851 lines
43 KiB
C++
851 lines
43 KiB
C++
/***************************************************************************
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PMusr.h
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Author: Andreas Suter
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e-mail: andreas.suter@psi.ch
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***************************************************************************/
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/***************************************************************************
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* Copyright (C) 2007-2016 by Andreas Suter *
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* andreas.suter@psi.ch *
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* *
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* This program is free software; you can redistribute it and/or modify *
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* it under the terms of the GNU General Public License as published by *
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* the Free Software Foundation; either version 2 of the License, or *
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* (at your option) any later version. *
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* *
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* This program is distributed in the hope that it will be useful, *
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* but WITHOUT ANY WARRANTY; without even the implied warranty of *
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
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* GNU General Public License for more details. *
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* *
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* You should have received a copy of the GNU General Public License *
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* along with this program; if not, write to the *
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* Free Software Foundation, Inc., *
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* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
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***************************************************************************/
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#ifndef _PMUSR_H_
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#define _PMUSR_H_
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#include <vector>
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#include <map>
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using namespace std;
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#include <TString.h>
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// the following ifdef is needed for GCC 4.6 or higher, fftw 3.3 or higher and root 5.30.03 or lower
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#ifdef __CINT__
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typedef struct { char a[7]; } __float128; // needed since cint doesn't know it
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#endif
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#include "fftw3.h"
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#define PMUSR_SUCCESS 0
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#define PMUSR_WRONG_STARTUP_SYNTAX -1
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#define PMUSR_MSR_FILE_NOT_FOUND -2
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#define PMUSR_MSR_ALLOCATION_ERROR -3
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#define PMUSR_MSR_SYNTAX_ERROR -4
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#define PMUSR_TOKENIZE_ERROR -5
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#define PMUSR_MSR_LOG_FILE_WRITE_ERROR -6
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#define PMUSR_MSR_FILE_WRITE_ERROR -7
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#define PMUSR_DATA_FILE_READ_ERROR -8
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#define PRUN_SINGLE_HISTO 0
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#define PRUN_SINGLE_HISTO_RRF 1
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#define PRUN_ASYMMETRY 2
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#define PRUN_ASYMMETRY_RRF 3
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#define PRUN_MU_MINUS 4
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#define PRUN_NON_MUSR 8
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// muon life time in (us), see PRL99, 032001 (2007)
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#define PMUON_LIFETIME 2.197019
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// muon gyromagnetic ratio, see gamma_mu = 2.0 mu_mu / hbar
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// mu_mu = -4.49044807(15) 1e-26 J/T (see http://physics.nist.gov/cgi-bin/cuu/Results?search_for=muon)
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// hbar = 1.054571726(47) 1e-34 Js (see http://physics.nist.gov/cgi-bin/cuu/Value?hbar|search_for=universal_in!)
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// gamma_muon / (2 pi) = 1.355342e-2 (MHz/G)
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#define GAMMA_BAR_MUON 1.35538817e-2
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// accelerator cycles in (us), needed to determine proper background
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#define ACCEL_PERIOD_PSI 0.01975
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#define ACCEL_PERIOD_TRIUMF 0.04337
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#define ACCEL_PERIOD_RAL 0.0
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// used to filter post pileup correct data histos from root files
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#define POST_PILEUP_HISTO_OFFSET 20
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// defines a value for 'undefined values'
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#define PMUSR_UNDEFINED -9.9e99
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//-------------------------------------------------------------
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// msr block header tags
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#define MSR_TAG_TITLE 0
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#define MSR_TAG_FITPARAMETER 1
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#define MSR_TAG_THEORY 2
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#define MSR_TAG_FUNCTIONS 3
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#define MSR_TAG_GLOBAL 4
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#define MSR_TAG_RUN 5
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#define MSR_TAG_COMMANDS 6
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#define MSR_TAG_FOURIER 7
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#define MSR_TAG_PLOT 8
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#define MSR_TAG_STATISTIC 9
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//-------------------------------------------------------------
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// msr fit type tags
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#define MSR_FITTYPE_SINGLE_HISTO 0
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#define MSR_FITTYPE_SINGLE_HISTO_RRF 1
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#define MSR_FITTYPE_ASYM 2
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#define MSR_FITTYPE_ASYM_RRF 3
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#define MSR_FITTYPE_MU_MINUS 4
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#define MSR_FITTYPE_NON_MUSR 8
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//-------------------------------------------------------------
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// msr plot type tags
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#define MSR_PLOT_SINGLE_HISTO 0
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#define MSR_PLOT_SINGLE_HISTO_RRF 1
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#define MSR_PLOT_ASYM 2
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#define MSR_PLOT_ASYM_RRF 3
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#define MSR_PLOT_MU_MINUS 4
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#define MSR_PLOT_NON_MUSR 8
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//-------------------------------------------------------------
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// map and fun offsets for parameter parsing
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#define MSR_PARAM_MAP_OFFSET 10000
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#define MSR_PARAM_FUN_OFFSET 20000
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//-------------------------------------------------------------
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// fourier related tags
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#define FOURIER_UNIT_NOT_GIVEN 0
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#define FOURIER_UNIT_GAUSS 1
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#define FOURIER_UNIT_TESLA 2
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#define FOURIER_UNIT_FREQ 3
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#define FOURIER_UNIT_CYCLES 4
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#define FOURIER_APOD_NOT_GIVEN 0
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#define FOURIER_APOD_NONE 1
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#define FOURIER_APOD_WEAK 2
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#define FOURIER_APOD_MEDIUM 3
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#define FOURIER_APOD_STRONG 4
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#define FOURIER_PLOT_NOT_GIVEN 0
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#define FOURIER_PLOT_REAL 1
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#define FOURIER_PLOT_IMAG 2
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#define FOURIER_PLOT_REAL_AND_IMAG 3
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#define FOURIER_PLOT_POWER 4
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#define FOURIER_PLOT_PHASE 5
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#define FOURIER_PLOT_PHASE_OPT_REAL 6
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//-------------------------------------------------------------
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// RRF related tags
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#define RRF_UNIT_UNDEF -1
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#define RRF_UNIT_kHz 0
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#define RRF_UNIT_MHz 1
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#define RRF_UNIT_Mcs 2
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#define RRF_UNIT_G 3
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#define RRF_UNIT_T 4
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#define RRF_FREQ_UNDEF 1.0e10
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of a bool vector.
