LMU/musrfit
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eb98c9727cd5d16b619d5581e72eb048fba447c3
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868 Commits

Author SHA1 Message Date
suter_a eb98c9727c add simple F-mu-F to the standard theory functions. 2025-06-05 10:41:12 +02:00
suter_a 079baa3edf start adding more standard theory functions. Not all ready yet. 2025-06-04 17:39:02 +02:00
suter_a 9fa90c24fb start populating nfs4 path rather than afs in the musrfit_startup.xml. 2025-05-06 15:33:13 +02:00
suter_a 0f95551200 add necessary increment for unique cropped name for PSI-BIN. 2025-03-19 16:24:56 +01:00
suter_a b8ce741534 make sure that for PSI-BIN export the 4 char detector names are unique. 2025-03-19 09:45:16 +01:00
suter_a 4b6654ca2a add title to PRawRunDataSet. 2025-03-19 09:44:13 +01:00
suter_a 38d4ec1806 read 'Sample Orientation' from ROOT file, since it might be needed by any2many. 2025-03-18 12:51:40 +01:00
suter_a 4231d26604 make sure that the 'selected' object is present. 2025-02-24 20:22:20 +01:00
suter_a a28650f017 this is a workaround which should prevent that the key event is executed if a text/latex is written into the canvas. 2025-02-17 17:53:39 +01:00
suter_a 5f7f79e46d header of exported data adopted for easier read in with pandas. 2025-02-14 09:06:55 +01:00
suter_a 4a20d805dd updated the copyright info. 2025-01-30 11:15:42 +01:00
suter_a 0828d1b8d4 proper handling of comments and descriptions in the RUN block. 2025-01-29 08:04:48 +01:00
suter_a ebdb0feb7f path-run-name in RUN block of the msr-file can now handle spaces. 2025-01-18 13:35:08 +01:00
ext-mcfadd_r ead1674b13 Explicit passing of MnStrategy during minimizer initialization 
This patch fixes compilation errors that arise with recent ROOT versions (e.g., 6.34.02),
which require a ROOT::Minuit2::MnStrategy object to be passed when initializing the
ROOT::Minuit2::MnX (X = Migrad, Simplex, Minimize) minimizers (i.e., instead of the integer
representing the "strategy").
 2025-01-09 11:38:33 -08:00
suter_a 20dd08fbef changed default ROOT color kGreen to kGreen+2. 2024-12-14 14:54:17 +01:00
suter_a 4febdb42b4 make sure that for non-muSR data errors are not = 0. Will set it to 1, and issue a warning. This prevents chisq to crash. 2024-10-14 12:22:25 +02:00
suter_a ae95a5dc1c implemented unary operator for metaData in functions. 2024-10-11 16:34:49 +02:00
suter_a 7838901fbe make sure that the run template number has at least 4 digits before proceeding. 2024-09-17 16:27:04 +02:00
ext-mcfadd_r 58889614e5 fix batch mode averaged output 
closes issue #63
 2024-09-10 13:52:30 -07:00
suter_a 64d3b6192b added the option to write the content of the MINUIT2.OUTPUT ascii file as yaml. This extends the previous commit from Ryan M.L. McFadden. 2024-06-18 11:16:15 +02:00
ext-mcfadd_r 833171c712 write the fit results to an easy-to-read/parse yaml file 
This patch adds routines for writing a comprehensive set of fit results (i.e., parameter values, parabolic errors, asymmetric errors, covariances, correlation coefficients, etc.) for an individual `.msr` file to an easy-to-read/parse `.yaml` file.

The main motivation for the code addition is to provide users with easy access to the fit's covariance matrix without the need for "extra" manual effort (e.g., parsing the contents of `MINUIT2.OUTPUT` or `MINUIT2.root`). The other fit quantities are also included for completeness.

