|
###############################################################
|
|
FUNCTIONS
|
|
###############################################################
|
|
".$All{"FunctionsBlock"}."\n";
|
|
$Full_T_Block=$All{"Func_T_Block"};
|
|
# remove all _N to end
|
|
$Full_T_Block =~ s/_\d\b//g;
|
|
}
|
|
|
|
# Counter for RUNS
|
|
my $iRun = 1;
|
|
|
|
# Counter of Params
|
|
my $PCount = 1;
|
|
|
|
# Need to select here RUNSAuto or RUNSManual
|
|
# $RUNSType = 0 (Auto) or 1 (Manual)
|
|
my $RUNSType = 0;
|
|
my @RUNS=();
|
|
if ($All{"RunNumbers"} ne $EMPTY) {
|
|
@RUNS=split( /,/, $All{"RunNumbers"});
|
|
$RUNSType = 0;
|
|
}
|
|
elsif ($All{"RunFiles"} ne $EMPTY) {
|
|
@RUNS=split( /,/, $All{"RunFiles"});
|
|
$RUNSType = 1;
|
|
}
|
|
|
|
# Until here identical to sub CreateMSR
|
|
# $shcount is a counter for shared parameters
|
|
if ( $#RUNS == 0 && $#Hists == 0) {
|
|
my $shcount = 1;
|
|
} else {
|
|
if ( $All{"Sh_No"} == 1 ) {
|
|
my $shcount = 1;
|
|
} elsif ( $All{"Sh_NBg"} == 1 ) {
|
|
my $shcount = 1;
|
|
} else {
|
|
my $shcount = 0;
|
|
}
|
|
}
|
|
|
|
$shcount = 1;
|
|
my $RUN_Block = $EMPTY;
|
|
my $RUNS_Line = $EMPTY;
|
|
|
|
# range order
|
|
my $Range_Order = 1;
|
|
my $iHist = 0;
|
|
foreach my $RUN (@RUNS) {
|
|
#######################################################################
|
|
# For a single histogram fit we basically need to repeat this for each hist
|
|
# However, "physical" parameters such as Asymmetry, relaxation etc. should
|
|
# be the same for all histograms
|
|
# We distinguich between sharing among different runs to common parameters
|
|
# for different histograms. The first is done in the usual "Sharing" schame,
|
|
# while the second has to be done in the functions block. This can be done
|
|
# in a consistent, non-confusing algorithm
|
|
foreach my $Hist (@Hists) {
|
|
|
|
# Prepare the Parameters and initial values block
|
|
my $component = 0;
|
|
my $Single_RUN = $EMPTY;
|
|
|
|
# Prepare map line for each run
|
|
my $MAP_Line = "map ";
|
|
|
|
# How many non-shared parameter for this RUN?
|
|
my $nonsh = 0;
|
|
|
|
# Prepeare No/NBg line for the RUN block. Empty initially.
|
|
my $NoBg_Line = $EMPTY;
|
|
|
|
# Loop over all components in the fit
|
|
foreach my $FitType (@FitTypes) {
|
|
++$component;
|
|
my $Parameters = $Paramcomp[ $component - 1 ];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
# Only the first histiograms has new physical parameters
|
|
# the others keep only Phi if they have it
|
|
|
|
# For the first component we need No and NBg for SingleHist fits
|
|
if ( $component == 1 ) {
|
|
unshift( @Params, ( "No", "NBg" ) );
|
|
}
|
|
|
|
foreach $Param (@Params) {
|
|
$Param_ORG = $Param;
|
|
$Param=$Param.$Hist;
|
|
if ( ($#FitTypes != 0) && !( $Param_ORG =~ m/^(No|NBg)/ ) ) {
|
|
$Param = join( $EMPTY, $Param, "_", "$component" );
|
|
}
|
|
|
|
# If we have only one RUN with one Histogram then everything is shared
|
|
if ( $#RUNS == 0 && $#Hists == 0 ) {
|
|
$Shared = 1;
|
|
}
|
|
# Otherwise check input if it was marked as shared
|
|
else {
|
|
$Shared = $All{"Sh_$Param"};
|
|
}
|
|
|
|
# No and NBg Lines
|
|
#
|
|
# If you encounter No in the parameters list make sure
|
|
# to fill this line for the RUN block.
|
|
if ( $Param_ORG eq "No" ) {
|
|
if ($Shared) {
|
|
$NoBg_Line = "norm 1\n";
|
|
}
|
|
else {
|
|
$NoBg_Line = "norm $PCount\n";
|
|
}
|
|
|
|
# Optional - add lifetime correction for SingleHist fits
|
|
if ( $All{"ltc"} eq "y" ) {
|
|
$NoBg_Line = $NoBg_Line . "lifetimecorrection\n";
