#use strict; package MSR; # This module provides some tools to create, manipulate and extract information from MSR files my $EMPTY=""; my $SPACE=" "; my %DATADIRS = ( "LEM", "/afs/psi.ch/project/bulkmusr/data/lem", "GPS", "/afs/psi.ch/project/bulkmusr/data/gps", "LTF", "/afs/psi.ch/project/bulkmusr/data/ltf", "Dolly", "/afs/psi.ch/project/bulkmusr/data/dolly", "GPD", "/afs/psi.ch/project/bulkmusr/data/gpd", "HAL", "/afs/psi.ch/project/bulkmusr/data/hifi" ); my %BeamLines = ( "LEM", "MUE4", "LEM (PPC)", "MUE4", "GPS", "PIM3", "LTF", "PIM3", "Dolly", "PIE1", "GPD", "PIE1" , "HAL", "PIE3"); my %Def_Format = ( "LEM", "MUSR-ROOT", "LEM (PPC)", "ROOT-PPC", "GPS", "PSI-BIN", "LTF", "PSI-BIN", "Dolly", "PSI-BIN" , "GPD", "PSI-BIN", "HAL", "PSI-MDU"); # Additional information to extract run properties from database # For LEM use summary files my $SUMM_DIR="/afs/psi.ch/project/nemu/data/summ/"; # For Bulok use list files my %DBDIR=("LEM","/afs/psi.ch/project/nemu/data/log/", "GPS","/afs/psi.ch/project/bulkmusr/olddata/list/", "Dolly","/afs/psi.ch/project/bulkmusr/olddata/list/", "GPD","/afs/psi.ch/project/bulkmusr/olddata/list/", "ALC","/afs/psi.ch/project/bulkmusr/olddata/list/", "HAL","/afs/psi.ch/project/bulkmusr/olddata/list/", "LTF","/afs/psi.ch/project/bulkmusr/olddata/list/"); # Information available since my %MinYears=("LEM","2001", "GPS","1993", "Dolly","1998", "GPD","1993", "ALC","1993", "HAL","2012", "LTF","1995"); # And to deal with old names of bulk muons my %AltArea=("GPS","PIM3","LTF","PIM3","ALC","PIE3","Dolly","PIE1","GPD","MUE1"); # Additions to paremeters' names my $erradd = "d"; my $minadd = "_min"; my $maxadd = "_max"; sub CreateMSRUni { ########################################################################## # CreateMSRUni # # Input in %All # Required: # $All{"FitType1/2/3"} - Function types, 3 components # $All{"LRBF"} - Histograms, comma separated # $All{"Tis"} # $All{"Tfs"} # $All{"BINS"} # $All{"FILENAME"} # $All{"go"} # $All{"TITLE"} # $All{"RunNumbers"} # $All{"FitAsyType"} # $All{"BeamLine"} # $All{"YEAR"} # # Optional: # $All{"Sh_$Param"} # $All{"ltc"} # $All{"$Param"} value, error, min, and max # $All{"logx/y"} # $All{"Xi/f"} # # Output # $Full_T_Block - Full theory block # @Paramcomp - Space separated list of parameters for each component # FILENAME.msr - MSR file saved # ########################################################################## my %All = %{$_[0]}; my $DEBUG = ""; # Start with empty array my @FitTypes = (); foreach ($All{"FitType1"},$All{"FitType2"},$All{"FitType3"}) { if ($_ ne "None") { @FitTypes=(@FitTypes,$_); } } my @Hists = split( /,/, $All{"LRBF"} ); # TODO # : to separate two sets of asymmetries with same parameters # Check the number of histograms # should be 2 or 4 histograms # should be checked in GUI # for 2 simple asymmetry fit # for 4 two run blocks with different geometric parameters: # Alpha, No, NBg, Phi, Asy my @TiVals = split( /,/, $All{"Tis"} ); my @TfVals = split( /,/, $All{"Tfs"} ); my @BINVals = split( /,/, $All{"BINS"} ); my $FILENAME = $All{"FILENAME"}; my $BeamLine = $All{"BeamLine"}; my $YEAR = $All{"YEAR"}; my $FITMINTYPE = $EMPTY; if ( $All{"Minimization"} ne $EMPTY && $All{"ErrorCalc"} ne $EMPTY && $Step ne "PLOT" ) { $FITMINTYPE = $All{"Minimization"}."\n".$All{"ErrorCalc"}; } # First create the THEORY Block my ($Full_T_Block,$Paramcomp_ref)=MSR::CreateTheory(@FitTypes); my @Paramcomp = @$Paramcomp_ref; # If we have a FUNCTIONS Block the Full_T_Block should be # replaced by Func_T_Block my $FUNCTIONS_Block = $EMPTY; if ($All{"FunctionsBlock"} ne $EMPTY) { $FUNCTIONS_Block = "FUNCTIONS\n###############################################################\n".$All{"FunctionsBlock"}."\n"; $Full_T_Block=$All{"Func_T_Block"}; # remove all _N to end (may fail with large number of parameters) $Full_T_Block =~ s/_\d\b//g; } # Counter for RUNS my $iRun = 1; # Counter of Params my $PCount = 1; my $PLT = 2; # For SingleHist fit if ($All{"FitAsyType"} eq "SingleHist" ) { $PLT = 0;} # Need to select here RUNSAuto or RUNSManual # $RUNSType = 0 (Auto) or 1 (Manual) my $RUNSType = 0; my @RUNS=(); if ($All{"RunNumbers"} ne $EMPTY) { # Remove spaces and other illegal characters $All{"RunNumbers"} =~ s/[\ \.\~\/\&\*\[\;\>\<\^\$\(\)\`\|\]\'\@]/,/g; $All{"RunNumbers"} =~ s/[a-zA-Z]//g; # Expand hyphens and colons $All{"RunNumbers"} = MSR::ExpandRunNumbers($All{"RunNumbers"}); # Split commas @RUNS=split( /,/, $All{"RunNumbers"}); $RUNSType = 0; } elsif ($All{"RunFiles"} ne $EMPTY) { @RUNS=split( /,/, $All{"RunFiles"}); $RUNSType = 1; } # Initialise $shcount, a counter for shared parameters my $shcount = 1; my $RUN_Block = $EMPTY; my $RUNS_Line = $EMPTY; # range order my $Range_Order = 1; foreach my $RUN (@RUNS) { if ($All{"FitAsyType"} eq "Asymmetry" || $All{"FitAsyType"} eq "AsymmetryGLB") { # Prepare the Parameters and initial values block my $component = 0; my $Single_RUN = $EMPTY; # Prepare map line for each run my $MAP_Line = "map "; # How many non-shared parameter for this RUN? my $nonsh = 0; # Prepeare Alpha line for the RUN block. Empty initially. my $Alpha_Line = $EMPTY; # Loop over all components in the fit foreach my $FitType (@FitTypes) { ++$component; my $Parameters = $Paramcomp[ $component - 1 ]; my @Params = split( /\s+/, $Parameters ); # For the first component we need Alpha for Asymmetry fits if ($component == 1) { unshift( @Params, "Alpha" ); } foreach my $Param (@Params) { my $Param_ORG = $Param; if ( ($#FitTypes != 0) && ($Param ne "Alpha") ) { $Param = join( $EMPTY, $Param, "_", "$component" ); } # If we have only one RUN then everything is shared my $Shared = 0; if ( $#RUNS == 0 ) { $Shared = 1; } # Otherwise check input if it was marked as shared else { $Shared = $All{"Sh_$Param"}; } # Alpha Line # # If you encounter alpha in the parameters list make sure # to fill this line for the RUN block. if ( $Param_ORG eq "Alpha" ) { if ($Shared) { # If alpha is shared use always the same line $Alpha_Line = "alpha 1\n"; } else { # Otherwise modify alpha line accordingly $Alpha_Line = "alpha $PCount\n"; } } # End of Alpha Line # Start preparing the parameters block if ($Shared) { # Parameter is shared enough to keep order from first run if ( $iRun == 1 ) { $Full_T_Block =~ s/$Param_ORG/$PCount/; ++$shcount; ++$PCount; } } else { # Parameter is not shared, use map unless it is a single RUN fit # Skip adding to map line in these cases if ( ( $Param ne "Alpha" && $#RUNS != 0 ) || ( !