modernize the way how to check/deal with OpenMP. This helps also on the macOS side.

Master

Approved-by: Andreas Suter

CMakeLists.txt

@@ -1,7 +1,7 @@
 # - musrfit
 cmake_minimum_required(VERSION 3.17)
 
-project(musrfit VERSION 1.9.0 LANGUAGES C CXX)
+project(musrfit VERSION 1.9.3 LANGUAGES C CXX)
 
 #--- musrfit specific options -------------------------------------------------
 option(nexus "build optional NeXus support. Needed for ISIS" OFF)
@@ -109,13 +109,13 @@ find_package(FFTW3 REQUIRED)
 find_package(LibXml2 REQUIRED)
 
 #--- check for OpenMP ---------------------------------------------------------
-if (try_OpenMP AND NOT APPLE)
+if (try_OpenMP)
   find_package(OpenMP)
-  if (OpenMP_FOUND)
+  if (OpenMP_CXX_FOUND)
     add_definitions(-DHAVE_GOMP)
     set(HAVE_GOMP 1 CACHE INTERNAL "Have GOMP")
-  endif (OpenMP_FOUND)
+  endif (OpenMP_CXX_FOUND)
-endif (try_OpenMP AND NOT APPLE)
+endif (try_OpenMP)
 
 #--- check for Qt -------------------------------------------------------------
 if (qt_based_tools)
@@ -222,6 +222,29 @@ else ()
   set(IS_GIT_REPO 0)
 endif ()
 
+#--- rpath related things -----------------------------------------------------
+# use, i.e. don't skip the full RPATH for the build tree
+set(CMAKE_SKIP_BUILD_RPATH FALSE)
+
+# when building, don't use the install RPATH already
+# (but later on when installing)
+set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
+
+set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
+
+# add the automatically determined parts of the RPATH
+# which point to directories outside the build tree to the install RPATH
+set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
+
+# the RPATH to be used when installing, but only if it's not a system directory
+list(FIND CMAKE_PLATFORM_IMPLICIT_LINK_DIRECTORIES "${CMAKE_INSTALL_PREFIX}/lib" isSystemDir)
+if("${isSystemDir}" STREQUAL "-1")
+    set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/lib")
+endif("${isSystemDir}" STREQUAL "-1")
+set(rpath ${CMAKE_INSTALL_RPATH})
+string(APPEND rpath ";/usr/local/lib")
+set(CMAKE_INSTALL_RPATH "${rpath}")
+
 #--- propagate to the sub-directories -----------------------------------------
 add_subdirectory(src)
 

ChangeLog

@@ -12,6 +12,23 @@ or
 
 https://bitbucket.org/muonspin/musrfit/commits/all
 
+Release of V1.9.3, 2024/04/19
+=============================
+
+fix of function string generation from AST.
+
+Release of V1.9.2, 2023/10/25
+=============================
+
+switch over to smart pointers wherever possible.
+
+Release of V1.9.1, 2023/05/16
+=============================
+
+add option [-c, --count] to dump_header which will dump the number of counts
+per detector and the total number of counts. Currently for MusrRoot data format
+only. For the other data formats it will be implement asap
+
 Release of V1.9.0, 2023/02/17
 =============================
 

README.md

@@ -32,7 +32,6 @@ For a more exhaustive user documentation see:
 
 <andreas.suter@psi.ch>
 
-For the beta-NMR related parts, please contact
+For the beta-NMR related parts, please contact Zaher Salman
-
 <zaher.salman@psi.ch>
 

cmake/FindFFTW3.cmake

@@ -75,7 +75,7 @@ endfunction()
 #as35 endif()
 
 find_path(FFTW3_INCLUDE NAMES fftw3.h
-  HINTS "/usr/include" "/opt/local/include"
+  HINTS "/usr/include" "/opt/local/include" "/app/include"
 )
 
 find_library(FFTW3_LIBRARY fftw3)

doc/examples/DepthProfiles/1300Ar/depth_profile_startup.xml

@@ -1,35 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<nonlocal xmlns="http://nemu.web.psi.ch/musrfit/nonlocal">
+<depthProf xmlns="http://nemu.web.psi.ch/musrfit/depthProf">
     <comment>
         TrimSp information
     </comment>
     <trim_sp>
         <data_path>./TRIMSP/</data_path>
         <rge_fln_pre>SiC_1300x_52nm_48nm_E</rge_fln_pre>
-        <energy_list>
+        <energy_vect start="1000" stop="22000" step="1000"/>
-            <energy>1000</energy>
-            <energy>2000</energy>
-            <energy>3000</energy>
-            <energy>4000</energy>
-            <energy>5000</energy>
-            <energy>6000</energy>
-            <energy>7000</energy>
-            <energy>8000</energy>
-            <energy>9000</energy>
-            <energy>10000</energy>
-            <energy>11000</energy>
-            <energy>12000</energy>
-            <energy>13000</energy>
-            <energy>14000</energy>
-            <energy>15000</energy>
-            <energy>16000</energy>
-            <energy>17000</energy>
-            <energy>17000</energy>
-            <energy>18000</energy>
-            <energy>19000</energy>
-            <energy>20000</energy>
-            <energy>21000</energy>
-            <energy>22000</energy>
-        </energy_list>
     </trim_sp>
-</nonlocal>
+</depthProf>

doc/examples/DepthProfiles/1300x/depth_profile_startup.xml

@@ -1,35 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<nonlocal xmlns="http://nemu.web.psi.ch/musrfit/nonlocal">
+<depthProf xmlns="http://nemu.web.psi.ch/musrfit/depthProf">
     <comment>
         TrimSp information
     </comment>
     <trim_sp>
         <data_path>./TRIMSP/</data_path>
         <rge_fln_pre>SiC_1300x_52nm_48nm_E</rge_fln_pre>
-        <energy_list>
+        <energy_vect start="1000" stop="22000" step="1000"/>
-            <energy>1000</energy>
-            <energy>2000</energy>
-            <energy>3000</energy>
-            <energy>4000</energy>
-            <energy>5000</energy>
-            <energy>6000</energy>
-            <energy>7000</energy>
-            <energy>8000</energy>
-            <energy>9000</energy>
-            <energy>10000</energy>
-            <energy>11000</energy>
-            <energy>12000</energy>
-            <energy>13000</energy>
-            <energy>14000</energy>
-            <energy>15000</energy>
-            <energy>16000</energy>
-            <energy>17000</energy>
-            <energy>17000</energy>
-            <energy>18000</energy>
-            <energy>19000</energy>
-            <energy>20000</energy>
-            <energy>21000</energy>
-            <energy>22000</energy>
-        </energy_list>
     </trim_sp>
-</nonlocal>
+</depthProf>

doc/examples/DepthProfiles/PECVD_Si/depth_profile_startup.xml

@@ -1,35 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<nonlocal xmlns="http://nemu.web.psi.ch/musrfit/nonlocal">
+<depthProf xmlns="http://nemu.web.psi.ch/musrfit/depthProf">
     <comment>
         TrimSp information
     </comment>
     <trim_sp>
         <data_path>./TRIMSP/</data_path>
         <rge_fln_pre>Si10_2.0_E</rge_fln_pre>
-        <energy_list>
+        <energy_vect start="1000" stop="22000" step="1000"/>
-            <energy>1000</energy>
-            <energy>2000</energy>
-            <energy>3000</energy>
-            <energy>4000</energy>
-            <energy>5000</energy>
-            <energy>6000</energy>
-            <energy>7000</energy>
-            <energy>8000</energy>
-            <energy>9000</energy>
-            <energy>10000</energy>
-            <energy>11000</energy>
-            <energy>12000</energy>
-            <energy>13000</energy>
-            <energy>14000</energy>
-            <energy>15000</energy>
-            <energy>16000</energy>
-            <energy>17000</energy>
-            <energy>17000</energy>
-            <energy>18000</energy>
-            <energy>19000</energy>
-            <energy>20000</energy>
-            <energy>21000</energy>
-            <energy>22000</energy>
-        </energy_list>
     </trim_sp>
-</nonlocal>
+</depthProf>