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*/
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typedef vector<Bool_t> PBoolVector;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of an unsigned int vector
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*/
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typedef vector<UInt_t> PUIntVector;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of an int vector
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*/
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typedef vector<Int_t> PIntVector;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of an int pair
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*/
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typedef pair<Int_t, Int_t> PIntPair;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of an int pair vector
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*/
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typedef vector<PIntPair> PIntPairVector;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of a double vector
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*/
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typedef vector<Double_t> PDoubleVector;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of a double pair
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*/
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typedef pair<Double_t, Double_t> PDoublePair;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of a double pair vector
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*/
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typedef vector<PDoublePair> PDoublePairVector;
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//-------------------------------------------------------------
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/**
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* <p>typedef to make to code more readable. Definition of a string vector
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*/
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typedef vector<TString> PStringVector;
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//-------------------------------------------------------------
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/**
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* <p>data handling tag
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*/
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enum EPMusrHandleTag { kEmpty, kFit, kView };
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//-------------------------------------------------------------
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/**
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* <p>Handles the data which will be fitted, i.e. packed, background corrected, ...
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* This are <b>not</b> the raw histogram data of a run. This are the pre-processed data.
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*/
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class PRunData {
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public:
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PRunData();
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virtual ~PRunData();
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virtual Double_t GetDataTimeStart() { return fDataTimeStart; }
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virtual Double_t GetDataTimeStep() { return fDataTimeStep; }
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virtual Double_t GetTheoryTimeStart() { return fTheoryTimeStart; }
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virtual Double_t GetTheoryTimeStep() { return fTheoryTimeStep; }
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virtual const PDoubleVector* GetX() { return &fX; }
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virtual const PDoubleVector* GetValue() { return &fValue; }
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virtual const PDoubleVector* GetError() { return &fError; }
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virtual const PDoubleVector* GetXTheory() { return &fXTheory; }
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virtual const PDoubleVector* GetTheory() { return &fTheory; }
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virtual void SetDataTimeStart(Double_t dval) { fDataTimeStart = dval; }
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virtual void SetDataTimeStep(Double_t dval) { fDataTimeStep = dval; }
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virtual void SetTheoryTimeStart(Double_t dval) { fTheoryTimeStart = dval; }
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virtual void SetTheoryTimeStep(Double_t dval) { fTheoryTimeStep = dval; }
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virtual void AppendXValue(Double_t dval) { fX.push_back(dval); }
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virtual void AppendValue(Double_t dval) { fValue.push_back(dval); }
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virtual void AppendErrorValue(Double_t dval) { fError.push_back(dval); }
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virtual void AppendXTheoryValue(Double_t dval) { fXTheory.push_back(dval); }
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virtual void AppendTheoryValue(Double_t dval) { fTheory.push_back(dval); }
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virtual void SetTheoryValue(UInt_t i, Double_t dval);
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virtual void ReplaceTheory(const PDoubleVector &theo);
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private:
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// data related info
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Double_t fDataTimeStart; ///< start time for the data set
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Double_t fDataTimeStep; ///< time step for the data set, i.e. the time length of a bin
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PDoubleVector fX; ///< x-axis vector. Only used for non-muSR
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PDoubleVector fValue; ///< data vector
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PDoubleVector fError; ///< data error vector
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// theory related info
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Double_t fTheoryTimeStart; ///< start time of the theory
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Double_t fTheoryTimeStep; ///< time step of the theory, i.e. the time length of a bin
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PDoubleVector fXTheory; ///< x-axis vector. Only used for non-muSR
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PDoubleVector fTheory; ///< theory vector
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};
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//-------------------------------------------------------------
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/**
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* <p>Handles Non-Musr raw data.
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*/
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class PNonMusrRawRunData {
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public:
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PNonMusrRawRunData();
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virtual ~PNonMusrRawRunData();
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virtual Bool_t FromAscii() { return fFromAscii; }
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virtual const PStringVector* GetLabels() { return &fLabels; }
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virtual const PStringVector* GetDataTags() { return &fDataTags; }
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virtual const vector<PDoubleVector>* GetData() { return &fData; }
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virtual const vector<PDoubleVector>* GetErrData() { return &fErrData; }
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virtual void SetFromAscii(const Bool_t bval) { fFromAscii = bval; }
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virtual void AppendLabel(const TString str) { fLabels.push_back(str); }
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virtual void SetLabel(const UInt_t idx, const TString str);
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virtual void AppendDataTag(const TString str) { fDataTags.push_back(str); }
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virtual void AppendData(const PDoubleVector &data) { fData.push_back(data); }
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virtual void AppendErrData(const PDoubleVector &data) { fErrData.push_back(data); }
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virtual void AppendSubData(const UInt_t idx, const Double_t dval);
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virtual void AppendSubErrData(const UInt_t idx, const Double_t dval);
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private:
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Bool_t fFromAscii; ///< if true: data file was an ascii input file, otherwise it is a db input file
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PStringVector fLabels; ///< vector of all labels (used for x-, y-axis title in view)
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PStringVector fDataTags; ///< vector of all data tags
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vector<PDoubleVector> fData; ///< vector of all data
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vector<PDoubleVector> fErrData; ///< vector of all data errors
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};
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//-------------------------------------------------------------
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/**
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* <p>Handles a single raw muSR histogram set, without any additional header information.