( $Param_ORG =~ m/^(No|NBg)/ ) && $#RUNS != 0 )) { ++$nonsh; $Full_T_Block =~ s/$Param_ORG/map$nonsh/; $MAP_Line = join( ' ', $MAP_Line, $PCount ); } ++$PCount; } my $NtotPar = $PCount; } } # Finished preparing the FITPARAMETERS block # Start constructing RUN block here # For each defined range we need a block in the RUN-Block # Also for each histogram in Single Histograms fits $RUN = $RUNS[ $iRun - 1 ]; #$DEBUG = $DEBUG.MSR::CreateRUNBlk($RUN, $YEAR, $BeamLine, $All{"FitAsyType"}, $All{"LRBF"}, $All{"Tis"}, $All{"Tfs"}, $All{"BINS"}); my $RUN_Line = $EMPTY; if ($All{"RUNSType"}) { $RUN_Line = MSR::RUNFileNameAuto($RUN,"0000",$EMPTY); } else { $RUN_Line = MSR::RUNFileNameAuto($RUN,$YEAR,$BeamLine); } my $Type_Line = "fittype 2"; my $Hist_Lines = "forward $Hists[0]\nbackward $Hists[1]"; my $Bg_Line = "background"; my $Data_Line = "data"; my $T0_Line = "t0"; my $NHist=1; foreach my $Hist (@Hists) { # If empty skip lines if ($All{"Bg1$NHist"} ne $EMPTY && $All{"Bg2$NHist"} ne $EMPTY) { $Bg_Line = $Bg_Line." ".$All{"Bg1$NHist"}." ".$All{"Bg2$NHist"}; } if ($All{"Data1$NHist"} ne $EMPTY && $All{"Data2$NHist"} ne $EMPTY) { $Data_Line =$Data_Line." ".$All{"Data1$NHist"}." ".$All{"Data2$NHist"}; } if ($All{"t0$NHist"} ne $EMPTY) { $T0_Line=$T0_Line." ".$All{"t0$NHist"}; } $NHist++; } # Put T0_Line Bg_Line and Data_Line together if not empty my $T0DataBg=$EMPTY; if ($T0_Line ne "t0") { $T0DataBg = $T0DataBg.$T0_Line."\n"; } if ($Bg_Line ne "background") { $T0DataBg = $T0DataBg.$Bg_Line."\n"; } if ($Data_Line ne "data") { $T0DataBg = $T0DataBg.$Data_Line."\n"; } $FRANGE_Line = "fit TINI TFIN"; $PAC_Line = "packing BINNING"; $Single_RUN = "$RUN_Line\n$Type_Line\n$Alpha_Line$Hist_Lines\n$T0DataBg$MAP_Line\n$FRANGE_Line\n$PAC_Line\n\n"; # This is from CreateRUNBlk #$DEBUG =~s /T0LINE/$T0_Line/; #$DEBUG =~s /BGLINE/$Bg_Line/; #$DEBUG =~s /DATALINE/$Data_Line/; # Now add the appropriate values of fit range and packing my $Range_Min = 8; my $Range_Max = 0; my $k = 0; foreach my $Ti (@TiVals) { my $Tf = $TfVals[$k]; my $BIN = $BINVals[$k]; $RUN_Block = $RUN_Block . $Single_RUN; $RUN_Block =~ s/TINI/$Ti/g; $RUN_Block =~ s/TFIN/$Tf/g; $RUN_Block =~ s/BINNING/$BIN/g; # For multiple ranges use this if ( $Ti < $Range_Min ) { $Range_Min = $Ti; } if ( $Tf > $Range_Max ) { $Range_Max = $Tf; } $RUNS_Line = "$RUNS_Line " . $Range_Order; ++$k; ++$Range_Order; } } else { ####################################################################### # For a single histogram fit we basically need to repeat # this for each hist However, "physical" parameters such # as Asymmetry, relaxation etc. should be the same for all # histograms! # We distinguich between sharing among different runs to # common parameters for different histograms. The first is # done in the usual "Sharing" schame, while the second has # to be done in the functions block. This can be done in a # consistent, non-confusing algorithm # iHist is the histogram counter, used to catch Phi my $iHist = 1; foreach my $Hist (@Hists) { # Prepare the Parameters and initial values block my $component = 0; my $Single_RUN = $EMPTY; # Prepare map line for each run my $MAP_Line = "map "; # How many non-shared parameter for this RUN? my $nonsh = 0; # Prepeare No/NBg line for the RUN block. Empty initially. my $NoBg_Line = $EMPTY; # Loop over all components in the fit foreach my $FitType (@FitTypes) { ++$component; my $Parameters = $Paramcomp[ $component - 1 ]; my @Params = split( /\s+/, $Parameters ); # Only the first histiograms has new physical parameters # the others keep only Phi if they have it if ($iHist != 1 ) { # @Param contains only Phi if (grep(/Phi/,@Params)) { @Params=("Phi"); } else { @Params=(); } } # For the first component we need No and NBg for SingleHist fits if ( $component == 1 ) { unshift( @Params, ( "No", "NBg" ) ); } foreach my $Param (@Params) { my $Param_ORG = $Param; # Tag with histogram number only No, NBg and Phi if ($Param_ORG =~ m/^(No|NBg|Phi)/ ) {$Param=$Param.$Hist;} if ( ($#FitTypes != 0) && !( $Param_ORG =~ m/^(No|NBg)/ ) ) { $Param = join( $EMPTY, $Param, "_", "$component" ); } # If we have only one RUN with one Histogram then everything is shared my $Shared = 0; if ( $#RUNS == 0 && $#Hists == 0 ) { $Shared = 1; } else { # Otherwise check input if it was marked as shared $Shared = $All{"Sh_$Param"}; } # No and NBg Lines # # If you encounter No in the parameters list make sure # to fill this line for the RUN block. if ( $Param_ORG eq "No" ) { if ($Shared) { $NoBg_Line = "norm 1\n"; } else { $NoBg_Line = "norm $PCount\n"; } # Optional - add lifetime correction for SingleHist fits if ( $All{"ltc"} eq "y" ) { $NoBg_Line = $NoBg_Line . "lifetimecorrection\n"; } } # If you encounter NBg in the parameters list make sure # to fill this line for the RUN block. elsif ( $Param_ORG eq "NBg" ) { if ($Shared) { $NoBg_Line = $NoBg_Line . "backgr.fit 2\n"; } else { $NoBg_Line = $NoBg_Line . "backgr.fit $PCount\n"; } } # End of No and NBg Lines # Start preparing the parameters block if ((($Shared && $iRun == 1) || $#RUNS == 0) && $Param_ORG ne "Phi" ) { # Do not map a parameter if # - it is shared and this is the first run # - this is a single run fit # it is enough to keep order from first run $Full_T_Block =~ s/$Param_ORG/$PCount/; if ($Shared) {++$shcount;} ++$PCount; } else { # Parameter is not shared, use map unless it is a single RUN fit # Skip adding to map line in these cases # if ( !( $Param_ORG =~ m/^(No|NBg)/ ) && ($#RUNS != 0 || $#Hist != 0)) { if ( !( $Param_ORG =~ m/^(No|NBg)/ ) ) { $DEBUG = $DEBUG."# I am here: $Param_ORG\n"; ++$nonsh; $Full_T_Block =~ s/$Param_ORG/map$nonsh/; $MAP_Line = join( ' ', $MAP_Line, $PCount ); } ++$PCount; } $NtotPar = $PCount; } } # Finished preparing the FITPARAMETERS block # Start constructing RUN block here # For each defined range we need a block in the RUN-Block # Also for each histogram in Single Histograms fits $RUN = $RUNS[ $iRun - 1 ]; #$DEBUG = $DEBUG.MSR::CreateRUNBlk($RUN, $YEAR, $BeamLine, $All{"FitAsyType"}, $All{"LRBF"}, $All{"Tis"}, $All{"Tfs"}, $All{"BINS"}); if ($All{"RUNSType"}) { $RUN_Line = MSR::RUNFileNameAuto($RUN,"0000",$EMPTY); } else { $RUN_Line = MSR::RUNFileNameAuto($RUN,$YEAR,$BeamLine); } $Type_Line = "fittype 0"; $PLT = 0; $Hist_Lines = "forward HIST"; $Bg_Line = $EMPTY; $Data_Line = "data"; foreach ("t0","Bg1","Bg2","Data1","Data2") { $Name = "$_$Hist"; # If empty fill with defaults if ($All{$Name} eq $EMPTY) { $All{$Name}=MSR::T0BgData($_,$Hist,$BeamLine); } } $Bg_Line = $Bg_Line." ".