doc/examples/DepthProfiles/PECVD_thermal_SiC/depth_profile_startup.xml

@@ -1,35 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<nonlocal xmlns="http://nemu.web.psi.ch/musrfit/nonlocal">
+<depthProf xmlns="http://nemu.web.psi.ch/musrfit/depthProf">
     <comment>
         TrimSp information
     </comment>
     <trim_sp>
         <data_path>./TRIMSP/</data_path>
         <rge_fln_pre>SiO2_70nm2.0_30nm2.2_SiC_E</rge_fln_pre>
-        <energy_list>
+        <energy_vect start="1000" stop="22000" step="1000"/>
-            <energy>1000</energy>
-            <energy>2000</energy>
-            <energy>3000</energy>
-            <energy>4000</energy>
-            <energy>5000</energy>
-            <energy>6000</energy>
-            <energy>7000</energy>
-            <energy>8000</energy>
-            <energy>9000</energy>
-            <energy>10000</energy>
-            <energy>11000</energy>
-            <energy>12000</energy>
-            <energy>13000</energy>
-            <energy>14000</energy>
-            <energy>15000</energy>
-            <energy>16000</energy>
-            <energy>17000</energy>
-            <energy>17000</energy>
-            <energy>18000</energy>
-            <energy>19000</energy>
-            <energy>20000</energy>
-            <energy>21000</energy>
-            <energy>22000</energy>
-        </energy_list>
     </trim_sp>
-</nonlocal>
+</depthProf>

doc/examples/UserFcn/PUserFcn.cpp

@@ -8,7 +8,7 @@
 ***************************************************************************/
 
 /***************************************************************************
- *   Copyright (C) 2007-2023 by Andreas Suter                              *
+ *   Copyright (C) 2007-2024 by Andreas Suter                              *
  *   andreas.suter@psi.ch                                                  *
  *                                                                         *
  *   This program is free software; you can redistribute it and/or modify  *

doc/html/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 429dcaf60d751fc64b55c07d7174ea6f
+config: 28c8d31b3d0d7429fcebb7bd0074bdd3
 tags: 645f666f9bcd5a90fca523b33c5a78b7

doc/html/_static/documentation_options.js

@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.8.2',
+    VERSION: '1.9.3',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

doc/html/_static/haiku.css

@@ -1,376 +0,0 @@
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- *
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- * Original copyright message:
- *
- *     Copyright 2008-2009, Haiku. All rights reserved.
- *     Distributed under the terms of the MIT License.
- *
- *     Authors:
- *              Francois Revol <revol@free.fr>
- *              Stephan Assmus <superstippi@gmx.de>
- *              Braden Ewing <brewin@gmail.com>
- *              Humdinger <humdingerb@gmail.com>
- *
- * :copyright: Copyright 2007-2018 by the Sphinx team, see AUTHORS.
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- *
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doc/html/_static/style.css

@@ -0,0 +1,5 @@
+/* dynamic content width, see https://stackoverflow.com/questions/23211695/modifying-content-width-of-the-sphinx-theme-read-the-docs */
+
+.wy-nav-content {
+    max-width: none;
+}

doc/html/acknowledgement.html

@@ -8,7 +8,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Acknowledgements &mdash; musrfit 1.8.2 documentation</title>
+  <title>Acknowledgements &mdash; musrfit 1.9.3 documentation</title>
   
 
   
@@ -30,7 +30,9 @@
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Bugtracking" href="bugtracking.html" />
-    <link rel="prev" title="MusrRoot - an Extensible Open File Format for μSR" href="musr-root.html" /> 
+    <link rel="prev" title="MusrRoot - an Extensible Open File Format for μSR" href="musr-root.html" />
+    <link href="_static/style.css" rel="stylesheet" type="text/css">
+
 
   
   <script src="_static/js/modernizr.min.js"></script>
@@ -58,6 +60,10 @@
           
             
             
+              <div class="version">
+                1.9
+              </div>
+            
           
 
           
@@ -90,6 +96,7 @@
 <li class="toctree-l1"><a class="reference internal" href="mupp.html">mupp - μSR Parameter Plotter</a></li>
 <li class="toctree-l1"><a class="reference internal" href="msr2data.html">msr2data - A Program for Automatically Processing Multiple <code class="docutils literal notranslate"><span class="pre">musrfit</span></code> msr Files</a></li>
 <li class="toctree-l1"><a class="reference internal" href="any2many.html">any2many - a Universal μSR-file-format converter</a></li>
+<li class="toctree-l1"><a class="reference internal" href="file-formats.html">Short description and references to the supported file-formats</a></li>
 <li class="toctree-l1"><a class="reference internal" href="musr-root.html">MusrRoot - an Extensible Open File Format for μSR</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">Acknowledgements</a></li>
 <li class="toctree-l1"><a class="reference internal" href="bugtracking.html">Bugtracking</a></li>
@@ -193,8 +200,8 @@ extremely competent way to deal with his projects as well as to deal with the ch
 
   <div role="contentinfo">
     <p>
-        &copy; Copyright 2022, Andreas Suter.
+        &copy; Copyright 2023, Andreas Suter.
-      Last updated on Dec 12, 2022.
+      Last updated on Apr 23, 2024.
 
     </p>
   </div>
@@ -216,7 +223,7 @@ extremely competent way to deal with his projects as well as to deal with the ch
     <script type="text/javascript">
         var DOCUMENTATION_OPTIONS = {
             URL_ROOT:'./',
-            VERSION:'1.8.2',
+            VERSION:'1.9.3',
             LANGUAGE:'None',
             COLLAPSE_INDEX:false,
             FILE_SUFFIX:'.html',

doc/html/any2many.html

@@ -8,7 +8,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>any2many - a Universal μSR-file-format converter &mdash; musrfit 1.8.2 documentation</title>
+  <title>any2many - a Universal μSR-file-format converter &mdash; musrfit 1.9.3 documentation</title>
   
 
   
@@ -29,8 +29,10 @@
   <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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@@ -58,6 +60,10 @@
           
             
             
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@@ -90,6 +96,7 @@
 <li class="toctree-l1"><a class="reference internal" href="mupp.html">mupp - μSR Parameter Plotter</a></li>
 <li class="toctree-l1"><a class="reference internal" href="msr2data.html">msr2data - A Program for Automatically Processing Multiple <code class="docutils literal notranslate"><span class="pre">musrfit</span></code> msr Files</a></li>
 <li class="toctree-l1 current"><a class="current reference internal" href="#">any2many - a Universal μSR-file-format converter</a></li>
+<li class="toctree-l1"><a class="reference internal" href="file-formats.html">Short description and references to the supported file-formats</a></li>
 <li class="toctree-l1"><a class="reference internal" href="musr-root.html">MusrRoot - an Extensible Open File Format for μSR</a></li>
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+        &copy; Copyright 2023, Andreas Suter.
-      Last updated on Dec 12, 2022.
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@@ -89,6 +95,7 @@
 <li class="toctree-l1"><a class="reference internal" href="mupp.html">mupp - μSR Parameter Plotter</a></li>
 <li class="toctree-l1"><a class="reference internal" href="msr2data.html">msr2data - A Program for Automatically Processing Multiple <code class="docutils literal notranslate"><span class="pre">musrfit</span></code> msr Files</a></li>
 <li class="toctree-l1"><a class="reference internal" href="any2many.html">any2many - a Universal μSR-file-format converter</a></li>
+<li class="toctree-l1"><a class="reference internal" href="file-formats.html">Short description and references to the supported file-formats</a></li>
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@@ -181,8 +188,8 @@ or send an e-mail to A. Suter at PSI.</p>
 
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-        &copy; Copyright 2022, Andreas Suter.
+        &copy; Copyright 2023, Andreas Suter.
-      Last updated on Dec 12, 2022.
+      Last updated on Apr 23, 2024.
 
