Andreas Suter
6c8ce66e1d
3='everything'). This allows to tune the Minuit2 output. (ii) added the possibilty to give the fit range in bins. For details see the docu.
403 lines
35 KiB
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403 lines
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<div id="patternMainContents"><div class="patternTop"><span class="patternHomePath foswikiLeft"><a href="WebHome.html" class="foswikiCurrentWebHomeLink">MUSR</a><span class='natSep'> » </span><a href="MusrFit.html">MusrFit</a><span class='natSep'> » </span><a href="MusrGui.html" class="foswikiCurrentTopicLink">MusrGui</a></span><span class="patternToolBar foswikiRight"><span><a href='MusrGuic99a.html?cover=print;cover=print' rel='nofollow' title='Printable version of this topic' accesskey='p'><span class='foswikiAccessKey'>P</span>rint version</a></span><a href="https://intranet.psi.ch/MUSR/MusrGui?restrictions=on" id="restriction_link"><img src='../pub/System/PsiSkin/lock_open.png' class='lock' height='16' width='23' title='open in PSI - click for more information'/></a></span><div class="foswikiClear"></div></div><div class="foswikiContentHeader">
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<h1><a name="A_61_61musrgui_47_musredit_61_61"></a> <code><b>musrgui / musredit</b></code> </h1>
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<p></p>
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<a name="foswikiTOC"></a><div class="foswikiToc"> <ul>
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<li> <a href="MusrGui.html#A_61_61musrgui_47_musredit_61_61"> musrgui / musredit </a>
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</li> <li> <a href="MusrGui.html#A_1_Introduction"> 1 Introduction </a>
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</li> <li> <a href="MusrGui.html#A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"> 2 Available Executables, Configuration Files and their Basic Usage </a> <ul>
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<li> <a href="MusrGui.html#A_2.1_musrgui_47_musredit"> 2.1 musrgui / musredit </a>
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</li> <li> <a href="MusrGui.html#A_2.2_musrgui_startup.xml_47_musredit_startup.xml"> 2.2 musrgui_startup.xml / musredit_startup.xml </a>
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</li></ul>
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</li> <li> <a href="MusrGui.html#A_3_61_61musrfit_61_61_Features"> 3 musrfit Features </a>
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</li> <li> <a href="MusrGui.html#A_4_Editor_Features"> 4 Editor Features </a>
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</li> <li> <a href="MusrGui.html#A_5_Bugtracking"> 5 Bugtracking </a>
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</li></ul>
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<p></p>
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<h1><a name="A_1_Introduction"></a> 1 Introduction </h1>
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<code>musrgui</code> and <code>musredit</code> are editors which also provide a graphical user interface to the programs contained in the <code><a href="MusrFit.html">musrfit</a></code> suite and are intended to help the user handle <code>musrfit</code> msr files. They are implemented in <code>C++</code> and use the <a href="http://qt.nokia.com/" target="_top">Qt</a> framework. Principally, <code>musrgui</code> and <code>musredit</code> are doing the same, but are based on different Qt versions. <code>musrgui</code> is based on Qt 3.x and will only be maintained on bug-fixing level since the Qt 3.x licensing is less straight forward than the Qt 4.x one. <code>musredit</code> is based on Qt 4.6 (or above) and this is the program which will be developed further.<br>
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On this documentation page only the features related to <code>musrfit</code> are described—the basic editor functions which should be self-explanatory are not.
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<strong><span class='foswikiRedFG'>Before going on using <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read the <a href="MusrFit.html">manual</a> of <code>musrfit</code> first!</span></strong>
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<p></p>
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<h1><a name="A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"></a> 2 Available Executables, Configuration Files and their Basic Usage </h1>
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<a name="MusrEdit"></a>
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<h2><a name="A_2.1_musrgui_47_musredit"></a> 2.1 musrgui / musredit </h2>
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<code>musrgui</code> / <code>musredit</code> are the editor executables. If called from within a shell they accept a few optional parameters: <dl>
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<dt> <msr_files> </dt><dd> file names of the msr files that should be opened in separate editor tabs on startup of <code>musrgui</code> / <code>musredit</code>.
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</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
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</dd> <dt> --version </dt><dd> prints the version number of <code>musrgui</code> / <code>musredit</code>
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</dd></dl>
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<p></p>
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If called without any parameters an empty editor window opens.