$All{"Bg1$Hist"}." ".$All{"Bg2$Hist"}; $Data_Line =$Data_Line." ".$All{"Data1$Hist"}." ".$All{"Data2$Hist"}; if ($All{"t0$Hist"} ne $EMPTY) { $Data_Line=$Data_Line."\nt0 ".$All{"t0$Hist"}; } $FRANGE_Line = "fit TINI TFIN"; $PAC_Line = "packing BINNING"; $Single_RUN = $EMPTY; $Tmp_Hist_Line = $Hist_Lines; $Tmp_Hist_Line =~ s/HIST/$Hist/g; $Single_RUN = $Single_RUN . "$RUN_Line\n$Type_Line\n$NoBg_Line$Tmp_Hist_Line\n$Data_Line\n$MAP_Line\n$FRANGE_Line\n$PAC_Line\n\n"; # This is from CreateRUNBlk #$DEBUG =~s /T0LINE/$T0_Line/; #$DEBUG =~s /BGLINE/$Bg_Line/; #$DEBUG =~s /DATALINE/$Data_Line/; # Now add the appropriate values of fit range and packing my $Range_Min = 8; my $Range_Max = 0; my $k = 0; foreach my $Ti (@TiVals) { my $Tf = $TfVals[$k]; my $BIN = $BINVals[$k]; $RUN_Block = $RUN_Block . $Single_RUN; $RUN_Block =~ s/TINI/$Ti/g; $RUN_Block =~ s/TFIN/$Tf/g; $RUN_Block =~ s/BINNING/$BIN/g; # For multiple ranges use this if ( $Ti < $Range_Min ) { $Range_Min = $Ti; } if ( $Tf > $Range_Max ) { $Range_Max = $Tf; } $RUNS_Line = "$RUNS_Line " . $Range_Order; ++$k; ++$Range_Order; } ++$iHist; } } ++$iRun; } # The number of runs is $NRUNS = $iRun - 1; # Start constructing all blocks my $TitleLine = $All{"TITLE"}."\n# Run Numbers: ".$All{"RunNumbers"}; # Get parameter block from MSR::PrepParamTable(\%All); my $FitParaBlk = "FITPARAMETER ############################################################### # No Name Value Err Min Max "; my %PTable=MSR::PrepParamTable(\%All); my $NParam=scalar keys( %PTable ); # Fill the table with labels and values of parametr for (my $iP=0;$iP<$NParam;$iP++) { my ($Param,$value,$error,$minvalue,$maxvalue,$RUNtmp) = split(/,/,$PTable{$iP}); if ( $minvalue == $maxvalue ) { $minvalue = $EMPTY; $maxvalue = $EMPTY; } $PCount=$iP+1; $FitParaBlk = $FitParaBlk." $PCount $Param $value $error $error $minvalue $maxvalue"; } $Full_T_Block = "THEORY\n###############################################################\n$Full_T_Block\n"; # COMMAND Block $COMMANDS_Block = "COMMANDS\nFITMINTYPE\nSAVE\n"; $COMMANDS_Block =~ s/FITMINTYPE/$FITMINTYPE/g; # END- COMMAND Block # PLOT Block # Check if log x and log y are selected my $logxy = $EMPTY; if ( $All{"logx"} eq "y" ) { $logxy = $logxy . "logx\n"; } if ( $All{"logy"} eq "y" ) { $logxy = $logxy . "logy\n"; } # Check if a plot range is defined (i.e. different from fit) $PRANGE_Line = "use_fit_ranges"; if ( $All{"Xi"} != $All{"Xf"} ) { if ($All{"Yi"} != $All{"Yf"}) { $PRANGE_Line = "range ".$All{"Xi"}." ".$All{"Xf"}." ".$All{"Yi"}." ".$All{"Yf"}; } else { $PRANGE_Line = "range ".$All{"Xi"}." ".$All{"Xf"}; } } $VIEWBIN_Line =""; if ( $All{"ViewBin"}!=0 ) { $VIEWBIN_Line = "view_packing ".$All{"ViewBin"};} my $RRFBlock=MSR::CreateRRFBlk(\%All); $PLOT_Block = "PLOT $PLT\nruns $RUNS_Line\n$PRANGE_Line\n$VIEWBIN_Line\n$RRFBlock\n$logxy"; #END - PLOT Block # FFT Block my $FOURIER_Block = MSR::CreateFFTBlk(\%All); # END - FFT Block # STATS Block # Don't know why but it is needed initially my $STAT_Block = "STATISTIC --- 0000-00-00 00:00:00\n*** FIT DID NOT CONVERGE ***"; # END - STATS Block # Empty line at the end of each block my $FullMSRFile = "$TitleLine ############################################################### $FitParaBlk ############################################################### $Full_T_Block ############################################################### $FUNCTIONS_Block ############################################################### $RUN_Block ############################################################### $COMMANDS_Block ############################################################### $PLOT_Block ############################################################### $FOURIER_Block ############################################################### $STAT_Block\n"; # Return information and file return($Full_T_Block,\@Paramcomp,$FullMSRFile); } sub CreateMSRGLB { ########################################################################## # CreateMSRGLB # # Uses CreateMSR to produce a template and then msr2data to globalize it # # Input in %All # # Output # $Full_T_Block - Full theory block # @Paramcomp - Space separated list of parameters for each component # FILENAME.msr - MSR file saved # ########################################################################## my %All = %{$_[0]}; my @RUNS = (); if ($All{"RUNSType"}) { # Make sure this globalization is disabled if RunFiles are used @RUNS = split( /,/, $All{"RunFiles"} ); # Make example from first run $All{"RunFiles"}=$RUNS[0]; } else { @RUNS = split( /,/, MSR::ExpandRunNumbers($All{"RunNumbers"}) ); # Make example from first run $All{"RunNumbers"}=$RUNS[0]; } my ($Full_T_Block,$Paramcomp_ref,$MSRTemplate)= MSR::CreateMSRUni(\%All); # It is better to call msr2data here, but can we do that without writing to the disk? Not yet. # Return as usual my @Paramcomp = @$Paramcomp_ref; return($Full_T_Block,\@Paramcomp,$MSRTemplate); } sub CreateTheory { ######################## # CreateTheory ######################## # This subroutine requires: # @FitTypes - the array of the types of components (summed) # It will return: # $Full_T_Block - the full theory block with names of parameters # @Paramcomp - an array of space separated list of parameters # each member of the array is one component my (@FitTypes) = @_; # Start from this theory line for the different fitting functions my %THEORY = ( "asymmetry", "Asy", "simplExpo", "Lam", "generExpo", "Lam Bet", "simpleGss", "Sgm", "statGssKT", "Sgm", "statGssKTLF", "Frqg Sgm", "dynGssKTLF", "Frql Sgm Lam", "statExpKT", "Lam", "statExpKTLF", "Frq Aa", "dynExpKTLF", "Frq Aa Lam", "combiLGKT", "Del Sgm", "spinGlass", "Lam gam q", "rdAnisoHf", "Frq Lam", "TFieldCos", "Phi Frq", "internFld", "Alp Phi Frq LamT LamL", "Bessel", "Phi Frq", "internBsl", "Alp Phi Frq LamT LamL", "abragam", "Sgm gam", "Meissner", "Phi Energy Field DeadLayer Lambda", "skewedGss", "Phi Frq Sgmm Sgmp" ); ####################################################################### # Generate the full THEORY block my $Full_T_Block = $EMPTY; my $component = 0; foreach my $FitType (@FitTypes) { ++$component; # Add components if ( $component > 1 ) { $Full_T_Block = $Full_T_Block . "\n+\n"; } # For each component there is a THEORY block starting with "asymmetry" my $T_Block = "asymmetry " . $THEORY{'asymmetry'}; my $Parameters = $THEORY{'asymmetry'}; # Compose the THEORY block # The duplicate names are changed for multiplied signals or just # change names to match parameters list declared for the function # Stretch exponential if ( $FitType eq "Stretch" ) { $T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} ); } # Exponential elsif ( $FitType eq "Exponential" ) { $T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} ); } # Gaussian elsif ( $FitType eq "Gaussian" ) { $T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} ); } # Exponential with 0 relaxation elsif ( $FitType eq "Background" ) { # Do nothing } # Oscillationg exponential elsif ( $FitType eq "ExponentialCos" ) { $T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} ); $T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} ); } # Oscillationg gaussian elsif ( $FitType eq "GaussianCos" ) { $T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} ); $T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} ); } # Oscillationg stretch exponential elsif ( $FitType eq "StretchCos" ) { $T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} ); $T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} ); } # Oscillationg Gaussian elsif ( $FitType eq "GaussianCos" ) { $T_Block = $T_Block . "\n" . "simpelGss " . $THEORY{'simpelGss'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} ); $T_Block = $T_Block . "\n" . "TFieldCos " . $THEORY{'TFieldCos'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'TFieldCos'} ); } # Static Lorentzian KT elsif ( $FitType eq "SLKT" ) { $T_Block = $T_Block . "\n" . "statExpKT " . $THEORY{'statExpKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKT'} ); } # Static Lorentzian KT LF elsif ( $FitType eq "SLKTLF" ) { $T_Block = $T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} ); } # Dynamic Lorentzian KT LF elsif ( $FitType eq "LDKTLF" ) { $T_Block = $T_Block . "\n" . "dynExpKTLF " . $THEORY{'dynExpKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'dynExpKTLF'} ); } # Static Gaussian KT elsif ( $FitType eq "SGKT" ) { $T_Block = $T_Block . "\n" . "statGssKT " . $THEORY{'statGssKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKT'} ); } # Static Gaussian KT LF elsif ( $FitType eq "SGKTLF" ) { $T_Block = $T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} ); } # Dynamic Gaussian KT LF elsif ( $FitType eq "GDKTLF" ) { $T_Block = $T_Block . "\n" . "dynGssKTLF " . $THEORY{'dynGssKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'dynGssKTLF'} ); } # Static Lorentzian or Gaussian KF ZF elsif ( $FitType eq "LGKT" ) { $T_Block = $T_Block . "\n" . "combiLGKT " . $THEORY{'combiLGKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'combiLGKT'} ); } # Static Stretched KF ZF elsif ( $FitType eq "STRKT" ) { $T_Block = $T_Block . "\n" . "strKT " . $THEORY{'strKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'strKT'} ); } # Now some more combined functions (multiplication). # Lorentzian KT LF multiplied by exponential elsif ( $FitType eq "LLFExp" ) { $T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} ); $T_Block = $T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} ); } # Lorentzian KT LF multiplied by stretched exponential elsif ( $FitType eq "LLFSExp" ) { $T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} ); $T_Block = $T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} ); } # Gaussian KT LF multiplied by exponential elsif ( $FitType eq "GLFExp" ) { $T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} ); $T_Block = $T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} ); } # Gaussian KT LF multiplied by stretched exponential elsif ( $FitType eq "GLFSExp" ) { $T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} ); $T_Block = $T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} ); } # Lorentzian or Gaussian KT ZF multiplied by exponential elsif ( $FitType eq "LGKTExp" ) { $T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} ); $T_Block = $T_Block . "\n" . "combiLGKT " . $THEORY{'combiLGKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'combiLGKT'} ); } # Stretched KT ZF multiplied by exponential elsif ( $FitType eq "STRKTExp" ) { $T_Block = $T_Block . "\n" . "simplExpo " . $THEORY{'simplExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simplExpo'} ); $T_Block = $T_Block . "\n" . "strKT " . $THEORY{'strKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'strKT'} ); } # Lorentzian or Gaussian KT ZF multiplied by stretched exponential elsif ( $FitType eq "LGKTSExp" ) { $T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} ); $T_Block = $T_Block . "\n" . "combiLGKT " . $THEORY{'combiLGKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'combiLGKT'} ); } # Stretched KT ZF multiplied by stretched exponential elsif ( $FitType eq "STRKTSExp" ) { $T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} ); $T_Block = $T_Block . "\n" . "strKT " . $THEORY{'strKT'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'strKT'} ); } # Lorentzian or Gaussian KT LF multiplied by stretched exponential elsif ( $FitType eq "MolMag" ) { $T_Block = $T_Block . "\n" . "generExpo " . $THEORY{'generExpo'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'generExpo'} ); $T_Block = $T_Block . "\n" . "statExpKTLF " . $THEORY{'statExpKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statExpKTLF'} ); $T_Block = $T_Block . "\n" . "statGssKTLF " . $THEORY{'statGssKTLF'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'statGssKTLF'} ); } # Meissner state model elsif ( $FitType eq "Meissner" ) { $T_Block = $T_Block . "\n" . "simpleGss " . $THEORY{'simpleGss'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'simpleGss'} ); $T_Block = $T_Block . "\n" . "userFcn libTFitPofB.so TLondon1DHS " . $THEORY{'Meissner'}; $Parameters = join( $SPACE, $Parameters, $THEORY{'Meissner'} ); } $Paramcomp[ $component - 1 ] = $Parameters; $Full_T_Block = $Full_T_Block . $T_Block; # Finished preparing the THEORY block ####################################################################### } return($Full_T_Block,\@Paramcomp); } sub ExtractBlks { ######################## # ExtractBlks ######################## # This subroutine takes the MSR file as input and extracts the parameters # with the corresponding values, errors etc... # Take the msr file as input array of lines my @file=@_; my $NFITPARAMETERS=0; my $NTHEORY=0; my $NRUN=0; # Remove comment lines @file = grep {!