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<a href="musrfit_8cpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="comment">/***************************************************************************</span></div>
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<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span><span class="comment"></span> </div>
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<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="comment"> musrfit.cpp</span></div>
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<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="comment"></span> </div>
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<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="comment"> Author: Andreas Suter</span></div>
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<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="comment"> e-mail: andreas.suter@psi.ch</span></div>
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<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span><span class="comment"></span> </div>
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<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="comment">***************************************************************************/</span></div>
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<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span> </div>
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<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"> 10</span><span class="comment">/***************************************************************************</span></div>
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<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="comment"> * Copyright (C) 2007-2025 by Andreas Suter *</span></div>
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<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span><span class="comment"> * andreas.suter@psi.ch *</span></div>
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<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"> 13</span><span class="comment"> * *</span></div>
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<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span><span class="comment"> * This program is free software; you can redistribute it and/or modify *</span></div>
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<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"> 15</span><span class="comment"> * it under the terms of the GNU General Public License as published by *</span></div>
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<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"> 16</span><span class="comment"> * the Free Software Foundation; either version 2 of the License, or *</span></div>
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<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"> 17</span><span class="comment"> * (at your option) any later version. *</span></div>
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<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"> 18</span><span class="comment"> * *</span></div>
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<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"> 19</span><span class="comment"> * This program is distributed in the hope that it will be useful, *</span></div>
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<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"> 20</span><span class="comment"> * but WITHOUT ANY WARRANTY; without even the implied warranty of *</span></div>
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<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"> 21</span><span class="comment"> * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *</span></div>
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<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span><span class="comment"> * GNU General Public License for more details. *</span></div>
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<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span><span class="comment"> * *</span></div>
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<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span><span class="comment"> * You should have received a copy of the GNU General Public License *</span></div>
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<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"> 25</span><span class="comment"> * along with this program; if not, write to the *</span></div>
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<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"> 26</span><span class="comment"> * Free Software Foundation, Inc., *</span></div>
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<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"> 27</span><span class="comment"> * 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *</span></div>
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<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span><span class="comment"> ***************************************************************************/</span></div>
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<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> </div>
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<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span><span class="preprocessor">#ifdef HAVE_CONFIG_H</span></div>
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<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"> 31</span><span class="preprocessor">#include "config.h"</span></div>
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<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"> 32</span><span class="preprocessor">#endif</span></div>
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<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"> 33</span> </div>
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<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"> 34</span><span class="preprocessor">#ifdef HAVE_GOMP</span></div>
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<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"> 35</span><span class="preprocessor">#include <omp.h></span></div>
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<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"> 36</span><span class="preprocessor">#endif</span></div>
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<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"> 37</span> </div>
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<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"> 38</span><span class="preprocessor">#include <cstdio></span></div>
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<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"> 39</span><span class="preprocessor">#include <cstdlib></span></div>
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<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"> 40</span><span class="comment">//#include <string.h></span></div>
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<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"> 41</span><span class="preprocessor">#include <sys/types.h></span></div>
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<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"> 42</span><span class="preprocessor">#include <unistd.h></span></div>
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<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"> 43</span><span class="preprocessor">#include <signal.h></span></div>
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<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"> 44</span> </div>
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<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"> 45</span><span class="preprocessor">#include <iostream></span></div>
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<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"> 46</span><span class="preprocessor">#include <fstream></span></div>
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<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"> 47</span><span class="preprocessor">#include <memory></span></div>
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<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> </div>
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<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span><span class="preprocessor">#include <TSAXParser.h></span></div>
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<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span><span class="preprocessor">#include <TString.h></span></div>
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<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span><span class="preprocessor">#include <TFile.h></span></div>
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<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"> 52</span><span class="preprocessor">#include <TCanvas.h></span></div>
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<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span><span class="preprocessor">#include <TH1.h></span></div>
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<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span><span class="preprocessor">#include <TSystem.h></span></div>
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<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span><span class="preprocessor">#include <TSystemFile.h></span></div>
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<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span><span class="preprocessor">#include <TThread.h></span></div>
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<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"> 57</span> </div>
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<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span><span class="preprocessor">#ifdef HAVE_GIT_REV_H</span></div>
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<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"> 59</span><span class="preprocessor">#include "git-revision.h"</span></div>
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<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span><span class="preprocessor">#endif</span></div>
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<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> </div>
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<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span><span class="preprocessor">#include "<a class="code" href="PMusr_8h.html">PMusr.h</a>"</span></div>
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<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"> 63</span><span class="preprocessor">#include "<a class="code" href="PStartupHandler_8h.html">PStartupHandler.h</a>"</span></div>
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<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span><span class="preprocessor">#include "<a class="code" href="PMsrHandler_8h.html">PMsrHandler.h</a>"</span></div>
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<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span><span class="preprocessor">#include "<a class="code" href="PRunDataHandler_8h.html">PRunDataHandler.h</a>"</span></div>
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<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span><span class="preprocessor">#include "<a class="code" href="PRunListCollection_8h.html">PRunListCollection.h</a>"</span></div>
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<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span><span class="preprocessor">#include "<a class="code" href="PFitter_8h.html">PFitter.h</a>"</span></div>
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<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> </div>
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<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span><span class="comment">//--------------------------------------------------------------------------</span></div>
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<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> </div>
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<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#a493b57f443cc38b3d3df9c1e584d9d82"> 71</a></span><span class="keyword">static</span> <span class="keywordtype">int</span> <a class="code hl_variable" href="musrfit_8cpp.html#a493b57f443cc38b3d3df9c1e584d9d82">timeout</a> = 3600; <span class="comment">// given in (sec)</span></div>
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<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"> 72</span> </div>
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<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span><span class="comment">//--------------------------------------------------------------------------</span></div>
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<div class="foldopen" id="foldopen00078" data-start="{" data-end="}">
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<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#a82d0f397af9d67283cf3109a837e8361"> 78</a></span><span class="keywordtype">void</span>* <a class="code hl_function" href="musrfit_8cpp.html#a82d0f397af9d67283cf3109a837e8361">musrfit_timeout</a>(<span class="keywordtype">void</span> *args)</div>
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<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"> 79</span>{</div>
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<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> pid_t *pid = (pid_t*)(args);</div>
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<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> </div>
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<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> sleep(<a class="code hl_variable" href="musrfit_8cpp.html#a493b57f443cc38b3d3df9c1e584d9d82">timeout</a>);</div>
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<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> </div>
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<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> std::cerr << std::endl << <span class="stringliteral">">> **FATAL ERROR** musrfit_timeout for task pid="</span> << *pid << <span class="stringliteral">" called! Will kill it!"</span> << std::endl << std::endl;</div>
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<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"> 85</span> </div>
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<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> kill(*pid, SIGKILL);</div>
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<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> </div>
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<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> <span class="keywordflow">return</span> (<span class="keywordtype">void</span>*)<span class="keyword">nullptr</span>;</div>
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<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span>}</div>
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</div>
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<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> </div>
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<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"> 91</span><span class="comment">//--------------------------------------------------------------------------</span></div>
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<div class="foldopen" id="foldopen00095" data-start="{" data-end="}">
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<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#ada0e5255e2e1889947bab9469353374c"> 95</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="musrfit_8cpp.html#ada0e5255e2e1889947bab9469353374c">musrfit_syntax</a>()</div>
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<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span>{</div>
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<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> std::cout << std::endl << <span class="stringliteral">"usage: musrfit [<msr-file> [-k, --keep-mn2-ouput] [-c, --chisq-only] [-t, --title-from-data-file]"</span>;</div>
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<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> std::cout << std::endl << <span class="stringliteral">" [-e, --estimateN0] [-p, --per-run-block-chisq]"</span>;</div>
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<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> std::cout << std::endl << <span class="stringliteral">" [--dump <type>] [--timeout <timeout_tag>] |"</span>;</div>
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<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> std::cout << std::endl << <span class="stringliteral">" -n, --no-of-cores-avail | -u, --use-no-of-threads <number> |"</span>;</div>
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<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> std::cout << std::endl << <span class="stringliteral">" --nexus-support | --show-dynamic-path | --version | --help"</span>;</div>
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<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> std::cout << std::endl << <span class="stringliteral">" <msr-file>: msr input file"</span>;</div>
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<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> std::cout << std::endl << <span class="stringliteral">" 'musrfit <msr-file>' will execute musrfit"</span>;</div>
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<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> std::cout << std::endl << <span class="stringliteral">" 'musrfit' or 'musrfit --help' will show this help"</span>;</div>
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<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> std::cout << std::endl << <span class="stringliteral">" 'musrfit --version' will print the musrfit version"</span>;</div>
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<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> std::cout << std::endl << <span class="stringliteral">" 'musrfit --nexus-support' will print if NeXus support is available."</span>;</div>
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<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> std::cout << std::endl << <span class="stringliteral">" 'musrfit --show-dynamic-path' will print the internal dynamic library search paths."</span>;</div>
