1490 lines
44 KiB
Perl
Executable File
1490 lines
44 KiB
Perl
Executable File
#use strict;
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package MSR;
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my $EMPTY="";
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my $SPACE=" ";
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my %DATADIRS = (
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"LEM", "/mnt/data/nemu/his",
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"GPS", "/afs/psi.ch/project/bulkmusr/data/gps",
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"LTF", "/afs/psi.ch/project/bulkmusr/data/ltf",
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"Dolly", "/afs/psi.ch/project/bulkmusr/data/dolly",
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"GPD", "/afs/psi.ch/project/bulkmusr/data/gpd"
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);
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my %BeamLines = ( "LEM", "MUE4", "GPS", "PIM3", "LTF", "PIM3", "Dolly", "PIE1", "GPD", "PIE1" );
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my %Def_Format =
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( "LEM", "ROOT-NPP", "GPS", "PSI-BIN", "LTF", "PSI-BIN", "Dolly", "PSI-BIN" , "GPD", "PSI-BIN");
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# Additions to paremeters' names
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my $erradd = "d";
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my $minadd = "_min";
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my $maxadd = "_max";
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##########################################################################
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# CreateMSR
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#
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# Input in %All
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# Required:
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# $All{"FitType1/2/3"} - Function types, 3 components
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# $All{"LRBF"} - Histograms, comma separated
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# $All{"Tis"}
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# $All{"Tfs"}
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# $All{"BINS"}
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# $All{"FILENAME"}
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# $All{"go"}
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# $All{"TITLE"}
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# $All{"RunNumbers"}
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# $All{"FitAsyType"}
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# $All{"BeamLine"}
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# $All{"YEAR"}
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#
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# Optional:
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# $All{"Sh_$Param"}
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# $All{"ltc"}
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# $All{"$Param"} value, error, min, and max
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# $All{"logx/y"}
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# $All{"Xi/f"}
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#
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# Output
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# $Full_T_Block - Full theory block
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# @Paramcomp - Space separated list of parameters for each component
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# FILENAME.msr - MSR file saved
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#
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##########################################################################
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sub CreateMSR {
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my %All = %{$_[0]};
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# Start with empty array
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my @FitTypes = ();
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foreach ($All{"FitType1"},$All{"FitType2"},$All{"FitType3"}) {
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if ($_ ne "None") {
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@FitTypes=(@FitTypes,$_);
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}
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}
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my @Hists = split( /,/, $All{"LRBF"} );
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my @TiVals = split( /,/, $All{"Tis"} );
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my @TfVals = split( /,/, $All{"Tfs"} );
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my @BINVals = split( /,/, $All{"BINS"} );
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my $FILENAME = $All{"FILENAME"};
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my $BeamLine = $All{"BeamLine"};
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my $YEAR = $All{"YEAR"};
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my $Step = $All{"go"};
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if ( $Step eq "PLOT" ) {
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$FITMINTYPE = $EMPTY;
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}
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elsif ( $Step eq "MIGRAD" ) {
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$FITMINTYPE = "MINIMIZE\nMIGRAD\nHESSE";
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}
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elsif ( $Step eq "MINOS" ) {
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$FITMINTYPE = "MIGRAD\nMINOS";
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}
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elsif ( $Step eq "SIMPLEX" ) {
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$FITMINTYPE = "SCAN\nSIMPLEX";
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}
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# First create the THEORY Block
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my ($Full_T_Block,$Paramcomp_ref)=MSR::CreateTheory(@FitTypes);
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my @Paramcomp = @$Paramcomp_ref;
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# Counter for RUNS
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my $iRun = 1;
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# Counter of Params
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my $PCount = 1;
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# Need to select here RUNSAuto or RUNSManual
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# $RUNSType = 0 (Auto) or 1 (Manual)
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my $RUNSType = 0;
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my @RUNS=();
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if ($All{"RunNumbers"} ne "") {
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@RUNS=split( /,/, $All{"RunNumbers"});
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$RUNSType = 0;
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}
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elsif ($All{"RunFiles"} ne "") {
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@RUNS=split( /,/, $All{"RunFiles"});
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$RUNSType = 1;
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}
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# $shcount is a counter for shared parameters
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if ( $#RUNS == 0 ) {
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my $shcount = 1;
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}
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else {
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if ( $All{"Sh_Alpha"} == 1 ) {
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my $shcount = 1;
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} else {
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my $shcount = 0;
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}
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}
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$shcount = 1;
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my $RUN_Block = $EMPTY;
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my $RUNS_Line = $EMPTY;
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# range order
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my $Range_Order = 1;
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foreach my $RUN (@RUNS) {
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#######################################################################
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# Prepare the Parameters and initial values block
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my $component = 0;
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my $Single_RUN = $EMPTY;
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# Prepare map line for each run
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my $MAP_Line = "map ";
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# How many non-shared parameter for this RUN?
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my $nonsh = 0;
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# Prepeare Alpha line for the RUN block. Empty initially.
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my $Alpha_Line = $EMPTY;
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# Loop over all components in the fit
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foreach my $FitType (@FitTypes) {
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++$component;
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my $Parameters = $Paramcomp[ $component - 1 ];
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my @Params = split( /\s+/, $Parameters );
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# For the first component we need Alpha for Asymmetry fits
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if ($component == 1) {
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unshift( @Params, "Alpha" );
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}
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foreach $Param (@Params) {
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$Param_ORG = $Param;
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if ( ($#FitTypes != 0) && ($Param ne "Alpha") ) {
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$Param = join( $EMPTY, $Param, "_", "$component" );
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}
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# If we have only one RUN then everything is shared
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if ( $#RUNS == 0 ) {
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$Shared = 1;
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}
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# Otherwise check input if it was marked as shared
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else {
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$Shared = $All{"Sh_$Param"};
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}
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# Alpha Line
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#
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# If you encounter alpha in the parameters list make sure
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# to fill this line for the RUN block.