/^\#/} @file; # Remove empty lines @file = grep {/\S/} @file; # Identify different blocks my $i=0; my $line =$EMPTY; foreach $line (@file) { if (grep {/FITPARAMETER/} $line) {$NFITPARAMETERS=$i;} if (grep {/THEORY/} $line) { $NTHEORY=$i;} if ((grep {/RUN/} $line) & $NRUN==0) { $NRUN=$i;} $i++; } my @FPBlock=@file[$NFITPARAMETERS+1..$NTHEORY-1]; my @TBlock=@file[$NTHEORY+1..$NRUN-1]; # Split parameter's line to extract values and errors foreach $line (@FPBlock) { my @Param=split(/\s+/,$line); } return(\@TBlock,\@FPBlock); } sub T0BgData { ######################## # T0BgData # Function return the defaul value of t0, Bg and Data bin # input should be # $Name is t0,Bg1,Bg2,Data1,Data2 # $Hist is the histogram number # $BeamLine in the name of beamline ######################## # Take this information as input arguments (my $Name, my $Hist, my $BeamLine) = @_; # These are the default values, ordered by beamline # Comma at the beginning means take default t0 from file # The order is pairs of "HistNumber","t0,Bg1,Bg2,Data1,Data2" my %LEM=("1",",66000,66500,3419,63000", "2",",66000,66500,3419,63000", "3",",66000,66500,3419,63000", "4",",66000,66500,3419,63000", "5",",66000,66500,3419,63000", "6",",66000,66500,3419,63000", "7",",66000,66500,3419,63000", "8",",66000,66500,3419,63000", "9",",66000,66500,3419,63000", "10",",66000,66500,3419,63000"); # my %GPS=("1",",40,120,135,8000", # "2",",40,120,135,8000", # "3",",40,120,135,8000", # "4",",40,120,135,8000"); # my %Dolly=("1",",50,250,297,8000", # "2",",50,250,297,8000", # "3",",50,250,297,8000", # "4",",50,250,297,8000"); my %RV=(); # If multiple histograms (sum or difference) take the first histogram only my @Hists=split(/ /,$Hist); if ($BeamLine eq "LEM") { my $HistParams=$LEM{$Hists[0]}; ($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams); } elsif ($BeamLine eq "Dolly") { my $HistParams=$Dolly{$Hists[0]}; ($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams); } elsif ($BeamLine eq "GPS") { my $HistParams=$GPS{$Hists[0]}; ($RV{"t0"},$RV{"Bg1"},$RV{"Bg2"},$RV{"Data1"},$RV{"Data2"})=split(/,/,$HistParams); } return $RV{$Name}; } sub PrepParamTable { ######################## # PrepParamTable # Function return a Hash with a table of parameters for the fit # input should be # %All # output is # hash of parameter table # %ParTable = PCount / $Param,$value,$error,$minvalue,$maxvalue,$RUN ######################## my $erradd = "d"; my $minadd = "_min"; my $maxadd = "_max"; # First assume nothing is shared my $Shared = 0; # Reset output Hash %ParTable = (); my %All = %{$_[0]}; my @RUNS = (); if ($All{"RUNSType"}) { @RUNS = split( /,/, $All{"RunFiles"} ); } else { # Remove spaces and other illegal characters $All{"RunNumbers"} =~ s/[\ \.\~\/\&\*\[\;\>\<\^\$\(\)\`\|\]\'\@]/,/g; $All{"RunNumbers"} =~ s/[a-zA-Z]//g; # Expand hyphens and colons $All{"RunNumbers"} = MSR::ExpandRunNumbers($All{"RunNumbers"}); # Split commas @RUNS=split( /,/, $All{"RunNumbers"}); } my @Hists = split( /,/, $All{"LRBF"} ); my @FitTypes =(); foreach my $FitType ($All{"FitType1"}, $All{"FitType2"}, $All{"FitType3"}) { if ( $FitType ne "None" ) { push( @FitTypes, $FitType ); } } # Get theory block to determine the size of the table my ($Full_T_Block,$Paramcomp_ref)= MSR::CreateTheory(@FitTypes); # For now the line below does not work. Why? # my $Paramcomp_ref=$All{"Paramcomp_ref"}; my @Paramcomp = @$Paramcomp_ref; my $Full_T_Block= $All{"Full_T_Block"}; my $PCount =0; my $iRun =0; my $value =0; my $error = 0; my $minvalue = 0; my $maxvalue = 0; my $Component=1; foreach my $RUN (@RUNS) { $iRun++; $Component=1; if ($All{"FitAsyType"} eq "Asymmetry" || $All{"FitAsyType"} eq "AsymmetryGLB") { foreach my $FitType (@FitTypes) { my $Parameters=$Paramcomp[$Component-1]; my @Params = split( /\s+/, $Parameters ); if ( $Component == 1 ) { unshift( @Params, "Alpha" ); } # This is the counter for parameters of this component my $NP=1; $Shared = 0; # Change state/label of parameters foreach my $Param (@Params) { my $Param_ORG = $Param; if ( $#FitTypes != 0 && ( $Param ne "Alpha" ) ){ $Param = join( $EMPTY, $Param, "_", "$Component" ); } $Shared = $All{"Sh_$Param"}; if ( $Shared!=1 || $iRun == 1 ) { # It there are multiple runs index the # parameters accordingly my $RUNtmp = sprintf("%04d",$RUN); if ($All{"RUNSType"}) { $RUNtmp = $iRun; } if ($Shared!=1) {$Param=$Param."_".$RUNtmp;} # Check if this parameter has been initialized # befor. If not take from defaults $value = $All{"$Param"}; if ( $value ne $EMPTY ) { $error = $All{"$erradd$Param"}; $minvalue = $All{"$Param$minadd"}; $maxvalue = $All{"$Param$maxadd"}; } else { # I need this although it is already in # the MSR.pm module, just for this table # We can remove it from the MSR module # later... Or keep in the MSR as function # ?? # We have two options here, either take # default values or take values of # previous run if available # $ParamPrev =~ s/$iRun-1/$iRun/g; $value = MSR::Defaults{$Param_ORG}; $error = MSR::Defaults{ join( $EMPTY, $erradd, $Param_ORG ) }; $minvalue = MSR::Defaults{ join($EMPTY, $Param_ORG, $minadd ) }; $maxvalue = MSR::Defaults{ join($EMPTY, $Param_ORG, $maxadd ) }; } $values=join(",",$Param,$value,$error,$minvalue,$maxvalue,$RUN); $ParTable{$PCount}=$values; $PCount++; } $NP++; } $Component++; } } else { # For a single histogram fit we basically need to repeat # this for each hist my $iHist = 1; foreach my $Hist (@Hists) { $Component=1; foreach my $FitType (@FitTypes) { my $Parameters=$Paramcomp[$Component-1]; my @Params = split( /\s+/, $Parameters ); # Only the first Hist gets new physical # parameters, the rest only Phi if present if ($iHist != 1 ) { # does @Param contains only Phi if (grep(/Phi/,@Params)) { @Params=("Phi"); } else { @Params=(); } } if ( $Component == 1 ) { unshift( @Params, ( "No", "NBg" ) ); } # This is the counter for parameters of this component my $NP=1; $Shared = 0; # Change state/label of parameters foreach my $Param (@Params) { my $Param_ORG = $Param; # If multiple histograms (sum or difference) # take the first histogram only ($Hist,$tmp) = split(/ /,$Hist); # Tag with histogram number only No, NBg and Phi if ($Param_ORG =~ m/^(No|NBg|Phi)/ ) {$Param=$Param.