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@@ -204,7 +211,7 @@ or send an e-mail to A. Suter at PSI.</p>
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@@ -90,6 +96,7 @@
 <li class="toctree-l1"><a class="reference internal" href="mupp.html">mupp - μSR Parameter Plotter</a></li>
 <li class="toctree-l1"><a class="reference internal" href="msr2data.html">msr2data - A Program for Automatically Processing Multiple <code class="docutils literal notranslate"><span class="pre">musrfit</span></code> msr Files</a></li>
 <li class="toctree-l1"><a class="reference internal" href="any2many.html">any2many - a Universal μSR-file-format converter</a></li>
+<li class="toctree-l1"><a class="reference internal" href="file-formats.html">Short description and references to the supported file-formats</a></li>
 <li class="toctree-l1"><a class="reference internal" href="musr-root.html">MusrRoot - an Extensible Open File Format for μSR</a></li>
 <li class="toctree-l1"><a class="reference internal" href="acknowledgement.html">Acknowledgements</a></li>
 <li class="toctree-l1"><a class="reference internal" href="bugtracking.html">Bugtracking</a></li>
@@ -195,8 +202,8 @@
 
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-        &copy; Copyright 2022, Andreas Suter.
+        &copy; Copyright 2023, Andreas Suter.
-      Last updated on Dec 12, 2022.
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@@ -218,7 +225,7 @@
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+<li class="toctree-l1"><a class="reference internal" href="musredit.html"><code class="docutils literal notranslate"><span class="pre">musredit</span></code>: the GUI Based Interface to <code class="docutils literal notranslate"><span class="pre">musrfit</span></code></a></li>
+<li class="toctree-l1"><a class="reference internal" href="mupp.html">mupp - μSR Parameter Plotter</a></li>
+<li class="toctree-l1"><a class="reference internal" href="msr2data.html">msr2data - A Program for Automatically Processing Multiple <code class="docutils literal notranslate"><span class="pre">musrfit</span></code> msr Files</a></li>
+<li class="toctree-l1"><a class="reference internal" href="any2many.html">any2many - a Universal μSR-file-format converter</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">Short description and references to the supported file-formats</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#ascii-file-format-for-non-mgrsr">ASCII file format for non-μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#db-file-format-for-non-mgrsr">DB file format for non-μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#dat-csv-like-file-format-for-non-mgrsr">DAT: CSV like file format for non-μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#mdu-file-format-psi-for-mgrsr">MDU file format (psi) for μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#mud-file-format-triumf-for-mgrsr">MUD file format (triumf) for μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#musrroot-file-format-psi-for-mgrsr">MusrRoot file format (PSI) for μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#nexus-file-format-isis-for-mgrsr">NeXus file format (isis) for μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#psi-bin-file-format-psi-for-mgrsr">PSI-BIN file format (psi) for μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#root-file-format-psi-lem-before-2012-for-mgrsr">ROOT file format (psi/lem before 2012) for μSR</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#wkm-file-format-for-mgrsr">WKM file format for μSR</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="musr-root.html">MusrRoot - an Extensible Open File Format for μSR</a></li>
+<li class="toctree-l1"><a class="reference internal" href="acknowledgement.html">Acknowledgements</a></li>
+<li class="toctree-l1"><a class="reference internal" href="bugtracking.html">Bugtracking</a></li>
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+  <div class="section" id="short-description-and-references-to-the-supported-file-formats">
+<span id="file-formats"></span><span id="index-0"></span><h1>Short description and references to the supported file-formats<a class="headerlink" href="#short-description-and-references-to-the-supported-file-formats" title="Permalink to this headline">¶</a></h1>
+<p>Currently the following μSR and non-μSR file formats are supported (in alphabetic order):</p>
+<ul class="simple">
+<li>ascii (non-μSR): <a class="reference internal" href="#ascii-file-format"><span class="std std-ref">ASCII file format for non-uSR</span></a></li>
+<li>db (non-μSR): <a class="reference internal" href="#db-file-format"><span class="std std-ref">DB (triumf)</span></a></li>
+<li>dat (non-μSR): <a class="reference internal" href="#dat-file-format"><span class="std std-ref">DAT: CSV like data file</span></a></li>
+<li>mdu (μSR): <a class="reference internal" href="#mdu-file-format"><span class="std std-ref">MDU file format (PSI)</span></a></li>
+<li>mud (μSR): <a class="reference internal" href="#mud-file-format"><span class="std std-ref">MUon Data access file format (TRIUMF)</span></a></li>
+<li>musr-root (μSR): <a class="reference internal" href="musr-root.html#musrroot"><span class="std std-ref">MusrRoot - an Extensible Open File Format for uSR</span></a></li>
+<li>nexus (μSR): used to read NeXus files from ISIS (HDF4 and HDF5): <a class="reference internal" href="#nexus-file-format"><span class="std std-ref">NeXus</span></a></li>
+<li>psi-bin (μSR): <a class="reference internal" href="#psi-bin-file-format"><span class="std std-ref">PSI-BIN file format (PSI)</span></a></li>
+<li>root (μSR): specific version for LEM before 2012 <a class="reference internal" href="#root-file-format"><span class="std std-ref">LEM ROOT file format</span></a></li>
+<li>wkm (μSR): special ascii file format used in the past by the TU Braunschweig (outdated): <a class="reference internal" href="#wkm-file-format"><span class="std std-ref">WKM</span></a></li>
+</ul>
+<div class="section" id="ascii-file-format-for-non-mgrsr">
+<span id="ascii-file-format"></span><span id="index-1"></span><h2>ASCII file format for non-μSR<a class="headerlink" href="#ascii-file-format-for-non-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>This for instance can be used to fit <span class="math notranslate nohighlight">\(1/\lambda^2 ~ \mathrm{vs} ~ T\)</span> to study gap properties of superconductors.
+Details about the gap-intergrals can be found in the memo <em>GapIntegrals.pdf</em> which can be found in the source code of musrfit
+under &lt;musrfit-home-dir&gt;/src/external/libGapIntegrals.</p>
+<p>This primitive file format has the following structure:</p>
+<p>Comment lines start with a ‘#’ or ‘%’ character.
+The file can start with some header info. The header is optional, as all its tags, but
+if present it has the following format:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">HEADER</span>
+<span class="n">TITLE</span><span class="p">:</span>  <span class="n">title</span>
+<span class="n">X</span><span class="o">-</span><span class="n">AXIS</span><span class="o">-</span><span class="n">TITLE</span><span class="p">:</span> <span class="n">x</span><span class="o">-</span><span class="n">axis</span> <span class="n">title</span>
+<span class="n">Y</span><span class="o">-</span><span class="n">AXIS</span><span class="o">-</span><span class="n">TITLE</span><span class="p">:</span> <span class="n">y</span><span class="o">-</span><span class="n">axis</span> <span class="n">title</span>
+<span class="n">SETUP</span><span class="p">:</span>  <span class="n">setup</span>
+<span class="n">FIELD</span><span class="p">:</span>  <span class="n">field</span>
+<span class="n">TEMP</span><span class="p">:</span>   <span class="n">temperature</span>
+<span class="n">ENERGY</span><span class="p">:</span> <span class="n">energy</span>
+</pre></div>
+</div>
+<p>Field has to be given in (G), temperature in (K) and energy in (keV).</p>
+<p>The data are read column like and start with the data tag DATA, followed by the
+data columns, i.e.:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">DATA</span>
+<span class="n">x</span><span class="p">,</span> <span class="n">y</span> <span class="p">[,</span> <span class="n">error</span> <span class="n">y</span><span class="p">]</span>
+</pre></div>
+</div>