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if ( $Param_ORG eq "Alpha" ) {
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if ($Shared) {
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# If alpha is shared use always the same line
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$Alpha_Line = "alpha 1\n";
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}
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else {
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# Otherwise modify alpha line accordingly
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$Alpha_Line = "alpha $PCount\n";
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}
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}
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# End of Alpha Line
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####################################################################################################
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# Start preparing the parameters block
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if ($Shared) {
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# Parameter is shared enough to keep order from first run
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if ( $iRun == 1 ) {
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$Full_T_Block =~ s/$Param_ORG/$PCount/;
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++$shcount;
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++$PCount;
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}
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} else {
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# Parameter is not shared, use map unless it is a single RUN fit
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# Skip adding to map line in these cases
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if ( $Param ne "Alpha" && $#RUNS != 0 )
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{
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++$nonsh;
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$Full_T_Block =~ s/$Param_ORG/map$nonsh/;
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$MAP_Line = join( ' ', $MAP_Line, $PCount );
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}
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++$PCount;
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}
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$NtotPar = $PCount;
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}
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}
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# Finished preparing the FITPARAMETERS block
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#######################################################################
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# For each defined range we need a block in the RUN-Block
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# Also for each histogram in Single Histograms fits
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# Also for Imaginaryand and Real for RRF fits
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$RUN = $RUNS[ $iRun - 1 ];
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if ($All{"RUNSType"}) {
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$RUN_Line = MSR::RUNFileNameMan($RUN);
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} else {
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$RUN_Line = MSR::RUNFileNameAuto($RUN,$YEAR,$BeamLine);
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}
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$Type_Line = "fittype 2";
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$PLT = 2;
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$Hist_Lines =
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"forward $Hists[0]\nbackward $Hists[1]";
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$Bg_Line = "background";
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$Data_Line = "data";
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$T0_Line = "t0";
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$NHist=1;
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foreach $Hist (@Hists) {
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foreach ("t0","Bg1","Bg2","Data1","Data2") {
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$Name = "$_$NHist";
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# If empty fill with defaults
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if ($All{$Name} eq "") {
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$All{$Name}=MSR::T0BgData($_,$Hist,$BeamLine);
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}
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}
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$Bg_Line = $Bg_Line." ".$All{"Bg1$NHist"}." ".$All{"Bg2$NHist"};
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$Data_Line =$Data_Line." ".$All{"Data1$NHist"}." ".$All{"Data2$NHist"};
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if ($All{"t0$NHist"} ne "") {
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$T0_Line=$T0_Line." ".$All{"Data1$NHist"};
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}
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$NHist++;
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}
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$FRANGE_Line = "fit TINI TFIN";
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$PAC_Line = "packing BINNING";
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if ($T0_Line ne "t0") {
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print "I am here\n";
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$Data_Line= $Data_Line."\n".$T0_Line;
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}
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$Single_RUN =
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"$RUN_Line\n$Type_Line\n$Alpha_Line$Hist_Lines\n$Bg_Line\n$Data_Line\n$MAP_Line\n$FRANGE_Line\n$PAC_Line\n\n";
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# Now add the appropriate values of fit range and packing
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my $Range_Min = 8;
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my $Range_Max = 0;
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my $k = 0;
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foreach my $Ti (@TiVals) {
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my $Tf = $TfVals[$k];
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my $BIN = $BINVals[$k];
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$RUN_Block = $RUN_Block . $Single_RUN;
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$RUN_Block =~ s/TINI/$Ti/g;
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$RUN_Block =~ s/TFIN/$Tf/g;
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$RUN_Block =~ s/BINNING/$BIN/g;
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# For multiple ranges use this
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if ( $Ti < $Range_Min ) { $Range_Min = $Ti; }
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if ( $Tf > $Range_Max ) { $Range_Max = $Tf; }
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$RUNS_Line = "$RUNS_Line " . $Range_Order;
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++$k;
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++$Range_Order;
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}
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++$iRun;
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}
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# The number of runs is
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$NRUNS = $iRun - 1;
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# Start constructing all blocks
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my $TitleLine = $All{"TITLE"}."\n# Run Numbers: ".$All{"RunNumbers"};
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$TitleLine =~ s/,/:/g;
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# Get parameter block from MSR::PrepParamTable(\%All);
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my $FitParaBlk = "
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###############################################################
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FITPARAMETER
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###############################################################
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# No Name Value Err Min Max ";
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my %PTable=MSR::PrepParamTable(\%All);
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my $NParam=scalar keys( %PTable );
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# Fill the table with labels and values of parametr
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for (my $iP=0;$iP<$NParam;$iP++) {
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my ($Param,$value,$error,$minvalue,$maxvalue,$RUNtmp) = split(/,/,$PTable{$iP});
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if ( $minvalue == $maxvalue ) {
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$minvalue = $EMPTY;
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$maxvalue = $EMPTY;
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}
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$PCount=$iP+1;
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$FitParaBlk = $FitParaBlk."
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$PCount $Param $value $error $error $minvalue $maxvalue";
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}
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$Full_T_Block = "
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###############################################################
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THEORY
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###############################################################
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$Full_T_Block
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";
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$RUN_Block =
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"###############################################################
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$RUN_Block";
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$COMMANDS_Block =
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"###############################################################
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COMMANDS
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FITMINTYPE
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SAVE
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";
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$COMMANDS_Block =~ s/FITMINTYPE/$FITMINTYPE/g;
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# Check if log x and log y are selected
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my $logxy = $EMPTY;
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if ( $All{"logx"} eq "y" ) { $logxy = $logxy . "logx\n"; }
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if ( $All{"logy"} eq "y" ) { $logxy = $logxy . "logy\n"; }
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# Check if a plot range is defined (i.e. different from fit)
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$PRANGE_Line = "use_fit_ranges";
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if ( $All{"Xi"} != $All{"Xf"} ) {