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*/
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class PRawRunDataSet {
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public:
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PRawRunDataSet();
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virtual ~PRawRunDataSet() { fData.clear(); }
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virtual TString GetName() { return fName; }
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virtual Int_t GetHistoNo() { return fHistoNo; }
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virtual Double_t GetTimeZeroBin() { return fTimeZeroBin; }
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virtual Double_t GetTimeZeroBinEstimated() { return fTimeZeroBinEstimated; }
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virtual Int_t GetFirstGoodBin() { return fFirstGoodBin; }
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virtual Int_t GetLastGoodBin() { return fLastGoodBin; }
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virtual Int_t GetFirstBkgBin() { return fFirstBkgBin; }
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virtual Int_t GetLastBkgBin() { return fLastBkgBin; }
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virtual PDoubleVector *GetData() { return &fData; }
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virtual void Clear();
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virtual void SetName(TString str) { fName = str; }
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virtual void SetHistoNo(Int_t no) { fHistoNo = no; }
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virtual void SetTimeZeroBin(Double_t tzb) { fTimeZeroBin = tzb; }
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virtual void SetTimeZeroBinEstimated(Double_t tzb) { fTimeZeroBinEstimated = tzb; }
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virtual void SetFirstGoodBin(Int_t fgb) { fFirstGoodBin = fgb; }
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virtual void SetLastGoodBin(Int_t lgb) { fLastGoodBin = lgb; }
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virtual void SetFirstBkgBin(Int_t fbb) { fFirstBkgBin = fbb; }
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virtual void SetLastBkgBin(Int_t lbb) { fLastGoodBin = lbb; }
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virtual void SetData(PDoubleVector data) { fData = data; }
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private:
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TString fName; ///< keeps the histogram name.
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Int_t fHistoNo; ///< corresponds to the histogram number in the data file
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Double_t fTimeZeroBin; ///< keeps the time zero bin
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Double_t fTimeZeroBinEstimated; ///< keeps the estimated time zero bin
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Int_t fFirstGoodBin; ///< keeps the first good bin of the data set
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Int_t fLastGoodBin; ///< keeps the last good bin of the data set
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Int_t fFirstBkgBin; ///< keeps the first background bin of the data set
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Int_t fLastBkgBin; ///< keeps the last background bin of the data set
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PDoubleVector fData; ///< keeps the histogram data
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};
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//-------------------------------------------------------------
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/**
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* <p>Handles a vector of PRawRunDataSet's. Addressing of the data set can be done
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* via a map mechanism, since e.g. for MusrRoot, the data sets are not continuously
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* numbered due to Red/Green options.
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*/
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class PRawRunDataVector {
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public:
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PRawRunDataVector() {}
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virtual ~PRawRunDataVector() { fDataVec.clear(); }
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virtual UInt_t Size() { return fDataVec.size(); }
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virtual Bool_t IsPresent(UInt_t histoNo);
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virtual PRawRunDataSet* GetSet(UInt_t idx);
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virtual PRawRunDataSet* Get(UInt_t histoNo);
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virtual PRawRunDataSet* operator[](UInt_t histoNo);
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virtual PDoubleVector* GetData(UInt_t histoNo);
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virtual Double_t GetT0Bin(UInt_t histoNo);
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virtual Double_t GetT0BinEstimated(UInt_t histoNo);
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virtual PIntPair GetBkgBin(UInt_t histoNo);
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virtual PIntPair GetGoodDataBin(UInt_t histoNo);
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virtual void Set(PRawRunDataSet dataSet, Int_t idx=-1);
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private:
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vector<PRawRunDataSet> fDataVec;
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};
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//-------------------------------------------------------------
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/**
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* <p>Handles raw data, both non-muSR data as well muSR histogram data.
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*/
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class PRawRunData {
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public:
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PRawRunData();
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virtual ~PRawRunData();
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virtual const TString* GetVersion() { return &fVersion; }
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virtual const TString* GetGenericValidatorUrl() { return &fGenericValidatorURL; }
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virtual const TString* GetSpecificValidatorUrl() { return &fSpecificValidatorURL; }
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virtual const TString* GetGenerator() { return &fGenerator; }
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virtual const TString* GetComment() { return &fComment; }
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virtual const TString* GetFileName() { return &fFileName; }
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virtual const TString* GetLaboratory() { return &fLaboratory; }
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virtual const TString* GetBeamline() { return &fBeamline; }
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virtual const TString* GetInstrument() { return &fInstrument; }
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virtual const TString* GetRunName() { return &fRunName; }
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virtual const TString* GetMuonSource() { return &fMuonSource; }
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virtual const TString* GetMuonSpecies() { return &fMuonSpecies; }
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virtual const Double_t GetMuonBeamMomentum() { return fMuonBeamMomentum; }