|
|
}
|
|
}
|
|
# If you encounter NBg in the parameters list make sure
|
|
# to fill this line for the RUN block.
|
|
elsif ( $Param_ORG eq "NBg" ) {
|
|
if ($Shared) {
|
|
$NoBg_Line = $NoBg_Line . "backgr.fit 2\n";
|
|
}
|
|
else {
|
|
$NoBg_Line = $NoBg_Line . "backgr.fit $PCount\n";
|
|
}
|
|
}
|
|
|
|
# End of No and NBg Lines
|
|
####################################################################################################
|
|
|
|
# Start preparing the parameters block
|
|
if ($Shared) {
|
|
# Parameter is shared enough to keep order from first run
|
|
if ( $iRun == 1 ) {
|
|
$Full_T_Block =~ s/$Param_ORG/$PCount/;
|
|
++$shcount;
|
|
++$PCount;
|
|
}
|
|
} else {
|
|
# Parameter is not shared, use map unless it is a single RUN fit
|
|
# Skip adding to map line in these cases
|
|
if ( !( $Param_ORG =~ m/^(No|NBg)/ ) && ($#RUNS != 0 || $#Hist != 0)) {
|
|
++$nonsh;
|
|
$Full_T_Block =~ s/$Param_ORG/map$nonsh/;
|
|
$MAP_Line = join( ' ', $MAP_Line, $PCount );
|
|
}
|
|
++$PCount;
|
|
}
|
|
$NtotPar = $PCount;
|
|
}
|
|
}
|
|
|
|
# Finished preparing the FITPARAMETERS block
|
|
#######################################################################
|
|
|
|
# For each defined range we need a block in the RUN-Block
|
|
# Also for each histogram in Single Histograms fits
|
|
# Also for Imaginary and and Real for RRF fits
|
|
|
|
$RUN = $RUNS[ $iRun - 1 ];
|
|
|
|
if ($All{"RUNSType"}) {
|
|
$RUN_Line = MSR::RUNFileNameMan($RUN);
|
|
} else {
|
|
$RUN_Line = MSR::RUNFileNameAuto($RUN,$YEAR,$BeamLine);
|
|
}
|
|
|
|
$Type_Line = "fittype 0";
|
|
$PLT = 0;
|
|
$Hist_Lines = "forward HIST";
|
|
$Bg_Line = $EMPTY;
|
|
$Data_Line = "data";
|
|
|
|
foreach ("t0","Bg1","Bg2","Data1","Data2") {
|
|
$Name = "$_$Hist";
|
|
# If empty fill with defaults
|
|
if ($All{$Name} eq $EMPTY) {
|
|
$All{$Name}=MSR::T0BgData($_,$Hist,$BeamLine);
|
|
}
|
|
}
|
|
$Bg_Line = $Bg_Line." ".$All{"Bg1$Hist"}." ".$All{"Bg2$Hist"};
|
|
$Data_Line =$Data_Line." ".$All{"Data1$Hist"}." ".$All{"Data2$Hist"};
|
|
if ($All{"t0$Hist"} ne $EMPTY) {
|
|
$Data_Line=$Data_Line."\nt0 ".$All{"t0$Hist"};
|
|
}
|
|
|
|
# $MAP_Line = "map 0 0 0 0 0 0 0 0 0 0";
|
|
$FRANGE_Line = "fit TINI TFIN";
|
|
$PAC_Line = "packing BINNING";
|
|
|
|
$Single_RUN = $EMPTY;
|
|
$Tmp_Hist_Line = $Hist_Lines;
|
|
$Tmp_Hist_Line =~ s/HIST/$Hist/g;
|
|
$Single_RUN = $Single_RUN
|
|
. "$RUN_Line\n$Type_Line\n$NoBg_Line$Tmp_Hist_Line\n$Data_Line\n$MAP_Line\n$FRANGE_Line\n$PAC_Line\n\n";
|
|
|
|
# Now add the appropriate values of fit range and packing
|
|
my $Range_Min = 8;
|
|
my $Range_Max = 0;
|
|
my $k = 0;
|
|
foreach my $Ti (@TiVals) {
|
|
my $Tf = $TfVals[$k];
|
|
my $BIN = $BINVals[$k];
|
|
$RUN_Block = $RUN_Block . $Single_RUN;
|
|
$RUN_Block =~ s/TINI/$Ti/g;
|
|
$RUN_Block =~ s/TFIN/$Tf/g;
|
|
$RUN_Block =~ s/BINNING/$BIN/g;
|
|
|
|
# For multiple ranges use this
|
|
if ( $Ti < $Range_Min ) { $Range_Min = $Ti; }
|
|
if ( $Tf > $Range_Max ) { $Range_Max = $Tf; }
|
|
$RUNS_Line = "$RUNS_Line " . $Range_Order;
|
|
++$k;
|
|
++$Range_Order;
|
|
}
|
|
++$iHist;
|
|
}
|
|
++$iRun;
|
|
}
|
|
|
|
# The number of runs is
|
|
$NRUNS = $iRun - 1;
|
|
|
|
# Start constructing all block
|
|
my $TitleLine = $All{"TITLE"}."\n# Run Numbers: ".$All{"RunNumbers"};
|
|
$TitleLine =~ s/,/:/g;
|
|
|
|
# Get parameter block from MSR::PrepParamTable(\%All);
|
|
my $FitParaBlk = "
|
|
###############################################################
|
|
FITPARAMETER
|
|
###############################################################
|
|
# No Name Value Err Min Max ";
|
|
my %PTable=MSR::PrepParamTable(\%All);
|
|
my $NParam=scalar keys( %PTable );
|
|
# Fill the table with labels and values of parametr
|
|
for (my $iP=0;$iP<$NParam;$iP++) {
|
|
my ($Param,$value,$error,$minvalue,$maxvalue,$RUNtmp) = split(/,/,$PTable{$iP});
|
|
if ( $minvalue == $maxvalue ) {
|
|
$minvalue = $EMPTY;
|
|
$maxvalue = $EMPTY;
|
|
}
|
|
$PCount=$iP+1;
|
|
$FitParaBlk = $FitParaBlk."