+<p>where spaces, column, are a tab are possible separations.
+If no error in y is present, the weighting in the fit will be equal.</p>
+<p>A full example might look like this:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># libGapIntegrals-test.dat</span>
+<span class="c1"># This is a comment</span>
+<span class="o">%</span> <span class="n">This</span> <span class="k">as</span> <span class="n">well</span>
+<span class="n">HEADER</span>
+<span class="n">TITLE</span><span class="p">:</span> <span class="n">Test</span> <span class="n">superconductor</span> <span class="n">data</span>
+<span class="n">X</span><span class="o">-</span><span class="n">AXIS</span><span class="o">-</span><span class="n">TITLE</span><span class="p">:</span> <span class="n">T</span> <span class="p">(</span><span class="n">K</span><span class="p">)</span>
+<span class="n">Y</span><span class="o">-</span><span class="n">AXIS</span><span class="o">-</span><span class="n">TITLE</span><span class="p">:</span> <span class="c1">#lambda^{-2} (#mum^{-2})</span>
+<span class="n">SETUP</span><span class="p">:</span> <span class="n">H</span> <span class="c1">#parallel c</span>
+<span class="n">FIELD</span><span class="p">:</span> <span class="mi">100</span>
+<span class="n">TEMP</span><span class="p">:</span> <span class="mf">0.0</span>
+<span class="n">ENERGY</span><span class="p">:</span> <span class="mi">4200</span>
+<span class="c1"># here the data will follow</span>
+<span class="n">DATA</span>
+<span class="c1"># x, y, error y</span>
+<span class="mf">0.0318411</span><span class="p">,</span> <span class="mf">7.77455</span><span class="p">,</span> <span class="mf">0.2</span>
+<span class="mf">0.0629929</span><span class="p">,</span> <span class="mf">7.9869</span><span class="p">,</span> <span class="mf">0.15</span>
+<span class="mf">0.113914</span><span class="p">,</span> <span class="mf">7.64209</span><span class="p">,</span> <span class="mf">0.15</span>
+<span class="mf">0.202492</span><span class="p">,</span> <span class="mf">7.37699</span><span class="p">,</span> <span class="mf">0.15</span>
+<span class="mf">0.302725</span><span class="p">,</span> <span class="mf">7.70893</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">0.447456</span><span class="p">,</span> <span class="mf">7.77565</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">0.611685</span><span class="p">,</span> <span class="mf">7.45768</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">0.813613</span><span class="p">,</span> <span class="mf">7.19287</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">1.00822</span><span class="p">,</span> <span class="mf">7.57813</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">1.24793</span><span class="p">,</span> <span class="mf">7.31343</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">1.50635</span><span class="p">,</span> <span class="mf">7.16818</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">1.74591</span><span class="p">,</span> <span class="mf">6.99634</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">1.99795</span><span class="p">,</span> <span class="mf">6.90414</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">2.25061</span><span class="p">,</span> <span class="mf">6.41393</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">2.4958</span><span class="p">,</span> <span class="mf">6.66666</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">2.75514</span><span class="p">,</span> <span class="mf">5.93766</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">3.00753</span><span class="p">,</span> <span class="mf">5.61992</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">3.26056</span><span class="p">,</span> <span class="mf">4.89091</span><span class="p">,</span> <span class="mf">0.12</span>
+<span class="mf">3.49414</span><span class="p">,</span> <span class="mf">4.52005</span><span class="p">,</span> <span class="mf">0.08</span>
+<span class="mf">3.75356</span><span class="p">,</span> <span class="mf">3.73799</span><span class="p">,</span> <span class="mf">0.08</span>
+<span class="mf">3.99425</span><span class="p">,</span> <span class="mf">2.84974</span><span class="p">,</span> <span class="mf">0.08</span>
+<span class="mf">4.30518</span><span class="p">,</span> <span class="mf">1.35139</span><span class="p">,</span> <span class="mf">0.08</span>
+</pre></div>
+</div>
+</div>
+<div class="section" id="db-file-format-for-non-mgrsr">
+<span id="db-file-format"></span><span id="index-2"></span><h2>DB file format for non-μSR<a class="headerlink" href="#db-file-format-for-non-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>The DB file format is an <em>archaic</em> ascii file format from TRIUMF which is intended to be used to collect parameter summaries of various runs, which can be read directly by <a class="reference internal" href="mupp.html#mupp"><span class="std std-ref">mupp</span></a>.</p>
+<p>The DB file is organized in a couple of tags defining various properties, followed by the parameter data with its errors.
+Tags and is content are always separated by an empty line.
+The first tag is the <strong>TITLE</strong>. Followed by the title in the next line</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">TITLE</span>
+<span class="n">This</span> <span class="ow">is</span> <span class="n">the</span> <span class="n">best</span> <span class="n">data</span> <span class="n">ever</span>
+</pre></div>
+</div>
+<p>The next tag is the <strong>ABSTRACT</strong>, followed a potentially multi-line abstract, e.g.</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">ABSTRACT</span>
+<span class="n">Here</span> <span class="n">comes</span> <span class="n">the</span> <span class="n">detailed</span> <span class="n">description</span> <span class="o">...</span>
+</pre></div>
+</div>
+<p>The next tag, <strong>LABELS</strong>, are used to define human readable names for the data parameters to be followed:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">LABELS</span>
+<span class="n">T</span> <span class="p">(</span><span class="n">K</span><span class="p">)</span>
+<span class="n">B</span> <span class="p">(</span><span class="n">G</span><span class="p">)</span>
+<span class="o">...</span>
+</pre></div>
+</div>
+<p>The number of labels have to fit the number of parameters present!</p>
+<p>The next tag is <strong>DATA</strong>, which is a list of the parameter names as found in you msr-file.
+Unlike the other tags, here the list of names follow directly after the <strong>DATA</strong> tag</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">DATA</span> <span class="n">dataT</span> <span class="n">dataB</span> <span class="n">dataE</span> <span class="n">dataTr</span> <span class="o">...</span>
+</pre></div>
+</div>
+<p>Next there will be a line with the tag <strong>\-e</strong>, followed by</p>
+<p>The parameters are afterwards listed as</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">param</span><span class="o">-</span><span class="n">name</span> <span class="o">=</span> <span class="n">val</span><span class="p">,</span> <span class="n">pos</span><span class="o">-</span><span class="n">err</span><span class="p">,</span> <span class="n">neg</span><span class="o">-</span><span class="n">err</span><span class="p">,</span>\
+</pre></div>
+</div>
+<p>After all the parameters listed of a specific run, the <strong>run number</strong> with the run title ends a run data set.
+This might look like this (be aware of the comma!):</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="mi">11231</span><span class="p">,,,</span> <span class="n">AgPlate</span> <span class="mi">250</span><span class="n">nm</span> <span class="p">(</span><span class="n">T5034</span><span class="p">),</span> <span class="n">T</span><span class="o">=</span><span class="mf">200.00</span> <span class="n">K</span><span class="p">,</span> <span class="n">E</span><span class="o">=</span><span class="mf">12.99</span> <span class="n">keV</span><span class="p">,</span> <span class="n">B</span><span class="o">=~</span><span class="mi">50</span><span class="p">(</span><span class="n">G</span><span class="p">)</span><span class="o">/</span><span class="mf">8.65</span><span class="p">(</span><span class="n">A</span><span class="p">),</span> <span class="n">Tr</span><span class="o">/</span><span class="n">Sa</span><span class="o">=</span><span class="mf">12.00</span><span class="o">/-</span><span class="mf">1.80</span> <span class="n">kV</span><span class="p">,</span> <span class="n">SR</span><span class="o">=-</span><span class="mf">10.00</span>