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<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> std::cout << std::endl << <span class="stringliteral">" -k, --keep-mn2-output: will rename the files MINUIT2.OUTPUT and "</span>;</div>
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<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> std::cout << std::endl << <span class="stringliteral">" MINUIT2.root to <msr-file>-mn2.output and <msr-file>-mn2.root,"</span>;</div>
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<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> std::cout << std::endl << <span class="stringliteral">" respectively,"</span>;</div>
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<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> std::cout << std::endl << <span class="stringliteral">" e.g. <msr-file> = 147.msr -> 147-mn2.output, 147-mn2.root"</span>;</div>
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<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> std::cout << std::endl << <span class="stringliteral">" -c, --chisq-only: instead of fitting the data, chisq is just calculated"</span>;</div>
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<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> std::cout << std::endl << <span class="stringliteral">" once and the result is set to the stdout. This feature is useful"</span>;</div>
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<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span> std::cout << std::endl << <span class="stringliteral">" to adjust initial parameters."</span>;</div>
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<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"> 115</span> std::cout << std::endl << <span class="stringliteral">" -t, --title-from-data-file: will replace the <msr-file> run title by the"</span>;</div>
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|
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> std::cout << std::endl << <span class="stringliteral">" run title of the FIRST run of the <msr-file> run block, if a run title"</span>;</div>
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<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> std::cout << std::endl << <span class="stringliteral">" is present in the data file."</span>;</div>
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<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> std::cout << std::endl << <span class="stringliteral">" -e, --estimateN0: estimate N0 for single histogram fits."</span>;</div>
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<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> std::cout << std::endl << <span class="stringliteral">" -p, --per-run-block-chisq: will write per run block chisq to the msr-file."</span>;</div>
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<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> std::cout << std::endl << <span class="stringliteral">" -n, --no-of-cores-avail: print out how many cores are available (only vaild for OpenMP)"</span>;</div>
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<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> std::cout << std::endl << <span class="stringliteral">" -u, --use-no-of-threads <number>:"</span>;</div>
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<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> std::cout << std::endl << <span class="stringliteral">" <number>: number of threads to be used (OpenMP). Needs to be <= max. number of cores."</span>;</div>
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<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> std::cout << std::endl << <span class="stringliteral">" If OpenMP is enable, the maximal number of cores is used, if it is not limited by this option."</span>;</div>
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<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> std::cout << std::endl << <span class="stringliteral">" -r, --reset: reset startup musrfit_startup.xml, i.e. rewrite a default, and quit."</span>;</div>
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<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> std::cout << std::endl << <span class="stringliteral">" The order of which musrfit_startup.xml is reset is:"</span>;</div>
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<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> std::cout << std::endl << <span class="stringliteral">" (i) if present in the current dir."</span>;</div>
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<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> std::cout << std::endl << <span class="stringliteral">" (ii) if present under $HOME/.musrfit/"</span>;</div>
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<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> std::cout << std::endl << <span class="stringliteral">" (iii) if present under $MUSRFITPATH/"</span>;</div>
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<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> std::cout << std::endl << <span class="stringliteral">" (iv) if present under $ROOTSYS/"</span>;</div>
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<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> std::cout << std::endl << <span class="stringliteral">" -y, --yaml: write fit results (MINUIT2.OUTPUT) into a yaml-file. Output <msr-file>.yaml"</span>;</div>
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<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> std::cout << std::endl << <span class="stringliteral">" --dump <type> is writing a data file with the fit data and the theory"</span>;</div>
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<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> std::cout << std::endl << <span class="stringliteral">" <type> can be 'ascii', 'root'"</span>;</div>
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<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> std::cout << std::endl << <span class="stringliteral">" --timeout <timeout_tag>: overwrites to predefined timeout of "</span> << <a class="code hl_variable" href="musrfit_8cpp.html#a493b57f443cc38b3d3df9c1e584d9d82">timeout</a> << <span class="stringliteral">" (sec)."</span>;</div>
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<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> std::cout << std::endl << <span class="stringliteral">" <timeout_tag> <= 0 means timeout facility is not enabled. <timeout_tag> = nn"</span>;</div>
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<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> std::cout << std::endl << <span class="stringliteral">" will set the timeout to nn (sec)."</span>;</div>
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<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> std::cout << std::endl;</div>
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<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> std::cout << std::endl << <span class="stringliteral">" At the end of a fit, musrfit writes the fit results into an <mlog-file> and"</span>;</div>
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<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> std::cout << std::endl << <span class="stringliteral">" swaps them, i.e. in the <msr-file> you will find the fit results and in the"</span>;</div>
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<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> std::cout << std::endl << <span class="stringliteral">" <mlog-file> your initial guess values."</span>;</div>
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<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> std::cout << std::endl << std::endl;</div>
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<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span>}</div>
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</div>
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<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> </div>
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<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span><span class="comment">//--------------------------------------------------------------------------</span></div>
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<div class="foldopen" id="foldopen00151" data-start="{" data-end="}">
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<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b"> 151</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a>(TString fln, <a class="code hl_class" href="classPRunData.html">PRunData</a> *data, <span class="keywordtype">int</span> runCounter)</div>
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<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span>{</div>
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<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> <span class="comment">// generate dump file name</span></div>
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<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> TString count(<span class="stringliteral">"_"</span>);</div>
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<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> count += runCounter;</div>
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<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> Ssiz_t index = fln.Last(<span class="charliteral">'.'</span>);</div>
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<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span> fln.Insert(index, count);</div>
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<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> </div>
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<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"> 159</span> std::ofstream f;</div>
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<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> </div>
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<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> <span class="comment">// open dump-file</span></div>
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<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> f.open(fln.Data(), std::iostream::out);</div>
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<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> <span class="keywordflow">if</span> (!f.is_open()) {</div>
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<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> std::cout << std::endl << <span class="stringliteral">"Couldn't open dump ("</span> << fln.Data() << <span class="stringliteral">") file for writting, sorry ..."</span>;</div>
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<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> std::cout << std::endl;</div>
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<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> <span class="keywordflow">return</span>;</div>
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<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> }</div>
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<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> </div>
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<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> <span class="comment">// dump data</span></div>
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<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> f << <span class="stringliteral">"% number of data values = "</span> << data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->size() << std::endl;</div>
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<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> f << <span class="stringliteral">"% time (us), value, error, theory"</span> << std::endl;</div>
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<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> <span class="keywordtype">double</span> time;</div>
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<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->size(); i++) {</div>
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<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> time = data-><a class="code hl_function" href="classPRunData.html#a9c6d1dd9f6e248c9f0b2411d0d2a18bd">GetDataTimeStart</a>() + (double)i*data-><a class="code hl_function" href="classPRunData.html#a525f9ef83e2e263bb05adb70a16f89d9">GetDataTimeStep</a>();</div>
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<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> f << time << <span class="stringliteral">", "</span> << data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->at(i) << <span class="stringliteral">", "</span> << data-><a class="code hl_function" href="classPRunData.html#a821c4360542e0b6a0952e26cd70ef6ad">GetError</a>()->at(i) << <span class="stringliteral">", "</span> << data-><a class="code hl_function" href="classPRunData.html#a449a379e03e07d54112a30bef8f3fd6c">GetTheory</a>()->at(i) << std::endl;</div>
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<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span> }</div>
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<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> </div>
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<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"> 178</span> <span class="comment">// close file</span></div>
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<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> f.close();</div>
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<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span>}</div>
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</div>
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<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> </div>
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<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span><span class="comment">//--------------------------------------------------------------------------</span></div>
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<div class="foldopen" id="foldopen00191" data-start="{" data-end="}">
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<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#ada536421802fb257a884611528e58f56"> 191</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="musrfit_8cpp.html#ada536421802fb257a884611528e58f56">musrfit_dump_ascii</a>(<span class="keywordtype">char</span> *fileName, <a class="code hl_class" href="classPRunListCollection.html">PRunListCollection</a> *runList)</div>
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<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span>{</div>
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<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> TString fln(fileName);</div>
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<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> fln.ReplaceAll(<span class="stringliteral">".msr"</span>, <span class="stringliteral">".dat"</span>);</div>
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<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> </div>
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<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> <span class="comment">// go through the run list, get the data and dump it in a file</span></div>
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<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> </div>
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<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> <span class="keywordtype">int</span> runCounter = 0;</div>
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<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> <a class="code hl_class" href="classPRunData.html">PRunData</a> *data;</div>
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<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> </div>
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<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> <span class="comment">// single histos</span></div>
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<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a1921131046c81cec12a53e1205566953">GetNoOfSingleHisto</a>();</div>
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<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> <span class="keywordflow">if</span> (size > 0) {</div>
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<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a111ba4d6cd8d5c61739f7b9eaeede819">GetSingleHisto</a>(i);</div>
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<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> <span class="comment">// dump data</span></div>
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<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> <a class="code hl_function" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a>(fln, data, runCounter);</div>
|
|
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> runCounter++;</div>
|
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<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> }</div>
|
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<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> }</div>
|
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<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> }</div>
|
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<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> </div>
|
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<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span> <span class="comment">// single histos</span></div>
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<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#aa10aaca772367fff8a34b9c4d5ef1217">GetNoOfSingleHistoRRF</a>();</div>
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<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"> 216</span> <span class="keywordflow">if</span> (size > 0) {</div>
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<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a2bccecd0186b6e7f7c3975dfec5386b5">GetSingleHistoRRF</a>(i);</div>
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|
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> <span class="comment">// dump data</span></div>
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<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> <a class="code hl_function" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a>(fln, data, runCounter);</div>
