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<h1 id="A_61_61musredit_47_40musrgui_41_61_61"> <code><b>musredit / (musrgui)</b></code> </h1>
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<p></p>
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<div class="foswikiToc" id="foswikiTOC"> <ul>
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<li> <a href="MusrGui.html#A_61_61musredit_47_40musrgui_41_61_61"> musredit / (musrgui) </a>
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</li> <li> <a href="MusrGui.html#A_1_Introduction"> 1 Introduction </a>
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</li> <li> <a href="MusrGui.html#A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"> 2 Available Executables, Configuration Files and their Basic Usage </a> <ul>
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<li> <a href="MusrGui.html#A_2.1_musredit_47_40musrgui_41"> 2.1 musredit / (musrgui) </a>
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</li> <li> <a href="MusrGui.html#A_2.2_musredit_startup.xml_47_musrgui_startup.xml"> 2.2 musredit_startup.xml / musrgui_startup.xml </a>
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</li></ul>
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</li> <li> <a href="MusrGui.html#A_3_61_61musrfit_61_61_Features"> 3 musrfit Features </a>
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</li> <li> <a href="MusrGui.html#A_4_musrWiz"> 4 musrWiz </a> <ul>
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<li> <a href="MusrGui.html#A_4.1_musrWiz_45_Introduction"> 4.1 musrWiz - Introduction </a>
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</li> <li> <a href="MusrGui.html#A_4.2_musrWiz_45_Theory"> 4.2 musrWiz - Theory </a>
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</li> <li> <a href="MusrGui.html#A_4.3_musrWiz_45_Functions"> 4.3 musrWiz - Functions </a>
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</li> <li> <a href="MusrGui.html#A_4.4_musrWiz_45_Maps"> 4.4 musrWiz - Maps </a>
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</li> <li> <a href="MusrGui.html#A_4.5_musrWiz_45_Fit_Parameters"> 4.5 musrWiz - Fit Parameters </a>
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</li> <li> <a href="MusrGui.html#A_4.6_musrWiz_45_Fit_Info"> 4.6 musrWiz - Fit Info </a>
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</li> <li> <a href="MusrGui.html#A_4.7_musrWiz_45_Create"> 4.7 musrWiz - Create </a>
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</li></ul>
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</li> <li> <a href="MusrGui.html#A_5_musrStep"> 5 musrStep </a>
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</li> <li> <a href="MusrGui.html#A_6_Bugtracking"> 6 Bugtracking </a>
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</li></ul>
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</div>
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<p></p>
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<h1 id="A_1_Introduction"> 1 Introduction </h1>
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<code>musredit</code> and <code>musrgui</code> are editors which also provide a graphical user interface to the programs contained in the <code><a href="MusrFit.html">musrfit</a></code> suite and are intended to help the user handle <code>musrfit</code> msr files. They are implemented in <code>C++</code> and use the <a href="http://qt.nokia.com/">Qt</a> framework. Principally, <code>musrgui</code> and <code>musredit</code> are doing the same, but are based on different Qt versions. <code>musrgui</code> is based on Qt 3.x and will only be maintained on bug-fixing level since the Qt 3.x licensing is less straight forward than the Qt 4.x one. <code>musredit</code> is based on Qt 4.6 or Qt 5.6 (or above). The Qt 5.6 version of <code>musredit</code> will be actively developed, whereas the Qt 4.x version will only get bug fixing and eventually will be droped.<br>
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On this documentation page only the features related to <code>musrfit</code> are described—the basic editor functions which should be self-explanatory are not.<br>
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<strong><span class='foswikiRedFG'>Before going on using <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read the <a href="MusrFit.html">manual</a> of <code>musrfit</code> first!</span></strong>
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<p></p>
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<h1 id="A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"> 2 Available Executables, Configuration Files and their Basic Usage </h1>
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<span id="MusrEdit"></span>
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<h2 id="A_2.1_musredit_47_40musrgui_41"> 2.1 musredit / (musrgui) </h2>
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<code>musredit</code> / <code>musrgui</code> are the editor executables. If called from within a shell they accept a few optional parameters: <dl>
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<dt> <msr_files> </dt><dd> file names of the msr files that should be opened in separate editor tabs on startup of <code>musrgui</code> / <code>musredit</code>.
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</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
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</dd> <dt> --version </dt><dd> prints the version number of <code>musrgui</code> / <code>musredit</code>
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</dd></dl>
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<p></p>
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If called without any parameters an empty editor window opens.
