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936 Commits

Author SHA1 Message Date
ext-mcfadd_r 6263e9aba3 fix batch mode averaged output 
closes issue #63
 2024-09-12 11:02:09 +02:00
suter_a a6a3d26cd2 added the option to write the content of the MINUIT2.OUTPUT ascii file as yaml. This extends the previous commit from Ryan M.L. McFadden. 2024-06-18 12:56:21 +02:00
ext-mcfadd_r 78eb8653ce write the fit results to an easy-to-read/parse yaml file 
This patch adds routines for writing a comprehensive set of fit results (i.e., parameter values, parabolic errors, asymmetric errors, covariances, correlation coefficients, etc.) for an individual `.msr` file to an easy-to-read/parse `.yaml` file.

The main motivation for the code addition is to provide users with easy access to the fit's covariance matrix without the need for "extra" manual effort (e.g., parsing the contents of `MINUIT2.OUTPUT` or `MINUIT2.root`). The other fit quantities are also included for completeness.

Reading/accessing the output is trivial using, for example, the PyYAML Python library (https://github.com/yaml/pyyaml):

```python
import yaml

with open("2125_tf_histo.yaml", "r") as fh:
	results = yaml.load(fh, Loader=yaml.SafeLoader)

cov = results["covariance"]["Field_1"]["Sigma_1"]
```

Note: the naming conventions chosen for the blocks in the `.yaml` output closely follow those used by the iminuit Python library (https://github.com/scikit-hep/iminuit).
 2024-06-18 12:55:32 +02:00
suter_a 45d87bc645 modernize the way how to check/deal with OpenMP. This helps also on the macOS side. 2024-06-07 15:31:34 +02:00
suter_a c9ecca0c19 got rid off some double brackets. 2024-04-20 18:18:32 +02:00
suter_a 1a5561b265 fixed a fruther bracket bug. 2024-04-20 17:52:22 +02:00
suter_a 65066596e8 improved bracket handling in function string generation. 2024-04-20 09:59:23 +02:00
suter_a d66b2f383c make sure that brackets are not lost in the function reconstruct, e.g. 1/(2*parX) is not going over into 1/2*parX. 2024-04-20 09:58:51 +02:00
suter_a 17339e191d updated copyright info. 2024-02-07 15:29:08 +01:00
suter_a fb7a3517e9 added some missing qutation marks musrfit_startup.xml. 2023-12-05 09:34:42 +01:00
suter_a 2eb888874d added some more default search path to default musrfit_startup.xml. 2023-12-05 09:34:35 +01:00
suter_a df926a4d66 add an option to musrfit which allows to replace to musrfit_startup.xml by the default one. 2023-11-17 09:02:40 +01:00
suter_a f72a213bd8 adopted default path/file-name scheme to the current state. 2023-11-10 15:22:16 +01:00
suter_a 18b06267d2 make sure that singleRunMsrFile is a legal pointer before proceeding. 2023-11-09 13:14:56 +01:00
suter_a d96d1f68d5 increased main version to 1.9.2, libPMusr to 1.4.0, and mupp to 1.1.0. 2023-10-25 10:59:25 +02:00
suter_a c2d2307755 switched PRunSingleHistoRRF where possible to smart pointers. 2023-10-25 10:55:59 +02:00
suter_a 6ab344479d switched PRunDataHandler where possible to smart pointers. 2023-10-25 10:55:46 +02:00
suter_a f03be7add9 switched PRunBase where possible to smart pointers. 2023-10-25 10:55:35 +02:00
suter_a 2e9542c796 switched PRgeHandler where possible to smart pointers. 2023-10-25 10:55:24 +02:00
suter_a a66a5e3c70 switched PMusrT0 where possible to smart pointers. 2023-10-25 10:55:10 +02:00
suter_a 282ed68b61 switched PMusrCanvas where possible to smart pointers. 2023-10-25 10:54:59 +02:00
suter_a b01505b07f replaced some raw pointer by smart pointer in PFitter. 2023-10-25 10:54:45 +02:00
suter_a bb8055f3e2 switch to smart pointers in PMsr2Data where possible. 2023-10-25 10:54:28 +02:00
suter_a 5f66baa1e2 switched PFitter to smart pointers. 2023-10-25 10:50:48 +02:00
suter_a 9ef5c5cac6 switched PMsrHandler where possible to smart pointers. 2023-10-25 10:03:18 +02:00
suter_a 17bc497b30 remove one check for Fourier only. 2023-10-25 10:01:41 +02:00
suter_a 1c8c1a8d0f get rid of raw pointers for PFourierCanvas where it makes sense. 2023-10-25 10:01:28 +02:00
suter_a c1ad16d403 more potential musr-data-file paths added. 2023-08-31 10:39:48 +02:00
suter_a bcbe945d84 make sure that exported MusrRoot files have proper stats in the histo objects. 2023-08-31 10:39:20 +02:00
suter_a d43a0df893 improved search run, allowing to look for a specific file format in case the run is saved in multiple different file formats. 2023-08-31 10:38:29 +02:00
suter_a 1850a2c762 allow more flexible dealing with LEM run numbers > 9999. 2023-05-16 09:22:42 +02:00
suter_a 95715dd62d add 5-digit run name template for lem, needed for addRun and dump_header. 2023-05-16 09:22:24 +02:00
suter_a 058759c0bc fixed c++ streaming output flag error. 2023-03-07 12:29:14 +01:00
suter_a c34e711f37 updated the copyright info. 2023-02-17 10:13:48 +01:00
suter_a 3a75ced375 improvement on: allow to draw theory only at the data points for PRunNonMusr. 2023-02-17 10:12:43 +01:00
suter_a cb53b1b67b allow to draw theory only at the data points for PRunNonMusr. 2023-02-17 10:12:26 +01:00
suter_a c79b74e241 fixed formatting issue. 2023-02-17 10:11:16 +01:00
suter_a 9ce9e9f0a3 define tag energy_vec with attributes start, stop, step to define rge energy vector in a compact way in startup.xml files. 2023-02-17 10:09:33 +01:00
martins_m 2db36b2e3d implementation of depth step fits 2023-02-17 10:06:06 +01:00
suter_a 6e30e7e71f add reading routine for the dat-files as generate from msr2data. Use case: special 'non muSR fit' type. 2023-02-17 10:02:02 +01:00
suter_a de5763d5cc start adding CSV like data reading routine with the FileFormat label DAT. 2023-02-17 10:01:35 +01:00
suter_a f42306e42b fix of an old copy/paste error! 2023-01-10 16:18:44 +01:00
suter_a a356534e6a updated the copyright info. 2023-01-05 11:04:42 +01:00
suter_a 62c3600fb7 added some more technical docu to PMsr2Data. 2022-12-04 10:50:35 +01:00
suter_a 8a8046d28a add energy_vect tag which allows a more compact startup xml-file if the rge-files are equally spaced in energy. 2022-11-25 10:22:05 +01:00
suter_a e32aa61643 replaced sprintf -> snprintf throughout. 2022-11-25 10:16:20 +01:00
suter_a d0923d75b9 fixed bug in msr2data global+ according to issue #33 reported on bitbucket. 2022-08-09 08:21:53 +02:00
suter_a c36552708e more work towards a modern cmake. As a first example reworked FFTW3 binding. 2022-07-06 14:52:24 +02:00
suter_a 843ad88498 adopted to new PSI-BIN lib. Added facility for finding runs via musrfit_startup.xml templates. 2022-05-29 15:44:24 +02:00
suter_a b72ec88783 add search facility for runs via musrfit_startup.xml template entries. 2022-05-29 15:36:51 +02:00