From dd02b07c5690789914cba2524309bd1ada59daac Mon Sep 17 00:00:00 2001 From: Andreas Suter Date: Wed, 6 Oct 2021 15:24:00 +0200 Subject: [PATCH] update of doku for the dks6 branch. --- doc/html/.buildinfo | 4 - doc/html/_downloads/Makefile.TMyLibrary | 60 ++ doc/html/_static/ajax-loader.gif | Bin 0 -> 673 bytes doc/html/_static/alert_info_32.png | Bin 0 -> 1168 bytes doc/html/_static/alert_warning_32.png | Bin 0 -> 1060 bytes doc/html/_static/bg-page.png | Bin 0 -> 164 bytes doc/html/_static/bullet_orange.png | Bin 0 -> 365 bytes doc/html/_static/comment-bright.png | Bin 0 -> 3500 bytes doc/html/_static/comment-close.png | Bin 0 -> 3578 bytes doc/html/_static/comment.png | Bin 0 -> 3445 bytes doc/html/_static/down-pressed.png | Bin 0 -> 368 bytes doc/html/_static/down.png | Bin 0 -> 363 bytes doc/html/_static/haiku.css | 371 +++++++++++ doc/html/_static/up-pressed.png | Bin 0 -> 372 bytes doc/html/_static/up.png | Bin 0 -> 363 bytes doc/html/_static/websupport.js | 808 ++++++++++++++++++++++++ doc/html/acknowledgement.html | 104 +-- doc/html/any2many.html | 104 +-- doc/html/bugtracking.html | 91 +-- doc/html/cite.html | 104 +-- doc/html/genindex.html | 74 +-- doc/html/index.html | 95 +-- doc/html/msr2data.html | 122 +--- doc/html/mupp.html | 115 +--- doc/html/musr-root.html | 133 +--- doc/html/musredit.html | 127 +--- doc/html/objects.inv | Bin 2047 -> 2041 bytes doc/html/search.html | 60 +- doc/html/searchindex.js | 2 +- doc/html/setup-dks.html | 123 +--- doc/html/setup-standard.html | 168 +---- doc/html/tutorial.html | 119 +--- doc/html/user-libs.html | 119 +--- doc/html/user-manual.html | 253 +++----- 34 files changed, 1786 insertions(+), 1370 deletions(-) delete mode 100644 doc/html/.buildinfo create mode 100644 doc/html/_downloads/Makefile.TMyLibrary create mode 100644 doc/html/_static/ajax-loader.gif create mode 100644 doc/html/_static/alert_info_32.png create mode 100644 doc/html/_static/alert_warning_32.png create mode 100644 doc/html/_static/bg-page.png create mode 100644 doc/html/_static/bullet_orange.png create mode 100644 doc/html/_static/comment-bright.png create mode 100644 doc/html/_static/comment-close.png create mode 100644 doc/html/_static/comment.png create mode 100644 doc/html/_static/down-pressed.png create mode 100644 doc/html/_static/down.png create mode 100644 doc/html/_static/haiku.css create mode 100644 doc/html/_static/up-pressed.png create mode 100644 doc/html/_static/up.png create mode 100644 doc/html/_static/websupport.js diff --git a/doc/html/.buildinfo b/doc/html/.buildinfo deleted file mode 100644 index 8af19b69..00000000 --- a/doc/html/.buildinfo +++ /dev/null @@ -1,4 +0,0 @@ -# Sphinx build info version 1 -# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 3b34bde782d0a2e964b32bc698e5a292 -tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/doc/html/_downloads/Makefile.TMyLibrary b/doc/html/_downloads/Makefile.TMyLibrary new file mode 100644 index 00000000..73a85c8e --- /dev/null +++ b/doc/html/_downloads/Makefile.TMyLibrary @@ -0,0 +1,60 @@ +#--------------------------------------------------- +# get compilation flags from