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<p></p>
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<span id="MusreditStartupXml"></span>
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<h2 id="A_2.2_musredit_startup.xml_47_musrgui_startup.xml"> 2.2 musredit_startup.xml / musrgui_startup.xml </h2>
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<code><b>musredit_startup.xml</b></code> / <code><b>musrgui_startup.xml</b></code> are configuration files located at the <code>musredit</code> / <code>musrgui</code> binary path. It is also possible to have another version of this file in the working directory which then will be used!
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<p></p>
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In this file the following XML tags are allowed to define settings and might proof useful for all users of <code>musredit</code> / <code>musrgui</code>: <dl>
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<dt> <general></general> </dt><dd> set the default paths to executables and files in this environment <dl>
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<dt> <exec_path>PATH_TO_EXEC</exec_path> </dt><dd> set the path <strong>PATH_TO_EXEC</strong> where the executables <code>musrfit</code>, <code>musrview</code>, <code>musrt0</code>, etc. can be found (inside the <general> environment)
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</dd> <dt> <default_save_path>SAV_PATH</default_save_path> </dt><dd> specify the path <strong>SAV_PATH</strong> where <code>musrgui</code> / <code>musredit</code> point by default when opening and saving msr files (inside the <general> environment). Default is the current directory.
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</dd> <dt> <msr_default_file_path>MSR_DEF_PATH</msr_default_file_path> </dt><dd> set the path <strong>MSR_DEF_PATH</strong> where the <a class="foswikiCurrentTopicLink" href="#MusrfitFeatures">default msr files provided by</a> <code>musrgui</code> are stored (inside the <general> environment)
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</dd> <dt> <timeout>3600</timeout> </dt><dd> timeout in seconds after which musrview canvas will automatically quit. A value of 0 or a negative number will keep the musrview canvas open without self-determination.
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</dd> <dt> <keep_minuit2_output>y/n</keep_minuit2_output> </dt><dd> flag indicating if the <code>MINUIT2</code> output shall be kept per msr-file ('y') or only for the current msr-file ('n').
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</dd> <dt> <dump_ascii>y/n</dump_ascii> </dt><dd> flag indicating if musrfit shall dump fit data into ascii format. See help of musrfit.
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</dd> <dt> <dump_root>y/n</dump_root> </dt><dd> flag indicating if musrfit shall dump fit data into root format. See help of musrfit.
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</dd> <dt> <title_from_data_file>y/n</title_from_data_file> </dt><dd> specify if <code>musrfit</code> should be called with the <a href="MusrFit.html#MusrFit">-t option</a> by default (inside the <general> environment)
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</dd> <dt> <chisq_pre_run_block>y/n</chisq_pre_run_block> </dt><dd> flag indicating if per-run chisq shall be written into the msr-output-file. $ <estimate_n0>y/n</estimate_n0> flag indicating if for a single histogram fit N0 shall be estimated before the fit procedure starts.
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</dd> <dt> <musrview_show_fourier>y/n</musrview_show_fourier> </dt><dd> flag indicating if musrview will directly present the Fourier transform rather than the time domain data.
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</dd> <dt> <musrview_show_avg>y/n</musrview_show_avg> </dt><dd> flag indicating if musrview will directly present averaged data, typically used for Fourier power spectra.
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</dd> <dt> <enable_musrt0>y/n</enable_musrt0> </dt><dd> specify if <code><a href="MusrFit.html#MusrT0">musrt0</a></code> can be called from within <code>musrgui</code> / <code>musredit</code> (inside the <general> environment)
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</dd></dl>
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</dd> <dt> <font_settings></font_settings> </dt><dd> set the default font in this environment <dl>
