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<a href="#func-members">Functions</a> &#124;
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<div class="textblock"><code>#include &lt;cstdio&gt;</code><br />
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<code>#include &lt;TSystemFile.h&gt;</code><br />
<code>#include &lt;TThread.h&gt;</code><br />
<code>#include &quot;<a class="el" href="PMusr_8h_source.html">PMusr.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="PStartupHandler_8h_source.html">PStartupHandler.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="PMsrHandler_8h_source.html">PMsrHandler.h</a>&quot;</code><br />
<code>#include &quot;<a class="el" href="PRunDataHandler_8h_source.html">PRunDataHandler.h</a>&quot;</code><br />
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<p><a href="musrfit_8cpp_source.html">Go to the source code of this file.</a></p>
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Functions</h2></td></tr>
<tr class="memitem:a82d0f397af9d67283cf3109a837e8361" id="r_a82d0f397af9d67283cf3109a837e8361"><td class="memItemLeft" align="right" valign="top">void *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a82d0f397af9d67283cf3109a837e8361">musrfit_timeout</a> (void *args)</td></tr>
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<tr class="memitem:ada0e5255e2e1889947bab9469353374c" id="r_ada0e5255e2e1889947bab9469353374c"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#ada0e5255e2e1889947bab9469353374c">musrfit_syntax</a> ()</td></tr>
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<tr class="memitem:a28473bfc4ad2649e543b81dc04ec6c3b" id="r_a28473bfc4ad2649e543b81dc04ec6c3b"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a> (TString fln, <a class="el" href="classPRunData.html">PRunData</a> *data, int runCounter)</td></tr>
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<tr class="memitem:a55b68c56dd43f16e244742118149f1d5" id="r_a55b68c56dd43f16e244742118149f1d5"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a55b68c56dd43f16e244742118149f1d5">musrfit_dump_ascii</a> (const char *fileName, <a class="el" href="classPRunListCollection.html">PRunListCollection</a> *runList)</td></tr>
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<tr class="memitem:a866ad67e737e5eab3027d1c0c11e3fdd" id="r_a866ad67e737e5eab3027d1c0c11e3fdd"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a> (TFile &amp;f, TString fln, <a class="el" href="classPRunData.html">PRunData</a> *data, int runCounter)</td></tr>
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<tr class="memitem:a9f3bf8323e7fb921cd2509b8caa29bf6" id="r_a9f3bf8323e7fb921cd2509b8caa29bf6"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a9f3bf8323e7fb921cd2509b8caa29bf6">musrfit_dump_root</a> (const char *fileName, <a class="el" href="classPRunListCollection.html">PRunListCollection</a> *runList)</td></tr>
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<tr class="memitem:a0ddf1224851353fc92bfbff6f499fa97" id="r_a0ddf1224851353fc92bfbff6f499fa97"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a0ddf1224851353fc92bfbff6f499fa97">main</a> (int argc, char *argv[])</td></tr>
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Variables</h2></td></tr>
<tr class="memitem:a493b57f443cc38b3d3df9c1e584d9d82" id="r_a493b57f443cc38b3d3df9c1e584d9d82"><td class="memItemLeft" align="right" valign="top">static int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="#a493b57f443cc38b3d3df9c1e584d9d82">timeout</a> = 3600</td></tr>
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<h2 class="groupheader">Function Documentation</h2>
<a id="a0ddf1224851353fc92bfbff6f499fa97" name="a0ddf1224851353fc92bfbff6f499fa97"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a0ddf1224851353fc92bfbff6f499fa97">&#9670;&#160;</a></span>main()</h2>
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<td class="memname">int main </td>
<td>(</td>
<td class="paramtype">int</td> <td class="paramname"><span class="paramname"><em>argc</em></span>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype">char *</td> <td class="paramname"><span class="paramname"><em>argv</em></span>[]&#160;)</td>
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<p>The musrfit program is used to fit muSR data. For a detailed description/usage of the program, please see <a href="http://lmu.web.psi.ch/musrfit/user/html/user-manual.html#musrfit">musrfit online help</a>
</p>
<p><b>return:</b></p><ul>
<li>PMUSR_SUCCESS if everthing went smooth</li>
<li>PMUSR_WRONG_STARTUP_SYNTAX if syntax error is encountered</li>
<li>line number if an error in the msr-file was encountered which cannot be handled.</li>
</ul>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">argc</td><td>number of input arguments </td></tr>
