#!/usr/bin/perl
# This scripts converts the parameters list in a musrfit input file
# into a table format.
# The strategy is first read the theory block to know how many
# shared parameters to expect, and then look for map lines to identify
# the non-shared parameters for each run, then go through the paramets list
# and finally spit everything out.
#
# Copyright (c) 2009 Zaher Salman (zaher.salman@psi.ch).

#TODO: Alpha, Backgrond and N0 lines are still not parsed

$NFile=1;
foreach $Arg (@ARGV) {
    open(MSRF,"<$Arg");
    @file=<MSRF>;
    close(MSRF);

# Reset some variables and arrays
    @Shared=();
    $newfile = "";
    $titles = "";
    $flag = 0;
    $NFITPARAMETERS=0;
    $NTHEORY=0;
    $NRUN=0;

# Remove comment lines
    @file = grep {!/^\#/} @file;
# Remove empty lines
    @file = grep {/\S/} @file;


# Identify different blocks
    $i=0;
    foreach $line (@file)
    {
	if (grep {/FITPARAMETER/} $line) {$NFITPARAMETERS=$i;}
	if (grep {/THEORY/} $line) { $NTHEORY=$i;} 
	if ((grep {/RUN/} $line) & $NRUN==0) { $NRUN=$i;} 
	$i++;
    }
    @FPBlock=@file[$NFITPARAMETERS+1..$NTHEORY-1];
    @TBlock=@file[$NTHEORY+1..$NRUN-1];

# Get shared parameters
    foreach $TLine (@TBlock) {
	# Then split it to find numbers of shared parameters
	@tmp=split(/\s+/,$TLine);
	foreach (@tmp) {
	    if ($_ eq $_+0 ) {
		# This is a number, keep it in the Shared arry
		@Shared=(@Shared,$_);
	    }
	}
    }

# Nice trick, make a hash for unique RUN lines
# Problem here if we have the same run fit twice (ranges etc)
    @MAPS = grep {/map /} @file;
    @RUNS = grep {/RUN/} @file;
    $counter=0;
#    for ($i=0;$i<=$#RUNS;$i++) {
#	$key=$RUNS[$i].$MAPS[$i];
#	$key =~ s/\s+//g;
    foreach $key (@RUNS){
	# This gets rid of duplicates
	$RUN{$key}=$counter;
	$MAP{$key}=$MAP{$key}.$MAPS[$counter];
	$counter++;
    } 



# Number of runs (or independent sets of parameters) in this file
    $NRuns=1;
    foreach (sort { $RUN{$a} <=> $RUN{$b}} keys %RUN ) {
	@RunParams=();
	$NP=0;
#	print $_."=".$MAP{$_}."\n";
	@tmp=split(/\s+/,$MAP{$_});
	# Remove first element (map)
	shift(@tmp);
	foreach (@tmp) {
	    if ($_ ne "" && $_>0 ) {
		@RunParams=(@RunParams,$_);
		$NP++;
	    }
	}
	if ($NP>0) {
	    $orders=join(",",@RunParams);
	    $RUNParams[$NRuns]=$orders;
	    $NRuns++;
	}
    }
    
# Split parameter's line to extract values and errors
    foreach $line (@FPBlock) {
	@Param=split(/\s+/,$line);
	# Create a hash with the parameter order as a key
	# and the value and error as value
	$P{$Param[1]}=$Param[3].",".$Param[4];
	$PName{$Param[1]}=$Param[2];
    }

# Now we have everything. Lets start ordering
    # First lines is names
    # Only for the first input file
    if ($NFile==1) {
	    @Pnum=split(/,/,$RUNParams[1]);
	    foreach (@Pnum,@Shared) {
		$DatFile=join("\t",$DatFile,$PName{$_},"d".$PName{$_});
	    }
	    $DatFile=$DatFile."\n";
    }

    # For the values from all the files.
    # I am not checking if all the files have the same theory function
    for ($i=1;$i<=$NRuns-1;$i++) {
#	print "RUN: ".$i." Params:".$RUNParams[$i]."\n";
	@Pnum=split(/,/,$RUNParams[$i]);
	# First go for the shared parameters
	foreach (@Pnum,@Shared) {
	    ($value,$err)=split(/,/,$P{$_});
	    $DatFile=join("\t",$DatFile,$value,$err);
	}
	$DatFile=$DatFile."\n";
    }

    # Go to the next file
    $NFile=$NFile+1;
}
print $DatFile;