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<dt> <font_name>FONT</font_name> </dt><dd> specify the name of the font <strong>FONT</strong> to be used by default in <code>musrgui</code> / <code>musredit</code> (inside the <font_settings> environment)
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</dd> <dt> <font_size>N</font_size> </dt><dd> specify the size <strong>N</strong> of the font to be used by default in <code>musrgui</code> / <code>musredit</code> (inside the <font_settings> environment)
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</dd></dl>
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</dd> <dt> <msr_file_defaults></msr_file_defaults> </dt><dd> put the default settings for newly created msr files in this environment <dl>
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<dt> <beamline>BL</beamline> </dt><dd> set the name of the muon beamline <strong>BL</strong> here (inside a <msr_file_defaults>-environment)
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</dd> <dt> <institute>INST</institute> </dt><dd> set the name of the facility <strong>INST</strong> where the beamline <strong>BL</strong> is located. Valid settings are <strong>PSI</strong>, <strong>RAL</strong>, <strong>JPARC</strong>, and <strong>TRIUMF</strong> (inside a <msr_file_defaults> environment)
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</dd> <dt> <file_format>FF</file_format> </dt><dd> specify the default data file format <strong>FF</strong> here. Valid formats are <strong>NEXUS</strong>, <strong>ROOT-NPP</strong>, <strong>ROOT-PPC</strong>, <strong>PSI-BIN</strong>, <strong>PSI-MDU</strong>, <strong>MDU-ASCII</strong>, <strong>WKM</strong>, <strong>MUD</strong>, <strong>ASCII</strong>, and <strong>DB</strong> (inside a <msr_file_defaults> environment)
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</dd> <dt> <lifetime_correction>y/n</lifetime_correction> </dt><dd> choose if by default the <strong>lifetimecorrection</strong> <a href="MusrFit.html#LifeTimeCorrection">option</a> should be set (inside a <msr_file_defaults> environment)
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</dd></dl>
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</dd> <dt> <msr2data_defaults></msr2data_defaults> </dt><dd> define the default <a href="Msr2Data.html#OptionalParameters">options</a> for calling <code><a href="Msr2Data.html">msr2data</a></code> in this environment; the options set here are ticked by default in the <a href="Msr2Data.html#MusrGuiInterface">graphical interface</a> of <code>musrgui</code> / <code>musredit</code>. <dl>
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<dt> <chain_fit>y/n</chain_fit> </dt><dd> (un)set the chain fit (<strong>!</strong>) option (inside a <msr2data_defaults> environment)
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</dd> <dt> <write_data_header>y/n</write_data_header> </dt><dd> (un)set the <strong>noheader</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <ignore_data_header_info>y/n</ignore_data_header_info> </dt><dd> (un)set the <strong>nosummary</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <keep_minuit2_output>y/n</keep_minuit2_output> </dt><dd> (un)set the <strong>-k</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <write_column_data>y/n</write_column_data> </dt><dd> (un)set the <strong>data</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <create_msr_file_only>y/n</create_msr_file_only> </dt><dd> (un)set the <strong>msr</strong> option in case a template run is specified (inside a <msr2data_defaults> environment)
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</dd> <dt> <fit_only>y/n</fit_only> </dt><dd> (un)set the <strong>fit</strong> option in case no template run is specified (inside a <msr2data_defaults> environment)
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</dd> <dt> <global>y/n</global> </dt><dd> (un)set the <strong>global</strong> option (inside a <msr2data_defaults> environment)
|
|
</dd> <dt> <global_plus>y/n</global_plus> </dt><dd> (un)set the <strong>global+</strong> option (inside a <msr2data_defaults> environment)
|
|
</dd> <dt> <recreate_data_file>y/n</recreate_data_file> </dt><dd> (un)set the <code>musrgui</code> / <code>musredit</code> option for recreating the output file (inside a <msr2data_defaults> environment)
|
|
</dd> <dt> <open_file_after_fitting>y/n</open_file_after_fitting> </dt><dd> (un)set the <code>musrgui</code> / <code>musredit</code> option for opening msr files after fitting (inside a <msr2data_defaults> environment)
|
|
</dd></dl>
|
|
</dd></dl>
|
|
<p></p>
|
|
Additionally, there are some settings defined in this XML file which should be only changed by experienced users who like to add new features to <code>musrgui</code> / <code>musredit</code>: <dl>