root-config + +ROOTCFLAGS = $(shell $(ROOTSYS)/bin/root-config --cflags) + +#--------------------------------------------------- + +OS = LINUX +CXX = g++ +CXXFLAGS = -O3 -Wall -Wno-trigraphs -fPIC +LOCALINCLUDE = . +ROOTINCLUDE = $(ROOTSYS)/include +INCLUDES = -I$(LOCALINCLUDE) -I$(ROOTINCLUDE) +LD = g++ +LDFLAGS = +SOFLAGS = -O -shared + +# the output from the root-config script: +CXXFLAGS += $(ROOTCFLAGS) +LDFLAGS += + +# some definitions: headers (used to generate *Dict* stuff), sources, objects,... +OBJS = +OBJS += TMyFunction.o TMyLibraryDict.o + +SHLIB = libTMyLibrary.so + +# make the shared lib: +# +all: $(SHLIB) + +$(SHLIB): $(OBJS) + @echo "---> Building shared library $(SHLIB) ..." + /bin/rm -f $(SHLIB) + $(LD) $(OBJS) $(SOFLAGS) -o $(SHLIB) + @echo "done" + +# clean up: remove all object file (and core files) +# semicolon needed to tell make there is no source +# for this target! +# +clean:; @rm -f $(OBJS) *Dict* core* + @echo "---> removing $(OBJS)" + +# +$(OBJS): %.o: %.cpp + $(CXX) $(INCLUDES) $(CXXFLAGS) -c $< + +# Generate the ROOT CINT dictionary + +TMyLibraryDict.cpp: TMyFunction.h TMyLibraryLinkDef.h + @echo "Generating dictionary $@..." + rootcint -f $@ -c -p -I$(ROOTINCLUDE) $^ + +install: all + @echo "Installing shared lib: libTApproximation.so" +ifeq ($(OS),LINUX) + cp -pv $(SHLIB) $(ROOTSYS)/lib + cp -pv $(LOCALINCLUDE)/*.h $(ROOTSYS)/include +endif diff --git a/doc/html/_static/ajax-loader.gif b/doc/html/_static/ajax-loader.gif new file mode 100644 index 0000000000000000000000000000000000000000..61faf8cab23993bd3e1560bff0668bd628642330 GIT binary patch literal 673 zcmZ?wbhEHb6krfw_{6~Q|Nno%(3)e{?)x>&1u}A`t?OF7Z|1gRivOgXi&7IyQd1Pl zGfOfQ60;I3a`F>X^fL3(@);C=vM_KlFfb_o=k{|A33hf2a5d61U}gjg=>Rd%XaNQW zW@Cw{|b%Y*pl8F?4B9 zlo4Fz*0kZGJabY|>}Okf0}CCg{u4`zEPY^pV?j2@h+|igy0+Kz6p;@SpM4s6)XEMg z#3Y4GX>Hjlml5ftdH$4x0JGdn8~MX(U~_^d!Hi)=HU{V%g+mi8#UGbE-*ao8f#h+S z2a0-5+vc7MU$e-NhmBjLIC1v|)9+Im8x1yacJ7{^tLX(ZhYi^rpmXm0`@ku9b53aN zEXH@Y3JaztblgpxbJt{AtE1ad1Ca>{v$rwwvK(>{m~Gf_=-Ro7Fk{#;i~+{{>QtvI yb2P8Zac~?~=sRA>$6{!(^3;ZP0TPFR(G_-UDU(8Jl0?(IXu$~#4A!880|o%~Al1tN literal 0 HcmV?d00001 diff --git a/doc/html/_static/alert_info_32.png b/doc/html/_static/alert_info_32.png new file mode 100644 index 0000000000000000000000000000000000000000..05b4fe898c39c93ca6041650c49dcb67e6595432 GIT binary patch literal 1168 zcmV;B1aJF^P)KB1(GEo2OU5dU1MjixU?b4HlPyU1Z#btg*bwF1uutH8k9WJ2h0&wD~{( zq-o+GmX3s=tgtkx6sd&#N1|j3;?zy1&gP$OUftcd7w1f`OJdNyJ@D}3at=J7^L(D) z@0<(&9%FzO;23Zx%%eaiyjIkB8aP38t}OABtn!#B-zOp)1W5rW!h4DmV}O&y+vS@2 z<;@zBYwDM!&dcJz3U7yC(lA6(I*}ndPi}fv)oZ0Cd!*`hlAE5D)tnL~-wInJs8Xn- z;BnNdevvmjC_bcM^=3JVi=2-_f-A>c?c0J1jWPq`Vvli%yW49O;*6{X(`TPLhl zK(;sl6^CREJ#sUp$Q;Sdl&qmgmN+K-F9pkmEh-wo5u)2R>B4+r5#coof14;hDk8hWt`r!+Yq}!Wl9NC4uHs9xs$6|j@dZ69X}Y9HxwF+k)?t)1qT3l0i4`B zS-FO+EZr|l-ja>KE_go}L|TKhfRBm-03bItE7x#aR@X0^a8o3DLx6>XMS>NAkBbN} zB`d4HEvxO5Ro@U5f8_xz5v&w!C?Y`PZP}y&*~DA2s_SChwGd#~|7yX;q5wPs1no}; z?YGKa5x_)xH3&{i;jQ?V)QRoC9D^p2cr+XiLnf&1Gpeoe%#hW>{S zpiczbhXK++azwrcyb2_M*TYNzF9A>fW9VXwb4q@i)0>~?lxiQmxBc$E&ShZI7@+!u>A1Q^G$hqUVNi2L-!F3-B`V z_``@V^jc7ez_8@Gr@$>Q-6v4VBO7S6NH1T<#9jNX7HxMPN6U7T%8{a#2J&1z&|{Lvf4eM;!PKn6vuz>4R0vJ5GZ9JCSY|{n-F$v?83&>Rb%7EO*d_5V&cw3mu}oBb)lFvibm5k zsqv%1bYY?