$Hist;} if ( $#FitTypes != 0 && ( $Param_ORG ne "No" && $Param_ORG ne "NBg" ) ){ $Param = join( $EMPTY, $Param, "_", "$Component" ); } $Shared = $All{"Sh_$Param"}; if ( $Shared!=1 || $iRun == 1 ) { # It there are multiple runs index the parameters accordingly my $RUNtmp=sprintf("%04d",$RUN); if ($Shared!=1) {$Param=$Param."_".$RUNtmp;} # Check if this parameter has been # initialized befor. If not take from # defaults $value = $All{"$Param"}; if ( $value ne $EMPTY ) { $error = $All{"$erradd$Param"}; $minvalue = $All{"$Param$minadd"}; $maxvalue = $All{"$Param$maxadd"}; } else { # I need this although it is already # in the MSR.pm module, just for this # table We can remove it from the MSR # module later... Or keep in the MSR # as function ?? $value = MSR::Defaults{$Param_ORG}; $error = MSR::Defaults{ join( $EMPTY, $erradd, $Param_ORG ) }; $minvalue = MSR::Defaults{ join($EMPTY, $Param_ORG, $minadd ) }; $maxvalue = MSR::Defaults{ join($EMPTY, $Param_ORG, $maxadd ) }; } $values=join(",",$Param,$value,$error,$minvalue,$maxvalue,$RUN); $ParTable{$PCount}=$values; $PCount++; } $NP++; } $Component++; } ++$iHist; } } } return %ParTable; } sub ExportParams { ######################## # ExportParams # Function return a tab separated table of parameters for the fit # input should be # %All # output is # $TABLE containing an ascii table of fit parameters ######################## my $erradd = "d"; my $minadd = "_min"; my $maxadd = "_max"; # First assume nothing is shared my $Shared = 0; my $TABLE=$EMPTY; my $HEADER="RUN"; my %All = %{$_[0]}; my @RUNS = (); if ($All{"RUNSType"}) { @RUNS = split( /,/, $All{"RunFiles"} ); } else { # Remove spaces and other illegal characters $All{"RunNumbers"} =~ s/[\ \.\~\/\&\*\[\;\>\<\^\$\(\)\`\|\]\'\@]/,/g; $All{"RunNumbers"} =~ s/[a-zA-Z]//g; # Expand hyphens and colons $All{"RunNumbers"} = MSR::ExpandRunNumbers($All{"RunNumbers"}); # Split commas @RUNS=split( /,/, $All{"RunNumbers"}); } my @Hists = split( /,/, $All{"LRBF"} ); my @FitTypes =(); foreach my $FitType ($All{"FitType1"}, $All{"FitType2"}, $All{"FitType3"}) { if ( $FitType ne "None" ) { push( @FitTypes, $FitType ); } } # Get theory block to determine the size of the table my ($Full_T_Block,$Paramcomp_ref)= MSR::CreateTheory(@FitTypes); # For now the line below does not work. Why? # my $Paramcomp_ref=$All{"Paramcomp_ref"}; my @Paramcomp = @$Paramcomp_ref; my $Full_T_Block= $All{"Full_T_Block"}; # Then loop over expected parameters and extract their values and # error bar my $PCount =0; my $iRun =0; my $value =0; my $error = 0; my $minvalue = 0; my $maxvalue = 0; my $Component=1; foreach my $RUN (@RUNS) { my $line="$RUN"; $iRun++; $Component=1; if ($All{"FitAsyType"} eq "Asymmetry") { foreach my $FitType (@FitTypes) { my $Parameters=$Paramcomp[$Component-1]; my @Params = split( /\s+/, $Parameters ); if ( $Component == 1 ) { unshift( @Params, "Alpha" ); } # This is the counter for parameters of this component my $NP=1; $Shared = 0; # Change state/label of parameters foreach my $Param (@Params) { my $Param_ORG = $Param; if ( $#FitTypes != 0 && ( $Param ne "Alpha" ) ){ $Param = join( $EMPTY, $Param, "_", "$Component" ); } # $All{"Header"} - 0/1 for with/without header if ($All{"Header"} && $iRun == 1) { $HEADER=join("\t",$HEADER,$Param,"$erradd$Param"); } $Shared = $All{"Sh_$Param"}; if ( $Shared!=1 || $iRun == 1 ) { # If there are multiple runs index the # parameters accordingly my $RUNtmp=sprintf("%04d",$RUN); if ($Shared!=1) {$Param=$Param."_".$RUNtmp;} # Check if this parameter has been initialized # befor. (should be) $value = $All{"$Param"}; $error = $All{"$erradd$Param"}; $line=join("\t",$line,$value,$error); $PCount++; } elsif ($Shared==1) { # The parameter is shared, take the value from # the first run $Param=$Param; $value = $All{"$Param"}; $error = $All{"$erradd$Param"}; $line=join("\t",$line,$value,$error); } $NP++; } $Component++; } } elsif ($All{"FitAsyType"} eq "SingleHist" ) { # For a single histogram fit we basically need to repeat # this for each hist foreach my $Hist (@Hists) { $Component=1; foreach my $FitType (@FitTypes) { my $Parameters=$Paramcomp[$Component-1]; my @Params = split( /\s+/, $Parameters ); if ( $Component == 1 ) { unshift( @Params, ( "No", "NBg" ) ); } # This is the counter for parameters of this # component my $NP=1; $Shared = 0; # Change state/label of parameters foreach my $Param (@Params) { my $Param_ORG = $Param; # Tag with histogram number only No, NBg and Phi if ($Param_ORG =~ m/^(No|NBg|Phi)/ ) {$Param=$Param.$Hist;} if ( $#FitTypes != 0 && ( $Param_ORG ne "No" && $Param_ORG ne "NBg" ) ){ $Param = join( $EMPTY, $Param, "_", "$Component" ); } $Shared = $All{"Sh_$Param"}; if ( $Shared!=1 || $iRun == 1 ) { # If there are multiple runs index the # parameters accordingly my $RUNtmp=sprintf("%04d",$RUN); if ($Shared!=1) {$Param=$Param."_".$RUNtmp;} # Check if this parameter has been # initialized befor. (should be) $value = $All{"$Param"}; $error = $All{"$erradd$Param"}; $minvalue = $All{"$Param$minadd"}; $maxvalue = $All{"$Param$maxadd"}; $values=join("\t",$Param,$value,$error,$minvalue,$maxvalue,$RUN); $ParTable{$PCount}=$values; $PCount++; } $NP++; } $Component++; } } } $TABLE=$TABLE."$line\n" } if ($All{"Header"}) { $TABLE=$HEADER."\n".$TABLE; } return $TABLE; } sub MSR2Dat { ######################## # MSR2Dat # Function return a tab separated table of parameters from an MSR file # input should be # @msrfile ######################## # Take the msr file as input array of lines my @file=@_; # Extract PRAMETERS and THEORY Blocks (my $TBlock_ref, my $FPBlock_ref)=MSR::ExtractBlks(@file); my @FPBlock = @$FPBlock_ref; my @TBlock = @$TBlock_ref; # Get shared parameters foreach $TLine (@TBlock) { # Then split it to find numbers of shared parameters @tmp=split(/\s+/,$TLine); foreach (@tmp) { if ($_ eq $_+0 ) { # This is a number, keep it in the Shared arry @Shared=(@Shared,$_); } } } # Nice trick, make a hash for unique RUN lines # Find spectrum lines my @MAPS = grep {/map /} @file; my @RUNS = grep {/RUN/} @file; my $counter=0; foreach $key (@RUNS){ # This gets rid of duplicates $RUN{$key}=$counter; $MAP{$key}=$MAPS[$counter]; $counter++; } # Number of runs (or independent sets of parameters) in this file my $NRuns=1; foreach (sort { $RUN{$a} <=> $RUN{$b}} keys %RUN ) { @RunParams=(); $NP=0; @tmp=split(/\s+/,$MAP{$_}); # Remove first element (map) shift(@tmp); foreach (@tmp) { if ($_ ne $EMPTY && $_>0 ) { @RunParams=(@RunParams,$_); $NP++; } } if ($NP>0) { $orders=join(",",@RunParams); $RUNParams[$NRuns]=$orders; $NRuns++; } } # Split parameter's line to extract values and errors foreach $line (@FPBlock) { @Param=split(/\s+/,$line); # Create a hash with the parameter order as a key # and the value and error as value $P{$Param[1]}=$Param[3].",".