LMU/musrfit
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aa2f2756a46850b67786cecfd6dd2b2b7f76ca48
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951 Commits

Author SHA1 Message Date
suter_a aa2f2756a4 add necessary increment for unique cropped name for PSI-BIN. 2025-03-19 16:46:44 +01:00
suter_a 129e4c10dd make sure that for PSI-BIN export the 4 char detector names are unique. 2025-03-19 12:21:36 +01:00
suter_a bf75b5ef14 add title to PRawRunDataSet. 2025-03-19 12:21:24 +01:00
suter_a c0b1071a27 read 'Sample Orientation' from ROOT file, since it might be needed by any2many. 2025-03-19 12:21:12 +01:00
suter_a 5b9a66758b make sure that the 'selected' object is present. 2025-02-25 16:15:53 +01:00
suter_a d65b04e855 this is a workaround which should prevent that the key event is executed if a text/latex is written into the canvas. 2025-02-25 16:15:40 +01:00
suter_a f3d7b9c7ff header of exported data adopted for easier read in with pandas. 2025-02-17 08:17:58 +01:00
suter_a 44821cb8cd updated the copyright info. 2025-01-30 12:00:49 +01:00
suter_a 86b5080dee proper handling of comments and descriptions in the RUN block. 2025-01-29 08:17:51 +01:00
suter_a 8dc871e082 path-run-name in RUN block of the msr-file can now handle spaces. 2025-01-20 16:10:25 +01:00
ext-mcfadd_r bfade6f4b8 Explicit passing of MnStrategy during minimizer initialization 
This patch fixes compilation errors that arise with recent ROOT versions (e.g., 6.34.02),
which require a ROOT::Minuit2::MnStrategy object to be passed when initializing the
ROOT::Minuit2::MnX (X = Migrad, Simplex, Minimize) minimizers (i.e., instead of the integer
representing the "strategy").
 2025-01-10 11:19:25 +01:00
suter_a 196135fab5 changed default ROOT color kGreen to kGreen+2. 2024-12-14 15:23:58 +01:00
suter_a 532b6f42ff make sure that for non-muSR data errors are not = 0. Will set it to 1, and issue a warning. This prevents chisq to crash. 2024-10-14 14:38:05 +02:00
suter_a 6812f68a8f implemented unary operator for metaData in functions. 2024-10-11 16:39:24 +02:00
suter_a 432c0bd6ec make sure that the run template number has at least 4 digits before proceeding. 2024-09-21 13:10:08 +02:00
ext-mcfadd_r 6263e9aba3 fix batch mode averaged output 
closes issue #63
 2024-09-12 11:02:09 +02:00
suter_a a6a3d26cd2 added the option to write the content of the MINUIT2.OUTPUT ascii file as yaml. This extends the previous commit from Ryan M.L. McFadden. 2024-06-18 12:56:21 +02:00
ext-mcfadd_r 78eb8653ce write the fit results to an easy-to-read/parse yaml file 
This patch adds routines for writing a comprehensive set of fit results (i.e., parameter values, parabolic errors, asymmetric errors, covariances, correlation coefficients, etc.) for an individual `.msr` file to an easy-to-read/parse `.yaml` file.

The main motivation for the code addition is to provide users with easy access to the fit's covariance matrix without the need for "extra" manual effort (e.g., parsing the contents of `MINUIT2.OUTPUT` or `MINUIT2.root`). The other fit quantities are also included for completeness.

Reading/accessing the output is trivial using, for example, the PyYAML Python library (https://github.com/yaml/pyyaml):

```python
import yaml

with open("2125_tf_histo.yaml", "r") as fh:
	results = yaml.load(fh, Loader=yaml.SafeLoader)

cov = results["covariance"]["Field_1"]["Sigma_1"]
```