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# if ($Yi != $Yf) {
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$PRANGE_Line = "range ".$All{"Xi"}." ".$All{"Xf"}." ".$All{"Yi"}." ".$All{"Yf"};
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# } else {
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# $PRANGE_Line = "range $Xi $Xf";
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# }
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}
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$PLOT_Block =
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"###############################################################
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PLOT $PLT
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runs $RUNS_Line
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$PRANGE_Line
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$logxy";
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if ($All{"FUNITS"} eq "") {$All{"FUNITS"}="MHz";}
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if ($All{"FAPODIZATION"} eq "") {$All{"FAPODIZATION"}="STRONG";}
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if ($All{"FPLOT"} eq "") {$All{"FPLOT"}="POWER";}
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$FOURIER_Block=
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"###############################################################
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FOURIER
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units FUNITS # units either 'Gauss', 'MHz', or 'Mc/s'
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fourier_power 12
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apodization FAPODIZATION # NONE, WEAK, MEDIUM, STRONG
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plot FPLOT # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
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phase 8.50";
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$FOURIER_Block=~ s/FUNITS/$All{"FUNITS"}/g;
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$FOURIER_Block=~ s/FAPODIZATION/$All{"FAPODIZATION"}/g;
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$FOURIER_Block=~ s/FPLOT/$All{"FPLOT"}/g;
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# Don't know why but it is needed initially
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$STAT_Block =
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"###############################################################
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STATISTIC --- 0000-00-00 00:00:00
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*** FIT DID NOT CONVERGE ***";
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# Empty line at the end of each block
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my $FullMSRFile = "$TitleLine$FitParaBlk\n$Full_T_Block\n$RUN_Block\n$COMMANDS_Block\n$PLOT_Block\n$FOURIER_Block\n$STAT_Block\n";
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# Open output file FILENAME.msr
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open( OUTF,q{>},"$FILENAME.msr" );
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print OUTF ("$FullMSRFile");
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close(OUTF);
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return($Full_T_Block,\@Paramcomp);
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}
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########################
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# CreateMSRSingleHist
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########################
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sub CreateMSRSingleHist {
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my %All = %{$_[0]};
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# Start with empty array
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my @FitTypes = ();
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foreach ($All{"FitType1"},$All{"FitType2"},$All{"FitType3"}) {
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if ($_ ne "None") {
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@FitTypes=(@FitTypes,$_);
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}
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}
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my @Hists = split( /,/, $All{"LRBF"} );
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my @TiVals = split( /,/, $All{"Tis"} );
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my @TfVals = split( /,/, $All{"Tfs"} );
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my @BINVals = split( /,/, $All{"BINS"} );
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my $FILENAME = $All{"FILENAME"};
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my $BeamLine = $All{"BeamLine"};
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my $YEAR = $All{"YEAR"};
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my $Step = $All{"go"};
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if ( $Step eq "PLOT" ) {
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$FITMINTYPE = $EMPTY;
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} elsif ( $Step eq "MIGRAD" ) {
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$FITMINTYPE = "MINIMIZE\nMIGRAD\nHESSE";
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} elsif ( $Step eq "MINOS" ) {
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$FITMINTYPE = "MIGRAD\nMINOS";
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} elsif ( $Step eq "SIMPLEX" ) {
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$FITMINTYPE = "SCAN\nSIMPLEX";
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}
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# First create the THEORY Block
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my ($Full_T_Block,$Paramcomp_ref)=MSR::CreateTheory(@FitTypes);
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my @Paramcomp = @$Paramcomp_ref;
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# Counter for RUNS
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my $iRun = 1;
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# Counter of Params
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my $PCount = 1;
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# Need to select here RUNSAuto or RUNSManual
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# $RUNSType = 0 (Auto) or 1 (Manual)
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my $RUNSType = 0;
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my @RUNS=();
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if ($All{"RunNumbers"} ne "") {
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@RUNS=split( /,/, $All{"RunNumbers"});
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$RUNSType = 0;
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}
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elsif ($All{"RunFiles"} ne "") {
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@RUNS=split( /,/, $All{"RunFiles"});
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$RUNSType = 1;
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}
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# $shcount is a counter for shared parameters
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if ( $#RUNS == 0 && $#Hists == 0) {
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my $shcount = 1;
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} else {
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if ( $All{"Sh_N0"} == 1 ) {
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my $shcount = 1;
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} elsif ( $All{"Sh_NBg"} == 1 ) {
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my $shcount = 1;
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} else {
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my $shcount = 0;
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}
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}
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$shcount = 1;
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my $RUN_Block = $EMPTY;
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my $RUNS_Line = $EMPTY;
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# range order
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my $Range_Order = 1;
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foreach my $RUN (@RUNS) {
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#######################################################################
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# For a single histogram fit we basically need to repeat this for each hist
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foreach my $Hist (@Hists) {
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# Prepare the Parameters and initial values block
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my $component = 0;
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my $Single_RUN = $EMPTY;
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# Prepare map line for each run
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my $MAP_Line = "map ";
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# How many non-shared parameter for this RUN?
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my $nonsh = 0;
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# Prepeare N0/NBg line for the RUN block. Empty initially.
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my $N0Bg_Line = $EMPTY;
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# Loop over all components in the fit
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foreach my $FitType (@FitTypes) {
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++$component;
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my $Parameters = $Paramcomp[ $component - 1 ];
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my @Params = split( /\s+/, $Parameters );
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# For the first component we need N0 and NBg for SingleHist fits
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if ( $component == 1 && $All{"FitAsyType"} eq "SingleHist" ) {
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unshift( @Params, ( "N0", "NBg" ) );
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}
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foreach $Param (@Params) {
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$Param_ORG = $Param;
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$Param=$Param.$Hist;
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if ( ($#FitTypes != 0) && ( $Param ne "N0" && $Param ne "NBg" ) ) {
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$Param = join( $EMPTY, $Param, "_", "$component" );
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}
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# If we have only one RUN with one Histogram then everything is shared
|
|
if ( $#RUNS == 0 && $#Hists == 0 ) {
|
|
$Shared = 1;
|
|
}
|
|
# Otherwise check input if it was marked as shared
|
|
else {
|
|
$Shared = $All{"Sh_$Param"};
|
|
}
|
|
|
|
# N0 and NBg Lines
|
|
#
|
|
# If you encounter N0 in the parameters list make sure
|
|
# to fill this line for the RUN block.
|
|
if ( $Param_ORG eq "N0" ) {
|
|
if ($Shared) {
|
|
$N0Bg_Line = "norm 1\n";
|
|
}
|
|
else {
|
|
$N0Bg_Line = "norm $PCount\n";
|
|
}
|
|
|
|
# Optional - add lifetime correction for SingleHist fits
|
|
if ( $All{"ltc"} eq "y" ) {
|
|
$N0Bg_Line = $N0Bg_Line . "lifetimecorrection\n";