$Param[4]; $PName{$Param[1]}=$Param[2]; } # Now we have everything. Lets start ordering # First lines is names @Pnum=split(/,/,$RUNParams[1]); foreach (@Pnum,@Shared) { $DatFile=join("\t",$DatFile,$PName{$_},"d".$PName{$_}); } $DatFile=$DatFile."\n"; # For the values from all the files. # I am not checking if all the files have the same theory function for ($i=1;$i<=$NRuns-1;$i++) { @Pnum=split(/,/,$RUNParams[$i]); # First go for the shared parameters foreach (@Pnum,@Shared) { ($value,$err)=split(/,/,$P{$_}); $DatFile=join("\t",$DatFile,$value,$err); } $DatFile=$DatFile."\n"; } return $DatFile; } sub RUNFileNameAuto { ######################## # RUNFileNameAuto # Function return the RUN_Line for a given RUN # input should be # $RUN is the run number # $YEAR is the year # $BeamLine in the name of beamline ######################## # Take this information as input arguments (my $RUN, my $YEAR, my $BeamLine) = @_; my $RUN_Line=$EMPTY; # if BeamLine is empty assume manual name if ($BeamLine eq $EMPTY) { my %EXTs = ("root","MUSR-ROOT", "bin","PSI-BIN", "msr","MUD"); # Take this information as input arguments (my $RUN) = @_; my $EXT = $EMPTY; my $key = $EMPTY; # Find out the type of file (possibilities are root, bin and msr). foreach $key (keys %EXTs) { if (index($RUN,$key) != -1) { $EXT = $key; } } $RUN =~ s/\.[^.]+$//; $RUN_Line = join( $SPACE, "RUN", $RUN, "MUE4", "PSI",$EXTs{$EXT}); } else { my $DATADIR = $DATADIRS{$BeamLine}; my $RUNtmp=sprintf("%04d",$RUN); # Get current year my ( $sec, $min, $hour, $mday, $mon, $year, $wday, $yday, $isdst ) = localtime( time() ); my $current_year = $year + 1900; if ( $BeamLine eq "LEM" || $BeamLine eq "LEM (PPC)") { $RUN_File_Name = "lem" . substr( $YEAR, 2 ) . "_his_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name"; } elsif ( $BeamLine eq "GPS" ) { if ($YEAR >= 2008) { $RUN_File_Name = "deltat_tdc_gps_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name"; } else { $RUN_File_Name = "deltat_pta_gps_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/$RUN_File_Name"; } } elsif ( $BeamLine eq "LTF" ) { if ($YEAR >= 2009) { $RUN_File_Name = "deltat_tdc_ltf_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name"; } else { $RUN_File_Name = "deltat_pta_ltf_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/$RUN_File_Name"; } } elsif ( $BeamLine eq "Dolly" ) { if ($YEAR >= 2008) { $RUN_File_Name = "deltat_tdc_dolly_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name"; } else { $RUN_File_Name = "deltat_pta_dolly_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/$RUN_File_Name"; } } elsif ( $BeamLine eq "GPD" ) { if ($YEAR >= 2008) { $RUN_File_Name = "deltat_tdc_gpd_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name"; } else { $RUN_File_Name = "deltat_pta_gpd_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/$RUN_File_Name"; } } elsif ( $BeamLine eq "HAL" ) { $RUNtmp=sprintf("%05d",$RUNtmp); $RUN_File_Name = "tdc_hifi_" . $YEAR . "_" . $RUNtmp; $RUNFILE = "$DATADIR/d$YEAR/tdc/$RUN_File_Name"; } $RUN_Line = join( $SPACE, "RUN", $RUNFILE, $BeamLines{$BeamLine}, "PSI", $Def_Format{$BeamLine} ); } return $RUN_Line; } sub CreateRRFBlk { ######################## # CreateRRFBlk ######################## # This creates the RRF related lines, these are the same always my %All = %{$_[0]}; $RRFBlock=""; if ($All{"RRFFrq"}!= 0) { if ($All{"RRFPhase"} eq $EMPTY) {$All{"RRFPhase"}=0;} if ($All{"RRFPack"} eq $EMPTY) {$All{"RRFPack"}=1;} $RRFBlock="rrf_freq ".$All{"RRFFrq"}." ".$All{"RRFUnits"}."\n"; $RRFBlock=$RRFBlock."rrf_phase ".$All{"RRFPhase"}."\n"; $RRFBlock=$RRFBlock."rrf_packing ".$All{"RRFPack"}."\n"; } return $RRFBlock; } sub ExtractInfo { ######################## # ExtractInfo ######################## # Used to extract information from data file header. The header (using # "dump_header" is sent to this function from musrfit.cgi or MuSRFit my ($header,$Arg) = @_; my @lines = split(/\n/,$header); if ( $Arg eq "TITLE" ) { $RTRN_Val = $lines[3]; $RTRN_Val =~ s/\n//g; } elsif ( $Arg eq "Temp" ) { foreach my $line (@lines) { if ( $line =~ /Temp/ ) { ( my $tmp, my $T ) = split( /=/, $line ); ( $T, $tmp ) = split( /\(/, $T ); $RTRN_Val = $T; } } } elsif ( $Arg eq "Field" ) { foreach my $line (@lines) { if ( $line =~ /Mean B field/ ) { ( $tmp, my $B ) = split( /=/, $line ); ( $B, $tmp ) = split( /\(/, $B ); $RTRN_Val = $B; } } } elsif ( $Arg eq "Energy" ) { foreach my $line (@lines) { if ( $line =~ /implantation energy/ ) { ( my $tmp1, my $tmp2, my $E ) = split( /=/, $line ); ( $E, $tmp ) = split( /keV/, $E ); $RTRN_Val = $E; } } } # $RTRN_Val =~ s/[\.\~\/\&\*\[\;\>\<\^\$\(\)\`\|\]\'\@]//g; return $RTRN_Val; } sub ExtractInfoLEM { ######################## # ExtractInfoLEM ######################## # Uset to extract information from summary files my ($RUN,$YEAR,$Arg) = @_; # Use file header my $Summ_File_Name = "lem" . substr( $YEAR, 2 ) . "_" . $RUN . ".summ"; my $SummFile = "$SUMM_DIR/$YEAR/$Summ_File_Name"; open( SFILE,q{<}, "$SummFile" ); my @lines = ; close(SFILE); if ( $Arg eq "TITLE" ) { $RTRN_Val = $lines[3]; $RTRN_Val =~ s/\n//g; } elsif ( $Arg eq "Temp" ) { foreach my $line (@lines) { if ( $line =~ /Mean Sample_CF1/ ) { ( my $tmp, my $T ) = split( /=/, $line ); ( $T, $tmp ) = split( /\(/, $T ); $RTRN_Val = $T; } } } elsif ( $Arg eq "Field" ) { foreach my $line (@lines) { if ( $line =~ /Mean B field/ ) { ( $tmp, my $B ) = split( /=/, $line ); ( $B, $tmp ) = split( /\(/, $B ); $RTRN_Val = $B; } } } elsif ( $Arg eq "Energy" ) { foreach my $line (@lines) { if ( $line =~ /implantation energy/ ) { ( my $tmp1, my $tmp2, my $E ) = split( /=/, $line ); ( $E, $tmp ) = split( /keV/, $E ); $RTRN_Val = $E; } } } # $RTRN_Val =~ s/[\.