|
|
$PCount $Param $value $error $error $minvalue $maxvalue";
|
|
}
|
|
|
|
$Full_T_Block = "
|
|
###############################################################
|
|
THEORY
|
|
###############################################################
|
|
$Full_T_Block
|
|
";
|
|
|
|
$RUN_Block =
|
|
"###############################################################
|
|
$RUN_Block";
|
|
|
|
$COMMANDS_Block =
|
|
"###############################################################
|
|
COMMANDS
|
|
FITMINTYPE
|
|
SAVE
|
|
";
|
|
$COMMANDS_Block =~ s/FITMINTYPE/$FITMINTYPE/g;
|
|
|
|
# Check if log x and log y are selected
|
|
my $logxy = $EMPTY;
|
|
if ( $All{"logx"} eq "y" ) { $logxy = $logxy . "logx\n"; }
|
|
if ( $All{"logy"} eq "y" ) { $logxy = $logxy . "logy\n"; }
|
|
|
|
# Check if a plot range is defined (i.e. different from fit)
|
|
$PRANGE_Line = "use_fit_ranges";
|
|
if ( $All{"Xi"} != $All{"Xf"} ) {
|
|
|
|
# if ($Yi != $Yf) {
|
|
$PRANGE_Line = "range ".$All{"Xi"}." ".$All{"Xf"}." ".$All{"Yi"}." ".$All{"Yf"};
|
|
|
|
# } else {
|
|
# $PRANGE_Line = "range $Xi $Xf";
|
|
# }
|
|
}
|
|
|
|
my $RRFBlock=MSR::CreateRRFBlock(\%All);
|
|
$PLOT_Block =
|
|
"###############################################################
|
|
PLOT $PLT
|
|
runs $RUNS_Line
|
|
$PRANGE_Line
|
|
$RRFBlock
|
|
$logxy";
|
|
|
|
if ($All{"FUNITS"} eq $EMPTY) {$All{"FUNITS"}="MHz";}
|
|
if ($All{"FAPODIZATION"} eq $EMPTY) {$All{"FAPODIZATION"}="STRONG";}
|
|
if ($All{"FPLOT"} eq $EMPTY) {$All{"FPLOT"}="POWER";}
|
|
if ($All{"FPHASE"} eq $EMPTY) {$All{"FPHASE"}="8.5";}
|
|
|
|
|
|
$FOURIER_Block=
|
|
"###############################################################
|
|
FOURIER
|
|
units FUNITS # units either 'Gauss', 'MHz', or 'Mc/s'
|
|
fourier_power 12
|
|
apodization FAPODIZATION # NONE, WEAK, MEDIUM, STRONG
|
|
plot FPLOT # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
|
|
phase FPHASE
|
|
#range FRQMIN FRQMAX";
|
|
|
|
$FOURIER_Block=~ s/FUNITS/$All{"FUNITS"}/g;
|
|
$FOURIER_Block=~ s/FAPODIZATION/$All{"FAPODIZATION"}/g;
|
|
$FOURIER_Block=~ s/FPLOT/$All{"FPLOT"}/g;
|
|
$FOURIER_Block=~ s/FPHASE/$All{"FPHASE"}/g;
|
|
|
|
# Don't know why but it is needed initially
|
|
$STAT_Block =
|
|
"###############################################################
|
|
STATISTIC --- 0000-00-00 00:00:00
|
|
*** FIT DID NOT CONVERGE ***";
|
|
|
|
|
|
# Empty line at the end of each block
|
|
my $FullMSRFile = "$TitleLine$FitParaBlk\n$Full_T_Block\n$FUNCTIONS_Block\n$RUN_Block\n$COMMANDS_Block\n$PLOT_Block\n$FOURIER_Block\n$STAT_Block\n";
|
|
|
|
# Open output file FILENAME.msr
|
|
open( OUTF,q{>},"$FILENAME.msr" );
|
|
print OUTF ("$FullMSRFile");
|
|
close(OUTF);
|
|
return($Full_T_Block,\@Paramcomp);
|
|
}
|
|
|
|
|
|
########################
|
|
# Createheory
|
|
########################
|
|
sub CreateTheory {
|
|
# This subroutine requires:
|
|
# @FitTypes - the array of the types of components (summed)
|
|
|
|
# It will return:
|
|
# $Full_T_Block - the full theory block with names of parameters
|
|
# @Paramcomp - an array of space separated list of parameters
|
|
# each member of the array is one component
|
|
|
|
my (@FitTypes) = @_;
|
|
|
|
# Start from this theory line for the different fitting functions
|
|
my %THEORY = (
|
|
"asymmetry", "Asy",
|
|
"simplExpo", "Lam",
|
|
"generExpo", "Lam Bet",
|
|
"simpleGss", "Sgm",
|
|
"statGssKT", "Sgm",
|
|
"statGssKTLF", "Frqg Sgm",
|
|
"dynGssKTLF", "Frql Sgm Lam",
|
|
"statExpKT", "Lam",
|
|
"statExpKTLF", "Frq Aa",
|
|
"dynExpKTLF", "Frq Aa Lam",
|
|
"combiLGKT", "Lam Sgm",
|
|
"spinGlass", "Lam gam q",
|
|
"rdAnisoHf", "Frq Lam",
|
|
"TFieldCos", "Phi Frq",
|
|
"internFld", "Alp Phi Frq LamT LamL",
|
|
"Bessel", "Phi Frq",
|
|
"internBsl", "Alp Phi Frq LamT LamL",
|
|
"abragam", "Sgm gam",
|
|
"Meissner", "Phi Energy Field DeadLayer Lambda",
|
|
"skewedGss", "Phi Frq Sgmm Sgmp"
|
|
);
|
|
|
|
#######################################################################
|
|
# Generate the full THEORY block
|
|
my $Full_T_Block = $EMPTY;
|
|
my $component = 0;
|
|
foreach my $FitType (@FitTypes) {
|
|
++$component;
|
|
# Add components
|
|
if ( $component > 1 ) {
|
|
$Full_T_Block = $Full_T_Block . "\n+\n";
|
|
}
|
|
|
|
# For each component there is a THEORY block starting with "asymmetry"
|
|
my $T_Block = "asymmetry " . $THEORY{'asymmetry'};
|
|
my $Parameters = $THEORY{'asymmetry'};
|
|
|
|
# Compose the THEORY block
|
|
# The duplicate names are changed for multiplied signals or just
|
|
# change names to match parameters list declared for the function
|
|
|
|
# Stretch exponential
|
|
if ( $FitType eq "Stretch" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
}
|
|
|
|
# Exponential
|
|
elsif ( $FitType eq "Exponential" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
}
|
|
|
|
# Gaussian
|
|
elsif ( $FitType eq "Gaussian" ) {
|
|
$T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
}
|
|
|
|
# Exponential with 0 relaxation
|
|
elsif ( $FitType eq "Background" ) {
|
|
|
|
# Do nothing
|
|
}
|
|
|
|
# Oscillationg exponential
|
|
elsif ( $FitType eq "ExponentialCos" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Oscillationg gaussian
|
|
elsif ( $FitType eq "GaussianCos" ) {
|
|
$T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Oscillationg stretch exponential
|
|
elsif ( $FitType eq "StretchCos" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Oscillationg Gaussian
|
|
elsif ( $FitType eq "GaussianCos" ) {
|
|
$T_Block = $T_Block . "\n" . "simpelGss " . $THEORY{'simpelGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Static Lorentzian KT
|
|
elsif ( $FitType eq "SLKT" ) {
|
|
$T_Block = $T_Block . "\n" . "statExpKT " . $THEORY{'statExpKT'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKT'} );
|
|
}
|
|
|
|
# Static Lorentzian KT LF
|
|
elsif ( $FitType eq "SLKTLF" ) {
|
|
$T_Block =
|
|
$T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} );
|
|
}
|
|
|
|
# Dynamic Lorentzian KT LF
|
|
elsif ( $FitType eq "LDKTLF" ) {
|
|
$T_Block = $T_Block . "\n" . "dynExpKTLF " . $THEORY{'dynExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'dynExpKTLF'} );
|
|
}
|
|
|
|
# Static Gaussian KT
|
|
elsif ( $FitType eq "SGKT" ) {
|
|
$T_Block = $T_Block . "\n" . "statGssKT " . $THEORY{'statGssKT'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKT'} );
|
|
}
|
|
|
|
# Static Gaussian KT LF
|
|
elsif ( $FitType eq "SGKTLF" ) {
|
|
$T_Block =
|
|
$T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} );
|
|
}
|
|
|
|
# Dynamic Gaussian KT LF
|
|
elsif ( $FitType eq "GDKTLF" ) {
|
|
$T_Block = $T_Block . "\n" . "dynGssKTLF " . $THEORY{'dynGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'dynGssKTLF'} );