|
|
<dt> <help_section></help_section> </dt><dd> define various help messages in this environment <dl>
|
|
<dt> <help_main>HELP TEXT</help_main> </dt><dd> set the main help message <strong>HELP TEXT</strong> here (inside a <help_section> environment)
|
|
</dd></dl>
|
|
</dd> <dt> <func_pixmap_path>PIX_PATH</func_pixmap_path> </dt><dd> set the path <strong>PIX_PATH</strong> to <img alt="LaTeX_logo.png" src="../pub/MUSR/MusrGui/LaTeX_logo.png" /> pixmaps visualizing the various supported theory functions
|
|
</dd> <dt> <theory_functions></theory_functions> </dt><dd> define the functions for a msr file's THEORY block <a href="MusrFit.html#TheoryTable">according to the correct syntax</a> in this environment <dl>
|
|
<dt> <func></func> </dt><dd> specify a function here (inside a <theory_functions> environment) <dl>
|
|
<dt> <name>NAME</name> </dt><dd> the <strong>NAME</strong> of the function in the msr file (inside a <func> environment)
|
|
</dd> <dt> <comment>COMMENT</comment> </dt><dd> description of the used parameters (inside a <func> environment)
|
|
</dd> <dt> <label>LABEL</label> </dt><dd> <strong>LABEL</strong> of the function in the <code>musrgui</code> / <code>musredit</code> menu (inside a <func> environment)
|
|
</dd> <dt> <pixmap>PIXMAP</pixmap> </dt><dd> <img alt="LaTeX_logo.png" src="../pub/MUSR/MusrGui/LaTeX_logo.png" /> picture used to describe the function and stored in the <strong>PIX_PATH</strong> (inside a <func> environment)
|
|
</dd> <dt> <params>N</params> </dt><dd> number of parameters <strong>N</strong> used by the function (inside a <func> environment)
|
|
</dd></dl>
|
|
</dd></dl>
|
|
</dd></dl>
|
|
<p></p>
|
|
An example of the <code><b>musrgui_startup.xml</b></code> looks like:
|
|
<pre class="html">
|
|
<?xml version="1.0" encoding="UTF-8"?>
|
|
<musrgui_startup xmlns="https://intranet.psi.ch/MUSR/MusrGui">
|
|
<general>
|
|
<exec_path>/usr/local/bin</exec_path>
|
|
<default_save_path>./</default_save_path>
|
|
<msr_default_file_path>/home/user/analysis/musrfit/src/musrgui</msr_default_file_path>
|
|
</general>
|
|
<font_settings>
|
|
<font_name>Courier New</font_name>
|
|
<font_size>10</font_size>
|
|
</font_settings>
|
|
<msr_file_defaults>
|
|
<beamline>mue4</beamline>
|
|
<institute>psi</institute>
|
|
<file_format>root-npp</file_format>
|
|
<lifetime_correction>y</lifetime_correction>
|
|
</msr_file_defaults>
|
|
<msr2data_defaults>
|
|
<chain_fit>y</chain_fit>
|
|
<write_data_header>y</write_data_header>
|
|
<ignore_data_header_info>n</ignore_data_header_info>
|
|
<keep_minuit2_output>n</keep_minuit2_output>
|
|
<write_column_data>n</write_column_data>
|
|
<recreate_data_file>n</recreate_data_file>
|
|
<open_file_after_fitting>y</open_file_after_fitting>
|
|
<create_msr_file_only>n</create_msr_file_only>
|
|
<fit_only>n</fit_only>
|
|
<global>n</global>
|
|
<global_plus>n</global_plus>
|
|
</msr2data_defaults>
|
|
<help_section>
|
|
<help_main>
|
|
For a detailed description of the aim and structure of a msr file see http://lmu.web.psi.ch/facilities/software/musrfit/user/MUSR/MusrFit.html
|
|
</help_main>
|
|
</help_section>
|
|
<func_pixmap_path>/home/user/analysis/musrfit/src/musrgui/latex_images</func_pixmap_path>
|
|
<theory_functions>
|
|
<func>
|
|
<name>asymmetry</name>
|
|
<comment></comment>
|
|
<label>Asymmetry</label>
|
|
<pixmap>asymmetry.png</pixmap>
|
|
<params>1</params>
|
|
</func>
|
|
<func>
|
|
<name>simplExpo</name>
|
|
<comment>(rate)</comment>
|
|
<label>simple Exp</label>
|
|
<pixmap>simpleExp.png</pixmap>
|
|
<params>1</params>
|
|
</func>
|
|
<func>
|
|
<name>simplGss</name>
|
|
<comment>(rate)</comment>
|
|
<label>simple Gauss</label>
|
|
<pixmap>simpleGauss.png</pixmap>
|
|
<params>1</params>
|
|
</func>
|
|
</theory_function>
|
|
</musrgui_startup>
|
|
</pre>
|
|
<p></p>
|
|
<span id="MusrfitFeatures"></span>
|
|
<h1 id="A_3_61_61musrfit_61_61_Features"> 3 <code><b>musrfit</b></code> Features </h1>
|
|
The features of <code>musrfit</code> which can be accessed by the graphical front ends <code>musredit</code> / (<code>musrgui</code>) are described in the following. All functions can either be called by choosing them from the MusrFit menu, by clicking the respective button in the MusrFit bar, or by using a keyboard shortcut.
|
|
<p></p>
|
|
<img alt="musrWiz-32x32.png" src="../pub/MUSR/MusrGui/musrWiz-32x32.png" /> musrWiz is a helper programs which allows to create a msr-file from scratch without too much a priori knowledge. For details see <a class="foswikiCurrentTopicLink" href="#MusrWiz">musrWiz</a>.