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<p></p>
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<a name="MusreditStartupXml"></a>
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<h2><a name="A_2.2_musrgui_startup.xml_47_musredit_startup.xml"></a> 2.2 musrgui_startup.xml / musredit_startup.xml </h2>
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<code><b>musrgui_startup.xml</b></code> / <code><b>musredit_startup.xml</b></code> are configuration files located at the <code>musrgui</code> / <code>musredit</code> binary path. It is also possible to have another version of this file in the working directory which then will be used!
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<p></p>
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In this file the following XML tags are allowed to define settings and might proof useful for all users of <code>musrgui</code> / <code>musredit</code>: <dl>
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<dt> <general></general> </dt><dd> set the default paths to executables and files in this environment <dl>
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<dt> <exec_path>PATH_TO_EXEC</exec_path> </dt><dd> set the path <strong>PATH_TO_EXEC</strong> where the executables <code>musrfit</code>, <code>musrview</code>, <code>musrt0</code>, etc. can be found (inside the <general> environment)
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</dd> <dt> <default_save_path>SAV_PATH</default_save_path> </dt><dd> specify the path <strong>SAV_PATH</strong> where <code>musrgui</code> / <code>musredit</code> point by default when opening and saving msr files (inside the <general> environment)
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</dd> <dt> <msr_default_file_path>MSR_DEF_PATH</msr_default_file_path> </dt><dd> set the path <strong>MSR_DEF_PATH</strong> where the <a href="#MusrfitFeatures" class="foswikiCurrentTopicLink">default msr files provided by</a> <code>musrgui</code> are stored (inside the <general> environment)
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</dd> <dt> <title_from_data_file>y/n</title_from_data_file> </dt><dd> specify if <code>musrfit</code> should be called with the <a href="MusrFit.html#MusrFit">-t option</a> by default (inside the <general> environment)
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</dd> <dt> <enable_musrt0>y/n</enable_musrt0> </dt><dd> specify if <code><a href="MusrFit.html#MusrT0">musrt0</a></code> can be called from within <code>musrgui</code> / <code>musredit</code> (inside the <general> environment)
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</dd></dl>
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</dd> <dt> <font_settings></font_settings> </dt><dd> set the default font in this environment <dl>
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<dt> <font_name>FONT</font_name> </dt><dd> specify the name of the font <strong>FONT</strong> to be used by default in <code>musrgui</code> / <code>musredit</code> (inside the <font_settings> environment)
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</dd> <dt> <font_size>N</font_size> </dt><dd> specify the size <strong>N</strong> of the font to be used by default in <code>musrgui</code> / <code>musredit</code> (inside the <font_settings> environment)
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</dd></dl>
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</dd> <dt> <msr_file_defaults></msr_file_defaults> </dt><dd> put the default settings for newly created msr files in this environment <dl>
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<dt> <beamline>BL</beamline> </dt><dd> set the name of the muon beamline <strong>BL</strong> here (inside a <msr_file_defaults>-environment)
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</dd> <dt> <institute>INST</institute> </dt><dd> set the name of the facility <strong>INST</strong> where the beamline <strong>BL</strong> is located. Valid settings are <strong>PSI</strong>, <strong>RAL</strong>, <strong>JPARC</strong>, and <strong>TRIUMF</strong> (inside a <msr_file_defaults> environment)
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</dd> <dt> <file_format>FF</file_format> </dt><dd> specify the default data file format <strong>FF</strong> here. Valid formats are <strong>NEXUS</strong>, <strong>ROOT-NPP</strong>, <strong>ROOT-PPC</strong>, <strong>PSI-BIN</strong>, <strong>PSI-MDU</strong>, <strong>MDU-ASCII</strong>, <strong>WKM</strong>, <strong>MUD</strong>, <strong>ASCII</strong>, and <strong>DB</strong> (inside a <msr_file_defaults> environment)
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</dd> <dt> <lifetime_correction>y/n</lifetime_correction> </dt><dd> choose if by default the <strong>lifetimecorrection</strong> <a href="MusrFit.html#LifeTimeCorrection">option</a> should be set (inside a <msr_file_defaults> environment)
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</dd></dl>
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</dd> <dt> <msr2data_defaults></msr2data_defaults> </dt><dd> define the default <a href="Msr2Data.html#OptionalParameters">options</a> for calling <code><a href="Msr2Data.html">msr2data</a></code> in this environment; the options set here are ticked by default in the <a href="Msr2Data.html#MusrGuiInterface">graphical interface</a> of <code>musrgui</code> / <code>musredit</code>. <dl>
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<dt> <chain_fit>y/n</chain_fit> </dt><dd> (un)set the chain fit (<strong>!</strong>) option (inside a <msr2data_defaults> environment)