|
|
}
|
|
|
|
# Now some more combined functions (multiplication).
|
|
|
|
# Lorentzian KT LF multiplied by exponential
|
|
elsif ( $FitType eq "LLFExp" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} );
|
|
}
|
|
|
|
# Lorentzian KT LF multiplied by stretched exponential
|
|
elsif ( $FitType eq "LLFSExp" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} );
|
|
}
|
|
|
|
# Gaussian KT LF multiplied by exponential
|
|
elsif ( $FitType eq "GLFExp" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} );
|
|
}
|
|
|
|
# Gaussian KT LF multiplied by stretched exponential
|
|
elsif ( $FitType eq "GLFSExp" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} );
|
|
}
|
|
|
|
# Lorentzian or Gaussian KT LF multiplied by stretched exponential
|
|
elsif ( $FitType eq "MolMag" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} );
|
|
}
|
|
|
|
# Meissner state model
|
|
elsif ( $FitType eq "Meissner" ) {
|
|
$T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
$T_Block =
|
|
$T_Block . "\n"
|
|
. "userFcn libTFitPofB.so TLondon1DHS "
|
|
. $THEORY{'Meissner'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'Meissner'} );
|
|
}
|
|
|
|
$Paramcomp[ $component - 1 ] = $Parameters;
|
|
$Full_T_Block = $Full_T_Block . $T_Block;
|
|
|
|
# Finished preparing the THEORY block
|
|
#######################################################################
|
|
}
|
|
return($Full_T_Block,\@Paramcomp);
|
|
} # End CreateTheory
|
|
|
|
########################
|
|
# ExtractBlks
|
|
########################
|
|
sub ExtractBlks {
|
|
# This subroutine takes the MSR file as input and extracts the parameters
|
|
# with the corresponding values, errors etc...
|
|
|
|
# Take the msr file as input array of lines
|
|
my @file=@_;
|
|
|
|
my $NFITPARAMETERS=0;
|
|
my $NTHEORY=0;
|
|
my $NRUN=0;
|
|
|
|
# Remove comment lines
|
|
@file = grep {!/^\#/} @file;
|
|
# Remove empty lines
|
|
@file = grep {/\S/} @file;
|
|
|
|
# Identify different blocks
|
|
my $i=0;
|
|
my $line =$EMPTY;
|
|
foreach $line (@file)
|
|
{
|
|
if (grep {/FITPARAMETER/} $line) {$NFITPARAMETERS=$i;}
|
|
if (grep {/THEORY/} $line) { $NTHEORY=$i;}
|
|
if ((grep {/RUN/} $line) & $NRUN==0) { $NRUN=$i;}
|
|
$i++;
|
|
}
|
|
my @FPBlock=@file[$NFITPARAMETERS+1..$NTHEORY-1];
|
|
my @TBlock=@file[$NTHEORY+1..$NRUN-1];
|
|
|
|
# Split parameter's line to extract values and errors
|
|
foreach $line (@FPBlock) {
|
|
my @Param=split(/\s+/,$line);
|
|
}
|
|
|
|
return(\@TBlock,\@FPBlock)
|
|
}
|
|
|
|
|
|
########################
|
|
# T0BgData
|
|
# Function return the defaul value of t0, Bg and Data bin
|
|
# input should be
|
|
# $Name is t0,Bg1,Bg2,Data1,Data2
|
|
# $Hist is the histogram number
|
|
# $BeamLine in the name of beamline
|
|
########################
|
|
sub T0BgData {
|
|
# Take this information as input arguments
|
|
(my $Name, my $Hist, my $BeamLine) = @_;
|
|
|
|
# These are the default values, ordered by beamline
|
|
# Comma at the beginning means take default t0 from file
|
|
# The order is pairs of "HistNumber","t0,Bg1,Bg2,Data1,Data2"
|
|
my %LEM=("1",",66000,66500,3419,63000",
|
|
"2",",66000,66500,3419,63000",
|
|
"3",",66000,66500,3419,63000",
|
|
"4",",66000,66500,3419,63000");
|
|
|
|
my %GPS=("1",",40,120,135,8000",
|
|
"2",",40,120,135,8000",
|
|
"3",",40,120,135,8000",
|
|
"4",",40,120,135,8000");
|
|
|
|
my %Dolly=("1",",50,250,297,8000",
|
|
"2",",50,250,297,8000",
|
|
"3",",50,250,297,8000",
|
|
"4",",50,250,297,8000");
|
|
|
|
my %RV=();
|
|
|
|
# If multiple histograms (sum or difference) take the first histogram only
|
|
my @Hists=split(/ /,$Hist);
|
|
|
|
if ($BeamLine eq "LEM") {
|
|
my $HistParams=$LEM{$Hists[0]};
|
|
($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams);
|
|
}
|
|
elsif ($BeamLine eq "Dolly") {
|
|
my $HistParams=$Dolly{$Hists[0]};
|
|
($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams);
|
|
}
|
|
elsif ($BeamLine eq "GPS") {
|
|
my $HistParams=$GPS{$Hists[0]};
|
|
($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams);
|
|
}
|
|
return $RV{$Name};