|
|
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> runCounter++;</div>
|
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<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> }</div>
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<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> }</div>
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<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span> }</div>
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<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> </div>
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<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"> 227</span> <span class="comment">// asymmetry</span></div>
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|
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a85460ca0ee8a83ec4df01c27b77d8bd5">GetNoOfAsymmetry</a>();</div>
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<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> <span class="keywordflow">if</span> (size > 0) {</div>
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<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a7643b1f65b94ec022a47e5294a39009b">GetAsymmetry</a>(i);</div>
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<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> <span class="keywordflow">if</span> (data) {</div>
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<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> <span class="comment">// dump data</span></div>
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<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> <a class="code hl_function" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a>(fln, data, runCounter);</div>
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<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> runCounter++;</div>
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<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> }</div>
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<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> }</div>
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<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> }</div>
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<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> </div>
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<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> <span class="comment">// asymmetry RRF</span></div>
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<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a1d961b4efae4d1016c13abb66750ca99">GetNoOfAsymmetryRRF</a>();</div>
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<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> <span class="keywordflow">if</span> (size > 0) {</div>
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<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#af0efb082b97defd1a07e7e63c75823cc">GetAsymmetryRRF</a>(i);</div>
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<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> <span class="keywordflow">if</span> (data) {</div>
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<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> <span class="comment">// dump data</span></div>
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<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> <a class="code hl_function" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a>(fln, data, runCounter);</div>
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<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> runCounter++;</div>
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<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span> }</div>
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<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> }</div>
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<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"> 251</span> }</div>
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<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> </div>
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<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="comment">// muMinus</span></div>
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<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a143c734e883f4010f7546c1c9369d174">GetNoOfMuMinus</a>();</div>
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<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> <span class="keywordflow">if</span> (size > 0) {</div>
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<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#ad629977d3d291ea2b30260d143211172">GetMuMinus</a>(i);</div>
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<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> <span class="keywordflow">if</span> (data) {</div>
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<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> <span class="comment">// dump data</span></div>
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<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <a class="code hl_function" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a>(fln, data, runCounter);</div>
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<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> runCounter++;</div>
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<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> }</div>
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<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> }</div>
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<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> }</div>
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<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> </div>
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<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span> <span class="comment">// nonMusr</span></div>
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<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a811c852a4fb6492a8070743a1181323a">GetNoOfNonMusr</a>();</div>
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<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"> 268</span> <span class="keywordflow">if</span> (size > 0) {</div>
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<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a357670d57e6ddd1dc575a9e2a3bb321a">GetNonMusr</a>(i);</div>
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<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> <span class="keywordflow">if</span> (data) {</div>
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<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> <span class="comment">// dump data</span></div>
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<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <a class="code hl_function" href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a>(fln, data, runCounter);</div>
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<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> runCounter++;</div>
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<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> }</div>
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<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> }</div>
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<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> }</div>
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<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span>}</div>
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</div>
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<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> </div>
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<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span><span class="comment">//--------------------------------------------------------------------------</span></div>
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<div class="foldopen" id="foldopen00289" data-start="{" data-end="}">
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<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd"> 289</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a>(TFile &f, TString fln, <a class="code hl_class" href="classPRunData.html">PRunData</a> *data, <span class="keywordtype">int</span> runCounter)</div>
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<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span>{</div>
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<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> <span class="keywordtype">char</span> name[128];</div>
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<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> </div>
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<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> TString title = fln.Copy();</div>
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<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"> 294</span> snprintf(name, <span class="keyword">sizeof</span>(name), <span class="stringliteral">"_%d"</span>, runCounter);</div>
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<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> title.ReplaceAll(<span class="stringliteral">".root"</span>, name);</div>
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<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> </div>
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<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> snprintf(name, <span class="keyword">sizeof</span>(name),<span class="stringliteral">"c%d"</span>, runCounter);</div>
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<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> </div>
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<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> std::unique_ptr<TCanvas> c = std::make_unique<TCanvas>(name, title.Data(), 10, 10, 800, 600);</div>
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<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> </div>
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<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> <span class="comment">// create histos</span></div>
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<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> Double_t diff = data-><a class="code hl_function" href="classPRunData.html#a525f9ef83e2e263bb05adb70a16f89d9">GetDataTimeStep</a>();</div>
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<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"> 303</span> Double_t start = -diff/2.0;</div>
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<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> Double_t end = data-><a class="code hl_function" href="classPRunData.html#a525f9ef83e2e263bb05adb70a16f89d9">GetDataTimeStep</a>()*data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->size();</div>
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<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span> std::unique_ptr<TH1F> hdata = std::make_unique<TH1F>(<span class="stringliteral">"hdata"</span>, <span class="stringliteral">"run data"</span>, data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->size(), start, end);</div>
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<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> std::unique_ptr<TH1F> htheo = std::make_unique<TH1F>(<span class="stringliteral">"htheo"</span>, <span class="stringliteral">"run theory"</span>, data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->size(), start, end);</div>
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<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span> </div>
|
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<div class="line"><a id="l00308" name="l00308"></a><span class="lineno"> 308</span> <span class="comment">// fill data</span></div>
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<div class="line"><a id="l00309" name="l00309"></a><span class="lineno"> 309</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->size(); i++) {</div>
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<div class="line"><a id="l00310" name="l00310"></a><span class="lineno"> 310</span> hdata->SetBinContent(i+1, data-><a class="code hl_function" href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">GetValue</a>()->at(i));</div>
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<div class="line"><a id="l00311" name="l00311"></a><span class="lineno"> 311</span> hdata->SetBinError(i+1, data-><a class="code hl_function" href="classPRunData.html#a821c4360542e0b6a0952e26cd70ef6ad">GetError</a>()->at(i));</div>
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<div class="line"><a id="l00312" name="l00312"></a><span class="lineno"> 312</span> htheo->SetBinContent(i+1, data-><a class="code hl_function" href="classPRunData.html#a449a379e03e07d54112a30bef8f3fd6c">GetTheory</a>()->at(i));</div>
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<div class="line"><a id="l00313" name="l00313"></a><span class="lineno"> 313</span> }</div>
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<div class="line"><a id="l00314" name="l00314"></a><span class="lineno"> 314</span> </div>
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<div class="line"><a id="l00315" name="l00315"></a><span class="lineno"> 315</span> hdata->SetMarkerStyle(20);</div>
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<div class="line"><a id="l00316" name="l00316"></a><span class="lineno"> 316</span> hdata->Draw(<span class="stringliteral">"*H HIST E1"</span>);</div>
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<div class="line"><a id="l00317" name="l00317"></a><span class="lineno"> 317</span> </div>
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<div class="line"><a id="l00318" name="l00318"></a><span class="lineno"> 318</span> htheo->SetLineColor(2);</div>
|
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<div class="line"><a id="l00319" name="l00319"></a><span class="lineno"> 319</span> htheo->SetLineWidth(3);</div>
|
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<div class="line"><a id="l00320" name="l00320"></a><span class="lineno"> 320</span> htheo->Draw(<span class="stringliteral">"C SAME"</span>);</div>
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<div class="line"><a id="l00321" name="l00321"></a><span class="lineno"> 321</span> </div>
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<div class="line"><a id="l00322" name="l00322"></a><span class="lineno"> 322</span> f.WriteTObject(c.get());</div>
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<div class="line"><a id="l00323" name="l00323"></a><span class="lineno"> 323</span>}</div>
|
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</div>
|
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<div class="line"><a id="l00324" name="l00324"></a><span class="lineno"> 324</span> </div>
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<div class="line"><a id="l00325" name="l00325"></a><span class="lineno"> 325</span><span class="comment">//--------------------------------------------------------------------------</span></div>
|
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<div class="foldopen" id="foldopen00334" data-start="{" data-end="}">
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<div class="line"><a id="l00334" name="l00334"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#a8ff7d1dfc98147cec7566b654e9e962b"> 334</a></span><span class="keywordtype">void</span> <a class="code hl_function" href="musrfit_8cpp.html#a8ff7d1dfc98147cec7566b654e9e962b">musrfit_dump_root</a>(<span class="keywordtype">char</span> *fileName, <a class="code hl_class" href="classPRunListCollection.html">PRunListCollection</a> *runList)</div>
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<div class="line"><a id="l00335" name="l00335"></a><span class="lineno"> 335</span>{</div>
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<div class="line"><a id="l00336" name="l00336"></a><span class="lineno"> 336</span> TString fln(fileName);</div>
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<div class="line"><a id="l00337" name="l00337"></a><span class="lineno"> 337</span> fln.ReplaceAll(<span class="stringliteral">".msr"</span>, <span class="stringliteral">".root"</span>);</div>
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<div class="line"><a id="l00338" name="l00338"></a><span class="lineno"> 338</span> </div>
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<div class="line"><a id="l00339" name="l00339"></a><span class="lineno"> 339</span> TFile f(fln.Data(), <span class="stringliteral">"recreate"</span>);</div>
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<div class="line"><a id="l00340" name="l00340"></a><span class="lineno"> 340</span> </div>
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<div class="line"><a id="l00341" name="l00341"></a><span class="lineno"> 341</span> <span class="comment">// go through the run list, get the data and dump it in a file</span></div>
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<div class="line"><a id="l00342" name="l00342"></a><span class="lineno"> 342</span> </div>
|
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<div class="line"><a id="l00343" name="l00343"></a><span class="lineno"> 343</span> <span class="keywordtype">int</span> runCounter = 0;</div>
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<div class="line"><a id="l00344" name="l00344"></a><span class="lineno"> 344</span> <a class="code hl_class" href="classPRunData.html">PRunData</a> *data;</div>
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<div class="line"><a id="l00345" name="l00345"></a><span class="lineno"> 345</span> </div>
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<div class="line"><a id="l00346" name="l00346"></a><span class="lineno"> 346</span> <span class="comment">// single histos</span></div>
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<div class="line"><a id="l00347" name="l00347"></a><span class="lineno"> 347</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a1921131046c81cec12a53e1205566953">GetNoOfSingleHisto</a>();</div>
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<div class="line"><a id="l00348" name="l00348"></a><span class="lineno"> 348</span> <span class="keywordflow">if</span> (size > 0) {</div>
|