|
|
}
|
|
}
|
|
# If you encounter NBg in the parameters list make sure
|
|
# to fill this line for the RUN block.
|
|
elsif ( $Param_ORG eq "NBg" ) {
|
|
if ($Shared) {
|
|
$N0Bg_Line = $N0Bg_Line . "backgr.fit 2\n";
|
|
}
|
|
else {
|
|
$N0Bg_Line = $N0Bg_Line . "backgr.fit $PCount\n";
|
|
}
|
|
}
|
|
|
|
# End of N0 and NBg Lines
|
|
####################################################################################################
|
|
|
|
# Start preparing the parameters block
|
|
if ($Shared) {
|
|
# Parameter is shared enough to keep order from first run
|
|
if ( $iRun == 1 ) {
|
|
$Full_T_Block =~ s/$Param_ORG/$PCount/;
|
|
++$shcount;
|
|
++$PCount;
|
|
}
|
|
} else {
|
|
# Parameter is not shared, use map unless it is a single RUN fit
|
|
# Skip adding to map line in these cases
|
|
if ( $Param ne "N0" && $Param ne "NBg" && ($#RUNS != 0 || $#Hist != 0)) {
|
|
++$nonsh;
|
|
$Full_T_Block =~ s/$Param_ORG/map$nonsh/;
|
|
$MAP_Line = join( ' ', $MAP_Line, $PCount );
|
|
}
|
|
++$PCount;
|
|
}
|
|
$NtotPar = $PCount;
|
|
}
|
|
}
|
|
|
|
# Finished preparing the FITPARAMETERS block
|
|
#######################################################################
|
|
|
|
# For each defined range we need a block in the RUN-Block
|
|
# Also for each histogram in Single Histograms fits
|
|
# Also for Imaginaryand and Real for RRF fits
|
|
|
|
$RUN = $RUNS[ $iRun - 1 ];
|
|
|
|
if ($All{"RUNSType"}) {
|
|
$RUN_Line = MSR::RUNFileNameMan($RUN);
|
|
} else {
|
|
$RUN_Line = MSR::RUNFileNameAuto($RUN,$YEAR,$BeamLine);
|
|
}
|
|
|
|
$Type_Line = "fittype 0";
|
|
$PLT = 0;
|
|
$Hist_Lines = "forward HIST";
|
|
$Bg_Line = $EMPTY;
|
|
$Data_Line = "data";
|
|
|
|
foreach ("t0","Bg1","Bg2","Data1","Data2") {
|
|
$Name = "$_$Hist";
|
|
# If empty fill with defaults
|
|
if ($All{$Name} eq "") {
|
|
$All{$Name}=MSR::T0BgData($_,$Hist,$BeamLine);
|
|
}
|
|
}
|
|
$Bg_Line = $Bg_Line." ".$All{"Bg1$Hist"}." ".$All{"Bg2$Hist"};
|
|
$Data_Line =$Data_Line." ".$All{"Data1$Hist"}." ".$All{"Data2$Hist"};
|
|
if ($All{"t0$Hist"} ne "") {
|
|
$Data_Line=$Data_Line."\nt0 ".$All{"t0$Hist"};
|
|
}
|
|
|
|
# $MAP_Line = "map 0 0 0 0 0 0 0 0 0 0";
|
|
$FRANGE_Line = "fit TINI TFIN";
|
|
$PAC_Line = "packing BINNING";
|
|
|
|
$Single_RUN = $EMPTY;
|
|
$Tmp_Hist_Line = $Hist_Lines;
|
|
$Tmp_Hist_Line =~ s/HIST/$Hist/g;
|
|
$Single_RUN = $Single_RUN
|
|
. "$RUN_Line\n$Type_Line\n$N0Bg_Line$Tmp_Hist_Line\n$Data_Line\n$MAP_Line\n$FRANGE_Line\n$PAC_Line\n\n";
|
|
|
|
# Now add the appropriate values of fit range and packing
|
|
my $Range_Min = 8;
|
|
my $Range_Max = 0;
|
|
my $k = 0;
|
|
foreach my $Ti (@TiVals) {
|
|
my $Tf = $TfVals[$k];
|
|
my $BIN = $BINVals[$k];
|
|
$RUN_Block = $RUN_Block . $Single_RUN;
|
|
$RUN_Block =~ s/TINI/$Ti/g;
|
|
$RUN_Block =~ s/TFIN/$Tf/g;
|
|
$RUN_Block =~ s/BINNING/$BIN/g;
|
|
|
|
# For multiple ranges use this
|
|
if ( $Ti < $Range_Min ) { $Range_Min = $Ti; }
|
|
if ( $Tf > $Range_Max ) { $Range_Max = $Tf; }
|
|
$RUNS_Line = "$RUNS_Line " . $Range_Order;
|
|
++$k;
|
|
++$Range_Order;
|
|
}
|
|
}
|
|
++$iRun;
|
|
}
|
|
|
|
# The number of runs is
|
|
$NRUNS = $iRun - 1;
|
|
|
|
# Start constructing all block
|
|
my $TitleLine = $All{"TITLE"}."\n# Run Numbers: ".$All{"RunNumbers"};
|
|
$TitleLine =~ s/,/:/g;
|
|
|
|
# Get parameter block from MSR::PrepParamTable(\%All);
|
|
my $FitParaBlk = "
|
|
###############################################################
|
|
FITPARAMETER
|
|
###############################################################
|
|
# No Name Value Err Min Max ";
|
|
my %PTable=MSR::PrepParamTable(\%All);
|
|
my $NParam=scalar keys( %PTable );
|
|
# Fill the table with labels and values of parametr
|
|
for (my $iP=0;$iP<$NParam;$iP++) {
|
|
my ($Param,$value,$error,$minvalue,$maxvalue,$RUNtmp) = split(/,/,$PTable{$iP});
|
|
if ( $minvalue == $maxvalue ) {
|
|
$minvalue = $EMPTY;
|
|
$maxvalue = $EMPTY;
|
|
}
|
|
$PCount=$iP+1;
|
|
$FitParaBlk = $FitParaBlk."
|
|
$PCount $Param $value $error $error $minvalue $maxvalue";
|
|
}
|
|
|
|
$Full_T_Block = "
|
|
###############################################################
|
|
THEORY
|
|
###############################################################
|
|
$Full_T_Block
|
|
";
|
|
|
|
$RUN_Block =
|
|
"###############################################################
|
|
$RUN_Block";
|
|
|
|
$COMMANDS_Block =
|
|
"###############################################################
|
|
COMMANDS
|
|
FITMINTYPE
|
|
SAVE
|
|
";
|
|
$COMMANDS_Block =~ s/FITMINTYPE/$FITMINTYPE/g;
|
|
|
|
# Check if log x and log y are selected
|
|
my $logxy = $EMPTY;
|
|
if ( $All{"logx"} eq "y" ) { $logxy = $logxy . "logx\n"; }
|
|
if ( $All{"logy"} eq "y" ) { $logxy = $logxy . "logy\n"; }
|
|
|
|
# Check if a plot range is defined (i.e. different from fit)
|
|
$PRANGE_Line = "use_fit_ranges";
|
|
if ( $All{"Xi"} != $All{"Xf"} ) {
|
|
|
|
# if ($Yi != $Yf) {
|
|
$PRANGE_Line = "range ".$All{"Xi"}." ".$All{"Xf"}." ".$All{"Yi"}." ".$All{"Yf"};
|
|
|
|
# } else {
|
|
# $PRANGE_Line = "range $Xi $Xf";
|
|
# }
|
|
}
|
|
|
|
$PLOT_Block =
|
|
"###############################################################
|
|
PLOT $PLT
|
|
runs $RUNS_Line
|
|
$PRANGE_Line
|
|
$logxy";
|
|
|
|
if ($All{"FUNITS"} eq "") {$All{"FUNITS"}="MHz";}
|
|
if ($All{"FAPODIZATION"} eq "") {$All{"FAPODIZATION"}="STRONG";}
|
|
if ($All{"FPLOT"} eq "") {$All{"FPLOT"}="POWER";}
|
|
|
|
|
|
$FOURIER_Block=
|
|
"###############################################################
|
|
FOURIER
|
|
units FUNITS # units either 'Gauss', 'MHz', or 'Mc/s'
|
|
fourier_power 12
|
|
apodization FAPODIZATION # NONE, WEAK, MEDIUM, STRONG
|
|
plot FPLOT # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
|
|
phase 8.50";
|
|
|
|
$FOURIER_Block=~ s/FUNITS/$All{"FUNITS"}/g;
|
|
$FOURIER_Block=~ s/FAPODIZATION/$All{"FAPODIZATION"}/g;
|
|
$FOURIER_Block=~ s/FPLOT/$All{"FPLOT"}/g;
|
|
|
|
# Don't know why but it is needed initially
|