<tr><td class="paramname">argv</td><td>list of input arguments </td></tr>
</table>
</dd>
</dl>
<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00445">445</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">References <a class="el" href="PMusr_8h_source.html#l01398">PStartupOptions::estimateN0</a>, <a class="el" href="PMusr_8h_source.html#l00859">PRawRunData::GetRunTitle()</a>, <a class="el" href="PMusr_8h_source.html#l00429">kFit</a>, <a class="el" href="musrfit_8cpp_source.html#l00192">musrfit_dump_ascii()</a>, <a class="el" href="musrfit_8cpp_source.html#l00335">musrfit_dump_root()</a>, <a class="el" href="musrfit_8cpp_source.html#l00096">musrfit_syntax()</a>, <a class="el" href="musrfit_8cpp_source.html#l00079">musrfit_timeout()</a>, <a class="el" href="PStartupHandler_8h.html#a2f473e587e18e6a64b260870ec870a5e">parseXmlFile()</a>, <a class="el" href="PMusr_8h_source.html#l00064">PMUSR_MSR_FILE_NOT_FOUND</a>, <a class="el" href="PMusr_8h_source.html#l00072">PMUSR_MSR_LOG_FILE_WRITE_ERROR</a>, <a class="el" href="PMusr_8h_source.html#l00068">PMUSR_MSR_SYNTAX_ERROR</a>, <a class="el" href="PMusr_8h_source.html#l00058">PMUSR_SUCCESS</a>, <a class="el" href="PMusr_8h_source.html#l00070">PMUSR_TOKENIZE_ERROR</a>, <a class="el" href="PMusr_8h_source.html#l00062">PMUSR_WRONG_STARTUP_SYNTAX</a>, <a class="el" href="PStartupHandler_8cpp_source.html#l00083">startup_path_name</a>, <a class="el" href="PStartupHandler_8cpp_source.html#l00105">status</a>, <a class="el" href="musrfit_8cpp_source.html#l00072">timeout</a>, and <a class="el" href="PMusr_8h_source.html#l01397">PStartupOptions::writeExpectedChisq</a>.</p>
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<a id="a55b68c56dd43f16e244742118149f1d5" name="a55b68c56dd43f16e244742118149f1d5"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a55b68c56dd43f16e244742118149f1d5">&#9670;&#160;</a></span>musrfit_dump_ascii()</h2>
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<td class="memname">void musrfit_dump_ascii </td>
<td>(</td>
<td class="paramtype">const char *</td> <td class="paramname"><span class="paramname"><em>fileName</em></span>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="classPRunListCollection.html">PRunListCollection</a> *</td> <td class="paramname"><span class="paramname"><em>runList</em></span>&#160;)</td>
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<p>Go through all msr-file runs and write each of them in ascii-format to disc (used for diagnostics). Be aware that this output is <b>different</b> to what you will get when using musrview!</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">fileName</td><td>file name </td></tr>
<tr><td class="paramname">runList</td><td>run list collection handler </td></tr>
</table>
</dd>
</dl>
<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00192">192</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">References <a class="el" href="PRunListCollection_8cpp_source.html#l01069">PRunListCollection::GetAsymmetry()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01155">PRunListCollection::GetAsymmetryRRF()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01198">PRunListCollection::GetMuMinus()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01240">PRunListCollection::GetNonMusr()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00466">PRunListCollection::GetNoOfAsymmetry()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00472">PRunListCollection::GetNoOfAsymmetryRRF()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00484">PRunListCollection::GetNoOfMuMinus()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00490">PRunListCollection::GetNoOfNonMusr()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00454">PRunListCollection::GetNoOfSingleHisto()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00460">PRunListCollection::GetNoOfSingleHistoRRF()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l00983">PRunListCollection::GetSingleHisto()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01026">PRunListCollection::GetSingleHistoRRF()</a>, and <a class="el" href="musrfit_8cpp_source.html#l00152">musrfit_write_ascii()</a>.</p>
<p class="reference">Referenced by <a class="el" href="musrfit_8cpp_source.html#l00445">main()</a>.</p>
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<a id="a9f3bf8323e7fb921cd2509b8caa29bf6" name="a9f3bf8323e7fb921cd2509b8caa29bf6"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a9f3bf8323e7fb921cd2509b8caa29bf6">&#9670;&#160;</a></span>musrfit_dump_root()</h2>
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<td class="memname">void musrfit_dump_root </td>
<td>(</td>
<td class="paramtype">const char *</td> <td class="paramname"><span class="paramname"><em>fileName</em></span>, </td>