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</dd> <dt> <write_data_header>y/n</write_data_header> </dt><dd> (un)set the <strong>noheader</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <ignore_data_header_info>y/n</ignore_data_header_info> </dt><dd> (un)set the <strong>nosummary</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <keep_minuit2_output>y/n</keep_minuit2_output> </dt><dd> (un)set the <strong>-k</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <write_column_data>y/n</write_column_data> </dt><dd> (un)set the <strong>data</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <create_msr_file_only>y/n</create_msr_file_only> </dt><dd> (un)set the <strong>msr</strong> option in case a template run is specified (inside a <msr2data_defaults> environment)
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</dd> <dt> <fit_only>y/n</fit_only> </dt><dd> (un)set the <strong>fit</strong> option in case no template run is specified (inside a <msr2data_defaults> environment)
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</dd> <dt> <global>y/n</global> </dt><dd> (un)set the <strong>global</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <global_plus>y/n</global_plus> </dt><dd> (un)set the <strong>global+</strong> option (inside a <msr2data_defaults> environment)
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</dd> <dt> <recreate_data_file>y/n</recreate_data_file> </dt><dd> (un)set the <code>musrgui</code> / <code>musredit</code> option for recreating the output file (inside a <msr2data_defaults> environment)
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</dd> <dt> <open_file_after_fitting>y/n</open_file_after_fitting> </dt><dd> (un)set the <code>musrgui</code> / <code>musredit</code> option for opening msr files after fitting (inside a <msr2data_defaults> environment)
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</dd></dl>
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</dd></dl>
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<p></p>
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Additionally, there are some settings defined in this XML file which should be only changed by experienced users who like to add new features to <code>musrgui</code> / <code>musredit</code>: <dl>
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<dt> <help_section></help_section> </dt><dd> define various help messages in this environment <dl>
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<dt> <help_main>HELP TEXT</help_main> </dt><dd> set the main help message <strong>HELP TEXT</strong> here (inside a <help_section> environment)
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</dd></dl>
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</dd> <dt> <func_pixmap_path>PIX_PATH</func_pixmap_path> </dt><dd> set the path <strong>PIX_PATH</strong> to <img alt="LaTeX_logo.png" src="../pub/MUSR/MusrGui/LaTeX_logo.png" /> pixmaps visualizing the various supported theory functions
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</dd> <dt> <theory_functions></theory_functions> </dt><dd> define the functions for a msr file's THEORY block <a href="MusrFit.html#TheoryTable">according to the correct syntax</a> in this environment <dl>
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<dt> <func></func> </dt><dd> specify a function here (inside a <theory_functions> environment) <dl>
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<dt> <name>NAME</name> </dt><dd> the <strong>NAME</strong> of the function in the msr file (inside a <func> environment)
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</dd> <dt> <comment>COMMENT</comment> </dt><dd> description of the used parameters (inside a <func> environment)
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</dd> <dt> <label>LABEL</label> </dt><dd> <strong>LABEL</strong> of the function in the <code>musrgui</code> / <code>musredit</code> menu (inside a <func> environment)
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</dd> <dt> <pixmap>PIXMAP</pixmap> </dt><dd> <img alt="LaTeX_logo.png" src="../pub/MUSR/MusrGui/LaTeX_logo.png" /> picture used to describe the function and stored in the <strong>PIX_PATH</strong> (inside a <func> environment)
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</dd> <dt> <params>N</params> </dt><dd> number of parameters <strong>N</strong> used by the function (inside a <func> environment)
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</dd></dl>
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</dd></dl>
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</dd></dl>
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<p></p>
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An example of the <code><b>musrgui_startup.xml</b></code> looks like:
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<pre class="html">
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<?xml version="1.0" encoding="UTF-8"?>
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<musrgui_startup xmlns="https://intranet.psi.ch/MUSR/MusrGui">
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<general>
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<exec_path>/usr/local/bin</exec_path>
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<default_save_path>./</default_save_path>
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<msr_default_file_path>/home/user/analysis/musrfit/src/musrgui</msr_default_file_path>
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</general>
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<font_settings>
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<font_name>Courier New</font_name>
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<font_size>10</font_size>
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</font_settings>
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<msr_file_defaults>
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<beamline>mue4</beamline>
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<institute>psi</institute>
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<file_format>root-npp</file_format>
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<lifetime_correction>y</lifetime_correction>
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</msr_file_defaults>