|
|
<p></p>
|
|
<img alt="musrchisq-plain.png" src="../pub/MUSR/MusrGui/musrchisq-plain.png" /> Calculate Chisq (Alt+c): <pre class="bash">musrfit <msr_file> --chisq-only</pre> is called for the <strong><msr_file></strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
|
|
<p></p>
|
|
<img alt="musrfit-plain.png" src="../pub/MUSR/MusrGui/musrfit-plain.png" /> Fit (Alt+f): <pre class="bash">musrfit <msr_file> [optional parameters]</pre> is called for the <strong><msr_file></strong> selected in the editor. The optional parameters may be chosen under <a class="foswikiCurrentTopicLink" href="#MusrPrefs">Preferences</a>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
|
|
<p></p>
|
|
<img alt="musrswap-plain.png" src="../pub/MUSR/MusrGui/musrswap-plain.png" /> Swap Msr ↔ Mlog (Alt+s): Swap the msr and mlog files. E.g., for a file called <code><b>8472_zf.msr</b></code>, this is copied to <code><b>8472_zf.mlog</b></code> and vice versa.
|
|
<p></p>
|
|
<img alt="musrStep-32x32.png" src="../pub/MUSR/MusrGui/musrStep-32x32.png" /> musrStep
|
|
<p></p>
|
|
<img alt="msr2data-plain.png" src="../pub/MUSR/MusrGui/msr2data-plain.png" /> Msr2data (Alt+m): Opens a graphical interface to the <code>msr2data</code> program described in detail in its own <a href="Msr2Data.html#MusrGuiInterface">manual</a>.
|
|
<p></p>
|
|
<img alt="musrview-plain.png" src="../pub/MUSR/MusrGui/musrview-plain.png" /> View (Alt+v): <pre class="bash">musrview <msr_file></pre> is called for the <strong><msr_file></strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrView">manual</a> of <code>musrfit</code>.
|
|
<p></p>
|
|
<img alt="musrt0-plain.png" src="../pub/MUSR/MusrGui/musrt0-plain.png" /> T0 (Alt+t): <pre class="bash">musrt0 <msr_file></pre> is called for the <strong><msr_file></strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrT0">manual</a> of <code>musrfit</code>.
|
|
<p></p>
|
|
<img alt="musrFT-plain.png" src="../pub/MUSR/MusrGui/musrFT-plain.png" /> Raw Fourier: <code>musrFT <with-many-options></code> is called. For a proper documentation of it, check the <a href="MusrFit.html#MusrFT">manual</a> of <code>musrFT</code>.
|
|
<p></p>
|
|
<span id="MusrPrefs"></span>
|
|
<img alt="musrprefs-plain.png" src="../pub/MUSR/MusrGui/musrprefs-plain.png" /> Preferences (Alt+p): Opens a window in which the optional parameters that should be passed to <code>musrfit</code> can be chosen. These options are <code><b>--keep-mn2-output</b></code>, <code><b>--dump ascii</b></code>, <code><b>--dump root</b></code>, and <code><b>--title-from-data-file</b></code>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>. Additionally, the access to <code>musrt0</code> can be enabled temporarily.
|
|
<p></p>
|
|
<img alt="musrdump-plain.png" src="../pub/MUSR/MusrGui/musrdump-plain.png" /> Dump Header: Opens a file dialog which allows to select a μSR data file. When this file can be read, the run header info is dumped into a dialog window. Essentially this calls <code><b>dump_header</b></code> internally.
|
|
<p></p>
|
|
<span id="MusrWiz"></span>
|
|
<h1 id="A_4_musrWiz"> 4 musrWiz </h1>
|
|
<p></p>
|
|
musrWiz is a helper program which allows to easily create the necessary msr-file needed as the input for musrfit. musrWiz is still in it's early stage; not all options are already implemented and here and there you will likely find some bugs.
|
|
From musredit it can be accessed via the MusrFit menu or the wand
|
|
<p></p>
|
|
<img alt="musredit-main_0.png" src="../pub/MUSR/MusrGui/musredit-main_0.png" />
|
|
<p></p>
|
|
The musrWiz GUI is organized in a couple of different dialogues which some information needs to be provided by the user. In the following these different dialogues will be discussed briefly.
|
|
<p></p>
|
|
<span id="MusrWizIntroduction"></span>
|
|
<h2 id="A_4.1_musrWiz_45_Introduction"> 4.1 musrWiz - Introduction </h2>
|
|
<p></p>
|
|
The introduction dialogue
|
|
<p></p>
|
|
<img alt="musrWiz-Introduction_0.png" src="../pub/MUSR/MusrGui/musrWiz-Introduction_0.png" />
|
|
<p></p> <ol>
|
|
<li> an explicit msr-file name can be provided here. More often the msr-file name is generated out of the run number.
|
|
</li> <li> year of the run data.
|
|
</li> <li> run number. If no explicit msr-file is provided, the run number together with fit type and type of measurement will be used to generate the msr-file name.