|
|
|
|
}
|
|
|
|
########################
|
|
# PrepParamTable
|
|
# Function return a Hash with a table of parameters for the fit
|
|
# input should be
|
|
# %All
|
|
########################
|
|
sub PrepParamTable {
|
|
# Take this information as input arguments
|
|
# "Smart" default value of the fit parameters.
|
|
my %Defaults = (
|
|
"Asy", "0.15", "dAsy", "0.01",
|
|
"Asy_min", "0", "Asy_max", "0",
|
|
"Alpha", "1.0", "dAlpha", "0.01",
|
|
"Alpha_min", "0", "Alpha_max", "0",
|
|
"No", "300.0", "dNo", "0.01",
|
|
"No_min", "0", "No_max", "0",
|
|
"NBg", "30.0", "dNBg", "0.01",
|
|
"NBg_min", "0", "NBg_max", "0",
|
|
"Lam", "1.0", "dLam", "0.01",
|
|
"Lam_min", "0", "Lam_max", "0",
|
|
"Gam", "1.0", "dGam", "0.01",
|
|
"Gam_min", "0", "Gam_max", "0",
|
|
"Bet", "0.5", "dBet", "0.01",
|
|
"Bet_min", "0", "Bet_max", "0",
|
|
"Two", "2.0", "dTwo", "0.0",
|
|
"Two_min", "0", "Two_max", "0",
|
|
"Del", "0.1", "dDel", "0.01",
|
|
"Del_min", "0", "Del_max", "0",
|
|
"Sgm", "0.1", "dSgm", "0.01",
|
|
"Sgm_min", "0", "Sgm_max", "0",
|
|
"Aa", "60.", "dAa", "0.01",
|
|
"Aa_min", "0", "Aa_max", "0",
|
|
"q", "0.1", "dq", "0.01",
|
|
"q_min", "0", "q_max", "0",
|
|
"Bg", "0.036", "dBg", "0.01",
|
|
"Bg_min", "0", "Bg_max", "0",
|
|
"bgrlx", "0.", "dbgrlx", "0.0",
|
|
"bgrlx_min", "0", "bgrlx_max", "0",
|
|
"Frq", "1.0", "dFrq", "1.",
|
|
"Frq_min", "0", "Frq_max", "0",
|
|
"Field", "100.0", "dField", "1.",
|
|
"Field_min", "0", "Field_max", "0",
|
|
"Energy", "14.1", "dEnergy", "0.",
|
|
"Energy_min", "0", "Energy_max", "0",
|
|
"DeadLayer", "10.", "dDeadLayer", "0.1",
|
|
"DeadLayer_min", "0", "DeadLayer_max", "0",
|
|
"Lambda", "128.1", "dLambda", "0.1",
|
|
"Lambda_min", "0", "Lambda_max", "0",
|
|
"Phi", "1.", "dPhi", "0.01",
|
|
"Phi_min", "0", "Phi_max", "0"
|
|
);
|
|
|
|
my $erradd = "d";
|
|
my $minadd = "_min";
|
|
my $maxadd = "_max";
|
|
|
|
# First assume nothing is shared
|
|
my $Shared = 0;
|
|
|
|
# Reset output Hash
|
|
%ParTable = ();
|
|
|
|
my %All = %{$_[0]};
|
|
my @RUNS = ();
|
|
if ($All{"RUNSType"}) {
|
|
@RUNS = split( /,/, $All{"RunFiles"} );
|
|
} else {
|
|
@RUNS = split( /,/, $All{"RunNumbers"} );
|
|
}
|
|
my @Hists = split( /,/, $All{"LRBF"} );
|
|
|
|
my @FitTypes =();
|
|
foreach my $FitType ($All{"FitType1"}, $All{"FitType2"}, $All{"FitType3"}) {
|
|
if ( $FitType ne "None" ) { push( @FitTypes, $FitType ); }
|
|
}
|
|
# Get theory block to determine the size of the table
|
|
my ($Full_T_Block,$Paramcomp_ref)= MSR::CreateTheory(@FitTypes);
|
|
# For now the line below does not work. Why?
|
|
# my $Paramcomp_ref=$All{"Paramcomp_ref"};
|
|
my @Paramcomp = @$Paramcomp_ref;
|
|
my $Full_T_Block= $All{"Full_T_Block"};
|
|
my $PCount =0;
|
|
my $iRun =0;
|
|
my $value =0;
|
|
my $error = 0;
|
|
my $minvalue = 0;
|
|
my $maxvalue = 0;
|
|
my $Component=1;
|
|
|
|
foreach my $RUN (@RUNS) {
|
|
$iRun++;
|
|
$Component=1;
|
|
if ($All{"FitAsyType"} eq "Asymmetry") {
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, "Alpha" );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
if ( $#FitTypes != 0 && ( $Param ne "Alpha" ) ){
|
|
$Param = join( $EMPTY, $Param, "_", "$Component" );
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. If not take from defaults
|
|
$value = $All{"$Param"};
|
|
if ( $value ne $EMPTY ) {
|
|
$error = $All{"$erradd$Param"};
|
|
$minvalue = $All{"$Param$minadd"};
|
|
$maxvalue = $All{"$Param$maxadd"};