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<div class="line"><a id="l00349" name="l00349"></a><span class="lineno"> 349</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00350" name="l00350"></a><span class="lineno"> 350</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a111ba4d6cd8d5c61739f7b9eaeede819">GetSingleHisto</a>(i);</div>
|
|
<div class="line"><a id="l00351" name="l00351"></a><span class="lineno"> 351</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00352" name="l00352"></a><span class="lineno"> 352</span> <span class="comment">// dump data</span></div>
|
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<div class="line"><a id="l00353" name="l00353"></a><span class="lineno"> 353</span> <a class="code hl_function" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a>(f, fln, data, runCounter);</div>
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<div class="line"><a id="l00354" name="l00354"></a><span class="lineno"> 354</span> runCounter++;</div>
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<div class="line"><a id="l00355" name="l00355"></a><span class="lineno"> 355</span> }</div>
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<div class="line"><a id="l00356" name="l00356"></a><span class="lineno"> 356</span> }</div>
|
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<div class="line"><a id="l00357" name="l00357"></a><span class="lineno"> 357</span> }</div>
|
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<div class="line"><a id="l00358" name="l00358"></a><span class="lineno"> 358</span> </div>
|
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<div class="line"><a id="l00359" name="l00359"></a><span class="lineno"> 359</span> <span class="comment">// single histo RRF</span></div>
|
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<div class="line"><a id="l00360" name="l00360"></a><span class="lineno"> 360</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#aa10aaca772367fff8a34b9c4d5ef1217">GetNoOfSingleHistoRRF</a>();</div>
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|
<div class="line"><a id="l00361" name="l00361"></a><span class="lineno"> 361</span> <span class="keywordflow">if</span> (size > 0) {</div>
|
|
<div class="line"><a id="l00362" name="l00362"></a><span class="lineno"> 362</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
|
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<div class="line"><a id="l00363" name="l00363"></a><span class="lineno"> 363</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a2bccecd0186b6e7f7c3975dfec5386b5">GetSingleHistoRRF</a>(i);</div>
|
|
<div class="line"><a id="l00364" name="l00364"></a><span class="lineno"> 364</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00365" name="l00365"></a><span class="lineno"> 365</span> <span class="comment">// dump data</span></div>
|
|
<div class="line"><a id="l00366" name="l00366"></a><span class="lineno"> 366</span> <a class="code hl_function" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a>(f, fln, data, runCounter);</div>
|
|
<div class="line"><a id="l00367" name="l00367"></a><span class="lineno"> 367</span> runCounter++;</div>
|
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<div class="line"><a id="l00368" name="l00368"></a><span class="lineno"> 368</span> }</div>
|
|
<div class="line"><a id="l00369" name="l00369"></a><span class="lineno"> 369</span> }</div>
|
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<div class="line"><a id="l00370" name="l00370"></a><span class="lineno"> 370</span> }</div>
|
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<div class="line"><a id="l00371" name="l00371"></a><span class="lineno"> 371</span> </div>
|
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<div class="line"><a id="l00372" name="l00372"></a><span class="lineno"> 372</span> <span class="comment">// asymmetry</span></div>
|
|
<div class="line"><a id="l00373" name="l00373"></a><span class="lineno"> 373</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a85460ca0ee8a83ec4df01c27b77d8bd5">GetNoOfAsymmetry</a>();</div>
|
|
<div class="line"><a id="l00374" name="l00374"></a><span class="lineno"> 374</span> <span class="keywordflow">if</span> (size > 0) {</div>
|
|
<div class="line"><a id="l00375" name="l00375"></a><span class="lineno"> 375</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
|
|
<div class="line"><a id="l00376" name="l00376"></a><span class="lineno"> 376</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a7643b1f65b94ec022a47e5294a39009b">GetAsymmetry</a>(i);</div>
|
|
<div class="line"><a id="l00377" name="l00377"></a><span class="lineno"> 377</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00378" name="l00378"></a><span class="lineno"> 378</span> <span class="comment">// dump data</span></div>
|
|
<div class="line"><a id="l00379" name="l00379"></a><span class="lineno"> 379</span> <a class="code hl_function" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a>(f, fln, data, runCounter);</div>
|
|
<div class="line"><a id="l00380" name="l00380"></a><span class="lineno"> 380</span> runCounter++;</div>
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<div class="line"><a id="l00381" name="l00381"></a><span class="lineno"> 381</span> }</div>
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<div class="line"><a id="l00382" name="l00382"></a><span class="lineno"> 382</span> }</div>
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<div class="line"><a id="l00383" name="l00383"></a><span class="lineno"> 383</span> }</div>
|
|
<div class="line"><a id="l00384" name="l00384"></a><span class="lineno"> 384</span> </div>
|
|
<div class="line"><a id="l00385" name="l00385"></a><span class="lineno"> 385</span> <span class="comment">// asymmetry RRF</span></div>
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|
<div class="line"><a id="l00386" name="l00386"></a><span class="lineno"> 386</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a1d961b4efae4d1016c13abb66750ca99">GetNoOfAsymmetryRRF</a>();</div>
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|
<div class="line"><a id="l00387" name="l00387"></a><span class="lineno"> 387</span> <span class="keywordflow">if</span> (size > 0) {</div>
|
|
<div class="line"><a id="l00388" name="l00388"></a><span class="lineno"> 388</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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<div class="line"><a id="l00389" name="l00389"></a><span class="lineno"> 389</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#af0efb082b97defd1a07e7e63c75823cc">GetAsymmetryRRF</a>(i);</div>
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|
<div class="line"><a id="l00390" name="l00390"></a><span class="lineno"> 390</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00391" name="l00391"></a><span class="lineno"> 391</span> <span class="comment">// dump data</span></div>
|
|
<div class="line"><a id="l00392" name="l00392"></a><span class="lineno"> 392</span> <a class="code hl_function" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a>(f, fln, data, runCounter);</div>
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|
<div class="line"><a id="l00393" name="l00393"></a><span class="lineno"> 393</span> runCounter++;</div>
|
|
<div class="line"><a id="l00394" name="l00394"></a><span class="lineno"> 394</span> }</div>
|
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<div class="line"><a id="l00395" name="l00395"></a><span class="lineno"> 395</span> }</div>
|
|
<div class="line"><a id="l00396" name="l00396"></a><span class="lineno"> 396</span> }</div>
|
|
<div class="line"><a id="l00397" name="l00397"></a><span class="lineno"> 397</span> </div>
|
|
<div class="line"><a id="l00398" name="l00398"></a><span class="lineno"> 398</span> <span class="comment">// muMinus</span></div>
|
|
<div class="line"><a id="l00399" name="l00399"></a><span class="lineno"> 399</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a143c734e883f4010f7546c1c9369d174">GetNoOfMuMinus</a>();</div>
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|
<div class="line"><a id="l00400" name="l00400"></a><span class="lineno"> 400</span> <span class="keywordflow">if</span> (size > 0) {</div>
|
|
<div class="line"><a id="l00401" name="l00401"></a><span class="lineno"> 401</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
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|
<div class="line"><a id="l00402" name="l00402"></a><span class="lineno"> 402</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#ad629977d3d291ea2b30260d143211172">GetMuMinus</a>(i);</div>
|
|
<div class="line"><a id="l00403" name="l00403"></a><span class="lineno"> 403</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00404" name="l00404"></a><span class="lineno"> 404</span> <span class="comment">// dump data</span></div>
|
|
<div class="line"><a id="l00405" name="l00405"></a><span class="lineno"> 405</span> <a class="code hl_function" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a>(f, fln, data, runCounter);</div>
|
|
<div class="line"><a id="l00406" name="l00406"></a><span class="lineno"> 406</span> runCounter++;</div>
|
|
<div class="line"><a id="l00407" name="l00407"></a><span class="lineno"> 407</span> }</div>
|
|
<div class="line"><a id="l00408" name="l00408"></a><span class="lineno"> 408</span> }</div>
|
|
<div class="line"><a id="l00409" name="l00409"></a><span class="lineno"> 409</span> }</div>
|
|
<div class="line"><a id="l00410" name="l00410"></a><span class="lineno"> 410</span> </div>
|
|
<div class="line"><a id="l00411" name="l00411"></a><span class="lineno"> 411</span> <span class="comment">// nonMusr</span></div>
|
|
<div class="line"><a id="l00412" name="l00412"></a><span class="lineno"> 412</span> size = runList-><a class="code hl_function" href="classPRunListCollection.html#a811c852a4fb6492a8070743a1181323a">GetNoOfNonMusr</a>();</div>
|
|
<div class="line"><a id="l00413" name="l00413"></a><span class="lineno"> 413</span> <span class="keywordflow">if</span> (size > 0) {</div>
|
|
<div class="line"><a id="l00414" name="l00414"></a><span class="lineno"> 414</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i<size; i++) {</div>
|
|
<div class="line"><a id="l00415" name="l00415"></a><span class="lineno"> 415</span> data = runList-><a class="code hl_function" href="classPRunListCollection.html#a357670d57e6ddd1dc575a9e2a3bb321a">GetNonMusr</a>(i);</div>
|
|
<div class="line"><a id="l00416" name="l00416"></a><span class="lineno"> 416</span> <span class="keywordflow">if</span> (data) {</div>
|
|
<div class="line"><a id="l00417" name="l00417"></a><span class="lineno"> 417</span> <span class="comment">// dump data</span></div>
|
|
<div class="line"><a id="l00418" name="l00418"></a><span class="lineno"> 418</span> <a class="code hl_function" href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a>(f, fln, data, runCounter);</div>
|
|
<div class="line"><a id="l00419" name="l00419"></a><span class="lineno"> 419</span> runCounter++;</div>
|
|
<div class="line"><a id="l00420" name="l00420"></a><span class="lineno"> 420</span> }</div>
|
|
<div class="line"><a id="l00421" name="l00421"></a><span class="lineno"> 421</span> }</div>
|
|
<div class="line"><a id="l00422" name="l00422"></a><span class="lineno"> 422</span> }</div>
|
|
<div class="line"><a id="l00423" name="l00423"></a><span class="lineno"> 423</span> </div>
|
|
<div class="line"><a id="l00424" name="l00424"></a><span class="lineno"> 424</span> f.Close(<span class="stringliteral">"R"</span>);</div>
|
|
<div class="line"><a id="l00425" name="l00425"></a><span class="lineno"> 425</span>}</div>
|
|
</div>
|
|
<div class="line"><a id="l00426" name="l00426"></a><span class="lineno"> 426</span> </div>
|
|
<div class="line"><a id="l00427" name="l00427"></a><span class="lineno"> 427</span><span class="comment">//--------------------------------------------------------------------------</span></div>
|
|
<div class="foldopen" id="foldopen00444" data-start="{" data-end="}">
|
|
<div class="line"><a id="l00444" name="l00444"></a><span class="lineno"><a class="line" href="musrfit_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97"> 444</a></span><span class="keywordtype">int</span> <a class="code hl_function" href="musrfit_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97">main</a>(<span class="keywordtype">int</span> argc, <span class="keywordtype">char</span> *argv[])</div>
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<div class="line"><a id="l00445" name="l00445"></a><span class="lineno"> 445</span>{</div>
|
|
<div class="line"><a id="l00446" name="l00446"></a><span class="lineno"> 446</span> </div>
|
|
<div class="line"><a id="l00447" name="l00447"></a><span class="lineno"> 447</span> <span class="keywordtype">bool</span> show_syntax = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00448" name="l00448"></a><span class="lineno"> 448</span> </div>
|
|
<div class="line"><a id="l00449" name="l00449"></a><span class="lineno"> 449</span> <span class="comment">// check syntax (root unrelated)</span></div>
|
|
<div class="line"><a id="l00450" name="l00450"></a><span class="lineno"> 450</span> <span class="keywordflow">if</span> (argc < 2) {</div>
|
|
<div class="line"><a id="l00451" name="l00451"></a><span class="lineno"> 451</span> <a class="code hl_function" href="musrfit_8cpp.html#ada0e5255e2e1889947bab9469353374c">musrfit_syntax</a>();</div>
|
|
<div class="line"><a id="l00452" name="l00452"></a><span class="lineno"> 452</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#ae302f3aff725658e98498c2307e65d92">PMUSR_WRONG_STARTUP_SYNTAX</a>;</div>
|
|
<div class="line"><a id="l00453" name="l00453"></a><span class="lineno"> 453</span> }</div>
|
|
<div class="line"><a id="l00454" name="l00454"></a><span class="lineno"> 454</span> </div>
|
|
<div class="line"><a id="l00455" name="l00455"></a><span class="lineno"> 455</span> <span class="keywordflow">if</span> (argc == 2) {</div>
|
|
<div class="line"><a id="l00456" name="l00456"></a><span class="lineno"> 456</span> <span class="keywordflow">if</span> (!strcmp(argv[1], <span class="stringliteral">"--version"</span>)) {</div>
|
|
<div class="line"><a id="l00457" name="l00457"></a><span class="lineno"> 457</span><span class="preprocessor">#ifdef HAVE_CONFIG_H</span></div>
|
|
<div class="line"><a id="l00458" name="l00458"></a><span class="lineno"> 458</span><span class="preprocessor">#ifdef HAVE_GIT_REV_H</span></div>
|
|
<div class="line"><a id="l00459" name="l00459"></a><span class="lineno"> 459</span> std::cout << std::endl << <span class="stringliteral">"musrfit version: "</span> << PACKAGE_VERSION << <span class="stringliteral">", git-branch: "</span> << GIT_BRANCH << <span class="stringliteral">", git-rev: "</span> << GIT_CURRENT_SHA1 << <span class="stringliteral">" ("</span> << BUILD_TYPE << <span class="stringliteral">"), ROOT version: "</span> << ROOT_VERSION_USED << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00460" name="l00460"></a><span class="lineno"> 460</span><span class="preprocessor">#else</span></div>
|
|
<div class="line"><a id="l00461" name="l00461"></a><span class="lineno"> 461</span> std::cout << std::endl << <span class="stringliteral">"musrfit version: "</span> << PACKAGE_VERSION << <span class="stringliteral">" ("</span> << BUILD_TYPE << <span class="stringliteral">"), ROOT version: "</span> << ROOT_VERSION_USED << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00462" name="l00462"></a><span class="lineno"> 462</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00463" name="l00463"></a><span class="lineno"> 463</span><span class="preprocessor">#else</span></div>
|
|
<div class="line"><a id="l00464" name="l00464"></a><span class="lineno"> 464</span><span class="preprocessor">#ifdef HAVE_GIT_REV_H</span></div>
|
|
<div class="line"><a id="l00465" name="l00465"></a><span class="lineno"> 465</span> std::cout << std::endl << <span class="stringliteral">"musrfit git-branch: "</span> << GIT_BRANCH << <span class="stringliteral">", git-rev: "</span> << GIT_CURRENT_SHA1 << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00466" name="l00466"></a><span class="lineno"> 466</span><span class="preprocessor">#else</span></div>
|
|
<div class="line"><a id="l00467" name="l00467"></a><span class="lineno"> 467</span> std::cout << std::endl << <span class="stringliteral">"musrfit version: unknown"</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00468" name="l00468"></a><span class="lineno"> 468</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00469" name="l00469"></a><span class="lineno"> 469</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00470" name="l00470"></a><span class="lineno"> 470</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>;</div>
|
|
<div class="line"><a id="l00471" name="l00471"></a><span class="lineno"> 471</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[1], <span class="stringliteral">"--nexus-support"</span>)) {</div>
|
|
<div class="line"><a id="l00472" name="l00472"></a><span class="lineno"> 472</span><span class="preprocessor">#ifdef PNEXUS_ENABLED</span></div>
|
|
<div class="line"><a id="l00473" name="l00473"></a><span class="lineno"> 473</span> std::cout << std::endl << <span class="stringliteral">">> musrfit: NeXus support enabled."</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00474" name="l00474"></a><span class="lineno"> 474</span><span class="preprocessor">#else</span></div>
|
|
<div class="line"><a id="l00475" name="l00475"></a><span class="lineno"> 475</span> std::cout << std::endl << <span class="stringliteral">"musrfit: NeXus support NOT enabled."</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00476" name="l00476"></a><span class="lineno"> 476</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00477" name="l00477"></a><span class="lineno"> 477</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>;</div>
|
|
<div class="line"><a id="l00478" name="l00478"></a><span class="lineno"> 478</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[1], <span class="stringliteral">"--help"</span>)) {</div>
|
|
<div class="line"><a id="l00479" name="l00479"></a><span class="lineno"> 479</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00480" name="l00480"></a><span class="lineno"> 480</span> }</div>
|
|
<div class="line"><a id="l00481" name="l00481"></a><span class="lineno"> 481</span> }</div>
|
|
<div class="line"><a id="l00482" name="l00482"></a><span class="lineno"> 482</span> </div>
|
|
<div class="line"><a id="l00483" name="l00483"></a><span class="lineno"> 483</span> <span class="keywordflow">if</span> (show_syntax) {</div>
|
|
<div class="line"><a id="l00484" name="l00484"></a><span class="lineno"> 484</span> <a class="code hl_function" href="musrfit_8cpp.html#ada0e5255e2e1889947bab9469353374c">musrfit_syntax</a>();</div>
|
|
<div class="line"><a id="l00485" name="l00485"></a><span class="lineno"> 485</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#ae302f3aff725658e98498c2307e65d92">PMUSR_WRONG_STARTUP_SYNTAX</a>;</div>