|
$STAT_Block =
|
|
"###############################################################
|
|
STATISTIC --- 0000-00-00 00:00:00
|
|
*** FIT DID NOT CONVERGE ***";
|
|
|
|
|
|
# Empty line at the end of each block
|
|
my $FullMSRFile = "$TitleLine$FitParaBlk\n$Full_T_Block\n$RUN_Block\n$COMMANDS_Block\n$PLOT_Block\n$FOURIER_Block\n$STAT_Block\n";
|
|
|
|
# Open output file FILENAME.msr
|
|
open( OUTF,q{>},"$FILENAME.msr" );
|
|
print OUTF ("$FullMSRFile");
|
|
close(OUTF);
|
|
return($Full_T_Block,\@Paramcomp);
|
|
}
|
|
|
|
|
|
########################
|
|
# Createheory
|
|
########################
|
|
sub CreateTheory {
|
|
# This subroutine requires:
|
|
# @FitTypes - the array of the types of components (summed)
|
|
|
|
# It will return:
|
|
# $Full_T_Block - the full theory block with names of parameters
|
|
# @Paramcomp - an array of space separated list of parameters
|
|
# each member of the array is one component
|
|
|
|
my (@FitTypes) = @_;
|
|
|
|
# Start from this theory line for the different fitting functions
|
|
my %THEORY = (
|
|
"asymmetry", "Asy",
|
|
"simplExpo", "Lam",
|
|
"generExpo", "Lam Bet",
|
|
"simpleGss", "Sgm",
|
|
"statGssKT", "Sgm",
|
|
"statGssKTLF", "Frq Sgm",
|
|
"dynGssKTLF", "Frq Sgm Lam",
|
|
"statExpKT", "Lam",
|
|
"statExpKTLF", "Frq Aa",
|
|
"dynExpKTLF", "Frq Aa Lam",
|
|
"combiLGKT", "Lam Sgm",
|
|
"spinGlass", "Lam gam q",
|
|
"rdAnisoHf", "Frq Lam",
|
|
"TFieldCos", "Phi Frq",
|
|
"internFld", "Alp Phi Frq LamT LamL",
|
|
"Bessel", "Phi Frq",
|
|
"internBsl", "Alp Phi Frq LamT LamL",
|
|
"abragam", "Sgm gam",
|
|
"Meissner", "Phi Energy Field DeadLayer Lambda",
|
|
"skewedGss", "Phi Frq Sgmm Sgmp"
|
|
);
|
|
|
|
#######################################################################
|
|
# Generate the full THEORY block
|
|
my $Full_T_Block = $EMPTY;
|
|
my $component = 0;
|
|
foreach my $FitType (@FitTypes) {
|
|
++$component;
|
|
# Add components
|
|
if ( $component > 1 ) {
|
|
$Full_T_Block = $Full_T_Block . "\n+\n";
|
|
}
|
|
|
|
# For each component there is a THEORY block starting with "asymmetry"
|
|
my $T_Block = "asymmetry " . $THEORY{'asymmetry'};
|
|
my $Parameters = $THEORY{'asymmetry'};
|
|
|
|
# Compose the THEORY block
|
|
# The duplicate names are changed for multiplied signals or just
|
|
# change names to match parameters list declared for the function
|
|
|
|
# Stretch exponential
|
|
if ( $FitType eq "Stretch" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
}
|
|
|
|
# Exponential
|
|
elsif ( $FitType eq "Exponential" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
}
|
|
|
|
# Gaussian
|
|
elsif ( $FitType eq "Gaussian" ) {
|
|
$T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
}
|
|
|
|
# Exponential with 0 relaxation
|
|
elsif ( $FitType eq "Background" ) {
|
|
|
|
# Do nothing
|
|
}
|
|
|
|
# Oscillationg exponential
|
|
elsif ( $FitType eq "ExponentialCos" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Oscillationg gaussian
|
|
elsif ( $FitType eq "GaussianCos" ) {
|
|
$T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Oscillationg stretch exponential
|
|
elsif ( $FitType eq "StretchCos" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Oscillationg Gaussian
|
|
elsif ( $FitType eq "GaussianCos" ) {
|
|
$T_Block = $T_Block . "\n" . "simpelGss " . $THEORY{'simpelGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
$T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} );
|
|
}
|
|
|
|
# Static Lorentzian KT
|
|
elsif ( $FitType eq "SLKT" ) {
|
|
$T_Block = $T_Block . "\n" . "statExpKT " . $THEORY{'statExpKT'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKT'} );
|
|
}
|
|
|
|
# Static Lorentzian KT LF
|
|
elsif ( $FitType eq "SLKTLF" ) {
|
|
$T_Block =
|
|
$T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} );
|
|
}
|
|
|
|
# Dynamic Lorentzian KT LF
|
|
elsif ( $FitType eq "LDKTLF" ) {
|
|
$T_Block = $T_Block . "\n" . "dynExpKTLF " . $THEORY{'dynExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'dynExpKTLF'} );
|
|
}
|
|
|
|
# Static Gaussian KT
|
|
elsif ( $FitType eq "SGKT" ) {
|
|
$T_Block = $T_Block . "\n" . "statGssKT " . $THEORY{'statGssKT'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKT'} );
|
|
}
|
|
|
|
# Static Gaussian KT LF
|
|
elsif ( $FitType eq "SGKTLF" ) {
|
|
$T_Block =
|
|
$T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} );
|
|
}
|
|
|
|
# Dynamic Gaussian KT LF
|
|
elsif ( $FitType eq "GDKTLF" ) {
|
|
$T_Block = $T_Block . "\n" . "dynGssKTLF " . $THEORY{'dynGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'dynGssKTLF'} );
|
|
}
|
|
|
|
# Now some more combined functions (multiplication).
|
|
|
|
# Lorentzian KT LF multiplied by exponential
|
|
elsif ( $FitType eq "LLFExp" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} );
|
|
}
|
|
|
|
# Lorentzian KT LF multiplied by stretched exponential
|
|
elsif ( $FitType eq "LLFSExp" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} );
|
|
}
|
|
|
|
# Gaussian KT LF multiplied by exponential
|
|
elsif ( $FitType eq "GLFExp" ) {
|
|
$T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} );
|
|
}
|
|
|
|
# Gaussian KT LF multiplied by stretched exponential
|
|
elsif ( $FitType eq "GLFSExp" ) {
|
|
$T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} );
|
|
$T_Block =
|
|
$T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} );
|
|
}
|
|
|
|
# Meissner state model
|
|
elsif ( $FitType eq "Meissner" ) {
|
|
$T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} );
|
|
$T_Block =
|
|
$T_Block . "\n"
|
|
. "userFcn libTFitPofB.so TLondon1DHS "
|
|
. $THEORY{'Meissner'};
|
|
$Parameters = join( $SPACE, $Parameters, $THEORY{'Meissner'} );
|
|
}
|
|
|
|
$Paramcomp[ $component - 1 ] = $Parameters;
|
|
$Full_T_Block = $Full_T_Block . $T_Block;
|
|
|
|
# Finished preparing the THEORY block
|
|
#######################################################################
|
|
}
|
|
return($Full_T_Block,\@Paramcomp);