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<msr2data_defaults>
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<chain_fit>y</chain_fit>
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<write_data_header>y</write_data_header>
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<ignore_data_header_info>n</ignore_data_header_info>
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<keep_minuit2_output>n</keep_minuit2_output>
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<write_column_data>n</write_column_data>
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<recreate_data_file>n</recreate_data_file>
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<open_file_after_fitting>y</open_file_after_fitting>
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<create_msr_file_only>n</create_msr_file_only>
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<fit_only>n</fit_only>
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<global>n</global>
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<global_plus>n</global_plus>
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</msr2data_defaults>
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<help_section>
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<help_main>
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For a detailed description of the aim and structure of a msr file see http://lmu.web.psi.ch/facilities/software/musrfit/user/MUSR/MusrFit.html
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</help_main>
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</help_section>
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<func_pixmap_path>/home/user/analysis/musrfit/src/musrgui/latex_images</func_pixmap_path>
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<theory_functions>
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<func>
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<name>asymmetry</name>
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<comment></comment>
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<label>Asymmetry</label>
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<pixmap>asymmetry.png</pixmap>
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<params>1</params>
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</func>
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<func>
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<name>simplExpo</name>
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<comment>(rate)</comment>
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<label>simple Exp</label>
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<pixmap>simpleExp.png</pixmap>
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<params>1</params>
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</func>
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<func>
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<name>simplGss</name>
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<comment>(rate)</comment>
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<label>simple Gauss</label>
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<pixmap>simpleGauss.png</pixmap>
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<params>1</params>
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</func>
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</theory_function>
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</musrgui_startup>
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</pre>
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<p></p>
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<a name="MusrfitFeatures"></a>
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<h1><a name="A_3_61_61musrfit_61_61_Features"></a> 3 <code><b>musrfit</b></code> Features </h1>
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The features of <code>musrfit</code> which can be accessed by the graphical front ends <code>musrgui</code> / <code>musredit</code> are described in the following. All functions can either be called by choosing them from the MusrFit menu, by clicking the respective button in the MusrFit bar, or by using a keyboard shortcut.
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<p></p> <dl>
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<dt> <img alt="musrasym.png" src="../pub/MUSR/MusrGui/musrasym.png" /> Asymmetry Default (Alt+a) </dt><dd> Generate a full msr file suitable for the <a href="MusrFit.html#FitTypes">fit type</a> <strong>2</strong> of <code>musrfit</code> from defaults. Calling this function opens a window where the relative path and file name to a data file as well as the file format that should be used have to be specified. For instance if the data file <code><b>/path-to-datadir/2007/lem07_his_8472.root</b></code> should be used and <code><b>/path-to-datadir</b></code> is on the path where <code>musrfit</code> <a href="MusrFit.html#PathToDataFiles">looks for data files</a> then the file name would be <code><b>2007/lem07_his_8472</b></code> and the file format either <strong>ROOT-NPP</strong> or <strong>ROOT-PPC</strong>.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrsinglehisto.png" src="../pub/MUSR/MusrGui/musrsinglehisto.png" /> Single-Histogram Default (Alt+h) </dt><dd> Generate a full msr file suitable for the <a href="MusrFit.html#FitTypes">fit type</a> <strong>0</strong> of <code>musrfit</code> from defaults. Calling this function opens a window where the relative path and file name to a data file as well as the file format that should be used have to be specified. For instance if the data file <code><b>/path-to-datadir/d2007/deltat_pta_gps_8472.bin</b></code> should be used and <code><b>/path-to-datadir</b></code> is on the path where <code>musrfit</code> <a href="MusrFit.html#PathToDataFiles">looks for data files</a> then the file name would be <code><b>d2007/deltat_pta_gps_8472</b></code> and the file format <strong>PSI-BIN</strong>.