|
|
<div class="line"><a id="l00486" name="l00486"></a><span class="lineno"> 486</span> }</div>
|
|
<div class="line"><a id="l00487" name="l00487"></a><span class="lineno"> 487</span> </div>
|
|
<div class="line"><a id="l00488" name="l00488"></a><span class="lineno"> 488</span> <span class="keywordtype">int</span> <a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a>;</div>
|
|
<div class="line"><a id="l00489" name="l00489"></a><span class="lineno"> 489</span> <span class="keywordtype">bool</span> keep_mn2_output = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00490" name="l00490"></a><span class="lineno"> 490</span> <span class="keywordtype">bool</span> chisq_only = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00491" name="l00491"></a><span class="lineno"> 491</span> <span class="keywordtype">bool</span> yaml_out = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00492" name="l00492"></a><span class="lineno"> 492</span> <span class="keywordtype">bool</span> title_from_data_file = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00493" name="l00493"></a><span class="lineno"> 493</span> <span class="keywordtype">bool</span> timeout_enabled = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00494" name="l00494"></a><span class="lineno"> 494</span> <span class="keywordtype">bool</span> reset_startup_file = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00495" name="l00495"></a><span class="lineno"> 495</span> <a class="code hl_struct" href="structPStartupOptions.html">PStartupOptions</a> startup_options;</div>
|
|
<div class="line"><a id="l00496" name="l00496"></a><span class="lineno"> 496</span> startup_options.<a class="code hl_variable" href="structPStartupOptions.html#a7f886ed1b86706196867dfb7bbd8bcc2">writeExpectedChisq</a> = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00497" name="l00497"></a><span class="lineno"> 497</span> startup_options.<a class="code hl_variable" href="structPStartupOptions.html#abbb6c9ca13071ffb51a87affd7df9f29">estimateN0</a> = <span class="keyword">false</span>; </div>
|
|
<div class="line"><a id="l00498" name="l00498"></a><span class="lineno"> 498</span> <span class="keywordtype">int</span> number_of_cores=1;</div>
|
|
<div class="line"><a id="l00499" name="l00499"></a><span class="lineno"> 499</span> </div>
|
|
<div class="line"><a id="l00500" name="l00500"></a><span class="lineno"> 500</span><span class="preprocessor">#ifdef HAVE_GOMP</span></div>
|
|
<div class="line"><a id="l00501" name="l00501"></a><span class="lineno"> 501</span> number_of_cores = omp_get_num_procs();</div>
|
|
<div class="line"><a id="l00502" name="l00502"></a><span class="lineno"> 502</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00503" name="l00503"></a><span class="lineno"> 503</span> </div>
|
|
<div class="line"><a id="l00504" name="l00504"></a><span class="lineno"> 504</span> TString dump(<span class="stringliteral">""</span>);</div>
|
|
<div class="line"><a id="l00505" name="l00505"></a><span class="lineno"> 505</span> <span class="keywordtype">char</span> filename[1024];</div>
|
|
<div class="line"><a id="l00506" name="l00506"></a><span class="lineno"> 506</span> </div>
|
|
<div class="line"><a id="l00507" name="l00507"></a><span class="lineno"> 507</span> <span class="comment">// add default shared library path /usr/local/lib if not already persent</span></div>
|
|
<div class="line"><a id="l00508" name="l00508"></a><span class="lineno"> 508</span> <span class="keyword">const</span> <span class="keywordtype">char</span> *dsp = gSystem->GetDynamicPath();</div>
|
|
<div class="line"><a id="l00509" name="l00509"></a><span class="lineno"> 509</span> <span class="keywordflow">if</span> (strstr(dsp, <span class="stringliteral">"/usr/local/lib"</span>) == <span class="keyword">nullptr</span>)</div>
|
|
<div class="line"><a id="l00510" name="l00510"></a><span class="lineno"> 510</span> gSystem->AddDynamicPath(<span class="stringliteral">"/usr/local/lib"</span>);</div>
|
|
<div class="line"><a id="l00511" name="l00511"></a><span class="lineno"> 511</span> </div>
|
|
<div class="line"><a id="l00512" name="l00512"></a><span class="lineno"> 512</span> <span class="comment">// check syntax (root related)</span></div>
|
|
<div class="line"><a id="l00513" name="l00513"></a><span class="lineno"> 513</span> <span class="keywordflow">if</span> (argc == 2) {</div>
|
|
<div class="line"><a id="l00514" name="l00514"></a><span class="lineno"> 514</span> <span class="keywordflow">if</span> (!strcmp(argv[1], <span class="stringliteral">"--show-dynamic-path"</span>)) {</div>
|
|
<div class="line"><a id="l00515" name="l00515"></a><span class="lineno"> 515</span> std::cout << std::endl << <span class="stringliteral">"musrfit: internal dynamic search paths for shared libraries/root dictionaries:"</span>;</div>
|
|
<div class="line"><a id="l00516" name="l00516"></a><span class="lineno"> 516</span> std::cout << std::endl << <span class="stringliteral">" '"</span> << gSystem->GetDynamicPath() << <span class="stringliteral">"'"</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00517" name="l00517"></a><span class="lineno"> 517</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>;</div>
|
|
<div class="line"><a id="l00518" name="l00518"></a><span class="lineno"> 518</span> }</div>
|
|
<div class="line"><a id="l00519" name="l00519"></a><span class="lineno"> 519</span> }</div>
|
|
<div class="line"><a id="l00520" name="l00520"></a><span class="lineno"> 520</span> </div>
|
|
<div class="line"><a id="l00521" name="l00521"></a><span class="lineno"> 521</span> memset(filename, <span class="charliteral">'\0'</span>, <span class="keyword">sizeof</span>(filename));</div>
|
|
<div class="line"><a id="l00522" name="l00522"></a><span class="lineno"> 522</span> strcpy(filename, <span class="stringliteral">""</span>);</div>
|
|
<div class="line"><a id="l00523" name="l00523"></a><span class="lineno"> 523</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i=1; i<argc; i++) {</div>
|
|
<div class="line"><a id="l00524" name="l00524"></a><span class="lineno"> 524</span> <span class="keywordflow">if</span> (strstr(argv[i], <span class="stringliteral">".msr"</span>)) {</div>
|
|
<div class="line"><a id="l00525" name="l00525"></a><span class="lineno"> 525</span> strncpy(filename, argv[i], <span class="keyword">sizeof</span>(filename));</div>
|
|
<div class="line"><a id="l00526" name="l00526"></a><span class="lineno"> 526</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-k"</span>) || !strcmp(argv[i], <span class="stringliteral">"--keep-mn2-output"</span>)) {</div>
|
|
<div class="line"><a id="l00527" name="l00527"></a><span class="lineno"> 527</span> keep_mn2_output = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00528" name="l00528"></a><span class="lineno"> 528</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-c"</span>) || !strcmp(argv[i], <span class="stringliteral">"--chisq-only"</span>)) {</div>
|
|
<div class="line"><a id="l00529" name="l00529"></a><span class="lineno"> 529</span> chisq_only = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00530" name="l00530"></a><span class="lineno"> 530</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-t"</span>) || !strcmp(argv[i], <span class="stringliteral">"--title-from-data-file"</span>)) {</div>
|
|
<div class="line"><a id="l00531" name="l00531"></a><span class="lineno"> 531</span> title_from_data_file = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00532" name="l00532"></a><span class="lineno"> 532</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"--dump"</span>)) {</div>
|
|
<div class="line"><a id="l00533" name="l00533"></a><span class="lineno"> 533</span> <span class="keywordflow">if</span> (i<argc-1) {</div>
|
|
<div class="line"><a id="l00534" name="l00534"></a><span class="lineno"> 534</span> dump = TString(argv[i+1]);</div>
|
|
<div class="line"><a id="l00535" name="l00535"></a><span class="lineno"> 535</span> i++;</div>
|
|
<div class="line"><a id="l00536" name="l00536"></a><span class="lineno"> 536</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00537" name="l00537"></a><span class="lineno"> 537</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **ERROR** found option --dump without <type>"</span> << std::endl;</div>
|
|
<div class="line"><a id="l00538" name="l00538"></a><span class="lineno"> 538</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00539" name="l00539"></a><span class="lineno"> 539</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00540" name="l00540"></a><span class="lineno"> 540</span> }</div>
|
|
<div class="line"><a id="l00541" name="l00541"></a><span class="lineno"> 541</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-e"</span>) || !strcmp(argv[i], <span class="stringliteral">"--estimateN0"</span>)) {</div>
|
|
<div class="line"><a id="l00542" name="l00542"></a><span class="lineno"> 542</span> startup_options.<a class="code hl_variable" href="structPStartupOptions.html#abbb6c9ca13071ffb51a87affd7df9f29">estimateN0</a> = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00543" name="l00543"></a><span class="lineno"> 543</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-p"</span>) || !strcmp(argv[i], <span class="stringliteral">"--per-run-block-chisq"</span>)) {</div>
|
|
<div class="line"><a id="l00544" name="l00544"></a><span class="lineno"> 544</span> startup_options.<a class="code hl_variable" href="structPStartupOptions.html#a7f886ed1b86706196867dfb7bbd8bcc2">writeExpectedChisq</a> = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00545" name="l00545"></a><span class="lineno"> 545</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-y"</span>) || !strcmp(argv[i], <span class="stringliteral">"--yaml"</span>)) {</div>
|
|
<div class="line"><a id="l00546" name="l00546"></a><span class="lineno"> 546</span> yaml_out = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00547" name="l00547"></a><span class="lineno"> 547</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-n"</span>) || !strcmp(argv[i], <span class="stringliteral">"--no-of-cores-avail"</span>)) {</div>
|
|
<div class="line"><a id="l00548" name="l00548"></a><span class="lineno"> 548</span><span class="preprocessor">#ifdef HAVE_GOMP</span></div>
|
|
<div class="line"><a id="l00549" name="l00549"></a><span class="lineno"> 549</span> std::cout << std::endl;</div>
|
|
<div class="line"><a id="l00550" name="l00550"></a><span class="lineno"> 550</span> std::cout << <span class="stringliteral">"musrfit: maxmimal number of cores for OpenMP available: "</span> << omp_get_num_procs() << std::endl;</div>
|
|
<div class="line"><a id="l00551" name="l00551"></a><span class="lineno"> 551</span> std::cout << std::endl;</div>
|
|
<div class="line"><a id="l00552" name="l00552"></a><span class="lineno"> 552</span><span class="preprocessor">#else</span></div>
|
|
<div class="line"><a id="l00553" name="l00553"></a><span class="lineno"> 553</span> std::cout << std::endl;</div>
|
|
<div class="line"><a id="l00554" name="l00554"></a><span class="lineno"> 554</span> std::cout << <span class="stringliteral">">> musrfit: this option is only vaild if OpenMP is present. This seems not to be the case here. Sorry!"</span> << std::endl;</div>
|
|
<div class="line"><a id="l00555" name="l00555"></a><span class="lineno"> 555</span> std::cout << std::endl;</div>
|
|
<div class="line"><a id="l00556" name="l00556"></a><span class="lineno"> 556</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00557" name="l00557"></a><span class="lineno"> 557</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>;</div>
|
|
<div class="line"><a id="l00558" name="l00558"></a><span class="lineno"> 558</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-u"</span>) || !strcmp(argv[i], <span class="stringliteral">"--use-no-of-threads"</span>)) {</div>
|
|
<div class="line"><a id="l00559" name="l00559"></a><span class="lineno"> 559</span> <span class="keywordflow">if</span> (i<argc-1) {</div>
|
|
<div class="line"><a id="l00560" name="l00560"></a><span class="lineno"> 560</span> TString str(argv[i+1]);</div>
|
|
<div class="line"><a id="l00561" name="l00561"></a><span class="lineno"> 561</span> <span class="keywordflow">if</span> (str.IsFloat()) {</div>
|
|
<div class="line"><a id="l00562" name="l00562"></a><span class="lineno"> 562</span> <span class="keywordtype">int</span> ival = str.Atoi();</div>
|
|
<div class="line"><a id="l00563" name="l00563"></a><span class="lineno"> 563</span> <span class="keywordflow">if</span> (ival <= 0) {</div>
|
|
<div class="line"><a id="l00564" name="l00564"></a><span class="lineno"> 564</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **ERROR** found option --use-no-of-threads with <number> <= 0"</span> << std::endl;</div>
|
|
<div class="line"><a id="l00565" name="l00565"></a><span class="lineno"> 565</span> std::cerr << <span class="stringliteral">" This doesn't make any sense."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00566" name="l00566"></a><span class="lineno"> 566</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00567" name="l00567"></a><span class="lineno"> 567</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00568" name="l00568"></a><span class="lineno"> 568</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (ival > number_of_cores) {</div>
|
|
<div class="line"><a id="l00569" name="l00569"></a><span class="lineno"> 569</span><span class="preprocessor">#ifdef HAVE_GOMP</span></div>
|
|
<div class="line"><a id="l00570" name="l00570"></a><span class="lineno"> 570</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **WARNING** found option --use-no-of-threads with <number>="</span> << ival << <span class="stringliteral">" > max available cores="</span> << number_of_cores << <span class="stringliteral">"."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00571" name="l00571"></a><span class="lineno"> 571</span> std::cerr << <span class="stringliteral">" Will set <number> to max available cores."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00572" name="l00572"></a><span class="lineno"> 572</span><span class="preprocessor">#else</span></div>
|
|
<div class="line"><a id="l00573" name="l00573"></a><span class="lineno"> 573</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **WARNING** option --use-no-of-threads can only be used if OpenMP is available."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00574" name="l00574"></a><span class="lineno"> 574</span> std::cerr << <span class="stringliteral">" Here it is not the case, and hence this option will be ignored."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00575" name="l00575"></a><span class="lineno"> 575</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00576" name="l00576"></a><span class="lineno"> 576</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00577" name="l00577"></a><span class="lineno"> 577</span> number_of_cores = ival;</div>
|
|
<div class="line"><a id="l00578" name="l00578"></a><span class="lineno"> 578</span> }</div>
|
|
<div class="line"><a id="l00579" name="l00579"></a><span class="lineno"> 579</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00580" name="l00580"></a><span class="lineno"> 580</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **ERROR** found option --use-no-of-threads where <number> it not a number: '"</span> << argv[i+1] << <span class="stringliteral">"'"</span> << std::endl;</div>
|
|
<div class="line"><a id="l00581" name="l00581"></a><span class="lineno"> 581</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00582" name="l00582"></a><span class="lineno"> 582</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00583" name="l00583"></a><span class="lineno"> 583</span> }</div>
|
|
<div class="line"><a id="l00584" name="l00584"></a><span class="lineno"> 584</span> i++;</div>
|
|
<div class="line"><a id="l00585" name="l00585"></a><span class="lineno"> 585</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00586" name="l00586"></a><span class="lineno"> 586</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **ERROR** found option --use-no-of-threads without <number>"</span> << std::endl;</div>
|
|
<div class="line"><a id="l00587" name="l00587"></a><span class="lineno"> 587</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00588" name="l00588"></a><span class="lineno"> 588</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00589" name="l00589"></a><span class="lineno"> 589</span> }</div>
|
|
<div class="line"><a id="l00590" name="l00590"></a><span class="lineno"> 590</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"-r"</span>) || !strcmp(argv[i], <span class="stringliteral">"--reset"</span>)) {</div>
|
|
<div class="line"><a id="l00591" name="l00591"></a><span class="lineno"> 591</span> reset_startup_file = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00592" name="l00592"></a><span class="lineno"> 592</span> } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (!strcmp(argv[i], <span class="stringliteral">"--timeout"</span>)) {</div>
|
|
<div class="line"><a id="l00593" name="l00593"></a><span class="lineno"> 593</span> <span class="keywordflow">if</span> (i<argc-1) {</div>
|
|
<div class="line"><a id="l00594" name="l00594"></a><span class="lineno"> 594</span> TString str(argv[i+1]);</div>
|
|
<div class="line"><a id="l00595" name="l00595"></a><span class="lineno"> 595</span> <span class="keywordflow">if</span> (str.IsFloat()) {</div>
|
|
<div class="line"><a id="l00596" name="l00596"></a><span class="lineno"> 596</span> <a class="code hl_variable" href="musrfit_8cpp.html#a493b57f443cc38b3d3df9c1e584d9d82">timeout</a> = str.Atoi();</div>
|
|
<div class="line"><a id="l00597" name="l00597"></a><span class="lineno"> 597</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="musrfit_8cpp.html#a493b57f443cc38b3d3df9c1e584d9d82">timeout</a> <= 0) {</div>
|
|
<div class="line"><a id="l00598" name="l00598"></a><span class="lineno"> 598</span> timeout_enabled = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00599" name="l00599"></a><span class="lineno"> 599</span> std::cout << std::endl << <span class="stringliteral">">> musrfit: timeout disabled."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00600" name="l00600"></a><span class="lineno"> 600</span> }</div>
|
|
<div class="line"><a id="l00601" name="l00601"></a><span class="lineno"> 601</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00602" name="l00602"></a><span class="lineno"> 602</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **ERROR** found option --timeout with unsupported <timeout_tag> = "</span> << argv[i+1] << std::endl;</div>
|
|
<div class="line"><a id="l00603" name="l00603"></a><span class="lineno"> 603</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00604" name="l00604"></a><span class="lineno"> 604</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00605" name="l00605"></a><span class="lineno"> 605</span> }</div>