|
|
} else {
|
|
# I need this although it is already in the MSR.pm module, just for this table
|
|
# We can remove it from the MSR module later...
|
|
# Or keep in the MSR as function ??
|
|
|
|
# We have two options here, either take default values or take values of previous
|
|
# run if available
|
|
# $ParamPrev =~ s/$iRun-1/$iRun/g;
|
|
$value = $Defaults{$Param_ORG};
|
|
$error = $Defaults{ join( $EMPTY, $erradd, $Param_ORG ) };
|
|
$minvalue = $Defaults{ join($EMPTY, $Param_ORG, $minadd ) };
|
|
$maxvalue = $Defaults{ join($EMPTY, $Param_ORG, $maxadd ) };
|
|
}
|
|
$values=join(",",$Param,$value,$error,$minvalue,$maxvalue,$RUN);
|
|
$ParTable{$PCount}=$values;
|
|
$PCount++;
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
elsif ($All{"FitAsyType"} eq "SingleHist") {
|
|
# For a single histogram fit we basically need to repeat this for each hist
|
|
foreach my $Hist (@Hists) {
|
|
$Component=1;
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, ( "No", "NBg" ) );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
# If multiple histograms (sum or difference) take the first histogram only
|
|
($Hist,$tmp) = split(/ /,$Hist);
|
|
$Param=$Param.$Hist;
|
|
if ( $#FitTypes != 0 && ( $Param_ORG ne "No" && $Param_ORG ne "NBg" ) ){
|
|
$Param = join( $EMPTY, $Param, "_", "$Component" );
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. If not take from defaults
|
|
$value = $All{"$Param"};
|
|
if ( $value ne $EMPTY ) {
|
|
$error = $All{"$erradd$Param"};
|
|
$minvalue = $All{"$Param$minadd"};
|
|
$maxvalue = $All{"$Param$maxadd"};
|
|
} else {
|
|
# I need this although it is already in the MSR.pm module, just for this table
|
|
# We can remove it from the MSR module later...
|
|
# Or keep in the MSR as function ??
|
|
$value = $Defaults{$Param_ORG};
|
|
$error = $Defaults{ join( $EMPTY, $erradd, $Param_ORG ) };
|
|
$minvalue = $Defaults{ join($EMPTY, $Param_ORG, $minadd ) };
|
|
$maxvalue = $Defaults{ join($EMPTY, $Param_ORG, $maxadd ) };
|
|
}
|
|
$values=join(",",$Param,$value,$error,$minvalue,$maxvalue,$RUN);
|
|
$ParTable{$PCount}=$values;
|
|
$PCount++;
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
}
|
|
|
|
}
|
|
return %ParTable;
|
|
}
|
|
|
|
|
|
########################
|
|
# ExportParams
|
|
# Function return a tab separated table of parameters for the fit
|
|
# input should be
|
|
# %All
|
|
########################
|
|
sub ExportParams {
|
|
my $erradd = "d";
|
|
my $minadd = "_min";
|
|
my $maxadd = "_max";
|
|
|
|
# First assume nothing is shared
|
|
my $Shared = 0;
|
|
|
|
my $TABLE=$EMPTY;
|
|
my $HEADER="RUN";
|
|
|
|
my %All = %{$_[0]};
|
|
my @RUNS = ();
|
|
if ($All{"RUNSType"}) {
|
|
@RUNS = split( /,/, $All{"RunFiles"} );
|
|
} else {
|
|
@RUNS = split( /,/, $All{"RunNumbers"} );
|
|
}
|
|
my @Hists = split( /,/, $All{"LRBF"} );
|
|
|
|
my @FitTypes =();
|
|
foreach my $FitType ($All{"FitType1"}, $All{"FitType2"}, $All{"FitType3"}) {
|
|
if ( $FitType ne "None" ) { push( @FitTypes, $FitType ); }
|
|
}
|
|
# Get theory block to determine the size of the table
|
|
my ($Full_T_Block,$Paramcomp_ref)= MSR::CreateTheory(@FitTypes);
|
|
# For now the line below does not work. Why?
|
|
# my $Paramcomp_ref=$All{"Paramcomp_ref"};
|
|
my @Paramcomp = @$Paramcomp_ref;
|
|
my $Full_T_Block= $All{"Full_T_Block"};
|
|
|
|
# Extract parameter block form the MSR file
|
|
# my $FILENAME=$All{"FILENAME"};
|
|
# open (MSRF,q{<},"$FILENAME.msr" );
|
|
# my @lines = <MSRF>;
|
|
# close(IFILE);
|
|
# my $FPBlock_ref=MSR::ExtractBlks(@lines);
|
|
# my @FPBloc = @$FPBlock_ref;
|
|
|
|
# Then loop over expected parameters and extract their values and error bar
|
|
my $PCount =0;
|
|
my $iRun =0;
|
|
my $value =0;
|
|
my $error = 0;
|
|
my $minvalue = 0;
|
|
my $maxvalue = 0;
|
|
my $Component=1;
|
|
|
|
foreach my $RUN (@RUNS) {
|
|
my $line="$RUN";
|
|
$iRun++;
|
|
$Component=1;
|
|
if ($All{"FitAsyType"} eq "Asymmetry") {
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, "Alpha" );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
if ( $#FitTypes != 0 && ( $Param ne "Alpha" ) ){
|
|
$Param = join( $EMPTY, $Param, "_", "$Component" );
|
|
}
|
|
# $All{"Header"} - 0/1 for with/without header
|
|
if ($All{"Header"} && $iRun == 1) {
|
|
$HEADER=join("\t",$HEADER,$Param,"$erradd$Param");
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. (should be)
|
|
$value = $All{"$Param"};
|
|
$error = $All{"$erradd$Param"};
|
|
|
|
$line=join("\t",$line,$value,$error);