|
|
</li> <li> from the pull down menu the institute (for which a necessary xml-file is provided) has to be choosen.
|
|
</li> <li> from the pull down menu the the instrument can be chosen.
|
|
</li> <li> the fit type has to be chosen. Possible fit types are: <code>Single Histo</code> / <code>Single Histo RRF</code> / <code>Asymmetry</code> / <code>Asymmetry RRF</code> / <code>Mu Minus</code> / <code>None muSR</code>
|
|
</li> <li> type of measurement is essentially needed for the grouping of the detectors. Possible are: <code>ZF</code> for zero field measurements / <code>TF</code> for transverse field measurements / <code>LF</code> for longitudinal field measurements. Depending on the choice and instrument some additional question might be asked, e.g. which magnet has been used.
|
|
</li> <li> T0's: this last menu defines from where to get the t0's. The options are: ' <code>from data file</code> ', i.e. the t0 are assumed to be correctly set in the provided data file ' <code>call musrT0</code> ', i.e. after the msr-file is generated, musrt0 will be called which allows the user to find the proper t0 from the prompt peak ' <code>enter here</code> ' will provide a pop-up menu where the t0 parameter can be given explicitly.
|
|
</li></ol>
|
|
<p></p>
|
|
If all this information have been provided ' <code>Next></code> ' will lead you the the theory dialogue.
|
|
<p></p>
|
|
<span id="MusrWizTheory"></span>
|
|
<h2 id="A_4.2_musrWiz_45_Theory"> 4.2 musrWiz - Theory </h2>
|
|
<p></p>
|
|
The theory dialogue is used to define the fitting function. There are two ways of using it: <ol>
|
|
<li> choose a template theory function. This option has the advantage that the next steps will be very easy because within the template almost everything is already pre-defined. The disadvantage is that you are not free in setting up your theory function as you would like to have.
|
|
</li> <li> freely write your theory function. The advantage here is that you can customize your theory function as you would like to have it. This will come at the cost that you also will need to define maps, functions, etc. yourself. The good thing though is that at the very end you can save this as a template for future re-use.
|
|
</li></ol>
|
|
<p></p>
|
|
First the template path will be described. The theory dialogue looks like this
|
|
<p></p>
|
|
<img alt="musrWiz-Theory-1_0.png" src="../pub/MUSR/MusrGui/musrWiz-Theory-1_0.png" />
|
|
<p></p> <ol>
|
|
<li> This is a text edit field were you can enter the theory fit function as you would like to have it.
|
|
</li> <li> The ' <code>Clear All</code> ' button will clear whatever you entered in the text field above
|
|
</li> <li> This pull-down menu allows to select a theory function which will be added to the text field above by pressing the ' <code>Add</code> ' button. Pre defined theory function starting with a 'T' are templates rather than only theory function strings.
|
|
</li> <li> The ' <code>Add</code> ' button is used to add the chosen theory function / template from the pull-down menu to its left.
|
|
</li> <li> The ' <code>Check</code> ' button is used to make a syntactical check of whatever is written in the text edit field.
|
|
</li></ol>
|
|
<p></p>
|
|
Let's assume you would like to chose a template of an exponentially damped cosine (likely a TF measurement with dilute nuclear damping), do the following: Select ' <code>T: 1 [exp x cos](TF)</code> ' from the pull-down menu and than press the ' <code>Add</code> ' button. You will see that the theory fit function will be entered in the text edit field. After this just press the ' <code>Next></code> ' button which will bring you to <code>Functions</code> dialogue.
|
|
<p></p>
|
|
<span id="MusrWizFunctions"></span>
|
|
<h2 id="A_4.3_musrWiz_45_Functions"> 4.3 musrWiz - Functions </h2>
|
|
<p></p>
|
|
In the <code>Functions</code> dialogue all the necessary functions can be entered. A function operates <strong>only</strong> on fitting parameters. This is different to the theory function which operates on the fitting parameters <strong>and</strong> the time.
|
|
The dialogue looks like this
|
|
<p></p>
|
|
<img alt="musrWiz-Functions-1_0.png" src="../pub/MUSR/MusrGui/musrWiz-Functions-1_0.png" />
|
|
<p></p> <ol>
|
|
<li> a text edit field in which the various needed functions can be entered. In case a template theory is used, the appropriate function should be shown here and <strong>no</strong> editing will be needed here.
|
|
</li> <li> pressing ' <code>Show Theory</code> ' button will pop-up a little window showing the previously entered theory function. This is handy when defining its own theory, i.e. not working with a template.