|
|
<div class="line"><a id="l00606" name="l00606"></a><span class="lineno"> 606</span> i++;</div>
|
|
<div class="line"><a id="l00607" name="l00607"></a><span class="lineno"> 607</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00608" name="l00608"></a><span class="lineno"> 608</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **ERROR** found option --timeout without <timeout_tag>"</span> << std::endl;</div>
|
|
<div class="line"><a id="l00609" name="l00609"></a><span class="lineno"> 609</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00610" name="l00610"></a><span class="lineno"> 610</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00611" name="l00611"></a><span class="lineno"> 611</span> }</div>
|
|
<div class="line"><a id="l00612" name="l00612"></a><span class="lineno"> 612</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00613" name="l00613"></a><span class="lineno"> 613</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00614" name="l00614"></a><span class="lineno"> 614</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00615" name="l00615"></a><span class="lineno"> 615</span> }</div>
|
|
<div class="line"><a id="l00616" name="l00616"></a><span class="lineno"> 616</span> }</div>
|
|
<div class="line"><a id="l00617" name="l00617"></a><span class="lineno"> 617</span> </div>
|
|
<div class="line"><a id="l00618" name="l00618"></a><span class="lineno"> 618</span> <span class="comment">// check if a filename is present</span></div>
|
|
<div class="line"><a id="l00619" name="l00619"></a><span class="lineno"> 619</span> <span class="keywordflow">if</span> ((strlen(filename) == 0) && !reset_startup_file) {</div>
|
|
<div class="line"><a id="l00620" name="l00620"></a><span class="lineno"> 620</span> show_syntax = <span class="keyword">true</span>;</div>
|
|
<div class="line"><a id="l00621" name="l00621"></a><span class="lineno"> 621</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **ERROR** no msr-file present!"</span> << std::endl;</div>
|
|
<div class="line"><a id="l00622" name="l00622"></a><span class="lineno"> 622</span> }</div>
|
|
<div class="line"><a id="l00623" name="l00623"></a><span class="lineno"> 623</span> </div>
|
|
<div class="line"><a id="l00624" name="l00624"></a><span class="lineno"> 624</span> <span class="keywordflow">if</span> (show_syntax) {</div>
|
|
<div class="line"><a id="l00625" name="l00625"></a><span class="lineno"> 625</span> <a class="code hl_function" href="musrfit_8cpp.html#ada0e5255e2e1889947bab9469353374c">musrfit_syntax</a>();</div>
|
|
<div class="line"><a id="l00626" name="l00626"></a><span class="lineno"> 626</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#ae302f3aff725658e98498c2307e65d92">PMUSR_WRONG_STARTUP_SYNTAX</a>;</div>
|
|
<div class="line"><a id="l00627" name="l00627"></a><span class="lineno"> 627</span> }</div>
|
|
<div class="line"><a id="l00628" name="l00628"></a><span class="lineno"> 628</span> </div>
|
|
<div class="line"><a id="l00629" name="l00629"></a><span class="lineno"> 629</span> <span class="comment">// check if dump string does make sense</span></div>
|
|
<div class="line"><a id="l00630" name="l00630"></a><span class="lineno"> 630</span> <span class="keywordflow">if</span> (!dump.IsNull()) {</div>
|
|
<div class="line"><a id="l00631" name="l00631"></a><span class="lineno"> 631</span> dump.ToLower();</div>
|
|
<div class="line"><a id="l00632" name="l00632"></a><span class="lineno"> 632</span> <span class="keywordflow">if</span> (!dump.Contains(<span class="stringliteral">"ascii"</span>) && !dump.Contains(<span class="stringliteral">"root"</span>)) {</div>
|
|
<div class="line"><a id="l00633" name="l00633"></a><span class="lineno"> 633</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit: **ERROR** found option --dump with unsupported <type> = "</span> << dump << std::endl;</div>
|
|
<div class="line"><a id="l00634" name="l00634"></a><span class="lineno"> 634</span> <a class="code hl_function" href="musrfit_8cpp.html#ada0e5255e2e1889947bab9469353374c">musrfit_syntax</a>();</div>
|
|
<div class="line"><a id="l00635" name="l00635"></a><span class="lineno"> 635</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#ae302f3aff725658e98498c2307e65d92">PMUSR_WRONG_STARTUP_SYNTAX</a>;</div>
|
|
<div class="line"><a id="l00636" name="l00636"></a><span class="lineno"> 636</span> }</div>
|
|
<div class="line"><a id="l00637" name="l00637"></a><span class="lineno"> 637</span> }</div>
|
|
<div class="line"><a id="l00638" name="l00638"></a><span class="lineno"> 638</span> </div>
|
|
<div class="line"><a id="l00639" name="l00639"></a><span class="lineno"> 639</span> <span class="comment">// read startup file</span></div>
|
|
<div class="line"><a id="l00640" name="l00640"></a><span class="lineno"> 640</span> <span class="keywordtype">char</span> <a class="code hl_variable" href="PStartupHandler_8cpp.html#a14f38a2b207431cd74f276626988b0ea">startup_path_name</a>[128];</div>
|
|
<div class="line"><a id="l00641" name="l00641"></a><span class="lineno"> 641</span> std::unique_ptr<TSAXParser> saxParser = std::make_unique<TSAXParser>();</div>
|
|
<div class="line"><a id="l00642" name="l00642"></a><span class="lineno"> 642</span> std::unique_ptr<PStartupHandler> startupHandler = std::make_unique<PStartupHandler>(reset_startup_file);</div>
|
|
<div class="line"><a id="l00643" name="l00643"></a><span class="lineno"> 643</span> <span class="keywordflow">if</span> (reset_startup_file) <span class="comment">// only rewrite musrfit_startup.xml has been requested</span></div>
|
|
<div class="line"><a id="l00644" name="l00644"></a><span class="lineno"> 644</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>;</div>
|
|
<div class="line"><a id="l00645" name="l00645"></a><span class="lineno"> 645</span> <span class="keywordflow">if</span> (!startupHandler->StartupFileFound()) {</div>
|
|
<div class="line"><a id="l00646" name="l00646"></a><span class="lineno"> 646</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit **WARNING** couldn't find "</span> << startupHandler->GetStartupFilePath().Data();</div>
|
|
<div class="line"><a id="l00647" name="l00647"></a><span class="lineno"> 647</span> std::cerr << std::endl;</div>
|
|
<div class="line"><a id="l00648" name="l00648"></a><span class="lineno"> 648</span> } <span class="keywordflow">else</span> {</div>
|
|
<div class="line"><a id="l00649" name="l00649"></a><span class="lineno"> 649</span> memset(<a class="code hl_variable" href="PStartupHandler_8cpp.html#a14f38a2b207431cd74f276626988b0ea">startup_path_name</a>, <span class="charliteral">'\0'</span>, <span class="keyword">sizeof</span>(<a class="code hl_variable" href="PStartupHandler_8cpp.html#a14f38a2b207431cd74f276626988b0ea">startup_path_name</a>));</div>
|
|
<div class="line"><a id="l00650" name="l00650"></a><span class="lineno"> 650</span> strncpy(<a class="code hl_variable" href="PStartupHandler_8cpp.html#a14f38a2b207431cd74f276626988b0ea">startup_path_name</a>, startupHandler->GetStartupFilePath().Data(), <span class="keyword">sizeof</span>(<a class="code hl_variable" href="PStartupHandler_8cpp.html#a14f38a2b207431cd74f276626988b0ea">startup_path_name</a>));</div>
|
|
<div class="line"><a id="l00651" name="l00651"></a><span class="lineno"> 651</span> saxParser->ConnectToHandler(<span class="stringliteral">"PStartupHandler"</span>, startupHandler.get());</div>
|
|
<div class="line"><a id="l00652" name="l00652"></a><span class="lineno"> 652</span> <span class="comment">//status = saxParser->ParseFile(startup_path_name);</span></div>
|
|
<div class="line"><a id="l00653" name="l00653"></a><span class="lineno"> 653</span> <span class="comment">// parsing the file as above seems to lead to problems in certain environments;</span></div>
|
|
<div class="line"><a id="l00654" name="l00654"></a><span class="lineno"> 654</span> <span class="comment">// use the parseXmlFile function instead (see PStartupHandler.cpp for the definition)</span></div>
|
|
<div class="line"><a id="l00655" name="l00655"></a><span class="lineno"> 655</span> <a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a> = <a class="code hl_function" href="PStartupHandler_8h.html#a2f473e587e18e6a64b260870ec870a5e">parseXmlFile</a>(saxParser.get(), <a class="code hl_variable" href="PStartupHandler_8cpp.html#a14f38a2b207431cd74f276626988b0ea">startup_path_name</a>);</div>
|
|
<div class="line"><a id="l00656" name="l00656"></a><span class="lineno"> 656</span> <span class="comment">// check for parse errors</span></div>
|
|
<div class="line"><a id="l00657" name="l00657"></a><span class="lineno"> 657</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a>) { <span class="comment">// error</span></div>
|
|
<div class="line"><a id="l00658" name="l00658"></a><span class="lineno"> 658</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit **WARNING** Reading/parsing musrfit_startup.xml failed."</span>;</div>
|
|
<div class="line"><a id="l00659" name="l00659"></a><span class="lineno"> 659</span> std::cerr << std::endl;</div>
|
|
<div class="line"><a id="l00660" name="l00660"></a><span class="lineno"> 660</span> }</div>
|
|
<div class="line"><a id="l00661" name="l00661"></a><span class="lineno"> 661</span> }</div>
|
|
<div class="line"><a id="l00662" name="l00662"></a><span class="lineno"> 662</span> </div>
|
|
<div class="line"><a id="l00663" name="l00663"></a><span class="lineno"> 663</span><span class="preprocessor">#ifdef HAVE_GOMP</span></div>
|
|
<div class="line"><a id="l00664" name="l00664"></a><span class="lineno"> 664</span> <span class="comment">// set omp_set_num_threads</span></div>
|
|
<div class="line"><a id="l00665" name="l00665"></a><span class="lineno"> 665</span> omp_set_num_threads(number_of_cores);</div>
|
|
<div class="line"><a id="l00666" name="l00666"></a><span class="lineno"> 666</span><span class="preprocessor">#endif</span></div>
|
|
<div class="line"><a id="l00667" name="l00667"></a><span class="lineno"> 667</span> </div>
|
|
<div class="line"><a id="l00668" name="l00668"></a><span class="lineno"> 668</span> <span class="comment">// read msr-file</span></div>
|
|
<div class="line"><a id="l00669" name="l00669"></a><span class="lineno"> 669</span> std::unique_ptr<PMsrHandler> msrHandler;</div>
|
|
<div class="line"><a id="l00670" name="l00670"></a><span class="lineno"> 670</span> <span class="keywordflow">if</span> (startupHandler)</div>
|
|
<div class="line"><a id="l00671" name="l00671"></a><span class="lineno"> 671</span> msrHandler = std::make_unique<PMsrHandler>(filename, &startup_options);</div>
|
|
<div class="line"><a id="l00672" name="l00672"></a><span class="lineno"> 672</span> <span class="keywordflow">else</span></div>
|
|
<div class="line"><a id="l00673" name="l00673"></a><span class="lineno"> 673</span> msrHandler = std::make_unique<PMsrHandler>(filename);</div>
|
|
<div class="line"><a id="l00674" name="l00674"></a><span class="lineno"> 674</span> <a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a> = msrHandler->ReadMsrFile();</div>
|
|
<div class="line"><a id="l00675" name="l00675"></a><span class="lineno"> 675</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a> != <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>) {</div>
|
|
<div class="line"><a id="l00676" name="l00676"></a><span class="lineno"> 676</span> <span class="keywordflow">switch</span> (<a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a>) {</div>
|
|
<div class="line"><a id="l00677" name="l00677"></a><span class="lineno"> 677</span> <span class="keywordflow">case</span> <a class="code hl_define" href="PMusr_8h.html#a5687f9a34804e32efa7bf54636201ff9">PMUSR_MSR_FILE_NOT_FOUND</a>:</div>
|
|
<div class="line"><a id="l00678" name="l00678"></a><span class="lineno"> 678</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **ERROR** couldn't find "</span> << filename << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00679" name="l00679"></a><span class="lineno"> 679</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00680" name="l00680"></a><span class="lineno"> 680</span> <span class="keywordflow">case</span> <a class="code hl_define" href="PMusr_8h.html#a8e2562ad47e71e264e858832bc4d3b14">PMUSR_MSR_SYNTAX_ERROR</a>:</div>
|
|
<div class="line"><a id="l00681" name="l00681"></a><span class="lineno"> 681</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **SYNTAX ERROR** in file "</span> << filename << <span class="stringliteral">", full stop here."</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00682" name="l00682"></a><span class="lineno"> 682</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00683" name="l00683"></a><span class="lineno"> 683</span> <span class="keywordflow">default</span>:</div>
|
|
<div class="line"><a id="l00684" name="l00684"></a><span class="lineno"> 684</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **UNKOWN ERROR** when trying to read the msr-file"</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00685" name="l00685"></a><span class="lineno"> 685</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00686" name="l00686"></a><span class="lineno"> 686</span> }</div>
|
|
<div class="line"><a id="l00687" name="l00687"></a><span class="lineno"> 687</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a>;</div>
|
|
<div class="line"><a id="l00688" name="l00688"></a><span class="lineno"> 688</span> }</div>
|
|
<div class="line"><a id="l00689" name="l00689"></a><span class="lineno"> 689</span> </div>
|
|
<div class="line"><a id="l00690" name="l00690"></a><span class="lineno"> 690</span> <span class="comment">// read all the necessary runs (raw data)</span></div>
|
|
<div class="line"><a id="l00691" name="l00691"></a><span class="lineno"> 691</span> std::unique_ptr<PRunDataHandler> dataHandler;</div>
|
|
<div class="line"><a id="l00692" name="l00692"></a><span class="lineno"> 692</span> <span class="keywordflow">if</span> (startupHandler)</div>
|
|
<div class="line"><a id="l00693" name="l00693"></a><span class="lineno"> 693</span> dataHandler = std::make_unique<PRunDataHandler>(msrHandler.get(), startupHandler->GetDataPathList());</div>
|
|
<div class="line"><a id="l00694" name="l00694"></a><span class="lineno"> 694</span> <span class="keywordflow">else</span></div>
|
|
<div class="line"><a id="l00695" name="l00695"></a><span class="lineno"> 695</span> dataHandler = std::make_unique<PRunDataHandler>(msrHandler.get());</div>
|
|
<div class="line"><a id="l00696" name="l00696"></a><span class="lineno"> 696</span> </div>
|
|
<div class="line"><a id="l00697" name="l00697"></a><span class="lineno"> 697</span> dataHandler->ReadData();</div>
|
|
<div class="line"><a id="l00698" name="l00698"></a><span class="lineno"> 698</span> </div>
|
|
<div class="line"><a id="l00699" name="l00699"></a><span class="lineno"> 699</span> <span class="keywordtype">bool</span> success = dataHandler->IsAllDataAvailable();</div>
|
|
<div class="line"><a id="l00700" name="l00700"></a><span class="lineno"> 700</span> <span class="keywordflow">if</span> (!success) {</div>
|
|
<div class="line"><a id="l00701" name="l00701"></a><span class="lineno"> 701</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit **ERROR** Couldn't read all data files, will quit ..."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00702" name="l00702"></a><span class="lineno"> 702</span> }</div>
|
|
<div class="line"><a id="l00703" name="l00703"></a><span class="lineno"> 703</span> </div>
|
|
<div class="line"><a id="l00704" name="l00704"></a><span class="lineno"> 704</span> <span class="comment">// if present, replace the run title of the <msr-file> with the run title of the FIRST run in the run block of the msr-file</span></div>
|
|
<div class="line"><a id="l00705" name="l00705"></a><span class="lineno"> 705</span> <span class="keywordflow">if</span> (title_from_data_file && success) {</div>
|
|
<div class="line"><a id="l00706" name="l00706"></a><span class="lineno"> 706</span> <a class="code hl_typedef" href="PMusr_8h.html#a4073f6987fbfc4322a522b8d112520ae">PMsrRunList</a> *rl = msrHandler->GetMsrRunList();</div>
|
|
<div class="line"><a id="l00707" name="l00707"></a><span class="lineno"> 707</span> <span class="keywordflow">if</span> (rl->empty()) {</div>
|
|
<div class="line"><a id="l00708" name="l00708"></a><span class="lineno"> 708</span> success = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00709" name="l00709"></a><span class="lineno"> 709</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit **ERROR** no run list present."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00710" name="l00710"></a><span class="lineno"> 710</span> }</div>
|
|
<div class="line"><a id="l00711" name="l00711"></a><span class="lineno"> 711</span> <span class="keywordflow">if</span> (success) {</div>
|
|
<div class="line"><a id="l00712" name="l00712"></a><span class="lineno"> 712</span> TString *name = rl->at(0).GetRunName();</div>
|
|
<div class="line"><a id="l00713" name="l00713"></a><span class="lineno"> 713</span> <span class="keywordflow">if</span> (name == <span class="keyword">nullptr</span>) {</div>
|
|
<div class="line"><a id="l00714" name="l00714"></a><span class="lineno"> 714</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit **ERROR** to obtain run list name."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00715" name="l00715"></a><span class="lineno"> 715</span> success = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00716" name="l00716"></a><span class="lineno"> 716</span> }</div>
|
|
<div class="line"><a id="l00717" name="l00717"></a><span class="lineno"> 717</span> <a class="code hl_class" href="classPRawRunData.html">PRawRunData</a> *rrd = <span class="keyword">nullptr</span>;</div>
|
|
<div class="line"><a id="l00718" name="l00718"></a><span class="lineno"> 718</span> <span class="keywordflow">if</span> (success) {</div>
|
|
<div class="line"><a id="l00719" name="l00719"></a><span class="lineno"> 719</span> rrd = dataHandler->GetRunData(*(rl->at(0).GetRunName()));</div>
|
|
<div class="line"><a id="l00720" name="l00720"></a><span class="lineno"> 720</span> <span class="keywordflow">if</span> (rrd == <span class="keyword">nullptr</span>) {</div>
|
|
<div class="line"><a id="l00721" name="l00721"></a><span class="lineno"> 721</span> std::cerr << std::endl << <span class="stringliteral">">> musrfit **ERROR** no raw run data avaliable."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00722" name="l00722"></a><span class="lineno"> 722</span> success = <span class="keyword">false</span>;</div>
|
|
<div class="line"><a id="l00723" name="l00723"></a><span class="lineno"> 723</span> }</div>
|
|
<div class="line"><a id="l00724" name="l00724"></a><span class="lineno"> 724</span> }</div>
|
|
<div class="line"><a id="l00725" name="l00725"></a><span class="lineno"> 725</span> <span class="keywordflow">if</span> (success) {</div>
|
|