|
|
$PCount++;
|
|
}
|
|
elsif ($Shared==1) {
|
|
# The parameter is shared, take the value from the first run
|
|
$Param=$Param."_1";
|
|
$value = $All{"$Param"};
|
|
$error = $All{"$erradd$Param"};
|
|
$line=join("\t",$line,$value,$error);
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
elsif ($All{"FitAsyType"} eq "SingleHist") {
|
|
# For a single histogram fit we basically need to repeat this for each hist
|
|
foreach my $Hist (@Hists) {
|
|
$Component=1;
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, ( "No", "NBg" ) );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
$Param=$Param.$Hist;
|
|
if ( $#FitTypes != 0 && ( $Param_ORG ne "No" && $Param_ORG ne "NBg" ) ){
|
|
$Param = join( $EMPTY, $Param, "_", "$Component" );
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. (should be)
|
|
$value = $All{"$Param"};
|
|
$error = $All{"$erradd$Param"};
|
|
$minvalue = $All{"$Param$minadd"};
|
|
$maxvalue = $All{"$Param$maxadd"};
|
|
|
|
$values=join("\t",$Param,$value,$error,$minvalue,$maxvalue,$RUN);
|
|
$ParTable{$PCount}=$values;
|
|
$PCount++;
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
}
|
|
$TABLE=$TABLE."$line\n"
|
|
}
|
|
if ($All{"Header"}) {
|
|
$TABLE=$HEADER."\n".$TABLE;
|
|
}
|
|
|
|
return $TABLE;
|
|
}
|
|
|
|
########################
|
|
# MSR2Dat
|
|
# Function return a tab separated table of parameters from an MSR file
|
|
# input should be
|
|
# @msrfile
|
|
########################
|
|
sub MSR2Dat {
|
|
# Take the msr file as input array of lines
|
|
my @file=@_;
|
|
|
|
# Extract PRAMETERS and THEORY Blocks
|
|
(my $TBlock_ref, my $FPBlock_ref)=MSR::ExtractBlks(@file);
|
|
my @FPBlock = @$FPBlock_ref;
|
|
my @TBlock = @$TBlock_ref;
|
|
|
|
# Get shared parameters
|
|
foreach $TLine (@TBlock) {
|
|
# Then split it to find numbers of shared parameters
|
|
@tmp=split(/\s+/,$TLine);
|
|
foreach (@tmp) {
|
|
if ($_ eq $_+0 ) {
|
|
# This is a number, keep it in the Shared arry
|
|
@Shared=(@Shared,$_);
|
|
}
|
|
}
|
|
}
|
|
|
|
# Nice trick, make a hash for unique RUN lines
|
|
# Find spectrum lines
|
|
my @MAPS = grep {/map /} @file;
|
|
my @RUNS = grep {/RUN/} @file;
|
|
my $counter=0;
|
|
foreach $key (@RUNS){
|
|
# This gets rid of duplicates
|
|
$RUN{$key}=$counter;
|
|
$MAP{$key}=$MAPS[$counter];
|
|
$counter++;
|
|
}
|
|
|
|
# Number of runs (or independent sets of parameters) in this file
|
|
my $NRuns=1;
|
|
foreach (sort { $RUN{$a} <=> $RUN{$b}} keys %RUN ) {
|
|
@RunParams=();
|
|
$NP=0;
|
|
@tmp=split(/\s+/,$MAP{$_});
|
|
# Remove first element (map)
|
|
shift(@tmp);
|
|
foreach (@tmp) {
|
|
if ($_ ne $EMPTY && $_>0 ) {
|
|
@RunParams=(@RunParams,$_);
|
|
$NP++;
|
|
}
|
|
}
|
|
if ($NP>0) {
|
|
$orders=join(",",@RunParams);
|
|
$RUNParams[$NRuns]=$orders;
|
|
$NRuns++;
|
|
}
|
|
}
|
|
|
|
# Split parameter's line to extract values and errors
|
|
foreach $line (@FPBlock) {
|
|
@Param=split(/\s+/,$line);
|
|
# Create a hash with the parameter order as a key
|
|
# and the value and error as value
|
|
$P{$Param[1]}=$Param[3].",".$Param[4];
|
|
$PName{$Param[1]}=$Param[2];
|
|
}
|
|
|
|
# Now we have everything. Lets start ordering
|
|
# First lines is names
|
|
@Pnum=split(/,/,$RUNParams[1]);
|
|
foreach (@Pnum,@Shared) {
|
|
$DatFile=join("\t",$DatFile,$PName{$_},"d".$PName{$_});
|
|
}
|
|
$DatFile=$DatFile."\n";
|
|
|
|
# For the values from all the files.
|
|
# I am not checking if all the files have the same theory function
|
|
for ($i=1;$i<=$NRuns-1;$i++) {
|
|
@Pnum=split(/,/,$RUNParams[$i]);
|
|
# First go for the shared parameters
|
|
foreach (@Pnum,@Shared) {
|
|
($value,$err)=split(/,/,$P{$_});
|
|
$DatFile=join("\t",$DatFile,$value,$err);
|
|
}
|
|
$DatFile=$DatFile."\n";
|
|
}
|
|
return $DatFile;
|
|
}
|
|
|
|
|
|
########################
|
|
# RUNFileNameAuto
|
|
# Function return the RUN_Line for a given RUN
|
|
# input should be
|
|
# $RUN is the run number
|
|
# $YEAR is the year
|
|
# $BeamLine in the name of beamline
|
|
########################
|
|
sub RUNFileNameAuto {
|
|
# Take this information as input arguments
|
|
(my $RUN, my $YEAR, my $BeamLine) = @_;
|
|
|
|
my $DATADIR = $DATADIRS{$BeamLine};
|
|
my $RUNtmp = $EMPTY;
|
|
if ( $RUN < 10 ) { $RUNtmp = "000" . $RUN; }
|
|
elsif ( $RUN < 100 ) { $RUNtmp = "00" . $RUN; }
|
|
elsif ( $RUN < 1000 ) { $RUNtmp = "0" . $RUN; }
|
|
else { $RUNtmp=$RUN; }
|
|
|
|
# Get current year
|
|
my ( $sec, $min, $hour, $mday, $mon, $year, $wday, $yday, $isdst ) =