Note: the naming conventions chosen for the blocks in the `.yaml` output closely follow those used by the iminuit Python library (https://github.com/scikit-hep/iminuit).
 2024-06-18 12:55:32 +02:00
suter_a 45d87bc645 modernize the way how to check/deal with OpenMP. This helps also on the macOS side. 2024-06-07 15:31:34 +02:00
suter_a c9ecca0c19 got rid off some double brackets. 2024-04-20 18:18:32 +02:00
suter_a 1a5561b265 fixed a fruther bracket bug. 2024-04-20 17:52:22 +02:00
suter_a 65066596e8 improved bracket handling in function string generation. 2024-04-20 09:59:23 +02:00
suter_a d66b2f383c make sure that brackets are not lost in the function reconstruct, e.g. 1/(2*parX) is not going over into 1/2*parX. 2024-04-20 09:58:51 +02:00
suter_a 17339e191d updated copyright info. 2024-02-07 15:29:08 +01:00
suter_a fb7a3517e9 added some missing qutation marks musrfit_startup.xml. 2023-12-05 09:34:42 +01:00
suter_a 2eb888874d added some more default search path to default musrfit_startup.xml. 2023-12-05 09:34:35 +01:00
suter_a df926a4d66 add an option to musrfit which allows to replace to musrfit_startup.xml by the default one. 2023-11-17 09:02:40 +01:00
suter_a f72a213bd8 adopted default path/file-name scheme to the current state. 2023-11-10 15:22:16 +01:00
suter_a 18b06267d2 make sure that singleRunMsrFile is a legal pointer before proceeding. 2023-11-09 13:14:56 +01:00
suter_a d96d1f68d5 increased main version to 1.9.2, libPMusr to 1.4.0, and mupp to 1.1.0. 2023-10-25 10:59:25 +02:00
suter_a c2d2307755 switched PRunSingleHistoRRF where possible to smart pointers. 2023-10-25 10:55:59 +02:00
suter_a 6ab344479d switched PRunDataHandler where possible to smart pointers. 2023-10-25 10:55:46 +02:00
suter_a f03be7add9 switched PRunBase where possible to smart pointers. 2023-10-25 10:55:35 +02:00
suter_a 2e9542c796 switched PRgeHandler where possible to smart pointers. 2023-10-25 10:55:24 +02:00
suter_a a66a5e3c70 switched PMusrT0 where possible to smart pointers. 2023-10-25 10:55:10 +02:00
suter_a 282ed68b61 switched PMusrCanvas where possible to smart pointers. 2023-10-25 10:54:59 +02:00
suter_a b01505b07f replaced some raw pointer by smart pointer in PFitter. 2023-10-25 10:54:45 +02:00
suter_a bb8055f3e2 switch to smart pointers in PMsr2Data where possible. 2023-10-25 10:54:28 +02:00
suter_a 5f66baa1e2 switched PFitter to smart pointers. 2023-10-25 10:50:48 +02:00
suter_a 9ef5c5cac6 switched PMsrHandler where possible to smart pointers. 2023-10-25 10:03:18 +02:00
suter_a 17bc497b30 remove one check for Fourier only. 2023-10-25 10:01:41 +02:00
suter_a 1c8c1a8d0f get rid of raw pointers for PFourierCanvas where it makes sense. 2023-10-25 10:01:28 +02:00
suter_a c1ad16d403 more potential musr-data-file paths added. 2023-08-31 10:39:48 +02:00
suter_a bcbe945d84 make sure that exported MusrRoot files have proper stats in the histo objects. 2023-08-31 10:39:20 +02:00
suter_a d43a0df893 improved search run, allowing to look for a specific file format in case the run is saved in multiple different file formats. 2023-08-31 10:38:29 +02:00
suter_a 1850a2c762 allow more flexible dealing with LEM run numbers > 9999. 2023-05-16 09:22:42 +02:00
suter_a 95715dd62d add 5-digit run name template for lem, needed for addRun and dump_header. 2023-05-16 09:22:24 +02:00
suter_a 058759c0bc fixed c++ streaming output flag error. 2023-03-07 12:29:14 +01:00
suter_a c34e711f37 updated the copyright info. 2023-02-17 10:13:48 +01:00
suter_a 3a75ced375 improvement on: allow to draw theory only at the data points for PRunNonMusr. 2023-02-17 10:12:43 +01:00