<div class="line"><a id="l00726" name="l00726"></a><span class="lineno"> 726</span> <span class="keywordflow">if</span> (rrd-><a class="code hl_function" href="classPRawRunData.html#ab245f670084572e1ad6d81f4f1f0486a">GetRunTitle</a>()->Length() > 0)</div>
|
|
<div class="line"><a id="l00727" name="l00727"></a><span class="lineno"> 727</span> msrHandler->SetMsrTitle(*rrd-><a class="code hl_function" href="classPRawRunData.html#ab245f670084572e1ad6d81f4f1f0486a">GetRunTitle</a>());</div>
|
|
<div class="line"><a id="l00728" name="l00728"></a><span class="lineno"> 728</span> }</div>
|
|
<div class="line"><a id="l00729" name="l00729"></a><span class="lineno"> 729</span> }</div>
|
|
<div class="line"><a id="l00730" name="l00730"></a><span class="lineno"> 730</span> }</div>
|
|
<div class="line"><a id="l00731" name="l00731"></a><span class="lineno"> 731</span> </div>
|
|
<div class="line"><a id="l00732" name="l00732"></a><span class="lineno"> 732</span> <span class="comment">// generate the necessary fit histogramms for the fit</span></div>
|
|
<div class="line"><a id="l00733" name="l00733"></a><span class="lineno"> 733</span> std::unique_ptr<PRunListCollection> runListCollection;</div>
|
|
<div class="line"><a id="l00734" name="l00734"></a><span class="lineno"> 734</span> <span class="keywordflow">if</span> (success) {</div>
|
|
<div class="line"><a id="l00735" name="l00735"></a><span class="lineno"> 735</span> <span class="comment">// feed all the necessary histogramms for the fit </span></div>
|
|
<div class="line"><a id="l00736" name="l00736"></a><span class="lineno"> 736</span> runListCollection = std::make_unique<PRunListCollection>(msrHandler.get(), dataHandler.get());</div>
|
|
<div class="line"><a id="l00737" name="l00737"></a><span class="lineno"> 737</span> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> <span class="keywordtype">int</span> i=0; i < msrHandler->GetMsrRunList()->size(); i++) {</div>
|
|
<div class="line"><a id="l00738" name="l00738"></a><span class="lineno"> 738</span> success = runListCollection->Add(i, <a class="code hl_enumvalue" href="PMusr_8h.html#a3168a2cda2474c28fe329358530331aba6d36a468d5cc6244a9c4b150e0b107a7">kFit</a>);</div>
|
|
<div class="line"><a id="l00739" name="l00739"></a><span class="lineno"> 739</span> <span class="keywordflow">if</span> (!success) {</div>
|
|
<div class="line"><a id="l00740" name="l00740"></a><span class="lineno"> 740</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **ERROR** Couldn't handle run no "</span> << i+1 << <span class="stringliteral">": "</span>;</div>
|
|
<div class="line"><a id="l00741" name="l00741"></a><span class="lineno"> 741</span> std::cout << (*msrHandler->GetMsrRunList())[i].GetRunName()->Data();</div>
|
|
<div class="line"><a id="l00742" name="l00742"></a><span class="lineno"> 742</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00743" name="l00743"></a><span class="lineno"> 743</span> }</div>
|
|
<div class="line"><a id="l00744" name="l00744"></a><span class="lineno"> 744</span> }</div>
|
|
<div class="line"><a id="l00745" name="l00745"></a><span class="lineno"> 745</span> }</div>
|
|
<div class="line"><a id="l00746" name="l00746"></a><span class="lineno"> 746</span> </div>
|
|
<div class="line"><a id="l00747" name="l00747"></a><span class="lineno"> 747</span> <span class="comment">// start timeout thread</span></div>
|
|
<div class="line"><a id="l00748" name="l00748"></a><span class="lineno"> 748</span> std::unique_ptr<TThread> th;</div>
|
|
<div class="line"><a id="l00749" name="l00749"></a><span class="lineno"> 749</span> <span class="keywordflow">if</span> (timeout_enabled) {</div>
|
|
<div class="line"><a id="l00750" name="l00750"></a><span class="lineno"> 750</span> <span class="keyword">static</span> pid_t musrfit_pid = getpid();</div>
|
|
<div class="line"><a id="l00751" name="l00751"></a><span class="lineno"> 751</span> th = std::make_unique<TThread>(<a class="code hl_function" href="musrfit_8cpp.html#a82d0f397af9d67283cf3109a837e8361">musrfit_timeout</a>, (<span class="keywordtype">void</span>*)&musrfit_pid);</div>
|
|
<div class="line"><a id="l00752" name="l00752"></a><span class="lineno"> 752</span> <span class="keywordflow">if</span> (th) {</div>
|
|
<div class="line"><a id="l00753" name="l00753"></a><span class="lineno"> 753</span> th->Run();</div>
|
|
<div class="line"><a id="l00754" name="l00754"></a><span class="lineno"> 754</span> }</div>
|
|
<div class="line"><a id="l00755" name="l00755"></a><span class="lineno"> 755</span> }</div>
|
|
<div class="line"><a id="l00756" name="l00756"></a><span class="lineno"> 756</span> </div>
|
|
<div class="line"><a id="l00757" name="l00757"></a><span class="lineno"> 757</span> <span class="comment">// do fitting</span></div>
|
|
<div class="line"><a id="l00758" name="l00758"></a><span class="lineno"> 758</span> std::unique_ptr<PFitter> fitter;</div>
|
|
<div class="line"><a id="l00759" name="l00759"></a><span class="lineno"> 759</span> <span class="keywordflow">if</span> (success) {</div>
|
|
<div class="line"><a id="l00760" name="l00760"></a><span class="lineno"> 760</span> fitter = std::make_unique<PFitter>(msrHandler.get(), runListCollection.get(), chisq_only, yaml_out);</div>
|
|
<div class="line"><a id="l00761" name="l00761"></a><span class="lineno"> 761</span> <span class="keywordflow">if</span> (fitter->IsValid()) {</div>
|
|
<div class="line"><a id="l00762" name="l00762"></a><span class="lineno"> 762</span> fitter->DoFit();</div>
|
|
<div class="line"><a id="l00763" name="l00763"></a><span class="lineno"> 763</span> <span class="keywordflow">if</span> (!fitter->IsScanOnly())</div>
|
|
<div class="line"><a id="l00764" name="l00764"></a><span class="lineno"> 764</span> msrHandler->SetMsrStatisticConverged(fitter->HasConverged());</div>
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|
<div class="line"><a id="l00765" name="l00765"></a><span class="lineno"> 765</span> }</div>
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<div class="line"><a id="l00766" name="l00766"></a><span class="lineno"> 766</span> }</div>
|
|
<div class="line"><a id="l00767" name="l00767"></a><span class="lineno"> 767</span> </div>
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|
<div class="line"><a id="l00768" name="l00768"></a><span class="lineno"> 768</span> <span class="comment">// write log file</span></div>
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|
<div class="line"><a id="l00769" name="l00769"></a><span class="lineno"> 769</span> <span class="keywordflow">if</span> (success && !chisq_only) {</div>
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|
<div class="line"><a id="l00770" name="l00770"></a><span class="lineno"> 770</span> <span class="keywordflow">if</span> (!fitter->IsScanOnly()) {</div>
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|
<div class="line"><a id="l00771" name="l00771"></a><span class="lineno"> 771</span> <a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a> = msrHandler->WriteMsrLogFile();</div>
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|
<div class="line"><a id="l00772" name="l00772"></a><span class="lineno"> 772</span> <span class="keywordflow">if</span> (<a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a> != <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>) {</div>
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|
<div class="line"><a id="l00773" name="l00773"></a><span class="lineno"> 773</span> <span class="keywordflow">switch</span> (<a class="code hl_variable" href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a>) {</div>
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|
<div class="line"><a id="l00774" name="l00774"></a><span class="lineno"> 774</span> <span class="keywordflow">case</span> <a class="code hl_define" href="PMusr_8h.html#a1dcd5ddf9b4345a744f7d07e6bbcac7b">PMUSR_MSR_LOG_FILE_WRITE_ERROR</a>:</div>
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|
<div class="line"><a id="l00775" name="l00775"></a><span class="lineno"> 775</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **ERROR** couldn't write mlog-file"</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00776" name="l00776"></a><span class="lineno"> 776</span> <span class="keywordflow">break</span>;</div>
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|
<div class="line"><a id="l00777" name="l00777"></a><span class="lineno"> 777</span> <span class="keywordflow">case</span> <a class="code hl_define" href="PMusr_8h.html#a27d509b44ff9de156010a39fea099fa2">PMUSR_TOKENIZE_ERROR</a>:</div>
|
|
<div class="line"><a id="l00778" name="l00778"></a><span class="lineno"> 778</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **ERROR** couldn't generate mlog-file name"</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00779" name="l00779"></a><span class="lineno"> 779</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00780" name="l00780"></a><span class="lineno"> 780</span> <span class="keywordflow">default</span>:</div>
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|
<div class="line"><a id="l00781" name="l00781"></a><span class="lineno"> 781</span> std::cout << std::endl << <span class="stringliteral">">> musrfit **UNKOWN ERROR** when trying to write the mlog-file"</span> << std::endl << std::endl;</div>
|
|
<div class="line"><a id="l00782" name="l00782"></a><span class="lineno"> 782</span> <span class="keywordflow">break</span>;</div>
|
|
<div class="line"><a id="l00783" name="l00783"></a><span class="lineno"> 783</span> }</div>
|
|
<div class="line"><a id="l00784" name="l00784"></a><span class="lineno"> 784</span> }</div>
|
|
<div class="line"><a id="l00785" name="l00785"></a><span class="lineno"> 785</span> }</div>
|
|
<div class="line"><a id="l00786" name="l00786"></a><span class="lineno"> 786</span> }</div>
|
|
<div class="line"><a id="l00787" name="l00787"></a><span class="lineno"> 787</span> </div>
|
|
<div class="line"><a id="l00788" name="l00788"></a><span class="lineno"> 788</span> <span class="comment">// check if dump is wanted</span></div>
|
|
<div class="line"><a id="l00789" name="l00789"></a><span class="lineno"> 789</span> <span class="keywordflow">if</span> (success && !dump.IsNull()) {</div>
|
|
<div class="line"><a id="l00790" name="l00790"></a><span class="lineno"> 790</span> std::cout << std::endl << <span class="stringliteral">"will write dump file ..."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00791" name="l00791"></a><span class="lineno"> 791</span> dump.ToLower();</div>
|
|
<div class="line"><a id="l00792" name="l00792"></a><span class="lineno"> 792</span> <span class="keywordflow">if</span> (dump.Contains(<span class="stringliteral">"ascii"</span>))</div>
|
|
<div class="line"><a id="l00793" name="l00793"></a><span class="lineno"> 793</span> <a class="code hl_function" href="musrfit_8cpp.html#ada536421802fb257a884611528e58f56">musrfit_dump_ascii</a>(filename, runListCollection.get());</div>
|
|
<div class="line"><a id="l00794" name="l00794"></a><span class="lineno"> 794</span> <span class="keywordflow">else</span> <span class="keywordflow">if</span> (dump.Contains(<span class="stringliteral">"root"</span>))</div>
|
|
<div class="line"><a id="l00795" name="l00795"></a><span class="lineno"> 795</span> <a class="code hl_function" href="musrfit_8cpp.html#a8ff7d1dfc98147cec7566b654e9e962b">musrfit_dump_root</a>(filename, runListCollection.get());</div>
|
|
<div class="line"><a id="l00796" name="l00796"></a><span class="lineno"> 796</span> <span class="keywordflow">else</span></div>
|
|
<div class="line"><a id="l00797" name="l00797"></a><span class="lineno"> 797</span> std::cout << std::endl << <span class="stringliteral">"do not know format "</span> << dump.Data() << <span class="stringliteral">", sorry :-| "</span> << std::endl;</div>
|
|
<div class="line"><a id="l00798" name="l00798"></a><span class="lineno"> 798</span> }</div>
|
|
<div class="line"><a id="l00799" name="l00799"></a><span class="lineno"> 799</span> </div>
|
|
<div class="line"><a id="l00800" name="l00800"></a><span class="lineno"> 800</span> <span class="comment">// rename MINUIT2.OUTPUT and MINUIT2.root file if wanted</span></div>
|
|
<div class="line"><a id="l00801" name="l00801"></a><span class="lineno"> 801</span> <span class="keywordflow">if</span> (success) {</div>
|
|
<div class="line"><a id="l00802" name="l00802"></a><span class="lineno"> 802</span> <span class="keywordflow">if</span> (keep_mn2_output && !chisq_only && !fitter->IsScanOnly()) {</div>
|
|
<div class="line"><a id="l00803" name="l00803"></a><span class="lineno"> 803</span> <span class="comment">// 1st rename MINUIT2.OUTPUT</span></div>
|
|
<div class="line"><a id="l00804" name="l00804"></a><span class="lineno"> 804</span> TString fln = TString(filename);</div>
|
|
<div class="line"><a id="l00805" name="l00805"></a><span class="lineno"> 805</span> <span class="keywordtype">char</span> ext[32];</div>
|
|
<div class="line"><a id="l00806" name="l00806"></a><span class="lineno"> 806</span> strcpy(ext, <span class="stringliteral">"-mn2.output"</span>);</div>
|
|
<div class="line"><a id="l00807" name="l00807"></a><span class="lineno"> 807</span> fln.ReplaceAll(<span class="stringliteral">".msr"</span>, 4, ext, strlen(ext));</div>
|
|
<div class="line"><a id="l00808" name="l00808"></a><span class="lineno"> 808</span> gSystem->CopyFile(<span class="stringliteral">"MINUIT2.OUTPUT"</span>, fln.Data(), kTRUE);</div>
|
|
<div class="line"><a id="l00809" name="l00809"></a><span class="lineno"> 809</span> </div>
|
|
<div class="line"><a id="l00810" name="l00810"></a><span class="lineno"> 810</span> <span class="comment">// 2nd rename MINUIT2.ROOT</span></div>
|
|
<div class="line"><a id="l00811" name="l00811"></a><span class="lineno"> 811</span> fln = TString(filename);</div>
|
|
<div class="line"><a id="l00812" name="l00812"></a><span class="lineno"> 812</span> strcpy(ext, <span class="stringliteral">"-mn2.root"</span>);</div>
|
|
<div class="line"><a id="l00813" name="l00813"></a><span class="lineno"> 813</span> fln.ReplaceAll(<span class="stringliteral">".msr"</span>, 4, ext, strlen(ext));</div>
|
|
<div class="line"><a id="l00814" name="l00814"></a><span class="lineno"> 814</span> gSystem->CopyFile(<span class="stringliteral">"MINUIT2.root"</span>, fln.Data(), kTRUE);</div>
|
|
<div class="line"><a id="l00815" name="l00815"></a><span class="lineno"> 815</span> }</div>
|
|
<div class="line"><a id="l00816" name="l00816"></a><span class="lineno"> 816</span> }</div>
|
|
<div class="line"><a id="l00817" name="l00817"></a><span class="lineno"> 817</span> </div>
|
|
<div class="line"><a id="l00818" name="l00818"></a><span class="lineno"> 818</span> <span class="keywordflow">if</span> (success) {</div>
|
|
<div class="line"><a id="l00819" name="l00819"></a><span class="lineno"> 819</span> <span class="keywordflow">if</span> (!chisq_only && !fitter->IsScanOnly()) {</div>
|
|
<div class="line"><a id="l00820" name="l00820"></a><span class="lineno"> 820</span> <span class="comment">// swap msr- and mlog-file</span></div>
|
|
<div class="line"><a id="l00821" name="l00821"></a><span class="lineno"> 821</span> std::cout << std::endl << <span class="stringliteral">">> swapping msr-, mlog-file ..."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00822" name="l00822"></a><span class="lineno"> 822</span> <span class="comment">// copy msr-file -> __temp.msr</span></div>
|
|
<div class="line"><a id="l00823" name="l00823"></a><span class="lineno"> 823</span> gSystem->CopyFile(filename, <span class="stringliteral">"__temp.msr"</span>, kTRUE);</div>
|
|
<div class="line"><a id="l00824" name="l00824"></a><span class="lineno"> 824</span> <span class="comment">// copy mlog-file -> msr-file</span></div>
|
|
<div class="line"><a id="l00825" name="l00825"></a><span class="lineno"> 825</span> TString fln = TString(filename);</div>
|
|
<div class="line"><a id="l00826" name="l00826"></a><span class="lineno"> 826</span> <span class="keywordtype">char</span> ext[32];</div>
|
|
<div class="line"><a id="l00827" name="l00827"></a><span class="lineno"> 827</span> strcpy(ext, <span class="stringliteral">".mlog"</span>);</div>
|
|
<div class="line"><a id="l00828" name="l00828"></a><span class="lineno"> 828</span> fln.ReplaceAll(<span class="stringliteral">".msr"</span>, 4, ext, strlen(ext));</div>
|
|
<div class="line"><a id="l00829" name="l00829"></a><span class="lineno"> 829</span> gSystem->CopyFile(fln.Data(), filename, kTRUE);</div>
|
|
<div class="line"><a id="l00830" name="l00830"></a><span class="lineno"> 830</span> <span class="comment">// copy __temp.msr -> mlog-file</span></div>
|
|
<div class="line"><a id="l00831" name="l00831"></a><span class="lineno"> 831</span> gSystem->CopyFile(<span class="stringliteral">"__temp.msr"</span>, fln.Data(), kTRUE);</div>
|
|
<div class="line"><a id="l00832" name="l00832"></a><span class="lineno"> 832</span> <span class="comment">// delete __temp.msr</span></div>
|
|
<div class="line"><a id="l00833" name="l00833"></a><span class="lineno"> 833</span> TSystemFile tmp(<span class="stringliteral">"__temp.msr"</span>, <span class="stringliteral">"./"</span>);</div>
|
|
<div class="line"><a id="l00834" name="l00834"></a><span class="lineno"> 834</span> tmp.Delete();</div>
|
|
<div class="line"><a id="l00835" name="l00835"></a><span class="lineno"> 835</span> }</div>
|
|
<div class="line"><a id="l00836" name="l00836"></a><span class="lineno"> 836</span> }</div>
|
|
<div class="line"><a id="l00837" name="l00837"></a><span class="lineno"> 837</span> </div>
|
|
<div class="line"><a id="l00838" name="l00838"></a><span class="lineno"> 838</span> <span class="keywordflow">if</span> (th && timeout_enabled) {</div>
|
|
<div class="line"><a id="l00839" name="l00839"></a><span class="lineno"> 839</span> th->Kill();</div>
|
|
<div class="line"><a id="l00840" name="l00840"></a><span class="lineno"> 840</span> }</div>
|
|
<div class="line"><a id="l00841" name="l00841"></a><span class="lineno"> 841</span> </div>
|
|
<div class="line"><a id="l00842" name="l00842"></a><span class="lineno"> 842</span> std::cout << std::endl << <span class="stringliteral">"done ..."</span> << std::endl;</div>
|
|
<div class="line"><a id="l00843" name="l00843"></a><span class="lineno"> 843</span> </div>
|
|
<div class="line"><a id="l00844" name="l00844"></a><span class="lineno"> 844</span> <span class="keywordflow">return</span> <a class="code hl_define" href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a>;</div>
|
|
<div class="line"><a id="l00845" name="l00845"></a><span class="lineno"> 845</span>}</div>
|
|
</div>
|
|
<div class="line"><a id="l00846" name="l00846"></a><span class="lineno"> 846</span> </div>
|
|
<div class="line"><a id="l00847" name="l00847"></a><span class="lineno"> 847</span><span class="comment">// end ---------------------------------------------------------------------</span></div>
|
|
<div class="line"><a id="l00848" name="l00848"></a><span class="lineno"> 848</span> </div>