|
|
localtime( time() );
|
|
my $current_year = $year + 1900;
|
|
|
|
if ( $BeamLine eq "LEM" ) {
|
|
$RUN_File_Name = "lem" . substr( $YEAR, 2 ) . "_his_" . $RUNtmp;
|
|
$RUNFILE = "$DATADIR/$YEAR/$RUN_File_Name";
|
|
}
|
|
elsif ( $BeamLine eq "GPS" ) {
|
|
$RUN_File_Name = "deltat_tdc_gps_" . $RUNtmp;
|
|
$RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name";
|
|
}
|
|
elsif ( $BeamLine eq "LTF" ) {
|
|
$RUN_File_Name = "deltat_tdc_ltf_" . $RUNtmp;
|
|
$RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name";
|
|
}
|
|
elsif ( $BeamLine eq "Dolly" ) {
|
|
$RUN_File_Name = "deltat_tdc_dolly_" . $RUNtmp;
|
|
$RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name";
|
|
}
|
|
elsif ( $BeamLine eq "GPD" ) {
|
|
$RUN_File_Name = "deltat_tdc_gpd_" . $RUNtmp;
|
|
$RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name";
|
|
}
|
|
my $RUN_Line = join( $SPACE,
|
|
"RUN", $RUNFILE, $BeamLines{$BeamLine}, "PSI",
|
|
$Def_Format{$BeamLine} );
|
|
|
|
return $RUN_Line;
|
|
}
|
|
|
|
########################
|
|
# RUNFileNameMan
|
|
# Function return the RUN_Line for a given RUN
|
|
# input should be
|
|
# $RUN is the run number
|
|
# $YEAR is the year
|
|
# $BeamLine in the name of beamline
|
|
########################
|
|
sub RUNFileNameMan {
|
|
my %EXTs = ("root","ROOT-NPP",
|
|
"bin","PSI-BIN",
|
|
"msr","MUD");
|
|
|
|
# Take this information as input arguments
|
|
(my $RUN) = @_;
|
|
my @tmp = split(/\./,$RUN);
|
|
my $EXT = @tmp[$#tmp];
|
|
|
|
$RUN =~ s/\.[^.]+$//;
|
|
|
|
my $RUN_Line = join( $SPACE,
|
|
"RUN", $RUN, "MUE4", "PSI",$EXTs{$EXT});
|
|
|
|
return $RUN_Line;
|
|
}
|
|
|
|
########################
|
|
# ExtractInfoLEM
|
|
########################
|
|
# This creates the RRF related lines, these are the same always
|
|
sub CreateRRFBlock {
|
|
|
|
my %All = %{$_[0]};
|
|
|
|
$RRFBlock="";
|
|
if ($All{"RRFFrq"}!= 0) {
|
|
if ($All{"RRFPhase"} eq $EMPTY) {$All{"RRFPhase"}=0;}
|
|
if ($All{"RRFPack"} eq $EMPTY) {$All{"RRFPack"}=1;}
|
|
$RRFBlock="rrf_freq ".$All{"RRFFrq"}." ".$All{"RRFUnits"}."\n";
|
|
$RRFBlock=$RRFBlock."rrf_phase ".$All{"RRFPhase"}."\n";
|
|
$RRFBlock=$RRFBlock."rrf_packing ".$All{"RRFPack"}."\n";
|
|
}
|
|
return $RRFBlock;
|
|
}
|
|
|
|
|
|
|
|
|
|
########################
|
|
# ExtractInfoLEM
|
|
########################
|
|
# Uset to extract information from summary files
|
|
sub ExtractInfoLEM {
|
|
my ($RUN,$YEAR,$Arg) = @_;
|
|
my $Summ_File_Name = "lem" . substr( $YEAR, 2 ) . "_" . $RUN . ".summ";
|
|
my $SummFile = "$SUMM_DIR/$YEAR/$Summ_File_Name";
|
|
|
|
open( SFILE,q{<}, "$SummFile" );
|
|
my @lines = <SFILE>;
|
|
close(SFILE);
|
|
|
|
if ( $Arg eq "TITLE" ) {
|
|
$RTRN_Val = $lines[3];
|
|
$RTRN_Val =~ s/\n//g;
|
|
}
|
|
elsif ( $Arg eq "Temp" ) {
|
|
foreach my $line (@lines) {
|
|
if ( $line =~ /Mean Sample_CF1/ ) {
|
|
( my $tmp, my $T ) = split( /=/, $line );
|
|
( $T, $tmp ) = split( /\(/, $T );
|
|
$RTRN_Val = $T;
|
|
}
|
|
}
|
|
|
|
}
|
|
elsif ( $Arg eq "Field" ) {
|
|
foreach my $line (@lines) {
|
|
if ( $line =~ /Mean B field/ ) {
|
|
( $tmp, my $B ) = split( /=/, $line );
|
|
( $B, $tmp ) = split( /\(/, $B );
|
|
$RTRN_Val = $B;
|
|
}
|
|
}
|
|
}
|
|
elsif ( $Arg eq "Energy" ) {
|
|
foreach my $line (@lines) {
|
|
if ( $line =~ /implantation energy/ ) {
|
|
( my $tmp1, my $tmp2, my $E ) = split( /=/, $line );
|
|
( $E, $tmp ) = split( /keV/, $E );
|
|
$RTRN_Val = $E;
|
|
}
|
|
}
|
|
|
|
}
|
|
# $RTRN_Val =~ s/[\.\~\/\&\*\[\;\>\<\^\$\(\)\`\|\]\'\@]//g;
|
|
return $RTRN_Val;
|
|
}
|
|
|
|
# Uset to extract information from log files
|
|
sub ExtractInfoBulk {
|
|
my ($RUN,$AREA,$YEAR,$Arg) = @_;
|
|
if ($RUN < 10) { $RUN = "000".$RUN; }
|
|
elsif ($RUN < 100) { $RUN = "00".$RUN; }
|
|
elsif ($RUN < 1000) { $RUN = "0".$RUN; }
|
|
|
|
# Information may be found in these file
|
|
my $DBFILE=$DBDIR{$AREA}.$YEAR."/*.runs";
|
|
my @Lines =`cat $DBFILE`;
|
|
|
|
# Select intries with the right area
|
|
my $area=lc $AREA;
|
|
my @Lines1 = grep { /$area/ } @Lines;
|
|
my @Lines2 = grep { /$AltArea{$AREA}/ } @Lines;
|
|
@Lines=(@Lines1,@Lines2);
|
|
# Select intries with the right run number
|
|
@Lines = grep { /$RUN/ } @Lines;
|
|
@Words=split(/\s+/,$Lines[0]);
|
|
|
|
if ( $Arg eq "TITLE" ) {
|
|
$RTRN_Val = substr($Lines[0],104);
|
|
}
|
|
elsif ( $Arg eq "Temp" ) {
|
|
$RTRN_Val = $Words[6];
|
|
}
|
|
elsif ( $Arg eq "Field" ) {
|
|
$RTRN_Val = $Words[7];
|
|
}
|
|
|
|
return $RTRN_Val;
|
|
}
|
|
|
|
|
|
|
|
|
|
1;
|