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virtual const Double_t GetMuonSpinAngle() { return fMuonSpinAngle; }
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virtual const Int_t GetRunNumber() { return fRunNumber; }
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virtual const TString* GetRunTitle() { return &fRunTitle; }
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virtual const TString* GetSetup() { return &fSetup; }
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virtual const TString* GetStartTime() { return &fStartTime; }
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virtual const TString* GetStartDate() { return &fStartDate; }
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virtual const time_t GetStartDateTime() { return fStartDateTimeSec; }
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virtual const TString* GetStopTime() { return &fStopTime; }
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virtual const TString* GetStopDate() { return &fStopDate; }
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virtual const time_t GetStopDateTime() { return fStopDateTimeSec; }
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virtual const TString* GetCryoName() { return &fCryo; }
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virtual const TString* GetSample() { return &fSample; }
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virtual const TString* GetOrientation() { return &fOrientation; }
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virtual const TString* GetMagnetName() { return &fMagnet; }
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virtual const Double_t GetField() { return fField; }
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virtual const UInt_t GetNoOfTemperatures() { return fTemp.size(); }
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virtual const PDoublePairVector* GetTemperature() const { return &fTemp; }
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virtual const Double_t GetTemperature(const UInt_t idx);
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virtual const Double_t GetTempError(const UInt_t idx);
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virtual const Double_t GetEnergy() { return fEnergy; }
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virtual const Double_t GetTransport() { return fTransport; }
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virtual const PDoubleVector GetRingAnode() { return fRingAnode; }
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virtual const Double_t GetRingAnode(const UInt_t idx);
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virtual const Double_t GetTimeResolution() { return fTimeResolution; }
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virtual const Bool_t IsPresent(UInt_t histoNo) { return fData.IsPresent(histoNo); }
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virtual const Double_t GetT0Bin(const UInt_t histoNo) { return fData.GetT0Bin(histoNo); }
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virtual const Double_t GetT0BinEstimated(const UInt_t histoNo) { return fData.GetT0BinEstimated(histoNo); }
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virtual const PIntPair GetBkgBin(const UInt_t histoNo) { return fData.GetBkgBin(histoNo); }
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virtual const PIntPair GetGoodDataBin(const UInt_t histoNo) { return fData.GetGoodDataBin(histoNo); }
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virtual const PIntVector GetRedGreenOffset() { return fRedGreenOffset; }
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virtual const UInt_t GetNoOfHistos() { return fData.Size(); }
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virtual PRawRunDataSet* GetDataSet(const UInt_t idx, Bool_t wantHistoNo = true);
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virtual const PDoubleVector* GetDataBin(const UInt_t histoNo) { return fData.GetData(histoNo); }
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virtual const PNonMusrRawRunData* GetDataNonMusr() { return &fDataNonMusr; }
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virtual void SetVersion(const TString &str) { fVersion = str; }
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virtual void SetGenericValidatorUrl(const TString &str) { fGenericValidatorURL = str; }
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virtual void SetSpecificValidatorUrl(const TString &str) { fSpecificValidatorURL = str; }
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virtual void SetGenerator(const TString &str) { fGenerator = str; }
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virtual void SetComment(const TString &str) { fComment = str; }
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virtual void SetFileName(const TString &str) { fFileName = str; }
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virtual void SetLaboratory(const TString &str) { fLaboratory = str; }
|
|
virtual void SetBeamline(const TString &str) { fBeamline = str; }
|
|
virtual void SetInstrument(const TString &str) { fInstrument = str; }
|
|
virtual void SetMuonSource(const TString &str) { fMuonSource = str; }
|
|
virtual void SetMuonSpecies(const TString &str) { fMuonSpecies = str; }
|
|
virtual void SetMuonBeamMomentum(const Double_t dval) { fMuonBeamMomentum = dval; }
|
|
virtual void SetMuonSpinAngle(const Double_t dval) { fMuonSpinAngle = dval; }
|
|
virtual void SetRunName(const TString &str) { fRunName = str; }
|
|
virtual void SetRunNumber(const Int_t &val) { fRunNumber = val; }
|
|
virtual void SetRunTitle(const TString str) { fRunTitle = str; }
|
|
virtual void SetSetup(const TString str) { fSetup = str; }
|
|
virtual void SetStartTime(const TString str) { fStartTime = str; }
|
|
virtual void SetStartDate(const TString str) { fStartDate = str; }
|
|
virtual void SetStartDateTime(const time_t val) { fStartDateTimeSec = val; }
|
|
virtual void SetStopTime(const TString str) { fStopTime = str; }
|
|
virtual void SetStopDate(const TString str) { fStopDate = str; }
|
|
virtual void SetStopDateTime(const time_t val) { fStopDateTimeSec = val; }
|
|
virtual void SetMagnetName(const TString str) { fMagnet = str; }
|
|
virtual void SetField(const Double_t dval) { fField = dval; }
|
|
virtual void SetCryoName(const TString str) { fCryo = str; }
|
|
virtual void SetSample(const TString str) { fSample = str; }
|
|
virtual void SetOrientation(const TString str) { fOrientation = str; }
|
|
virtual void ClearTemperature() { fTemp.clear(); }
|
|
virtual void SetTemperature(const UInt_t idx, const Double_t temp, const Double_t errTemp);
|
|
virtual void SetTempError(const UInt_t idx, const Double_t errTemp);
|
|
virtual void SetEnergy(const Double_t dval) { fEnergy = dval; }
|
|
virtual void SetTransport(const Double_t dval) { fTransport = dval; }
|
|
virtual void SetRingAnode(const UInt_t idx, const Double_t dval);
|
|
virtual void SetTimeResolution(const Double_t dval) { fTimeResolution = dval; }
|
|
virtual void SetRedGreenOffset(PIntVector &ivec) { fRedGreenOffset = ivec; }
|
|
virtual void SetDataSet(PRawRunDataSet &dataSet, UInt_t idx=-1) { fData.Set(dataSet, idx); }
|
|
|
|
PNonMusrRawRunData fDataNonMusr; ///< keeps all ascii- or db-file info in case of nonMusr fit
|
|
|
|
private:
|
|
TString fVersion; ///< keeps the version information of the data file
|
|
TString fGenericValidatorURL; ///< keeps the generic validator MusrRoot URL
|
|
TString fSpecificValidatorURL; ///< keeps the instrument specific validator MusrRoot URL
|
|
TString fGenerator; ///< keeps the data file generator name
|
|
TString fComment; ///< keeps the data file comment
|
|
TString fFileName; ///< keeps the name of the original data file
|
|
TString fLaboratory; ///< keeps the name of the laboratory, e.g. PSI, ISIS, TRIUMF, JPARC
|
|
TString fBeamline; ///< keeps the name of the be beamline, e.g. muE4, piM3.1, ...
|
|
TString fInstrument; ///< keeps the name of the instrument, e.g. LEM, GPS, MUSR, EMU, ...