+</pre></div>
+</div>
+<p>A full example might look like this:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">TITLE</span>
+<span class="n">Ag</span> <span class="n">Plate</span> <span class="mi">2023</span> <span class="n">runs</span><span class="p">,</span> <span class="n">Tr12kV</span><span class="p">,</span> <span class="n">E</span><span class="o">=</span><span class="mi">13</span><span class="n">keV</span><span class="p">,</span> <span class="n">TF</span> <span class="n">B</span><span class="o">=</span><span class="mi">50</span><span class="n">G</span>
+
+<span class="n">Abstract</span>
+<span class="n">Summary</span> <span class="n">of</span> <span class="n">the</span>
+
+<span class="n">LABELS</span>
+<span class="n">T</span> <span class="p">(</span><span class="n">K</span><span class="p">)</span>
+<span class="n">B</span> <span class="p">(</span><span class="n">G</span><span class="p">)</span>
+<span class="n">Implantation</span> <span class="n">Energy</span> <span class="p">(</span><span class="n">keV</span><span class="p">)</span>
+<span class="n">Transport</span> <span class="p">(</span><span class="n">kV</span><span class="p">)</span>
+<span class="n">RAL</span><span class="o">-</span><span class="n">RAR</span> <span class="p">(</span><span class="n">kV</span><span class="p">)</span>
+<span class="n">RAT</span><span class="o">-</span><span class="n">RAB</span> <span class="p">(</span><span class="n">kV</span><span class="p">)</span>
+<span class="n">Spin</span> <span class="n">Rotation</span> <span class="n">Angle</span> <span class="p">(</span><span class="n">degree</span><span class="p">)</span>
+<span class="n">Asy</span>
+<span class="n">Lambda</span>
+<span class="n">Ph</span>
+<span class="n">Field</span>
+<span class="n">RelPh_L</span>
+<span class="n">N0_L</span>
+<span class="n">N_bkg_L</span>
+<span class="n">RelPh_T</span>
+<span class="n">N0_T</span>
+<span class="n">N_bkg_T</span>
+<span class="n">RelPh_R</span>
+<span class="n">alpha_LR</span>
+<span class="n">N_bkg_R</span>
+<span class="n">RelPh_B</span>
+<span class="n">alpha_TB</span>
+<span class="n">N_bkg_B</span>
+<span class="n">maxLH</span>
+<span class="n">NDF</span>
+<span class="n">maxLHred</span>
+<span class="n">RUN</span>
+
+<span class="n">Data</span> <span class="n">dataT</span> <span class="n">dataB</span> <span class="n">dataE</span> <span class="n">dataTr</span> <span class="n">dataRALRAR</span> <span class="n">dataRATRAB</span> <span class="n">dataSpinRot</span> <span class="n">Asy</span> <span class="n">Lambda</span> <span class="n">Ph</span> <span class="n">Field</span> <span class="n">RelPh_L</span> <span class="n">N0_L</span> <span class="n">N_bkg_L</span> <span class="n">RelPh_T</span> <span class="n">N0_T</span> <span class="n">N_bkg_T</span> <span class="n">RelPh_R</span> <span class="n">alpha_LR</span> <span class="n">N_bkg_R</span> <span class="n">RelPh_B</span> <span class="n">alpha_TB</span> <span class="n">N_bkg_B</span> <span class="n">maxLH</span> <span class="n">NDF</span> <span class="n">maxLHred</span> <span class="n">RUN</span>
+\<span class="o">-</span><span class="n">e</span>
+<span class="n">dataT</span> <span class="o">=</span> <span class="mf">200.001</span><span class="p">,</span> <span class="mf">0.0009</span><span class="p">,</span> <span class="mf">0.0009</span><span class="p">,</span>\
+<span class="n">dataB</span> <span class="o">=</span> <span class="mf">49.49</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataE</span> <span class="o">=</span> <span class="mf">12.9952</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataTr</span> <span class="o">=</span> <span class="mf">11.9993</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataRALRAR</span> <span class="o">=</span> <span class="o">-</span><span class="mf">0.008</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataRATRAB</span> <span class="o">=</span> <span class="o">-</span><span class="mf">0.009</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataSpinRot</span> <span class="o">=</span> <span class="o">-</span><span class="mi">10</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">Asy</span> <span class="o">=</span> <span class="mf">0.22466</span><span class="p">,</span> <span class="mf">0.00084</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.00084</span><span class="p">,</span>\
+<span class="n">Lambda</span> <span class="o">=</span> <span class="mf">0.0081</span><span class="p">,</span> <span class="mf">0.0014</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.0014</span><span class="p">,</span>\
+<span class="n">Ph</span> <span class="o">=</span> <span class="mf">12.14</span><span class="p">,</span> <span class="mf">0.32</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.32</span><span class="p">,</span>\
+<span class="n">Field</span> <span class="o">=</span> <span class="mf">50.837</span><span class="p">,</span> <span class="mf">0.017</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.017</span><span class="p">,</span>\
+<span class="n">RelPh_L</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">N0_L</span> <span class="o">=</span> <span class="mf">430.67</span><span class="p">,</span> <span class="mf">0.39</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.39</span><span class="p">,</span>\
+<span class="n">N_bkg_L</span> <span class="o">=</span> <span class="mf">6.81</span><span class="p">,</span> <span class="mf">0.048</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.048</span><span class="p">,</span>\
+<span class="n">RelPh_T</span> <span class="o">=</span> <span class="o">-</span><span class="mf">89.95</span><span class="p">,</span> <span class="mf">0.4</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.4</span><span class="p">,</span>\
+<span class="n">N0_T</span> <span class="o">=</span> <span class="mf">422.6</span><span class="p">,</span> <span class="mf">0.37</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.37</span><span class="p">,</span>\
+<span class="n">N_bkg_T</span> <span class="o">=</span> <span class="mf">7.125</span><span class="p">,</span> <span class="mf">0.047</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.048</span><span class="p">,</span>\
+<span class="n">RelPh_R</span> <span class="o">=</span> <span class="o">-</span><span class="mf">178.55</span><span class="p">,</span> <span class="mf">0.39</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.39</span><span class="p">,</span>\
+<span class="n">alpha_LR</span> <span class="o">=</span> <span class="mf">0.9729</span><span class="p">,</span> <span class="mf">0.0012</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.0012</span><span class="p">,</span>\
+<span class="n">N_bkg_R</span> <span class="o">=</span> <span class="mf">7.375</span><span class="p">,</span> <span class="mf">0.048</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.048</span><span class="p">,</span>\
+<span class="n">RelPh_B</span> <span class="o">=</span> <span class="mf">90.38</span><span class="p">,</span> <span class="mf">0.4</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.4</span><span class="p">,</span>\
+<span class="n">alpha_TB</span> <span class="o">=</span> <span class="mf">0.9522</span><span class="p">,</span> <span class="mf">0.0012</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.0012</span><span class="p">,</span>\
+<span class="n">N_bkg_B</span> <span class="o">=</span> <span class="mf">6.546</span><span class="p">,</span> <span class="mf">0.047</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.047</span><span class="p">,</span>\