|
|
<div class="ttc" id="aPFitter_8h_html"><div class="ttname"><a href="PFitter_8h.html">PFitter.h</a></div></div>
|
|
<div class="ttc" id="aPMsrHandler_8h_html"><div class="ttname"><a href="PMsrHandler_8h.html">PMsrHandler.h</a></div></div>
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|
<div class="ttc" id="aPMusr_8h_html"><div class="ttname"><a href="PMusr_8h.html">PMusr.h</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_a1dcd5ddf9b4345a744f7d07e6bbcac7b"><div class="ttname"><a href="PMusr_8h.html#a1dcd5ddf9b4345a744f7d07e6bbcac7b">PMUSR_MSR_LOG_FILE_WRITE_ERROR</a></div><div class="ttdeci">#define PMUSR_MSR_LOG_FILE_WRITE_ERROR</div><div class="ttdoc">Failed to write to MSR log file.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00067">PMusr.h:67</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_a27d509b44ff9de156010a39fea099fa2"><div class="ttname"><a href="PMusr_8h.html#a27d509b44ff9de156010a39fea099fa2">PMUSR_TOKENIZE_ERROR</a></div><div class="ttdeci">#define PMUSR_TOKENIZE_ERROR</div><div class="ttdoc">Error during tokenization/parsing of input.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00065">PMusr.h:65</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_a3168a2cda2474c28fe329358530331aba6d36a468d5cc6244a9c4b150e0b107a7"><div class="ttname"><a href="PMusr_8h.html#a3168a2cda2474c28fe329358530331aba6d36a468d5cc6244a9c4b150e0b107a7">kFit</a></div><div class="ttdeci">@ kFit</div><div class="ttdoc">Fitting mode - perform least-squares fit to data.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00415">PMusr.h:415</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_a3d787679eab8ebdac43868869b059d02"><div class="ttname"><a href="PMusr_8h.html#a3d787679eab8ebdac43868869b059d02">PMUSR_SUCCESS</a></div><div class="ttdeci">#define PMUSR_SUCCESS</div><div class="ttdoc">Successful operation completion.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00053">PMusr.h:53</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_a4073f6987fbfc4322a522b8d112520ae"><div class="ttname"><a href="PMusr_8h.html#a4073f6987fbfc4322a522b8d112520ae">PMsrRunList</a></div><div class="ttdeci">std::vector< PMsrRunBlock > PMsrRunList</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l01232">PMusr.h:1232</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_a5687f9a34804e32efa7bf54636201ff9"><div class="ttname"><a href="PMusr_8h.html#a5687f9a34804e32efa7bf54636201ff9">PMUSR_MSR_FILE_NOT_FOUND</a></div><div class="ttdeci">#define PMUSR_MSR_FILE_NOT_FOUND</div><div class="ttdoc">MSR file could not be found at specified path.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00059">PMusr.h:59</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_a8e2562ad47e71e264e858832bc4d3b14"><div class="ttname"><a href="PMusr_8h.html#a8e2562ad47e71e264e858832bc4d3b14">PMUSR_MSR_SYNTAX_ERROR</a></div><div class="ttdeci">#define PMUSR_MSR_SYNTAX_ERROR</div><div class="ttdoc">Syntax error detected in MSR file content.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00063">PMusr.h:63</a></div></div>
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<div class="ttc" id="aPMusr_8h_html_ae302f3aff725658e98498c2307e65d92"><div class="ttname"><a href="PMusr_8h.html#ae302f3aff725658e98498c2307e65d92">PMUSR_WRONG_STARTUP_SYNTAX</a></div><div class="ttdeci">#define PMUSR_WRONG_STARTUP_SYNTAX</div><div class="ttdoc">Incorrect startup command syntax provided.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00057">PMusr.h:57</a></div></div>
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<div class="ttc" id="aPRunDataHandler_8h_html"><div class="ttname"><a href="PRunDataHandler_8h.html">PRunDataHandler.h</a></div></div>
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<div class="ttc" id="aPRunListCollection_8h_html"><div class="ttname"><a href="PRunListCollection_8h.html">PRunListCollection.h</a></div></div>
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<div class="ttc" id="aPStartupHandler_8cpp_html_a14f38a2b207431cd74f276626988b0ea"><div class="ttname"><a href="PStartupHandler_8cpp.html#a14f38a2b207431cd74f276626988b0ea">startup_path_name</a></div><div class="ttdeci">const char * startup_path_name</div><div class="ttdef"><b>Definition</b> <a href="PStartupHandler_8cpp_source.html#l00083">PStartupHandler.cpp:84</a></div></div>
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<div class="ttc" id="aPStartupHandler_8cpp_html_a9611b3a00430a86619b5923de30f9fdb"><div class="ttname"><a href="PStartupHandler_8cpp.html#a9611b3a00430a86619b5923de30f9fdb">status</a></div><div class="ttdeci">return status</div><div class="ttdef"><b>Definition</b> <a href="PStartupHandler_8cpp_source.html#l00106">PStartupHandler.cpp:106</a></div></div>
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<div class="ttc" id="aPStartupHandler_8h_html"><div class="ttname"><a href="PStartupHandler_8h.html">PStartupHandler.h</a></div></div>
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<div class="ttc" id="aPStartupHandler_8h_html_a2f473e587e18e6a64b260870ec870a5e"><div class="ttname"><a href="PStartupHandler_8h.html#a2f473e587e18e6a64b260870ec870a5e">parseXmlFile</a></div><div class="ttdeci">int parseXmlFile(TSAXParser *, const char *)</div><div class="ttdoc">Replacement function for TSAXParser::ParseFile().</div></div>
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|
<div class="ttc" id="aclassPRawRunData_html"><div class="ttname"><a href="classPRawRunData.html">PRawRunData</a></div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00825">PMusr.h:825</a></div></div>
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<div class="ttc" id="aclassPRawRunData_html_ab245f670084572e1ad6d81f4f1f0486a"><div class="ttname"><a href="classPRawRunData.html#ab245f670084572e1ad6d81f4f1f0486a">PRawRunData::GetRunTitle</a></div><div class="ttdeci">virtual const TString * GetRunTitle()</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00845">PMusr.h:845</a></div></div>
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<div class="ttc" id="aclassPRunData_html"><div class="ttname"><a href="classPRunData.html">PRunData</a></div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00451">PMusr.h:451</a></div></div>
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<div class="ttc" id="aclassPRunData_html_a32bfd5c466faba8f720ba10fee1656af"><div class="ttname"><a href="classPRunData.html#a32bfd5c466faba8f720ba10fee1656af">PRunData::GetValue</a></div><div class="ttdeci">virtual const PDoubleVector * GetValue()</div><div class="ttdoc">Returns pointer to data value vector (asymmetry, counts, or y-data)</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00468">PMusr.h:468</a></div></div>
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<div class="ttc" id="aclassPRunData_html_a449a379e03e07d54112a30bef8f3fd6c"><div class="ttname"><a href="classPRunData.html#a449a379e03e07d54112a30bef8f3fd6c">PRunData::GetTheory</a></div><div class="ttdeci">virtual const PDoubleVector * GetTheory()</div><div class="ttdoc">Returns pointer to theory value vector.</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00474">PMusr.h:474</a></div></div>
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<div class="ttc" id="aclassPRunData_html_a525f9ef83e2e263bb05adb70a16f89d9"><div class="ttname"><a href="classPRunData.html#a525f9ef83e2e263bb05adb70a16f89d9">PRunData::GetDataTimeStep</a></div><div class="ttdeci">virtual Double_t GetDataTimeStep()</div><div class="ttdoc">Returns the time bin width for data in microseconds (μs)</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00459">PMusr.h:459</a></div></div>
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<div class="ttc" id="aclassPRunData_html_a821c4360542e0b6a0952e26cd70ef6ad"><div class="ttname"><a href="classPRunData.html#a821c4360542e0b6a0952e26cd70ef6ad">PRunData::GetError</a></div><div class="ttdeci">virtual const PDoubleVector * GetError()</div><div class="ttdoc">Returns pointer to data error vector (statistical uncertainties)</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00470">PMusr.h:470</a></div></div>
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<div class="ttc" id="aclassPRunData_html_a9c6d1dd9f6e248c9f0b2411d0d2a18bd"><div class="ttname"><a href="classPRunData.html#a9c6d1dd9f6e248c9f0b2411d0d2a18bd">PRunData::GetDataTimeStart</a></div><div class="ttdeci">virtual Double_t GetDataTimeStart()</div><div class="ttdoc">Returns the start time of the data set in microseconds (μs)</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l00457">PMusr.h:457</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html"><div class="ttname"><a href="classPRunListCollection.html">PRunListCollection</a></div><div class="ttdoc">Manager class for all processed μSR run data during fitting.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8h_source.html#l00140">PRunListCollection.h:141</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a111ba4d6cd8d5c61739f7b9eaeede819"><div class="ttname"><a href="classPRunListCollection.html#a111ba4d6cd8d5c61739f7b9eaeede819">PRunListCollection::GetSingleHisto</a></div><div class="ttdeci">virtual PRunData * GetSingleHisto(UInt_t index, EDataSwitch tag=kIndex)</div><div class="ttdoc">Retrieves processed data for a single histogram run.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8cpp_source.html#l00983">PRunListCollection.cpp:983</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a143c734e883f4010f7546c1c9369d174"><div class="ttname"><a href="classPRunListCollection.html#a143c734e883f4010f7546c1c9369d174">PRunListCollection::GetNoOfMuMinus</a></div><div class="ttdeci">virtual UInt_t GetNoOfMuMinus() const</div><div class="ttdoc">Returns the number of μ⁻ runs in the collection.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8h_source.html#l00484">PRunListCollection.h:484</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a1921131046c81cec12a53e1205566953"><div class="ttname"><a href="classPRunListCollection.html#a1921131046c81cec12a53e1205566953">PRunListCollection::GetNoOfSingleHisto</a></div><div class="ttdeci">virtual UInt_t GetNoOfSingleHisto() const</div><div class="ttdoc">Returns the number of single histogram runs in the collection.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8h_source.html#l00454">PRunListCollection.h:454</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a1d961b4efae4d1016c13abb66750ca99"><div class="ttname"><a href="classPRunListCollection.html#a1d961b4efae4d1016c13abb66750ca99">PRunListCollection::GetNoOfAsymmetryRRF</a></div><div class="ttdeci">virtual UInt_t GetNoOfAsymmetryRRF() const</div><div class="ttdoc">Returns the number of asymmetry RRF runs in the collection.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8h_source.html#l00472">PRunListCollection.h:472</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a2bccecd0186b6e7f7c3975dfec5386b5"><div class="ttname"><a href="classPRunListCollection.html#a2bccecd0186b6e7f7c3975dfec5386b5">PRunListCollection::GetSingleHistoRRF</a></div><div class="ttdeci">virtual PRunData * GetSingleHistoRRF(UInt_t index, EDataSwitch tag=kIndex)</div><div class="ttdoc">Retrieves processed data for a single histogram RRF run.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8cpp_source.html#l01026">PRunListCollection.cpp:1026</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a357670d57e6ddd1dc575a9e2a3bb321a"><div class="ttname"><a href="classPRunListCollection.html#a357670d57e6ddd1dc575a9e2a3bb321a">PRunListCollection::GetNonMusr</a></div><div class="ttdeci">virtual PRunData * GetNonMusr(UInt_t index, EDataSwitch tag=kIndex)</div><div class="ttdoc">Retrieves processed data for a non-μSR run.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8cpp_source.html#l01240">PRunListCollection.cpp:1240</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a7643b1f65b94ec022a47e5294a39009b"><div class="ttname"><a href="classPRunListCollection.html#a7643b1f65b94ec022a47e5294a39009b">PRunListCollection::GetAsymmetry</a></div><div class="ttdeci">virtual PRunData * GetAsymmetry(UInt_t index, EDataSwitch tag=kIndex)</div><div class="ttdoc">Retrieves processed data for an asymmetry run.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8cpp_source.html#l01069">PRunListCollection.cpp:1069</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a811c852a4fb6492a8070743a1181323a"><div class="ttname"><a href="classPRunListCollection.html#a811c852a4fb6492a8070743a1181323a">PRunListCollection::GetNoOfNonMusr</a></div><div class="ttdeci">virtual UInt_t GetNoOfNonMusr() const</div><div class="ttdoc">Returns the number of non-μSR runs in the collection.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8h_source.html#l00490">PRunListCollection.h:490</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_a85460ca0ee8a83ec4df01c27b77d8bd5"><div class="ttname"><a href="classPRunListCollection.html#a85460ca0ee8a83ec4df01c27b77d8bd5">PRunListCollection::GetNoOfAsymmetry</a></div><div class="ttdeci">virtual UInt_t GetNoOfAsymmetry() const</div><div class="ttdoc">Returns the number of asymmetry runs in the collection.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8h_source.html#l00466">PRunListCollection.h:466</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_aa10aaca772367fff8a34b9c4d5ef1217"><div class="ttname"><a href="classPRunListCollection.html#aa10aaca772367fff8a34b9c4d5ef1217">PRunListCollection::GetNoOfSingleHistoRRF</a></div><div class="ttdeci">virtual UInt_t GetNoOfSingleHistoRRF() const</div><div class="ttdoc">Returns the number of single histogram RRF runs in the collection.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8h_source.html#l00460">PRunListCollection.h:460</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_ad629977d3d291ea2b30260d143211172"><div class="ttname"><a href="classPRunListCollection.html#ad629977d3d291ea2b30260d143211172">PRunListCollection::GetMuMinus</a></div><div class="ttdeci">virtual PRunData * GetMuMinus(UInt_t index, EDataSwitch tag=kIndex)</div><div class="ttdoc">Retrieves processed data for a μ⁻ run.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8cpp_source.html#l01198">PRunListCollection.cpp:1198</a></div></div>
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<div class="ttc" id="aclassPRunListCollection_html_af0efb082b97defd1a07e7e63c75823cc"><div class="ttname"><a href="classPRunListCollection.html#af0efb082b97defd1a07e7e63c75823cc">PRunListCollection::GetAsymmetryRRF</a></div><div class="ttdeci">virtual PRunData * GetAsymmetryRRF(UInt_t index, EDataSwitch tag=kIndex)</div><div class="ttdoc">Retrieves processed data for an asymmetry RRF run.</div><div class="ttdef"><b>Definition</b> <a href="PRunListCollection_8cpp_source.html#l01155">PRunListCollection.cpp:1155</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_a0ddf1224851353fc92bfbff6f499fa97"><div class="ttname"><a href="musrfit_8cpp.html#a0ddf1224851353fc92bfbff6f499fa97">main</a></div><div class="ttdeci">int main(int argc, char *argv[])</div><div class="ttdef"><b>Definition</b> <a href="#l00444">musrfit.cpp:444</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_a28473bfc4ad2649e543b81dc04ec6c3b"><div class="ttname"><a href="musrfit_8cpp.html#a28473bfc4ad2649e543b81dc04ec6c3b">musrfit_write_ascii</a></div><div class="ttdeci">void musrfit_write_ascii(TString fln, PRunData *data, int runCounter)</div><div class="ttdef"><b>Definition</b> <a href="#l00151">musrfit.cpp:151</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_a493b57f443cc38b3d3df9c1e584d9d82"><div class="ttname"><a href="musrfit_8cpp.html#a493b57f443cc38b3d3df9c1e584d9d82">timeout</a></div><div class="ttdeci">static int timeout</div><div class="ttdef"><b>Definition</b> <a href="#l00071">musrfit.cpp:71</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_a82d0f397af9d67283cf3109a837e8361"><div class="ttname"><a href="musrfit_8cpp.html#a82d0f397af9d67283cf3109a837e8361">musrfit_timeout</a></div><div class="ttdeci">void * musrfit_timeout(void *args)</div><div class="ttdef"><b>Definition</b> <a href="#l00078">musrfit.cpp:78</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_a866ad67e737e5eab3027d1c0c11e3fdd"><div class="ttname"><a href="musrfit_8cpp.html#a866ad67e737e5eab3027d1c0c11e3fdd">musrfit_write_root</a></div><div class="ttdeci">void musrfit_write_root(TFile &f, TString fln, PRunData *data, int runCounter)</div><div class="ttdef"><b>Definition</b> <a href="#l00289">musrfit.cpp:289</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_a8ff7d1dfc98147cec7566b654e9e962b"><div class="ttname"><a href="musrfit_8cpp.html#a8ff7d1dfc98147cec7566b654e9e962b">musrfit_dump_root</a></div><div class="ttdeci">void musrfit_dump_root(char *fileName, PRunListCollection *runList)</div><div class="ttdef"><b>Definition</b> <a href="#l00334">musrfit.cpp:334</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_ada0e5255e2e1889947bab9469353374c"><div class="ttname"><a href="musrfit_8cpp.html#ada0e5255e2e1889947bab9469353374c">musrfit_syntax</a></div><div class="ttdeci">void musrfit_syntax()</div><div class="ttdef"><b>Definition</b> <a href="#l00095">musrfit.cpp:95</a></div></div>
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<div class="ttc" id="amusrfit_8cpp_html_ada536421802fb257a884611528e58f56"><div class="ttname"><a href="musrfit_8cpp.html#ada536421802fb257a884611528e58f56">musrfit_dump_ascii</a></div><div class="ttdeci">void musrfit_dump_ascii(char *fileName, PRunListCollection *runList)</div><div class="ttdef"><b>Definition</b> <a href="#l00191">musrfit.cpp:191</a></div></div>
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<div class="ttc" id="astructPStartupOptions_html"><div class="ttname"><a href="structPStartupOptions.html">PStartupOptions</a></div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l01365">PMusr.h:1365</a></div></div>
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<div class="ttc" id="astructPStartupOptions_html_a7f886ed1b86706196867dfb7bbd8bcc2"><div class="ttname"><a href="structPStartupOptions.html#a7f886ed1b86706196867dfb7bbd8bcc2">PStartupOptions::writeExpectedChisq</a></div><div class="ttdeci">Bool_t writeExpectedChisq</div><div class="ttdoc">if set to true, expected chisq and chisq per block will be written</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l01366">PMusr.h:1366</a></div></div>
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<div class="ttc" id="astructPStartupOptions_html_abbb6c9ca13071ffb51a87affd7df9f29"><div class="ttname"><a href="structPStartupOptions.html#abbb6c9ca13071ffb51a87affd7df9f29">PStartupOptions::estimateN0</a></div><div class="ttdeci">Bool_t estimateN0</div><div class="ttdoc">if set to true, for single histogram fits N0 will be estimated</div><div class="ttdef"><b>Definition</b> <a href="PMusr_8h_source.html#l01367">PMusr.h:1367</a></div></div>
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