|
|
</li></ol>
|
|
<p></p>
|
|
<img alt="musrWiz-Functions-2_0.png" src="../pub/MUSR/MusrGui/musrWiz-Functions-2_0.png" />
|
|
<p></p>
|
|
<span id="MusrWizMaps"></span>
|
|
<h2 id="A_4.4_musrWiz_45_Maps"> 4.4 musrWiz - Maps </h2>
|
|
<p></p>
|
|
<img alt="musrWiz-Maps-1_0.png" src="../pub/MUSR/MusrGui/musrWiz-Maps-1_0.png" />
|
|
<p></p>
|
|
The map dialogue will list the maps previously used in the theory and functions blocks/dialogues before. Again, if a template is used, nothing needs to be entered here.
|
|
<p></p> <ol>
|
|
<li> The ' <code>Show Theory</code> ' button allows to show the currently defined theory and the functions.
|
|
</li></ol>
|
|
<p></p>
|
|
<span id="MusrWizFitParameters"></span>
|
|
<h2 id="A_4.5_musrWiz_45_Fit_Parameters"> 4.5 musrWiz - Fit Parameters </h2>
|
|
<p></p>
|
|
<img alt="musrWiz-FitParameters-1_0.png" src="../pub/MUSR/MusrGui/musrWiz-FitParameters-1_0.png" />
|
|
<p></p> <ol>
|
|
<li> The ' <code>Show Theory</code> ' button allows to show the currently defined theory and the functions.
|
|
</li></ol>
|
|
<p></p>
|
|
In the fit parameter dialogue all parameter names can be defined. Furthermore the starting values for the parameters, the step (initial step size for the parameter fit), and any boundaries can be defined here.
|
|
<p></p>
|
|
<span id="MusrWizFitInfo"></span>
|
|
<h2 id="A_4.6_musrWiz_45_Fit_Info"> 4.6 musrWiz - Fit Info </h2>
|
|
<p></p>
|
|
<img alt="musrWiz-FitInfo-1_0.png" src="../pub/MUSR/MusrGui/musrWiz-FitInfo-1_0.png" />
|
|
<p></p> <ol>
|
|
<li> allows to define the time fit range (start time, end time).
|
|
</li> <li> packing defines how many bins of the original data shall be combined (added, also called re-binning).
|
|
</li> <li> In this text field to fitting commands are given (see the <code>MINUIT</code> and <code>musrfit</code> manual for details).
|
|
</li></ol>
|
|
<p></p>
|
|
<span id="MusrWizCreate"></span>
|
|
<h2 id="A_4.7_musrWiz_45_Create"> 4.7 musrWiz - Create </h2>
|
|
<p></p>
|
|
<img alt="musrWiz-Create-1_0.png" src="../pub/MUSR/MusrGui/musrWiz-Create-1_0.png" />
|
|
<p></p> <ol>
|
|
<li> shows the path where the msr-file will be saved. If you would like to save it somewhere else press the ' <code>Save As (msr-file path)</code> button.
|
|
</li> <li> pressing this button will allow you to find the path where to save the msr-file.
|
|
</li> <li> pressing this button will save to current configuration as a template for future re-use.
|
|
</li></ol>
|
|
<p></p>
|
|
<span id="MusrStep"></span>
|
|
<h1 id="A_5_musrStep"> 5 musrStep </h1>
|
|
<p></p>
|
|
musrStep is a little helper program which allows to reset the initial step size. This sometimes comes very handy if working on an instrument with many detectors after a fit slightly went wrong leaving you with a far too small initial step size for further iterations. To edit all the steps individually is tedious and error prone. Here musrStep can help.
|
|
<p></p>
|
|
<img alt="musrStep_0_0.png" src="../pub/MUSR/MusrGui/musrStep_0_0.png" />
|
|
<p></p>
|
|
When invoking musrStep the above dialogue will popup <ol>
|
|
<li> shows the relevant parts of the <code>FITPARAMETER</code> block. The only editable column is <code>step</code>.
|
|
</li> <li> ' <code>Check Specific</code> ' will popup a dialogue where a template string can be entered, e.g. <code>Asym</code>. As a result all fit parameters containing the template string will be selected.
|
|
</li> <li> ' <code>Check All</code> ' will select <em>all</em> fit parameters.
|
|
</li> <li> ' <code>Uncheck All</code> ' will unselect <em>all</em> fir parameters.
|
|
</li> <li> ' <code>Modify Automatic</code> ' will change all the step values automatically. It basically sets all the step sizes to 1% of the corresponding fit parameter value, except the phases where the step will be set to a value of 5 degrees.
|
|
</li> <li> ' <code>Modify Selected</code> ' will start the dialogue shown beneath. Follow the description there.