+<span class="n">maxLH</span> <span class="o">=</span> <span class="mf">20303.3</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">NDF</span> <span class="o">=</span> <span class="mi">20361</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">maxLHred</span> <span class="o">=</span> <span class="mf">0.997166</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="mi">11231</span><span class="p">,,,</span> <span class="n">AgPlate</span> <span class="mi">250</span><span class="n">nm</span> <span class="p">(</span><span class="n">T5034</span><span class="p">),</span> <span class="n">T</span><span class="o">=</span><span class="mf">200.00</span> <span class="n">K</span><span class="p">,</span> <span class="n">E</span><span class="o">=</span><span class="mf">12.99</span> <span class="n">keV</span><span class="p">,</span> <span class="n">B</span><span class="o">=~</span><span class="mi">50</span><span class="p">(</span><span class="n">G</span><span class="p">)</span><span class="o">/</span><span class="mf">8.65</span><span class="p">(</span><span class="n">A</span><span class="p">),</span> <span class="n">Tr</span><span class="o">/</span><span class="n">Sa</span><span class="o">=</span><span class="mf">12.00</span><span class="o">/-</span><span class="mf">1.80</span> <span class="n">kV</span><span class="p">,</span> <span class="n">SR</span><span class="o">=-</span><span class="mf">10.00</span>
+<span class="n">dataT</span> <span class="o">=</span> <span class="mi">153</span><span class="p">,</span> <span class="mf">0.7</span><span class="p">,</span> <span class="mf">0.7</span><span class="p">,</span>\
+<span class="n">dataB</span> <span class="o">=</span> <span class="mf">49.49</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataE</span> <span class="o">=</span> <span class="mf">12.9952</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataTr</span> <span class="o">=</span> <span class="mf">11.9993</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataRALRAR</span> <span class="o">=</span> <span class="o">-</span><span class="mf">0.008</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataRATRAB</span> <span class="o">=</span> <span class="o">-</span><span class="mf">0.009</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">dataSpinRot</span> <span class="o">=</span> <span class="o">-</span><span class="mi">10</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">Asy</span> <span class="o">=</span> <span class="mf">0.22253</span><span class="p">,</span> <span class="mf">0.00084</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.00083</span><span class="p">,</span>\
+<span class="n">Lambda</span> <span class="o">=</span> <span class="mf">0.0055</span><span class="p">,</span> <span class="mf">0.0014</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.0014</span><span class="p">,</span>\
+<span class="n">Ph</span> <span class="o">=</span> <span class="mf">11.53</span><span class="p">,</span> <span class="mf">0.32</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.32</span><span class="p">,</span>\
+<span class="n">Field</span> <span class="o">=</span> <span class="mf">51.026</span><span class="p">,</span> <span class="mf">0.017</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.017</span><span class="p">,</span>\
+<span class="n">RelPh_L</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">N0_L</span> <span class="o">=</span> <span class="mf">430.31</span><span class="p">,</span> <span class="mf">0.39</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.39</span><span class="p">,</span>\
+<span class="n">N_bkg_L</span> <span class="o">=</span> <span class="mf">6.762</span><span class="p">,</span> <span class="mf">0.048</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.048</span><span class="p">,</span>\
+<span class="n">RelPh_T</span> <span class="o">=</span> <span class="o">-</span><span class="mf">89.3</span><span class="p">,</span> <span class="mf">0.4</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.4</span><span class="p">,</span>\
+<span class="n">N0_T</span> <span class="o">=</span> <span class="mf">422.31</span><span class="p">,</span> <span class="mf">0.37</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.37</span><span class="p">,</span>\
+<span class="n">N_bkg_T</span> <span class="o">=</span> <span class="mf">6.96</span><span class="p">,</span> <span class="mf">0.047</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.047</span><span class="p">,</span>\
+<span class="n">RelPh_R</span> <span class="o">=</span> <span class="o">-</span><span class="mf">178.61</span><span class="p">,</span> <span class="mf">0.4</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.4</span><span class="p">,</span>\
+<span class="n">alpha_LR</span> <span class="o">=</span> <span class="mf">0.975</span><span class="p">,</span> <span class="mf">0.0013</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.0012</span><span class="p">,</span>\
+<span class="n">N_bkg_R</span> <span class="o">=</span> <span class="mf">7.361</span><span class="p">,</span> <span class="mf">0.048</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.048</span><span class="p">,</span>\
+<span class="n">RelPh_B</span> <span class="o">=</span> <span class="mf">90.24</span><span class="p">,</span> <span class="mf">0.4</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.4</span><span class="p">,</span>\
+<span class="n">alpha_TB</span> <span class="o">=</span> <span class="mf">0.9605</span><span class="p">,</span> <span class="mf">0.0012</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.0012</span><span class="p">,</span>\
+<span class="n">N_bkg_B</span> <span class="o">=</span> <span class="mf">6.623</span><span class="p">,</span> <span class="mf">0.047</span><span class="p">,</span> <span class="o">-</span><span class="mf">0.047</span><span class="p">,</span>\
+<span class="n">maxLH</span> <span class="o">=</span> <span class="mf">20435.6</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">NDF</span> <span class="o">=</span> <span class="mi">20361</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="n">maxLHred</span> <span class="o">=</span> <span class="mf">1.00366</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span>\
+<span class="mi">11235</span><span class="p">,,,</span> <span class="n">AgPlate</span> <span class="mi">250</span><span class="n">nm</span> <span class="p">(</span><span class="n">T5034</span><span class="p">),</span> <span class="n">T</span><span class="o">=</span><span class="mf">151.72</span> <span class="n">K</span><span class="p">,</span> <span class="n">E</span><span class="o">=</span><span class="mf">13.00</span> <span class="n">keV</span><span class="p">,</span> <span class="n">B</span><span class="o">=~</span><span class="mi">50</span><span class="p">(</span><span class="n">G</span><span class="p">)</span><span class="o">/</span><span class="mf">8.65</span><span class="p">(</span><span class="n">A</span><span class="p">),</span> <span class="n">Tr</span><span class="o">/</span><span class="n">Sa</span><span class="o">=</span><span class="mf">12.00</span><span class="o">/-</span><span class="mf">1.80</span> <span class="n">kV</span><span class="p">,</span> <span class="n">SR</span><span class="o">=-</span><span class="mf">10.00</span>
+<span class="o">&gt;&gt;</span> <span class="n">here</span> <span class="n">many</span> <span class="n">more</span> <span class="n">run</span> <span class="n">data</span> <span class="n">would</span> <span class="n">follow</span> <span class="o">...</span>
+</pre></div>
+</div>
+</div>
+<div class="section" id="dat-csv-like-file-format-for-non-mgrsr">
+<span id="dat-file-format"></span><span id="index-3"></span><h2>DAT: CSV like file format for non-μSR<a class="headerlink" href="#dat-csv-like-file-format-for-non-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>This is typically used when exporting the parameter data from <strong>msr2data</strong> to be used in <strong>mupp</strong>, gnuplot, origin, or whatever parameter plotter you might use.
+The first line defines the parameter tags separated by spaces or tabs. If errors are available there are labeled be the ending <em>Err</em>.