</tr>
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<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="classPRunListCollection.html">PRunListCollection</a> *</td> <td class="paramname"><span class="paramname"><em>runList</em></span>&#160;)</td>
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<p>Go through all msr-file runs and write each of them in root format to disc (used for diagnostics). Be aware that this output is <b>different</b> to what you will get when using musrview!</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">fileName</td><td>file name </td></tr>
<tr><td class="paramname">runList</td><td>run list connection handler </td></tr>
</table>
</dd>
</dl>
<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00335">335</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">References <a class="el" href="PRunListCollection_8cpp_source.html#l01069">PRunListCollection::GetAsymmetry()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01155">PRunListCollection::GetAsymmetryRRF()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01198">PRunListCollection::GetMuMinus()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01240">PRunListCollection::GetNonMusr()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00466">PRunListCollection::GetNoOfAsymmetry()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00472">PRunListCollection::GetNoOfAsymmetryRRF()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00484">PRunListCollection::GetNoOfMuMinus()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00490">PRunListCollection::GetNoOfNonMusr()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00454">PRunListCollection::GetNoOfSingleHisto()</a>, <a class="el" href="PRunListCollection_8h_source.html#l00460">PRunListCollection::GetNoOfSingleHistoRRF()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l00983">PRunListCollection::GetSingleHisto()</a>, <a class="el" href="PRunListCollection_8cpp_source.html#l01026">PRunListCollection::GetSingleHistoRRF()</a>, and <a class="el" href="musrfit_8cpp_source.html#l00290">musrfit_write_root()</a>.</p>
<p class="reference">Referenced by <a class="el" href="musrfit_8cpp_source.html#l00445">main()</a>.</p>
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<a id="ada0e5255e2e1889947bab9469353374c" name="ada0e5255e2e1889947bab9469353374c"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ada0e5255e2e1889947bab9469353374c">&#9670;&#160;</a></span>musrfit_syntax()</h2>
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<td class="memname">void musrfit_syntax </td>
<td>(</td>
<td class="paramname"><span class="paramname"><em></em></span></td><td>)</td>
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<p>Sends the usage description to the standard output. </p>
<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00096">96</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">References <a class="el" href="musrfit_8cpp_source.html#l00072">timeout</a>.</p>
<p class="reference">Referenced by <a class="el" href="musrfit_8cpp_source.html#l00445">main()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a82d0f397af9d67283cf3109a837e8361">&#9670;&#160;</a></span>musrfit_timeout()</h2>
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<td class="memname">void * musrfit_timeout </td>
<td>(</td>
<td class="paramtype">void *</td> <td class="paramname"><span class="paramname"><em>args</em></span></td><td>)</td>
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<p>Sometimes musrfit is not terminating properly for reasons still not pinned down, hence this workaround. It should be removed asap. Especially since it is leading to memory leaks. </p>
<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00079">79</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">References <a class="el" href="musrfit_8cpp_source.html#l00072">timeout</a>.</p>
<p class="reference">Referenced by <a class="el" href="musrfit_8cpp_source.html#l00445">main()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a28473bfc4ad2649e543b81dc04ec6c3b">&#9670;&#160;</a></span>musrfit_write_ascii()</h2>
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<td class="memname">void musrfit_write_ascii </td>
<td>(</td>
<td class="paramtype">TString</td> <td class="paramname"><span class="paramname"><em>fln</em></span>, </td>
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<td class="paramkey"></td>
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<td class="paramtype"><a class="el" href="classPRunData.html">PRunData</a> *</td> <td class="paramname"><span class="paramname"><em>data</em></span>, </td>
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<td class="paramkey"></td>