|
|
} # End CreateTheory
|
|
|
|
########################
|
|
# ExtractParamBlk
|
|
########################
|
|
sub ExtractParamBlk {
|
|
# This subroutine takes the MSR file as input and extracts the parameters
|
|
# with the corresponding values, errors etc...
|
|
|
|
# Take the msr file as input array of lines
|
|
my @file=@_;
|
|
|
|
my $NFITPARAMETERS=0;
|
|
my $NTHEORY=0;
|
|
my $NRUN=0;
|
|
|
|
# Remove comment lines
|
|
@file = grep {!/^\#/} @file;
|
|
# Remove empty lines
|
|
@file = grep {/\S/} @file;
|
|
|
|
# Identify different blocks
|
|
my $i=0;
|
|
my $line ="";
|
|
foreach $line (@file)
|
|
{
|
|
if (grep {/FITPARAMETER/} $line) {$NFITPARAMETERS=$i;}
|
|
if (grep {/THEORY/} $line) { $NTHEORY=$i;}
|
|
if ((grep {/RUN/} $line) & $NRUN==0) { $NRUN=$i;}
|
|
$i++;
|
|
}
|
|
my @FPBlock=@file[$NFITPARAMETERS+1..$NTHEORY-1];
|
|
my @TBlock=@file[$NTHEORY+1..$NRUN-1];
|
|
|
|
# Split parameter's line to extract values and errors
|
|
foreach $line (@FPBlock) {
|
|
my @Param=split(/\s+/,$line);
|
|
}
|
|
|
|
return(\@FPBlock)
|
|
}
|
|
|
|
|
|
########################
|
|
# T0BgData
|
|
# Function return the defaul value of t0, Bg and Data bin
|
|
# input should be
|
|
# $Name is t0,Bg1,Bg2,Data1,Data2
|
|
# $Hist is the histogram number
|
|
# $BeamLine in the name of beamline
|
|
########################
|
|
sub T0BgData {
|
|
# Take this information as input arguments
|
|
(my $Name, my $Hist, my $BeamLine) = @_;
|
|
|
|
# These are the default values, ordered by beamline
|
|
# Comma at the beginning means take default t0 from file
|
|
# The order is pairs of "HistNumber","t0,Bg1,Bg2,Data1,Data2"
|
|
my %LEM=("1",",66000,66500,3419,63000",
|
|
"2",",66000,66500,3419,63000",
|
|
"3",",66000,66500,3419,63000",
|
|
"4",",66000,66500,3419,63000");
|
|
|
|
my %GPS=("1",",40,120,135,8000",
|
|
"2",",40,120,135,8000",
|
|
"3",",40,120,135,8000",
|
|
"4",",40,120,135,8000");
|
|
|
|
my %Dolly=("1",",50,250,297,8000",
|
|
"2",",50,250,297,8000",
|
|
"3",",50,250,297,8000",
|
|
"4",",50,250,297,8000");
|
|
|
|
my %RV=();
|
|
|
|
if ($BeamLine eq "LEM") {
|
|
my $HistParams=$LEM{$Hist};
|
|
($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams);
|
|
}
|
|
elsif ($BeamLine eq "Dolly") {
|
|
my $HistParams=$Dolly{$Hist};
|
|
($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams);
|
|
}
|
|
elsif ($BeamLine eq "GPS") {
|
|
my $HistParams=$GPS{$Hist};
|
|
($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams);
|
|
}
|
|
return $RV{$Name};
|
|
|
|
}
|
|
|
|
########################
|
|
# PrepParamTable
|
|
# Function return a Hash with a table of parameters for the fit
|
|
# input should be
|
|
# %All
|
|
########################
|
|
sub PrepParamTable {
|
|
# Take this information as input arguments
|
|
# "Smart" default value of the fit parameters.
|
|
my %Defaults = (
|
|
"Asy", "0.15", "dAsy", "0.01",
|
|
"Asy_min", "0", "Asy_max", "0",
|
|
"Alpha", "1.0", "dAlpha", "0.01",
|
|
"Alpha_min", "0", "Alpha_max", "0",
|
|
"N0", "300.0", "dN0", "0.01",
|
|
"N0_min", "0", "N0_max", "0",
|
|
"NBg", "30.0", "dNBg", "0.01",
|
|
"NBg_min", "0", "NBg_max", "0",
|
|
"Lam", "1.0", "dLam", "0.01",
|
|
"Lam_min", "0", "Lam_max", "0",
|
|
"Gam", "1.0", "dGam", "0.01",
|
|
"Gam_min", "0", "Gam_max", "0",
|
|
"Bet", "0.5", "dBet", "0.01",
|
|
"Bet_min", "0", "Bet_max", "0",
|
|
"Two", "2.0", "dTwo", "0.0",
|
|
"Two_min", "0", "Two_max", "0",
|
|
"Del", "0.1", "dDel", "0.01",
|
|
"Del_min", "0", "Del_max", "0",
|
|
"Sgm", "0.1", "dSgm", "0.01",
|
|
"Sgm_min", "0", "Sgm_max", "0",
|
|
"Aa", "0.1", "dAa", "0.01",
|
|
"Aa_min", "0", "Aa_max", "0",
|
|
"q", "0.1", "dq", "0.01",
|
|
"q_min", "0", "q_max", "0",
|
|
"Bg", "0.036", "dBg", "0.01",
|
|
"Bg_min", "0", "Bg_max", "0",
|
|
"bgrlx", "0.", "dbgrlx", "0.0",
|
|
"bgrlx_min", "0", "bgrlx_max", "0",
|
|
"Frq", "1.0", "dFrq", "1.",
|
|
"Frq_min", "0", "Frq_max", "0",
|
|
"Field", "100.0", "dField", "1.",
|
|
"Field_min", "0", "Field_max", "0",
|
|
"Energy", "14.1", "dEnergy", "0.",
|
|
"Energy_min", "0", "Energy_max", "0",
|
|
"DeadLayer", "10.", "dDeadLayer", "0.1",
|
|
"DeadLayer_min", "0", "DeadLayer_max", "0",
|
|
"Lambda", "128.1", "dLambda", "0.1",
|
|
"Lambda_min", "0", "Lambda_max", "0",
|
|
"Phi", "1.", "dPhi", "0.01",
|
|
"Phi_min", "0", "Phi_max", "0"
|
|
);
|
|
|
|
my $erradd = "d";
|
|
my $minadd = "_min";
|
|
my $maxadd = "_max";
|
|
|
|
# First assume nothing is shared
|
|
my $Shared = 0;
|
|
|
|
# Reset output Hash
|
|
%ParTable = ();
|
|
|
|
my %All = %{$_[0]};
|
|
my @RUNS = ();
|
|
if ($All{"RUNSType"}) {
|
|
@RUNS = split( /,/, $All{"RunFiles"} );
|
|
} else {
|
|
@RUNS = split( /,/, $All{"RunNumbers"} );
|
|
}
|
|
my @Hists = split( /,/, $All{"LRBF"} );
|
|
|
|
my @FitTypes =();
|
|
foreach my $FitType ($All{"FitType1"}, $All{"FitType2"}, $All{"FitType3"}) {
|
|
if ( $FitType ne "None" ) { push( @FitTypes, $FitType ); }
|
|
}
|
|
# Get theory block to determine the size of the table
|
|
my ($Full_T_Block,$Paramcomp_ref)= MSR::CreateTheory(@FitTypes);