+This is followed by the parameter values and its errors if present. A fill example looks like this:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">dataT</span>        <span class="n">dataTErr</span>        <span class="n">dataB</span>        <span class="n">dataE</span>        <span class="n">dataTr</span>       <span class="n">dataRALRAR</span>   <span class="n">dataRATRAB</span>   <span class="n">dataSpinRot</span>  <span class="n">Asy</span>          <span class="n">AsyPosErr</span>          <span class="n">AsyNegErr</span>          <span class="n">Lambda</span>       <span class="n">LambdaPosErr</span>       <span class="n">LambdaNegErr</span>       <span class="n">Ph</span>           <span class="n">PhPosErr</span>           <span class="n">PhNegErr</span>           <span class="n">Field</span>        <span class="n">FieldPosErr</span>        <span class="n">FieldNegErr</span>        <span class="n">RelPh_L</span>      <span class="n">RelPh_LPosErr</span>      <span class="n">RelPh_LNegErr</span>      <span class="n">N0_L</span>         <span class="n">N0_LPosErr</span>         <span class="n">N0_LNegErr</span>         <span class="n">N_bkg_L</span>      <span class="n">N_bkg_LPosErr</span>      <span class="n">N_bkg_LNegErr</span>      <span class="n">RelPh_T</span>      <span class="n">RelPh_TPosErr</span>      <span class="n">RelPh_TNegErr</span>      <span class="n">N0_T</span>         <span class="n">N0_TPosErr</span>         <span class="n">N0_TNegErr</span>         <span class="n">N_bkg_T</span>      <span class="n">N_bkg_TPosErr</span>      <span class="n">N_bkg_TNegErr</span>      <span class="n">RelPh_R</span>      <span class="n">RelPh_RPosErr</span>      <span class="n">RelPh_RNegErr</span>      <span class="n">alpha_LR</span>     <span class="n">alpha_LRPosErr</span>     <span class="n">alpha_LRNegErr</span>     <span class="n">N_bkg_R</span>      <span class="n">N_bkg_RPosErr</span>      <span class="n">N_bkg_RNegErr</span>      <span class="n">RelPh_B</span>      <span class="n">RelPh_BPosErr</span>      <span class="n">RelPh_BNegErr</span>      <span class="n">alpha_TB</span>     <span class="n">alpha_TBPosErr</span>     <span class="n">alpha_TBNegErr</span>     <span class="n">N_bkg_B</span>      <span class="n">N_bkg_BPosErr</span>      <span class="n">N_bkg_BNegErr</span>      <span class="n">maxLH</span>        <span class="n">NDF</span>          <span class="n">maxLHred</span>     <span class="n">RUN</span>
+<span class="mi">200</span>          <span class="mf">0.007</span>           <span class="mf">99.48</span>        <span class="mf">1.11754</span>      <span class="mf">10.001</span>       <span class="o">-</span><span class="mf">0.008</span>       <span class="o">-</span><span class="mf">0.008</span>       <span class="o">-</span><span class="mi">10</span>          <span class="mf">0.1587</span>        <span class="mf">0.0012</span>        <span class="mf">0.0012</span>        <span class="mf">0.0263</span>        <span class="mf">0.003</span>         <span class="mf">0.003</span>         <span class="mf">29.85</span>         <span class="mf">0.64</span>          <span class="mf">0.64</span>          <span class="mf">101.179</span>       <span class="mf">0.035</span>         <span class="mf">0.035</span>         <span class="mi">0</span>             <span class="mi">0</span>             <span class="mi">0</span>             <span class="mf">219.27</span>        <span class="mf">0.27</span>          <span class="mf">0.27</span>          <span class="mf">2.676</span>         <span class="mf">0.033</span>         <span class="mf">0.033</span>         <span class="o">-</span><span class="mf">89.79</span>        <span class="mf">0.81</span>          <span class="mf">0.81</span>          <span class="mf">210.42</span>        <span class="mf">0.26</span>          <span class="mf">0.26</span>          <span class="mf">2.723</span>         <span class="mf">0.032</span>         <span class="mf">0.032</span>         <span class="o">-</span><span class="mf">179.73</span>       <span class="mf">0.81</span>          <span class="mf">0.81</span>          <span class="mf">0.9808</span>        <span class="mf">0.0017</span>        <span class="mf">0.0017</span>        <span class="mf">2.993</span>         <span class="mf">0.033</span>         <span class="mf">0.033</span>         <span class="mf">90.05</span>         <span class="mf">0.82</span>          <span class="mf">0.82</span>          <span class="mf">0.9755</span>        <span class="mf">0.0017</span>        <span class="mf">0.0017</span>        <span class="mf">2.501</span>         <span class="mf">0.032</span>         <span class="mf">0.032</span>         <span class="mf">20444.8</span>      <span class="mi">20361</span>        <span class="mf">1.00412</span>      <span class="mi">11400</span>
+<span class="mi">200</span>          <span class="mf">0.009</span>           <span class="mf">99.49</span>        <span class="mf">2.11668</span>      <span class="mf">10.001</span>       <span class="o">-</span><span class="mf">0.008</span>       <span class="o">-</span><span class="mf">0.008</span>       <span class="o">-</span><span class="mi">10</span>          <span class="mf">0.1732</span>        <span class="mf">0.0012</span>        <span class="mf">0.0012</span>        <span class="mf">0.0096</span>        <span class="mf">0.0025</span>        <span class="mf">0.0026</span>        <span class="mf">28.88</span>         <span class="mf">0.57</span>          <span class="mf">0.57</span>          <span class="mf">101.231</span>       <span class="mf">0.03</span>          <span class="mf">0.03</span>          <span class="mi">0</span>             <span class="mi">0</span>             <span class="mi">0</span>             <span class="mf">219.86</span>        <span class="mf">0.27</span>          <span class="mf">0.27</span>          <span class="mf">2.749</span>         <span class="mf">0.033</span>         <span class="mf">0.033</span>         <span class="o">-</span><span class="mf">88.87</span>        <span class="mf">0.71</span>          <span class="mf">0.71</span>          <span class="mf">211.47</span>        <span class="mf">0.26</span>          <span class="mf">0.26</span>          <span class="mf">2.791</span>         <span class="mf">0.032</span>         <span class="mf">0.032</span>         <span class="o">-</span><span class="mf">178.48</span>       <span class="mf">0.72</span>          <span class="mf">0.71</span>          <span class="mf">0.9678</span>        <span class="mf">0.0017</span>        <span class="mf">0.0017</span>        <span class="mf">2.969</span>         <span class="mf">0.033</span>         <span class="mf">0.033</span>         <span class="mf">90.94</span>         <span class="mf">0.73</span>          <span class="mf">0.73</span>          <span class="mf">0.9608</span>        <span class="mf">0.0017</span>        <span class="mf">0.0017</span>        <span class="mf">2.653</span>         <span class="mf">0.032</span>         <span class="mf">0.032</span>         <span class="mf">20182.5</span>      <span class="mi">20361</span>        <span class="mf">0.991233</span>     <span class="mi">11401</span>
+</pre></div>
+</div>
+</div>
+<div class="section" id="mdu-file-format-psi-for-mgrsr">
+<span id="mdu-file-format"></span><span id="index-4"></span><h2>MDU file format (psi) for μSR<a class="headerlink" href="#mdu-file-format-psi-for-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>For details about the PSI-BIN/MDU file format from PSI see <a class="reference external" href="http://lmu.web.psi.ch/docu/manuals/bulk_manuals/software/Class_MuSR_PSI/index.html">Class_MuSR_PSI</a></p>
+</div>
+<div class="section" id="mud-file-format-triumf-for-mgrsr">
+<span id="mud-file-format"></span><span id="index-5"></span><h2>MUD file format (triumf) for μSR<a class="headerlink" href="#mud-file-format-triumf-for-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>For details about the MUD file format from triumf see <a class="reference external" href="https://cmms.triumf.ca/mud/">MUon Data access</a> .</p>
+</div>
+<div class="section" id="musrroot-file-format-psi-for-mgrsr">
+<span id="musr-root-file-format"></span><h2>MusrRoot file format (PSI) for μSR<a class="headerlink" href="#musrroot-file-format-psi-for-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>For details see <a class="reference internal" href="musr-root.html#musrroot"><span class="std std-ref">MusrRoot - an Extensible Open File Format for uSR</span></a>.</p>
+</div>
+<div class="section" id="nexus-file-format-isis-for-mgrsr">