|
|
TString fMuonSource; ///< keeps the type of muon source, e.g. continous surface beam, pulsed beam, low energy muon beam
|
|
TString fMuonSpecies; ///< positive muon or negative muon
|
|
Double_t fMuonBeamMomentum; ///< given in MeV/c, for LEM this is the momentum of the secondary beamline and NOT the momentum of the low energy beam
|
|
Double_t fMuonSpinAngle; ///< gives the muon spin angle in degrees (reference frame depends on the instrument)
|
|
TString fRunName; ///< name of the run as found in the msr-file
|
|
Int_t fRunNumber; ///< run number
|
|
TString fRunTitle; ///< run title
|
|
TString fSetup; ///< description of the setup of this run
|
|
TString fStartTime; ///< start time of the run
|
|
TString fStartDate; ///< start date of the run
|
|
time_t fStartDateTimeSec; ///< start run given as time_t object
|
|
TString fStopTime; ///< stop time of the run
|
|
TString fStopDate; ///< stop date of the run
|
|
time_t fStopDateTimeSec; ///< stop run given as time_t object
|
|
TString fCryo; ///< name of the cryo
|
|
TString fSample; ///< description of the sample
|
|
TString fOrientation; ///< description of the orientation
|
|
TString fMagnet; ///< name of the sample magnet
|
|
Double_t fField; ///< magnetic field value in (G)
|
|
PDoublePairVector fTemp; ///< measured temperatures and standard deviations during the run
|
|
Double_t fEnergy; ///< implantation energy of the muon
|
|
Double_t fTransport; ///< LEM transport settings (Moderator HV)
|
|
PDoubleVector fRingAnode; ///< LEM ring anode HVs (L,R[,T,B])
|
|
Double_t fTimeResolution; ///< time resolution of the run in (ns)
|
|
PIntVector fRedGreenOffset; ///< keeps the Red/Green offsets
|
|
|
|
PRawRunDataVector fData; ///< keeps the histos together with the histo related properties such as T0, first good bin, etc.
|
|
};
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>typedef to make to code more readable. A vector of a raw musr run.
|
|
*/
|
|
typedef vector<PRawRunData> PRawRunDataList;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Helper structure for parsing. Keeps a msr-file line string and the corresponding line number.
|
|
*/
|
|
typedef struct {
|
|
Int_t fLineNo; ///< original line number of the msr-file
|
|
TString fLine; ///< msr-file line
|
|
} PMsrLineStructure;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>typedef to make to code more readable: list of msr-file lines.
|
|
*/
|
|
typedef vector<PMsrLineStructure> PMsrLines;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Handles the information of a parameter.
|
|
*/
|
|
typedef struct {
|
|
Int_t fNoOfParams; ///< how many parameters are given
|
|
Int_t fNo; ///< parameter number
|
|
TString fName; ///< name
|
|
Double_t fValue; ///< value
|
|
Double_t fStep; ///< step / error / neg_error, depending on the situation
|
|
Bool_t fPosErrorPresent; ///< positive error is defined (as a number)
|
|
Double_t fPosError; ///< positive error if present
|
|
Bool_t fLowerBoundaryPresent; ///< flag showing if a lower boundary is present
|
|
Double_t fLowerBoundary; ///< lower boundary for the fit parameter
|
|
Bool_t fUpperBoundaryPresent; ///< flag showing if an upper boundary is present
|
|
Double_t fUpperBoundary; ///< upper boundary for the fit parameter
|
|
Bool_t fIsGlobal; ///< flag showing if the parameter is a global one (used for msr2data global)
|
|
} PMsrParamStructure;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>typedef to make to code more readable: vector of fit parameters.
|
|
*/
|
|
typedef vector<PMsrParamStructure> PMsrParamList;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Handles the information of the GLOBAL section
|
|
*/
|
|
class PMsrGlobalBlock {
|
|
public:
|
|
PMsrGlobalBlock();
|
|
virtual ~PMsrGlobalBlock() {}
|
|
|
|
virtual Bool_t IsPresent() { return fGlobalPresent; }
|
|
virtual Double_t GetRRFFreq(const char *unit);
|
|
virtual TString GetRRFUnit();
|
|
virtual Int_t GetRRFUnitTag() { return fRRFUnitTag; }
|
|
virtual Double_t GetRRFPhase() { return fRRFPhase; }
|
|
virtual Int_t GetRRFPacking() { return fRRFPacking; }
|
|
virtual Int_t GetFitType() { return fFitType; }
|
|
virtual Int_t GetDataRange(UInt_t idx);
|
|
virtual UInt_t GetT0BinSize() { return fT0.size(); }
|
|
virtual Double_t GetT0Bin(UInt_t idx=0);
|
|
virtual UInt_t GetAddT0BinEntries() { return fAddT0.size(); }
|
|
virtual Int_t GetAddT0BinSize(UInt_t addRunIdx);
|
|
virtual Double_t GetAddT0Bin(UInt_t addRunIdx, UInt_t histoIdx);
|
|
virtual Bool_t IsFitRangeInBin() { return fFitRangeInBins; }
|
|
virtual Double_t GetFitRange(UInt_t idx);
|
|
virtual Int_t GetFitRangeOffset(UInt_t idx);
|
|
virtual Int_t GetPacking() { return fPacking; }
|
|
|
|
virtual void SetGlobalPresent(Bool_t bval) { fGlobalPresent = bval; }
|
|
virtual void SetRRFFreq(Double_t freq, const char *unit);
|
|
virtual void SetRRFPhase(Double_t phase) { fRRFPhase = phase; }
|
|
virtual void SetRRFPacking(Int_t pack);
|
|
virtual void SetFitType(Int_t ival) { fFitType = ival; }
|
|
virtual void SetDataRange(Int_t ival, Int_t idx);
|
|
virtual void SetT0Bin(Double_t dval, Int_t idx=-1);
|
|
virtual void SetAddT0Bin(Double_t dval, UInt_t addRunIdx, UInt_t histoNoIdx);
|
|
virtual void SetFitRangeInBins(Bool_t bval) { fFitRangeInBins = bval; }
|
|
virtual void SetFitRange(Double_t dval, UInt_t idx);
|
|
virtual void SetFitRangeOffset(Int_t ival, UInt_t idx);
|
|
virtual void SetPacking(Int_t ival) { fPacking = ival; }
|
|
|
|
private:
|
|
Bool_t fGlobalPresent; ///< flag showing if a GLOBAL block is present at all.