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<td class="paramtype">int</td> <td class="paramname"><span class="paramname"><em>runCounter</em></span>&#160;)</td>
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<p>Writes the fitted data- and theory-set in ascii format to disc.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">fln</td><td>output file name </td></tr>
<tr><td class="paramname">data</td><td>processed-data handler </td></tr>
<tr><td class="paramname">runCounter</td><td>msr-file run counter needed to form the output file name </td></tr>
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</dd>
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<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00152">152</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">References <a class="el" href="PMusr_8h_source.html#l00471">PRunData::GetDataTimeStart()</a>, <a class="el" href="PMusr_8h_source.html#l00473">PRunData::GetDataTimeStep()</a>, <a class="el" href="PMusr_8h_source.html#l00484">PRunData::GetError()</a>, <a class="el" href="PMusr_8h_source.html#l00488">PRunData::GetTheory()</a>, and <a class="el" href="PMusr_8h_source.html#l00482">PRunData::GetValue()</a>.</p>
<p class="reference">Referenced by <a class="el" href="musrfit_8cpp_source.html#l00192">musrfit_dump_ascii()</a>.</p>
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<h2 class="memtitle"><span class="permalink"><a href="#a866ad67e737e5eab3027d1c0c11e3fdd">&#9670;&#160;</a></span>musrfit_write_root()</h2>
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<td class="memname">void musrfit_write_root </td>
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<td class="paramtype">TFile &amp;</td> <td class="paramname"><span class="paramname"><em>f</em></span>, </td>
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<td class="paramtype">TString</td> <td class="paramname"><span class="paramname"><em>fln</em></span>, </td>
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<td class="paramtype"><a class="el" href="classPRunData.html">PRunData</a> *</td> <td class="paramname"><span class="paramname"><em>data</em></span>, </td>
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<td class="paramtype">int</td> <td class="paramname"><span class="paramname"><em>runCounter</em></span>&#160;)</td>
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<p>Writes the fitted data- and theory-set in root format to disc.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramname">f</td><td>root file object </td></tr>
<tr><td class="paramname">fln</td><td>file name </td></tr>
<tr><td class="paramname">data</td><td>processed-data handler </td></tr>
<tr><td class="paramname">runCounter</td><td>msr-file run counter needed to form the output file name </td></tr>
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<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00290">290</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">References <a class="el" href="PMusr_8h_source.html#l00473">PRunData::GetDataTimeStep()</a>, <a class="el" href="PMusr_8h_source.html#l00484">PRunData::GetError()</a>, <a class="el" href="PMusr_8h_source.html#l00488">PRunData::GetTheory()</a>, and <a class="el" href="PMusr_8h_source.html#l00482">PRunData::GetValue()</a>.</p>
<p class="reference">Referenced by <a class="el" href="musrfit_8cpp_source.html#l00335">musrfit_dump_root()</a>.</p>
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<h2 class="groupheader">Variable Documentation</h2>
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<h2 class="memtitle"><span class="permalink"><a href="#a493b57f443cc38b3d3df9c1e584d9d82">&#9670;&#160;</a></span>timeout</h2>
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<td class="memname">int timeout = 3600</td>
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<span class="mlabels"><span class="mlabel static">static</span></span> </td>
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<p class="definition">Definition at line <a class="el" href="musrfit_8cpp_source.html#l00072">72</a> of file <a class="el" href="musrfit_8cpp_source.html">musrfit.cpp</a>.</p>
<p class="reference">Referenced by <a class="el" href="musrfit_8cpp_source.html#l00445">main()</a>, <a class="el" href="musrt0_8cpp_source.html#l00180">main()</a>, <a class="el" href="musrfit_8cpp_source.html#l00096">musrfit_syntax()</a>, <a class="el" href="musrfit_8cpp_source.html#l00079">musrfit_timeout()</a>, <a class="el" href="musrt0_8cpp_source.html#l00097">musrt0_item()</a>, <a class="el" href="PFourierCanvas_8cpp_source.html#l00624">PFourierCanvas::SetTimeout()</a>, <a class="el" href="PMusrCanvas_8cpp_source.html#l00457">PMusrCanvas::SetTimeout()</a>, and <a class="el" href="PMusrT0_8cpp_source.html#l00650">PMusrT0::SetTimeout()</a>.</p>
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