+<span id="nexus-file-format"></span><span id="index-6"></span><h2>NeXus file format (isis) for μSR<a class="headerlink" href="#nexus-file-format-isis-for-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>For details about the NeXus file format from ISIS (UK) see <a class="reference external" href="https://doi.org/10.1016/S0921-4526(02)01613-7">The application of the NeXus data format to ISIS muon data</a> . For a detailed list of available meta information and data see <a class="reference external" href="https://www.isis.stfc.ac.uk/Pages/nexus-definition-v27924.pdf">NeXus Instrument Definitions for ISIS muon Data</a> .</p>
+</div>
+<div class="section" id="psi-bin-file-format-psi-for-mgrsr">
+<span id="psi-bin-file-format"></span><span id="index-7"></span><h2>PSI-BIN file format (psi) for μSR<a class="headerlink" href="#psi-bin-file-format-psi-for-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>For details about the PSI-BIN/MDU file format from PSI see <a class="reference external" href="http://lmu.web.psi.ch/docu/manuals/bulk_manuals/software/Class_MuSR_PSI/index.html">Class_MuSR_PSI</a>.</p>
+</div>
+<div class="section" id="root-file-format-psi-lem-before-2012-for-mgrsr">
+<span id="root-file-format"></span><span id="index-8"></span><h2>ROOT file format (psi/lem before 2012) for μSR<a class="headerlink" href="#root-file-format-psi-lem-before-2012-for-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>For details about the API of ROOT files can be here: <a class="reference external" href="https://root.cern/manual/root_files/">ROOT files</a>.
+The structure of the ROOT files (LEM, before 2012) looks like this:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">ROOT</span><span class="o">-</span><span class="n">file</span> <span class="o">--|</span>
+            <span class="o">|--</span> <span class="n">histos</span> <span class="o">---|</span>
+            <span class="o">|</span>             <span class="o">|--</span> <span class="n">DecayAnaModule</span>
+            <span class="o">|</span>             <span class="o">|--</span> <span class="n">PileUpAnaModule</span>
+            <span class="o">|</span>             <span class="o">|--</span> <span class="n">ScalerSumRate</span>
+            <span class="o">|</span>             <span class="o">|--</span> <span class="n">SCAnaModule</span>
+            <span class="o">|</span>
+            <span class="o">|--</span> <span class="n">RunInfo</span> <span class="o">--|</span>
+                          <span class="o">|--</span> <span class="n">RunSummary</span>
+</pre></div>
+</div>
+<p><code class="docutils literal notranslate"><span class="pre">histos</span></code>, <code class="docutils literal notranslate"><span class="pre">RunInfo</span></code>, <code class="docutils literal notranslate"><span class="pre">DecayAnaModule</span></code>, <code class="docutils literal notranslate"><span class="pre">PileUpAnaModule</span></code>, <code class="docutils literal notranslate"><span class="pre">ScalerSumRate</span></code>, <code class="docutils literal notranslate"><span class="pre">SCAnaModule</span></code> are <strong>TFolder</strong> objects.</p>
+<p>The <code class="docutils literal notranslate"><span class="pre">DecayAnaModule</span></code> object holds the positron spectra</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">DecayAnaModule</span> <span class="o">--|</span>
+                 <span class="o">|--</span> <span class="n">hDecay00</span>
+                 <span class="o">|--</span> <span class="n">hDecay01</span>
+                 <span class="o">|--</span> <span class="n">hDecay02</span>
+                 <span class="o">|--</span> <span class="n">hDecay03</span>
+                 <span class="o">|--</span> <span class="n">hDecay20</span>
+                 <span class="o">|--</span> <span class="n">hDecay21</span>
+                 <span class="o">|--</span> <span class="n">hDecay22</span>
+                 <span class="o">|--</span> <span class="n">hDecay23</span>
+</pre></div>
+</div>
+<p>The <code class="docutils literal notranslate"><span class="pre">hDecayXX</span></code> files or <strong>TH1F</strong> objects containing the positron spectra of the LEM detectors.</p>
+<p>The detectors (00, 01, 02, and 03) are the detectors (Left, Top, Right, Bottom). These are non-post-pileup (NPP) histograms.</p>
+<p>The detectors (20, 21, 22, and 23) are the detectors (Left, Top, Right, Bottom). These are post-pileup-corrected (PPC) histograms.</p>
+<p>The <code class="docutils literal notranslate"><span class="pre">SCAnaModule</span></code> contains various <strong>TF1H</strong> objects of slow control data of the run.</p>
+<p>The <code class="docutils literal notranslate"><span class="pre">RunSummary</span></code> is essentially an ascii dump, with summary information of the run.</p>
+</div>
+<div class="section" id="wkm-file-format-for-mgrsr">
+<span id="wkm-file-format"></span><span id="index-9"></span><h2>WKM file format for μSR<a class="headerlink" href="#wkm-file-format-for-mgrsr" title="Permalink to this headline">¶</a></h2>
+<p>WKM is an obsolete ascii file format, originally introduced by people from the TU Braunschweig.
+It starts with a header which shows like this:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="o">-</span> <span class="n">WKM</span> <span class="n">data</span> <span class="n">file</span> <span class="n">converted</span> <span class="k">with</span> <span class="n">any2many</span>
+<span class="n">NEMU_Run</span><span class="p">:</span>            <span class="mi">2466</span>
+<span class="n">nemu_Run</span><span class="p">:</span>            <span class="o">./</span><span class="mf">2466.</span><span class="n">wkm</span>
+<span class="n">Date</span><span class="p">:</span>                <span class="mi">13</span><span class="p">:</span><span class="mi">22</span><span class="p">:</span><span class="mi">00</span> <span class="mi">2012</span><span class="o">-</span><span class="mi">06</span><span class="o">-</span><span class="mi">03</span> <span class="o">/</span> <span class="mi">14</span><span class="p">:</span><span class="mi">04</span><span class="p">:</span><span class="mi">38</span> <span class="mi">2012</span><span class="o">-</span><span class="mi">06</span><span class="o">-</span><span class="mi">03</span>
+<span class="n">Title</span><span class="p">:</span>               <span class="n">LSCO</span> <span class="n">x</span><span class="o">=</span><span class="mf">0.02</span> <span class="p">(</span><span class="mi">224</span><span class="o">-</span><span class="mi">227</span><span class="p">),</span> <span class="n">T</span><span class="o">=</span><span class="mf">12.00</span> <span class="p">(</span><span class="n">K</span><span class="p">),</span> <span class="n">E</span><span class="o">=</span><span class="mf">5.57</span> <span class="n">keV</span><span class="p">,</span> <span class="n">WEW</span> <span class="n">B</span><span class="o">=~</span><span class="mi">49</span><span class="p">(</span><span class="n">G</span><span class="p">)</span><span class="o">/</span><span class="mf">8.62</span><span class="p">(</span><span class="n">A</span><span class="p">),</span> <span class="n">Tr</span><span class="o">=</span><span class="mf">15.02</span> <span class="p">(</span><span class="n">kV</span><span class="p">),</span> <span class="n">Sample</span><span class="o">=</span><span class="mf">8.70</span> <span class="p">(</span><span class="n">kV</span><span class="p">),</span> <span class="n">SpinRot</span> <span class="o">-</span><span class="mi">10</span>
+<span class="n">Field</span><span class="p">:</span>               <span class="mf">49.11</span>
+<span class="n">Setup</span><span class="p">:</span>               <span class="n">Sample</span><span class="p">,</span> <span class="n">WEW</span><span class="p">,</span> <span class="n">LowTemp</span><span class="o">-</span><span class="mi">2</span>
+<span class="n">Temp</span><span class="p">:</span>                <span class="mf">11.999</span>
+<span class="n">TOF</span><span class="p">(</span><span class="n">M3S1</span><span class="p">):</span>           <span class="n">nocut</span>
+<span class="n">Groups</span><span class="p">:</span>              <span class="mi">8</span>
+<span class="n">Channels</span><span class="p">:</span>            <span class="mi">66601</span>
+<span class="n">Resolution</span><span class="p">:</span>          <span class="mf">0.0001953125</span>
+</pre></div>
+</div>
+<p>The header ends with an empty line.</p>
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