Reading/accessing the output is trivial using, for example, the PyYAML Python library (https://github.com/yaml/pyyaml):

```python
import yaml

with open("2125_tf_histo.yaml", "r") as fh:
	results = yaml.load(fh, Loader=yaml.SafeLoader)

cov = results["covariance"]["Field_1"]["Sigma_1"]
```

Note: the naming conventions chosen for the blocks in the `.yaml` output closely follow those used by the iminuit Python library (https://github.com/scikit-hep/iminuit).
 2024-06-17 12:51:04 -03:00
suter_a ccaba41868 modernize the way how to check/deal with OpenMP. This helps also on the macOS side. 2024-06-07 12:44:59 +02:00
suter_a 92b1aac7a6 got rid off some double brackets. 2024-04-20 18:13:09 +02:00
suter_a 26e25ce10b fixed a fruther bracket bug. 2024-04-20 17:39:18 +02:00
suter_a cedaabeb98 improved bracket handling in function string generation. 2024-04-20 09:40:04 +02:00
suter_a 7198521f60 make sure that brackets are not lost in the function reconstruct, e.g. 1/(2*parX) is not going over into 1/2*parX. 2024-04-19 12:39:01 +02:00
suter_a cadd28b9fe Merge branch 'root6' of https://git.psi.ch/nemu/musrfit into root6 2024-02-03 20:01:01 +01:00
suter_a 79c8be54bf update of the copyright info. 2024-02-03 19:58:11 +01:00
suter_a 3cf89c6571 added some missing qutation marks musrfit_startup.xml. 2023-11-29 12:47:24 +01:00
suter_a 673a742631 added some more default search path to default musrfit_startup.xml. 2023-11-29 12:44:58 +01:00
suter_a 23ac67a443 add an option to musrfit which allows to replace to musrfit_startup.xml by the default one. 2023-11-11 18:26:25 +01:00
suter_a d6a3767040 adopted default path/file-name scheme to the current state. 2023-11-10 15:05:38 +01:00
suter_a 4747fbc77d make sure that singleRunMsrFile is a legal pointer before proceeding. 2023-11-01 14:38:21 +01:00
suter_a 6f521668c0 increased main version to 1.9.2, libPMusr to 1.4.0, and mupp to 1.1.0. 2023-10-25 08:46:02 +02:00
suter_a be29e55834 switched PRunSingleHistoRRF where possible to smart pointers. 2023-10-21 19:19:04 +02:00
suter_a 8e7fda92e1 switched PRunDataHandler where possible to smart pointers. 2023-10-21 19:11:01 +02:00
suter_a 890d48a95c switched PRunBase where possible to smart pointers. 2023-10-21 18:46:24 +02:00
suter_a 823ef087c9 switched PRgeHandler where possible to smart pointers. 2023-10-21 18:40:35 +02:00
suter_a 05c06a071e switched PMusrT0 where possible to smart pointers. 2023-10-21 18:34:55 +02:00
suter_a dbfadc4e42 switched PMusrCanvas where possible to smart pointers. 2023-10-21 17:47:32 +02:00
suter_a 93754a9fc2 replaced some raw pointer by smart pointer in PFitter. 2023-10-21 17:45:49 +02:00
suter_a 0bff931af9 switch to smart pointers in PMsr2Data where possible. 2023-10-21 13:32:44 +02:00
suter_a 1a72d67be9 switched PFitter to smart pointers. 2023-10-21 11:39:16 +02:00
suter_a 7e17af0256 switched PMsrHandler where possible to smart pointers. 2023-10-21 11:21:27 +02:00
suter_a 5d731611cf remove one check for Fourier only. 2023-10-18 14:22:06 +02:00
suter_a 4b561b1f15 get rid of raw pointers for PFourierCanvas where it makes sense. 2023-10-18 14:21:15 +02:00
suter_a c6ebaf3675 more potential musr-data-file paths added. 2023-08-31 10:30:04 +02:00
suter_a 4d1c7c10c8 make sure that exported MusrRoot files have proper stats in the histo objects. 2023-08-31 08:22:37 +02:00
suter_a 22178f7869 improved search run, allowing to look for a specific file format in case the run is saved in multiple different file formats. 2023-08-30 15:05:56 +02:00
suter_a 5d9eb0dcec allow more flexible dealing with LEM run numbers > 9999. 2023-05-16 08:27:52 +02:00