|
|
</li> <li> ' <code>Save&Quit</code> ' will save the current step values, close the dialogue and reload the modified msr-file.
|
|
</li> <li> ' <code>Cancel</code> ' will cancel the musrStep dialogue without modifying anything.
|
|
</li></ol>
|
|
<p></p>
|
|
<img alt="musrStep_1_0.png" src="../pub/MUSR/MusrGui/musrStep_1_0.png" />
|
|
<p></p>
|
|
When clicking on ' <code>Modify Selected</code> ' the above dialogue will be presented. It allows to manipulate all selected fir parameter step values according to the following rules <ol>
|
|
<li> ' <code>Scale by Factor</code> ' will scale the step value by the factor given in the field (2). If the ' <code>Absolute Value</code> ' check box is selected, rather than scaling the factor value will be used to modify the step value.
|
|
</li> <li> Scaling factor or absolute value to modify the step values of the selected fit parameters.
|
|
</li> <li> checking the ' <code>Absolute Value</code> ' check box will change the meaning from <code>Scale by Factor</code> to <code>Copy Factor Value</code>.
|
|
</li> <li> ' <code>Scale Automatically</code> ' will modify the step values of the selected fit parameters according to the rules described before.
|
|
</li> <li> ' <code>Cancel</code> ' will cancel the dialogue.
|
|
</li></ol>
|
|
<p></p>
|
|
<span id="BugTracking"></span>
|
|
<h1 id="A_6_Bugtracking"> 6 Bugtracking </h1>
|
|
<p></p>
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For reporting bugs or requesting new features and improvements please use the <a href="https://bitbucket.org/muonspin/musrfit/issues">Bitbucket Tracker</a>, <a href="https://tracker.psi.ch/jira/browse/MUSR/">PSI Tracker</a> (PSI account needed) or send an e-mail to A. Suter.</div>
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<table border="1" class="foswikiTable" id="tableMusrGui1" rules="none" summary="Topic attachments"><caption>Topic attachments</caption>
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<th class="foswikiTableCol0 foswikiFirstCol"> <a href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=0;table=1;up=0#sorted_table" rel="nofollow" title="Sort by this column">I</a> </th>
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<th class="foswikiTableCol1"> <a href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=1;table=1;up=0#sorted_table" rel="nofollow" title="Sort by this column">Attachment</a> </th>
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<th class="foswikiTableCol2"> <a href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=2;table=1;up=0#sorted_table" rel="nofollow" title="Sort by this column">Action</a> </th>
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<th class="foswikiTableCol3"> <a href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=3;table=1;up=0#sorted_table" rel="nofollow" title="Sort by this column">Size</a> </th>
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<th class="foswikiTableCol4"> <a href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=4;table=1;up=0#sorted_table" rel="nofollow" title="Sort by this column">Date</a> </th>
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<th class="foswikiTableCol5"> <a href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=5;table=1;up=0#sorted_table" rel="nofollow" title="Sort by this column">Who</a> </th>
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<th class="foswikiTableCol6 foswikiLastCol"> <a href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=6;table=1;up=0#sorted_table" rel="nofollow" title="Sort by this column">Comment</a> </th>
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<td class="foswikiTableCol0 foswikiFirstCol foswikiLast"> <span class='foswikiIcon'><img src='../pub/System/DocumentGraphics/png.png' width='16' height='16' alt='musrgui-editor-v0.png' /></span><span class="foswikiHidden">png</span> </td>
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<td class="foswikiTableCol1 foswikiLast"> <a href="../pub/MUSR/MusrGui/musrgui-editor-v0.png">musrgui-editor-v0.png</a> </td>
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<td class="foswikiTableCol2 foswikiLast"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrgui-editor-v0.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
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<td class="foswikiTableCol3 foswikiLast" style="text-align:right"> 37 K </td>
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<td class="foswikiTableCol4 foswikiLast"> <span class="foswikiNoBreak">10 Apr 2009 - 14:53</span> </td>
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<td class="foswikiTableCol5 foswikiLast"> <a href="https://intranet.psi.ch/Main/UnknownUser">UnknownUser</a> </td>
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<td class="foswikiTableCol6 foswikiLastCol foswikiLast"> musrgui options available upon right clicking a open msr-file </td>
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<div class="patternInfo">This topic: MUSR<span class='foswikiSeparator'> > </span><a class="foswikiCurrentWebHomeLink" href="WebHome.html">WebHome</a> > <a href="MusrFit.html">MusrFit</a><span class='foswikiSeparator'> > </span>MusrGui <br />
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Topic revision: <span class='patternRevInfo'>14 May 2017, <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a></span></div>
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