|
|
Double_t fRRFFreq; ///< RRF frequency given in units of (MHz, Mc, T)
|
|
Int_t fRRFUnitTag; ///< RRF unit tag
|
|
Double_t fRRFPhase; ///< RRF phase in (°)
|
|
Int_t fRRFPacking; ///< RRF packing
|
|
Int_t fFitType; ///< fit type: 0=single histo fit, 1=single histo RRF fit, 2=asymmetry fit, 4=mu^- single histo fit, 8=non muSR fit
|
|
Int_t fDataRange[4]; ///< data bin range (fit type 0, 1, 2, 4)
|
|
PDoubleVector fT0; ///< t0 bins (fit type 0, 1, 2, 4). if fit type 0 -> f0, f1, f2, ...; if fit type 2, 4 -> f0, b0, f1, b1, ...
|
|
vector<PDoubleVector> fAddT0; ///< addt0 bins (fit type 0, 1, 2, 4). if fit type 0 -> f0, f1, f2, ...; if fit type 2, 4 -> f0, b0, f1, b1, ...
|
|
Bool_t fFitRangeInBins; ///< flag telling if fit range is given in time or in bins
|
|
Double_t fFitRange[2]; ///< fit range in (us)
|
|
Int_t fFitRangeOffset[2]; ///< if fit range is given in bins it can have the form fit fgb+n0 lgb-n1. This variable holds the n0 and n1.
|
|
Int_t fPacking; ///< packing/rebinning
|
|
};
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Handles the information of a single run block
|
|
*
|
|
*/
|
|
class PMsrRunBlock {
|
|
public:
|
|
PMsrRunBlock();
|
|
virtual ~PMsrRunBlock();
|
|
virtual void CleanUp();
|
|
|
|
virtual UInt_t GetRunNameSize() { return fRunName.size(); }
|
|
virtual TString *GetRunName(UInt_t idx=0);
|
|
virtual UInt_t GetBeamlineSize() { return fBeamline.size(); }
|
|
virtual TString *GetBeamline(UInt_t idx=0);
|
|
virtual UInt_t GetInstituteSize() { return fInstitute.size(); }
|
|
virtual TString *GetInstitute(UInt_t idx=0);
|
|
virtual UInt_t GetFileFormatSize() { return fFileFormat.size(); }
|
|
virtual TString *GetFileFormat(UInt_t idx=0);
|
|
virtual Int_t GetFitType() { return fFitType; }
|
|
virtual Int_t GetAlphaParamNo() { return fAlphaParamNo; }
|
|
virtual Int_t GetBetaParamNo() { return fBetaParamNo; }
|
|
virtual Int_t GetNormParamNo() { return fNormParamNo; }
|
|
virtual Int_t GetBkgFitParamNo() { return fBkgFitParamNo; }
|
|
virtual Int_t GetLifetimeParamNo() { return fLifetimeParamNo; }
|
|
virtual Bool_t IsLifetimeCorrected() { return fLifetimeCorrection; }
|
|
virtual PIntVector* GetMap() { return &fMap; }
|
|
virtual Int_t GetMap(UInt_t idx);
|
|
virtual UInt_t GetForwardHistoNoSize() { return fForwardHistoNo.size(); }
|
|
virtual Int_t GetForwardHistoNo(UInt_t idx=0);
|
|
virtual UInt_t GetBackwardHistoNoSize() { return fBackwardHistoNo.size(); }
|
|
virtual Int_t GetBackwardHistoNo(UInt_t idx=0);
|
|
virtual Double_t GetBkgEstimated(UInt_t idx);
|
|
virtual Double_t GetBkgFix(UInt_t idx);
|
|
virtual Int_t GetBkgRange(UInt_t idx);
|
|
virtual Int_t GetDataRange(UInt_t idx);
|
|
virtual UInt_t GetT0BinSize() { return fT0.size(); }
|
|
virtual Double_t GetT0Bin(UInt_t idx=0);
|
|
virtual UInt_t GetAddT0BinEntries() { return fAddT0.size(); }
|
|
virtual Int_t GetAddT0BinSize(UInt_t addRunIdx);
|
|
virtual Double_t GetAddT0Bin(UInt_t addRunIdx, UInt_t histoIdx);
|
|
virtual Bool_t IsFitRangeInBin() { return fFitRangeInBins; }
|
|
virtual Double_t GetFitRange(UInt_t idx);
|
|
virtual Int_t GetFitRangeOffset(UInt_t idx);
|
|
virtual Int_t GetPacking() { return fPacking; }
|
|
virtual Int_t GetXDataIndex() { return fXYDataIndex[0]; }
|
|
virtual Int_t GetYDataIndex() { return fXYDataIndex[1]; }
|
|
virtual TString* GetXDataLabel() { return &fXYDataLabel[0]; }
|
|
virtual TString* GetYDataLabel() { return &fXYDataLabel[1]; }
|
|
virtual map<TString, Int_t> *GetParGlobal() { return &fParGlobal; }
|
|
virtual PIntVector *GetMapGlobal() { return &fMapGlobal; }
|
|
|
|
virtual void SetRunName(TString &str, Int_t idx=-1);
|
|
virtual void SetBeamline(TString &str, Int_t idx=-1);
|
|
virtual void SetInstitute(TString &str, Int_t idx=-1);
|
|
virtual void SetFileFormat(TString &str, Int_t idx=-1);
|
|
virtual void SetFitType(Int_t ival) { fFitType = ival; }
|
|
virtual void SetAlphaParamNo(Int_t ival) { fAlphaParamNo = ival; }
|
|
virtual void SetBetaParamNo(Int_t ival) { fBetaParamNo = ival; }
|
|
virtual void SetNormParamNo(Int_t ival) { fNormParamNo = ival; }
|
|
virtual void SetBkgFitParamNo(Int_t ival) { fBkgFitParamNo = ival; }
|
|
virtual void SetLifetimeParamNo(Int_t ival) { fLifetimeParamNo = ival; }
|
|
virtual void SetLifetimeCorrection(Bool_t bval) { fLifetimeCorrection = bval; }
|
|
virtual void SetMap(Int_t mapVal, Int_t idx=-1);
|
|
virtual void SetForwardHistoNo(Int_t histoNo, Int_t idx=-1);
|
|
virtual void SetBackwardHistoNo(Int_t histoNo, Int_t idx=-1);
|
|
virtual void SetBkgEstimated(Double_t dval, Int_t idx);
|
|