|
|
# For now the line below does not work. Why?
|
|
# my $Paramcomp_ref=$All{"Paramcomp_ref"};
|
|
my @Paramcomp = @$Paramcomp_ref;
|
|
my $Full_T_Block= $All{"Full_T_Block"};
|
|
my $PCount =0;
|
|
my $iRun =0;
|
|
my $value =0;
|
|
my $error = 0;
|
|
my $minvalue = 0;
|
|
my $maxvalue = 0;
|
|
my $Component=1;
|
|
|
|
foreach my $RUN (@RUNS) {
|
|
$iRun++;
|
|
$Component=1;
|
|
if ($All{"FitAsyType"} eq "Asymmetry") {
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, "Alpha" );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
if ( $#FitTypes != 0 && ( $Param ne "Alpha" ) ){
|
|
$Param = join( "", $Param, "_", "$Component" );
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. If not take from defaults
|
|
$value = $All{"$Param"};
|
|
if ( $value ne "" ) {
|
|
$error = $All{"$erradd$Param"};
|
|
$minvalue = $All{"$Param$minadd"};
|
|
$maxvalue = $All{"$Param$maxadd"};
|
|
} else {
|
|
# I need this although it is already in the MSR.pm module, just for this table
|
|
# We can remove it from the MSR module later...
|
|
# Or keep in the MSR as function ??
|
|
$value = $Defaults{$Param_ORG};
|
|
$error = $Defaults{ join( "", $erradd, $Param_ORG ) };
|
|
$minvalue = $Defaults{ join("", $Param_ORG, $minadd ) };
|
|
$maxvalue = $Defaults{ join("", $Param_ORG, $maxadd ) };
|
|
}
|
|
$values=join(",",$Param,$value,$error,$minvalue,$maxvalue,$RUN);
|
|
$ParTable{$PCount}=$values;
|
|
$PCount++;
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
elsif ($All{"FitAsyType"} eq "SingleHist") {
|
|
# For a single histogram fit we basically need to repeat this for each hist
|
|
foreach my $Hist (@Hists) {
|
|
$Component=1;
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, ( "N0", "NBg" ) );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
$Param=$Param.$Hist;
|
|
if ( $#FitTypes != 0 && ( $Param_ORG ne "N0" && $Param_ORG ne "NBg" ) ){
|
|
$Param = join( "", $Param, "_", "$Component" );
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. If not take from defaults
|
|
$value = $All{"$Param"};
|
|
if ( $value ne "" ) {
|
|
$error = $All{"$erradd$Param"};
|
|
$minvalue = $All{"$Param$minadd"};
|
|
$maxvalue = $All{"$Param$maxadd"};
|
|
} else {
|
|
# I need this although it is already in the MSR.pm module, just for this table
|
|
# We can remove it from the MSR module later...
|
|
# Or keep in the MSR as function ??
|
|
$value = $Defaults{$Param_ORG};
|
|
$error = $Defaults{ join( "", $erradd, $Param_ORG ) };
|
|
$minvalue = $Defaults{ join("", $Param_ORG, $minadd ) };
|
|
$maxvalue = $Defaults{ join("", $Param_ORG, $maxadd ) };
|
|
}
|
|
$values=join(",",$Param,$value,$error,$minvalue,$maxvalue,$RUN);
|
|
$ParTable{$PCount}=$values;
|
|
$PCount++;
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
}
|
|
|
|
}
|
|
return %ParTable;
|
|
}
|
|
|
|
|
|
########################
|
|
# ExportParams
|
|
# Function return a tab separated table of parameters for the fit
|
|
# input should be
|
|
# %All
|
|
########################
|
|
sub ExportParams {
|
|
my $erradd = "d";
|
|
my $minadd = "_min";
|
|
my $maxadd = "_max";
|
|
|
|
# First assume nothing is shared
|
|
my $Shared = 0;
|
|
|
|
my $TABLE="";
|
|
my $HEADER="RUN";
|
|
|
|
my %All = %{$_[0]};
|
|
my @RUNS = ();
|
|
if ($All{"RUNSType"}) {
|
|
@RUNS = split( /,/, $All{"RunFiles"} );
|
|
} else {
|
|
@RUNS = split( /,/, $All{"RunNumbers"} );
|
|
}
|
|
my @Hists = split( /,/, $All{"LRBF"} );
|
|
|
|
my @FitTypes =();
|
|
foreach my $FitType ($All{"FitType1"}, $All{"FitType2"}, $All{"FitType3"}) {
|
|
if ( $FitType ne "None" ) { push( @FitTypes, $FitType ); }
|
|
}
|
|
# Get theory block to determine the size of the table
|
|
my ($Full_T_Block,$Paramcomp_ref)= MSR::CreateTheory(@FitTypes);