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrcalcchisq.png" src="../pub/MUSR/MusrGui/musrcalcchisq.png" /> Calculate Chisq (Alt+c) </dt><dd> <pre class="bash">musrfit <msr_file> --chisq-only</pre> is called for the <strong><msr_file></strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrfit.png" src="../pub/MUSR/MusrGui/musrfit.png" /> Fit (Alt+f) </dt><dd> <pre class="bash">musrfit <msr_file> [optional parameters]</pre> is called for the <strong><msr_file></strong> selected in the editor. The optional parameters may be chosen under <a href="#MusrPrefs" class="foswikiCurrentTopicLink">Preferences</a>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrswap.png" src="../pub/MUSR/MusrGui/musrswap.png" /> Swap Msr ↔ Mlog (Alt+s) </dt><dd> Swap the msr and mlog files. E.g., for a file called <code><b>8472_zf.msr</b></code>, this is copied to <code><b>8472_zf.mlog</b></code> and vice versa.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrmsr2data.png" src="../pub/MUSR/MusrGui/musrmsr2data.png" /> Msr2data (Alt+m) </dt><dd> Opens a graphical interface to the <code>msr2data</code> program described in detail in its own <a href="Msr2Data.html#MusrGuiInterface">manual</a>.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrview.png" src="../pub/MUSR/MusrGui/musrview.png" /> View (Alt+v) </dt><dd> <pre class="bash">musrview <msr_file></pre> is called for the <strong><msr_file></strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrView">manual</a> of <code>musrfit</code>.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrt0.png" src="../pub/MUSR/MusrGui/musrt0.png" /> T0 (Alt+t) </dt><dd> <pre class="bash">musrt0 <msr_file></pre> is called for the <strong><msr_file></strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrT0">manual</a> of <code>musrfit</code>.
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</dd></dl>
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<p></p>
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<a name="MusrPrefs"></a> <dl>
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<dt> <img alt="musrprefs.png" src="../pub/MUSR/MusrGui/musrprefs.png" /> Preferences (Alt+p) </dt><dd> Opens a window in which the optional parameters that should be passed to <code>musrfit</code> can be chosen. These options are <code><b>--keep-mn2-output</b></code>, <code><b>--dump ascii</b></code>, <code><b>--dump root</b></code>, and <code><b>--title-from-data-file</b></code>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>. Additionally, the access to <code>musrt0</code> can be enabled temporarily.
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</dd></dl>
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<p></p> <dl>
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<dt> <img alt="musrdump.png" src="../pub/MUSR/MusrGui/musrdump.png" /> Dump Header </dt><dd> Opens a file dialog which allows to select a μSR data file. When this file can be read, the run header info is dumped into a dialog window. Essentially this calls <code><b>dump_header</b></code> internally.
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</dd></dl>
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<p></p>
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<a name="EditorFeatures"></a>
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<h1><a name="A_4_Editor_Features"></a> 4 Editor Features </h1>
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Besides the functions described above and which are mostly interfacing <code>musrfit/msr2data</code> the editors of <code>musrgui</code> / <code>musredit</code> offer various functions for manipulating especially <code>musrfit</code> msr files:
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<img src="../pub/MUSR/MusrGui/musrgui-editor-v0.png" alt="musrgui editor features" width='415' height='566' align="right" /> <ul>
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<li> Upon right-clicking an open msr file a menu as shown to the right is displayed which offers the addition of any valid msr file block or theory function. In case a simple theory function is chosen, the function will be inserted into the THEORY block using the <a href="MusrFit.html#TheoryTable">correct syntax</a>. If one chooses to add a whole block to the file a dialog opens in which the necessary information for each block as described in the <a href="MusrFit.html#DescriptionOfTheMsrFileFormat">manual</a> of <code>musrfit</code> can be supplied. <span class='foswikiBlueFG'>This feature is available only in <code>musrgui</code>. In <code>musredit</code> the respective functions can be accessed through the <em>Edit</em> menu.</span>
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</li> <li> In order to comment or uncomment lines in a msr file select the according lines and apply <strong>Edit → (Un)Comment</strong> or use the keyboard shortcut <strong>Ctrl+(Shift)+m</strong>.
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</li></ul>
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<p></p>
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<a name="BugTracking"></a>
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<h1><a name="A_5_Bugtracking"></a> 5 Bugtracking </h1>
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<p></p>
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For reporting bugs or requesting new features and improvements please use the <a href="https://tracker.intranet.psi.ch/jira/browse/MUSR" target="_top">PSI Tracker</a> or send an e-mail to A. Suter.
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<p></p>
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-- <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> & <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a> </div>
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