virtual void SetBkgFix(Double_t dval, Int_t idx);
|
|
virtual void SetBkgRange(Int_t ival, Int_t idx);
|
|
virtual void SetDataRange(Int_t ival, Int_t idx);
|
|
virtual void SetT0Bin(Double_t dval, Int_t idx=-1);
|
|
virtual void SetAddT0Bin(Double_t dval, UInt_t addRunIdx, UInt_t histoNoIdx);
|
|
virtual void SetFitRangeInBins(Bool_t bval) { fFitRangeInBins = bval; }
|
|
virtual void SetFitRange(Double_t dval, UInt_t idx);
|
|
virtual void SetFitRangeOffset(Int_t ival, UInt_t idx);
|
|
virtual void SetPacking(Int_t ival) { fPacking = ival; }
|
|
virtual void SetXDataIndex(Int_t ival) { fXYDataIndex[0] = ival; }
|
|
virtual void SetYDataIndex(Int_t ival) { fXYDataIndex[1] = ival; }
|
|
virtual void SetXDataLabel(TString& str) { fXYDataLabel[0] = str; }
|
|
virtual void SetYDataLabel(TString& str) { fXYDataLabel[1] = str; }
|
|
virtual void SetParGlobal(const TString &str, Int_t ival);
|
|
virtual void SetMapGlobal(UInt_t idx, Int_t ival);
|
|
|
|
private:
|
|
PStringVector fRunName; ///< name of the run file
|
|
PStringVector fBeamline; ///< e.g. mue4, mue1, pim3, emu, m15, ... (former: run type)
|
|
PStringVector fInstitute; ///< e.g. psi, ral, triumf (former: run format)
|
|
PStringVector fFileFormat; ///< e.g. root, nexus, psi-bin, mud, ascii, db
|
|
Int_t fFitType; ///< fit type: 0=single histo fit, 2=asymmetry fit, 4=mu^- single histo fit, 8=non muSR fit
|
|
Int_t fAlphaParamNo; ///< alpha parameter number (fit type 2, 4)
|
|
Int_t fBetaParamNo; ///< beta parameter number (fit type 2, 4)
|
|
Int_t fNormParamNo; ///< N0 parameter number (fit type 0)
|
|
Int_t fBkgFitParamNo; ///< background fit parameter number (fit type 0)
|
|
Int_t fLifetimeParamNo; ///< muon lifetime parameter number (fit type 0)
|
|
Bool_t fLifetimeCorrection; ///< lifetime correction flag for viewing (fit type 0)
|
|
PIntVector fMap; ///< map vector needed to switch parameters for different runs within a single theory
|
|
PIntVector fForwardHistoNo; ///< forward histogram number (fit type 0, 2, 4)
|
|
PIntVector fBackwardHistoNo; ///< backward histogram number (fit type 2, 4)
|
|
Double_t fBkgEstimated[2]; ///< keeps estimated background values (if present)
|
|
Double_t fBkgFix[2]; ///< fixed background in (1/ns) (fit type 0, 2, 4)
|
|
Int_t fBkgRange[4]; ///< background bin range (fit type 0, 2, 4)
|
|
Int_t fDataRange[4]; ///< data bin range (fit type 0, 2, 4)
|
|
PDoubleVector fT0; ///< t0 bins (fit type 0, 2, 4). if fit type 0 -> f0, f1, f2, ...; if fit type 2, 4 -> f0, b0, f1, b1, ...
|
|
vector<PDoubleVector> fAddT0; ///< t0 bins for addrun's
|
|
Bool_t fFitRangeInBins; ///< flag telling if fit range is given in time or in bins
|
|
Double_t fFitRange[2]; ///< fit range in (us)
|
|
Int_t fFitRangeOffset[2]; ///< if fit range is given in bins it can have the form fit fgb+n0 lgb-n1. This variable holds the n0 and n1.
|
|
Int_t fPacking; ///< packing/rebinning
|
|
Int_t fXYDataIndex[2]; ///< used to get the data indices when using db-files (fit type 8)
|
|
TString fXYDataLabel[2]; ///< used to get the indices via labels when using db-files (fit type 8)
|
|
|
|
// Two members used for msr2data in the global mode: fParGlobal and fMapGlobal
|
|
// These are intended to track global and run specific parameters used in the RUN blocks
|
|
// Suggested keys for the std::map: (alpha, beta, norm, bkgfit, lifetime)
|
|
// Suggested values for the std::map: 1 -> parameter is global
|
|
// 0 -> parameter is run specific
|
|
// -1 -> tag not present in the RUN block
|
|
// The information about global parameters in the map line is stored in an std::vector which should have the same length as the map-vector
|
|
// The values in this std::vector can be the same as for the std::map of the other parameters.
|
|
map<TString, Int_t> fParGlobal; ///< here is stored if the parameters used in the RUN block are global or not
|
|
PIntVector fMapGlobal; ///< here is stored if the maps used in the RUN block are global or not
|
|
};
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>typedef to make to code more readable: list of runs with its parameters.
|
|
*/
|
|
typedef vector<PMsrRunBlock> PMsrRunList;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Holds the information of the Fourier block
|
|
*/
|
|
typedef struct {
|
|
Bool_t fFourierBlockPresent; ///< flag indicating if a Fourier block is present in the msr-file
|
|
Int_t fUnits; ///< flag used to indicate the units. 1=field units (G); 2=field units (T); 3=frequency units (MHz); 4=Mc/s
|
|
Bool_t fDCCorrected; ///< if set true, the dc offset of the signal/theory will be removed before the FFT is made.