|
|
# For now the line below does not work. Why?
|
|
# my $Paramcomp_ref=$All{"Paramcomp_ref"};
|
|
my @Paramcomp = @$Paramcomp_ref;
|
|
my $Full_T_Block= $All{"Full_T_Block"};
|
|
|
|
# Extract parameter block form the MSR file
|
|
# my $FILENAME=$All{"FILENAME"};
|
|
# open (MSRF,q{<},"$FILENAME.msr" );
|
|
# my @lines = <MSRF>;
|
|
# close(IFILE);
|
|
# my $FPBlock_ref=MSR::ExtractParamBlk(@lines);
|
|
# my @FPBloc = @$FPBlock_ref;
|
|
|
|
# Then loop over expected parameters and extract their values and error bar
|
|
my $PCount =0;
|
|
my $iRun =0;
|
|
my $value =0;
|
|
my $error = 0;
|
|
my $minvalue = 0;
|
|
my $maxvalue = 0;
|
|
my $Component=1;
|
|
|
|
foreach my $RUN (@RUNS) {
|
|
my $line="$RUN";
|
|
$iRun++;
|
|
$Component=1;
|
|
if ($All{"FitAsyType"} eq "Asymmetry") {
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, "Alpha" );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
if ( $#FitTypes != 0 && ( $Param ne "Alpha" ) ){
|
|
$Param = join( "", $Param, "_", "$Component" );
|
|
}
|
|
# $All{"Header"} - 0/1 for with/without header
|
|
if ($All{"Header"} && $iRun == 1) {
|
|
$HEADER=join("\t",$HEADER,$Param,"$erradd$Param");
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. (should be)
|
|
$value = $All{"$Param"};
|
|
$error = $All{"$erradd$Param"};
|
|
|
|
$line=join("\t",$line,$value,$error);
|
|
$PCount++;
|
|
}
|
|
elsif ($Shared==1) {
|
|
# The parameter is shared, take the value from the first run
|
|
$Param=$Param."_1";
|
|
$value = $All{"$Param"};
|
|
$error = $All{"$erradd$Param"};
|
|
$line=join("\t",$line,$value,$error);
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
elsif ($All{"FitAsyType"} eq "SingleHist") {
|
|
# For a single histogram fit we basically need to repeat this for each hist
|
|
foreach my $Hist (@Hists) {
|
|
$Component=1;
|
|
foreach my $FitType (@FitTypes) {
|
|
my $Parameters=$Paramcomp[$Component-1];
|
|
my @Params = split( /\s+/, $Parameters );
|
|
if ( $Component == 1 ) {
|
|
unshift( @Params, ( "N0", "NBg" ) );
|
|
}
|
|
|
|
# This is the counter for parameters of this component
|
|
my $NP=1;
|
|
$Shared = 0;
|
|
# Change state/label of parameters
|
|
foreach my $Param (@Params) {
|
|
my $Param_ORG = $Param;
|
|
$Param=$Param.$Hist;
|
|
if ( $#FitTypes != 0 && ( $Param_ORG ne "N0" && $Param_ORG ne "NBg" ) ){
|
|
$Param = join( "", $Param, "_", "$Component" );
|
|
}
|
|
|
|
$Shared = $All{"Sh_$Param"};
|
|
if ( $Shared!=1 || $iRun == 1 ) {
|
|
# It there are multiple runs index the parameters accordingly
|
|
$Param=$Param."_".$iRun;
|
|
# Check if this parameter has been initialized befor. (should be)
|
|
$value = $All{"$Param"};
|
|
$error = $All{"$erradd$Param"};
|
|
$minvalue = $All{"$Param$minadd"};
|
|
$maxvalue = $All{"$Param$maxadd"};
|
|
|
|
$values=join("\t",$Param,$value,$error,$minvalue,$maxvalue,$RUN);
|
|
$ParTable{$PCount}=$values;
|
|
$PCount++;
|
|
}
|
|
$NP++;
|
|
}
|
|
$Component++;
|
|
}
|
|
}
|
|
}
|
|
$TABLE=$TABLE."$line\n"
|
|
}
|
|
if ($All{"Header"}) {
|
|
$TABLE=$HEADER."\n".$TABLE;
|
|
}
|
|
|
|
return $TABLE;
|
|
}
|
|
|
|
|
|
########################
|
|
# RUNFileNameAuto
|
|
# Function return the RUN_Line for a given RUN
|
|
# input should be
|
|
# $RUN is the run number
|
|
# $YEAR is the year
|
|
# $BeamLine in the name of beamline
|
|
########################
|
|
sub RUNFileNameAuto {
|
|
# Take this information as input arguments
|
|
(my $RUN, my $YEAR, my $BeamLine) = @_;
|
|
|
|
my $DATADIR = $DATADIRS{$BeamLine};
|
|
my $RUNtmp = $EMPTY;
|
|
if ( $RUN < 10 ) { $RUNtmp = "000" . $RUN; }
|
|
elsif ( $RUN < 100 ) { $RUNtmp = "00" . $RUN; }
|
|
elsif ( $RUN < 1000 ) { $RUNtmp = "0" . $RUN; }
|
|
else { $RUNtmp=$RUN; }
|
|
|
|
# Get current year
|
|
my ( $sec, $min, $hour, $mday, $mon, $year, $wday, $yday, $isdst ) =
|
|
localtime( time() );
|
|
my $current_year = $year + 1900;
|
|
|
|
if ( $BeamLine eq "LEM" ) {
|
|
$RUN_File_Name = "lem" . substr( $YEAR, 2 ) . "_his_" . $RUNtmp;
|
|
$RUNFILE = "$DATADIR/$YEAR/$RUN_File_Name";
|
|
}
|
|
elsif ( $BeamLine eq "GPS" ) {
|
|
$RUN_File_Name = "deltat_pta_gps_" . $RUNtmp;
|
|
if ( $YEAR == $current_year ) {
|
|
$RUNFILE = "$DATADIR/$RUN_File_Name";
|
|
}
|
|
else {
|
|
$RUNFILE = "$DATADIR/d$YEAR/pta/$RUN_File_Name";
|
|
}
|
|
}
|
|
elsif ( $BeamLine eq "LTF" ) {
|
|
$RUN_File_Name = "deltat_pta_ltf_" . $RUNtmp;
|
|
if ( $YEAR == $current_year ) {
|
|
$RUNFILE = "$DATADIR/$RUN_File_Name";
|
|
}
|
|
else {
|
|
$RUNFILE = "$DATADIR/d$YEAR/pta/$RUN_File_Name";
|
|
}
|
|
}
|
|
elsif ( $BeamLine eq "Dolly" ) {
|
|
$RUN_File_Name = "deltat_pta_dolly_" . $RUNtmp;
|
|
if ( $YEAR == $current_year ) {
|
|
$RUNFILE = "$DATADIR/$RUN_File_Name";
|
|
}
|
|
else {
|
|
$RUNFILE = "$DATADIR/d$YEAR/pta/$RUN_File_Name";
|
|
}
|
|
}
|
|
elsif ( $BeamLine eq "GPD" ) {
|
|
$RUN_File_Name = "deltat_pta_gpd_" . $RUNtmp;
|
|
if ( $YEAR == $current_year ) {
|
|
$RUNFILE = "$DATADIR/$RUN_File_Name";
|
|
}
|
|
else {
|
|
$RUNFILE = "$DATADIR/d$YEAR/pta/$RUN_File_Name";
|
|
}
|
|
}
|
|
my $RUN_Line = join( $SPACE,
|
|
"RUN", $RUNFILE, $BeamLines{$BeamLine}, "PSI",
|
|
$Def_Format{$BeamLine} );
|
|
|
|
return $RUN_Line;
|
|
}
|
|
|
|
########################
|
|
# RUNFileNameMan
|
|
# Function return the RUN_Line for a given RUN
|
|
# input should be
|
|
# $RUN is the run number
|
|
# $YEAR is the year
|
|
# $BeamLine in the name of beamline
|
|
########################
|
|
sub RUNFileNameMan {
|
|
my %EXTs = ("root","ROOT-NPP",
|
|
"bin","PSI-BIN",
|
|
"msr","MUD");
|
|
|
|
# Take this information as input arguments
|
|
(my $RUN) = @_;
|
|
my @tmp = split(/\./,$RUN);
|
|
my $EXT = @tmp[$#tmp];
|
|
|
|
$RUN =~ s/\.[^.]+$//;
|
|
|
|
my $RUN_Line = join( $SPACE,
|
|
"RUN", $RUN, "MUE4", "PSI",$EXTs{$EXT});
|
|
|
|
return $RUN_Line;
|
|
}
|
|
|
|
1;
|