\~\/\&\*\[\;\>\<\^\$\(\)\`\|\]\'\@]//g; return $RTRN_Val; } sub ExtractInfoBulk { # Uset to extract information from log files my ($RUN,$AREA,$YEAR,$Arg) = @_; my $RUNtmp=sprintf("%04d",$RUN); $RUN=$RUNtmp; # Information may be found in these file my $DBFILE=$DBDIR{$AREA}.$YEAR."/*.runs"; my @Lines =`cat $DBFILE`; # Select intries with the right area my $area=lc $AREA; my @Lines1 = grep { /$area/ } @Lines; my @Lines2 = grep { /$AltArea{$AREA}/ } @Lines; @Lines=(@Lines1,@Lines2); # Select intries with the right run number @Lines = grep { /$RUN/ } @Lines; @Words=split(/\s+/,$Lines[0]); if ( $Arg eq "TITLE" ) { $RTRN_Val = substr($Lines[0],104); } elsif ( $Arg eq "Temp" ) { $RTRN_Val = $Words[6]; } elsif ( $Arg eq "Field" ) { $RTRN_Val = $Words[7]; } return $RTRN_Val; } sub CreateRUNBlk { # Subroutine to create a clean run block (Not finished or used yet) # Take this information as input arguments my ($RUN,$YEAR,$BeamLine,$FitAsyType,$LRBF,$Ti,$Tf,$BIN) = @_; # $RUN is the run number # $YEAR is the corresponding year # $BeamLine is the corresponding beam line # $FitAsyType is SH or Asy # $LRBF are the histogram numbers # $Ti, $Tf and $BIN are the corresponding initial/final time range and binning factor respectively my $RUN_Block = "#RUN_LINE #fittype FIT_TYPE #ALPHA_LINE #HISTOLINES #MAP_LINE #T0LINE #BGLINE #DATALINE #fit TIVAL TFVAL #packing BINNING "; # HISTOLINES is the only thing that significantly changes between SH and Asy # Prepare the RUN_LINE my $RUN_Line = MSR::RUNFileNameAuto($RUN,$YEAR,$BeamLine); # Split the histograms my @Hists = split( /,/, $LRBF ); $Fit_Type = 0; if ($FitAsyType eq "Asymmetry" || $FitAsyType eq "AsymmetryGLB") { $Fit_Type = 2; } $RUN_Block =~ s/RUN_LINE/$RUN_Line/; $RUN_Block =~ s/FIT_TYPE/$Fit_Type/; $RUN_Block =~ s/TIVAL TFVAL/$Ti $Tf/; $RUN_Block =~ s/BINNING/$BIN/; my $HistLines = $EMPTY; my $Run_Block_ORG = $RUN_Block; $RUN_Block = $EMPTY; if ($Fit_Type == 2) { # Asymmetry fit $HistLines = "forward $Hists[0]\n#backward $Hists[1]"; $RUN_Block = $RUN_Block.$Run_Block_ORG."\n\n"; $RUN_Block =~ s/HISTOLINES/$HistLines/; } else { # Single histogram fit foreach my $Hist (@Hists) { $HistLines = "forward $Hist"; # Create multiple blocks with the same lines except for the histogram line $RUN_Block = $RUN_Block.$Run_Block_ORG."\n\n"; $RUN_Block =~ s/HISTOLINES/$HistLines/; } } return $RUN_Block; } sub CreateFFTBlk { my %All = %{$_[0]}; if ($All{"FUNITS"} eq $EMPTY) {$All{"FUNITS"}="MHz";} if ($All{"FAPODIZATION"} eq $EMPTY) {$All{"FAPODIZATION"}="STRONG";} if ($All{"FPLOT"} eq $EMPTY) {$All{"FPLOT"}="POWER";} if ($All{"FPHASE"} eq $EMPTY) {$All{"FPHASE"}="8.5";} my $FrqRange = $EMPTY; if ($All{"FRQMAX"} ne $EMPTY && $All{"FRQMIN"} ne $EMPTY && $All{"FRQMAX"} ne $All{"FRQMIN"}) { $FrqRange = "range ".$All{"FRQMIN"}." ".$All{"FRQMAX"}; } my $FOURIER_Block="FOURIER units FUNITS # units either 'Gauss', 'MHz', or 'Mc/s' fourier_power 12 apodization FAPODIZATION # NONE, WEAK, MEDIUM, STRONG plot FPLOT # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE phase FPHASE FRQRANGE"; $FOURIER_Block=~ s/FUNITS/$All{"FUNITS"}/g; $FOURIER_Block=~ s/FAPODIZATION/$All{"FAPODIZATION"}/g; $FOURIER_Block=~ s/FPLOT/$All{"FPLOT"}/g; $FOURIER_Block=~ s/FPHASE/$All{"FPHASE"}/g; $FOURIER_Block=~ s/FRQRANGE/$FrqRange/g; return $FOURIER_Block; } sub ExpandRunNumbers { # Subroutine to conver RunNumbers string into comma separated array # following the msr2data notations; hyphens denote from-to and a colon # denotes a loop with steps from:to:step my ($RunNumbers) = @_; # Split by commas @RUNS=split( /,/, $RunNumbers); # Find array members that include a hyphen (-) my @RUNseries = grep { /\-/ } @RUNS; foreach my $tmp (@RUNseries) { # Each item that includes a hyphen is expanded as from-to array my ($Begin,$End)=split('-',$tmp); my @Series = ($Begin..$End); # Join the expanded series using commas my $RunJoined = join(',',@Series); # Replace the original hyphens by the expanded series $RunNumbers =~ s/$tmp/$RunJoined/; } # Find array members that include a colon (:) my @RUNLoops = grep { /\:/ } @RUNS; foreach my $tmp (@RUNLoops) { # Each item that includes a colon is expanded as from:to:step array my ($Begin,$End,$Step)=split(':',$tmp); if ($Begin>$End) { # Swap $Begin and $End my $tmpBegin = $Begin; $Begin = $End; $End = $tmpBegin; } my @Series = (); for (my $i = $Begin; $i<=$End; $i += $Step) { push(@Series,$i); } # Join the expanded series using commas my $RunJoined = join(',',@Series); # Replace the original hyphens by the expanded series $RunNumbers =~ s/$tmp/$RunJoined/; } return $RunNumbers; } sub Defaults { ######################## # Defaults # Function return a default value of parameter # input should be # $Parameter # output is # $value ######################## # Take this information as input arguments # "Smart" default value of the fit parameters. my ($Param)=@_; my %Defaults = ( "Asy", "0.20", "dAsy", "0.01", "Asy_min", "0", "Asy_max", "0", "Alpha", "1.0", "dAlpha", "0.01", "Alpha_min", "0", "Alpha_max", "0", "No", "300.0", "dNo", "0.01", "No_min", "0", "No_max", "0", "NBg", "30.0", "dNBg", "0.01", "NBg_min", "0", "NBg_max", "0", "Lam", "1.0", "dLam", "0.01", "Lam_min", "0", "Lam_max", "0", "Gam", "1.0", "dGam", "0.01", "Gam_min", "0", "Gam_max", "0", "Bet", "0.5", "dBet", "0.01", "Bet_min", "0", "Bet_max", "0", "Two", "2.0", "dTwo", "0.0", "Two_min", "0", "Two_max", "0", "Del", "0.1", "dDel", "0.01", "Del_min", "0", "Del_max", "0", "Sgm", "0.1", "dSgm", "0.01", "Sgm_min", "0", "Sgm_max", "0", "Aa", "60.", "dAa", "0.01", "Aa_min", "0", "Aa_max", "0", "q", "0.1", "dq", "0.01", "q_min", "0", "q_max", "0", "Bg", "0.036", "dBg", "0.01", "Bg_min", "0", "Bg_max", "0", "bgrlx", "0.", "dbgrlx", "0.0", "bgrlx_min", "0", "bgrlx_max", "0", "Frq", "1.0", "dFrq", "1.", "Frq_min", "0", "Frq_max", "0", "Frql", "1.0", "dFrql", "1.", "Frql_min", "0", "Frql_max", "0", "Frqg", "1.0", "dFrqg", "1.", "Frqg_min", "0", "Frqg_max", "0", "Field", "100.0", "dField", "1.", "Field_min", "0", "Field_max", "0", "Energy", "14.1", "dEnergy", "0.", "Energy_min", "0", "Energy_max", "0", "DeadLayer", "10.", "dDeadLayer", "0.1", "DeadLayer_min", "0", "DeadLayer_max", "0", "Lambda", "128.1", "dLambda", "0.1", "Lambda_min", "0", "Lambda_max", "0", "Phi", "1.", "dPhi", "0.01", "Phi_min", "0", "Phi_max", "0" ); return $Defaults{$Param}; } 1;