|
|
Int_t fFourierPower; ///< i.e. zero padding up to 2^fFourierPower, default = 0 which means NO zero padding
|
|
Int_t fApodization; ///< tag indicating the kind of apodization wished, 0=no appodization (default), 1=weak, 2=medium, 3=strong (for details see the docu)
|
|
Int_t fPlotTag; ///< tag used for initial plot. 0=real, 1=imaginary, 2=real & imaginary (default), 3=power, 4=phase
|
|
Int_t fPhaseParamNo; ///< parameter number if used instead of a phase value
|
|
Double_t fPhase; ///< phase
|
|
Double_t fRangeForPhaseCorrection[2]; ///< field/frequency range for automatic phase correction
|
|
Double_t fPlotRange[2]; ///< field/frequency plot range
|
|
Double_t fPhaseIncrement; ///< phase increment for manual phase optimization
|
|
} PMsrFourierStructure;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Holds the information of a single plot block
|
|
*/
|
|
typedef struct {
|
|
Int_t fPlotType; ///< plot type
|
|
Bool_t fLifeTimeCorrection; ///< needed for single histo. If yes, only the asymmetry is shown, otherweise the positron spectrum
|
|
Bool_t fUseFitRanges; ///< yes -> use the fit ranges to plot the data, no (default) -> use range information if present
|
|
Bool_t fLogX; ///< yes -> x-axis in log-scale, no (default) -> x-axis in lin-scale
|
|
Bool_t fLogY; ///< yes -> y-axis in log-scale, no (default) -> y-axis in lin-scale
|
|
Int_t fViewPacking; ///< -1 -> use the run packing to generate the view, otherwise is fViewPacking for the binning of ALL runs.
|
|
PIntVector fRuns; ///< list of runs to be plotted
|
|
PDoubleVector fTmin; ///< time minimum
|
|
PDoubleVector fTmax; ///< time maximum
|
|
PDoubleVector fYmin; ///< asymmetry/counts minimum
|
|
PDoubleVector fYmax; ///< asymmetry/counts maximum
|
|
UInt_t fRRFPacking; ///< rotating reference frame (RRF) packing
|
|
Double_t fRRFFreq; ///< RRF frequency
|
|
UInt_t fRRFUnit; ///< RRF frequency unit. 0=kHz, 1=MHz, 2=Mc/s, 3=Gauss, 4=Tesla
|
|
Int_t fRRFPhaseParamNo; ///< parameter number if used instead of a RRF phase value
|
|
Double_t fRRFPhase; ///< RRF phase
|
|
} PMsrPlotStructure;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>typedef to make to code more readable: list of plots.
|
|
*/
|
|
typedef vector<PMsrPlotStructure> PMsrPlotList;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Holds the informations for the statistics block.
|
|
*/
|
|
typedef struct {
|
|
Bool_t fValid; ///< flag showing if the statistics block is valid, i.e. a fit took place which converged
|
|
PMsrLines fStatLines; ///< statistics block in msr-file clear text
|
|
TString fDate; ///< string holding fitting date and time
|
|
Bool_t fChisq; ///< flag telling if min = chi2 or min = max.likelihood
|
|
Double_t fMin; ///< chisq or max. likelihood
|
|
PDoubleVector fMinPerHisto; ///< chisq or max. likelihood per histo
|
|
UInt_t fNdf; ///< number of degrees of freedom
|
|
Double_t fMinExpected; ///< expected total chi2 or max. likelihood
|
|
PDoubleVector fMinExpectedPerHisto; ///< expected pre histo chi2 or max. likelihood
|
|
PUIntVector fNdfPerHisto; ///< number of degrees of freedom per histo
|
|
} PMsrStatisticStructure;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Holds the informations for the any2many converter program
|
|
*/
|
|
typedef struct {
|
|
Bool_t useStandardOutput; ///< flag showing if the converted shall be sent to the standard output
|
|
TString inFormat; ///< holds the information about the input data file format
|
|
TString outFormat; ///< holds the information about the output data file format
|
|
TString inTemplate; ///< holds the input file template
|
|
TString outTemplate; ///< holds the output file template
|
|
TString year; ///< holds the information about the year to be used
|
|
PIntVector runList; ///< holds the run number list to be converted
|
|
PIntVector groupHistoList; ///< holds the histo group list offset (used to define for MusrRoot files, what to be exported)
|
|
PStringVector inFileName; ///< holds the file name of the input data file
|
|
TString outFileName; ///< holds the output file name
|
|
PStringVector outPathFileName; ///< holds the out path/file name
|
|
TString outPath; ///< holds the output path
|
|
UInt_t rebin; ///< holds the number of bins to be packed
|
|
UInt_t compressionTag; ///< 0=no compression, 1=gzip compression, 2=bzip2 compression
|
|
TString compressFileName; ///< holds the name of the outputfile name in case of compression is used
|
|
UInt_t idf; ///< IDF version for NeXus files.
|
|
} PAny2ManyInfo;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Holds information given at startup
|
|
*/
|
|
typedef struct {
|
|
Bool_t writeExpectedChisq; ///< if set to true, expected chisq and chisq per block will be written
|
|
Bool_t estimateN0; ///< if set to true, for single histogram fits N0 will be estimated
|
|
} PStartupOptions;
|
|
|
|
//-------------------------------------------------------------
|
|
/**
|
|
* <p>Helper class which parses list of numbers of the following 3 forms and its combination.
|
|
* (i) list of integers separted by spaces, e.g. 1 3 7 14
|
|
* (ii) a range of integers of the form nS-nE, e.g. 13-27 which will generate 13, 14, 15, .., 26, 27
|
|
* (iii) a sequence of integers of the form nS:nE:nStep, e.g. 10:20:2 which will generate 10, 12, 14, .., 18, 20
|
|
*/
|
|
class PStringNumberList {
|
|
public:
|
|
PStringNumberList(char *str) { fString = str; }
|
|
PStringNumberList(string str) { fString = str; }
|
|
virtual ~PStringNumberList() { fList.clear(); }
|
|
|
|
virtual bool Parse(string &errorMsg, bool ignoreFirstToken=false);
|
|
virtual PUIntVector GetList() { return fList; }
|
|
|
|
private:
|
|
string fString;
|
|
bool fIsValid;
|
|
PUIntVector fList;
|
|
|
|
virtual bool IsNumber(string &str) { return (str.find_first_not_of("0123456789") == string::npos); }
|
|
virtual void StripSpaces();
|
|
};
|
|
|
|
#endif // _PMUSR_H_
|