~*iemz27y8oC@oZ47>5C-;LLQs-n;j>n0Yg=wt2%$J14n|$$fMGzjN;Y z-gBXPSimV@8HfYl0dE3_0do)kuRC1f+rz^j$m;5{?C!*5X8Jd|c;TF!8G2oS4dB~G z0o@)R9+uVBRS|JSbWTL4MAVjub5F!xl-6+k&44rO(tZvAQiZUvlT_R22#!7l#xhSA&zfKv9# z1E8JCz%75IQCpyj*^A?W$d>?g`7;AB8UmoTC-c(&yJi&aQKwNAa6IlWl!m(n>Y+~? 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All rights reserved. + * Distributed under the terms of the MIT License. + * + * Authors: + * Francois Revol + * Stephan Assmus + * Braden Ewing + * Humdinger + * + * :copyright: Copyright 2007-2014 by the Sphinx team, see AUTHORS. + * :license: BSD, see LICENSE for details. + * + */ + +@import url("basic.css"); + +html { + margin: 0px; + padding: 0px; + background: #FFF url(bg-page.png) top left repeat-x; +} + +body { + line-height: 1.5; + margin: auto; + padding: 0px; + font-family: "DejaVu Sans", Arial, Helvetica, sans-serif; + min-width: 59em; + max-width: 70em; + color: #333333; +} + +div.footer { + padding: 8px; + font-size: 11px; + text-align: center; + letter-spacing: 0.5px; +} + +/* link colors and text decoration */ + +a:link { + font-weight: bold; + text-decoration: none; + color: #dc3c01; +} + +a:visited { + font-weight: bold; + text-decoration: none; + color: #892601; +} + +a:hover, a:active { + text-decoration: underline; + color: #ff4500; +} + +/* Some headers act as anchors, don't give them a hover effect */ + +h1 a:hover, a:active { + text-decoration: none; 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+ border: 0; + margin-top: -3px; + padding: 0; +} + +div.header img.rightlogo { + float: right; +} + + +div.title { + font-size: 1.3em; + font-weight: bold; + color: #0c3762; + border-bottom: dotted thin #e0e0e0; + margin-bottom: 25px; +} +div.topnav { + /* background: #e0e0e0; */ +} +div.topnav p { + margin-top: 0; + margin-left: 40px; + margin-right: 40px; + margin-bottom: 0px; + text-align: right; + font-size: 0.8em; +} +div.bottomnav { + background: #eeeeee; +} +div.bottomnav p { + margin-right: 40px; + text-align: right; + font-size: 0.8em; +} + +a.uplink { + font-weight: normal; +} + + +/* contents box */ + +table.index { + margin: 0px 0px 30px 30px; + padding: 1px; + border-width: 1px; + border-style: dotted; + border-color: #e0e0e0; +} +table.index tr.heading { + background-color: #e0e0e0; + text-align: center; + font-weight: bold; + font-size: 1.1em; +} +table.index tr.index { + background-color: #eeeeee; +} +table.index td { + padding: 5px 20px; +} + +table.index a:link, table.index a:visited { + font-weight: normal; + text-decoration: none; + color: #dc3c01; +} +table.index a:hover, table.index a:active { + text-decoration: underline; + color: #ff4500; +} + + +/* Haiku User Guide styles and layout */ + +/* Rounded corner boxes */ +/* Common declarations */ +div.admonition { + -webkit-border-radius: 10px; + -khtml-border-radius: 10px; + -moz-border-radius: 10px; + border-radius: 10px; + border-style: dotted; + border-width: thin; + border-color: #dcdcdc; + padding: 10px 15px 10px 15px; + margin-bottom: 15px; + margin-top: 15px; +} +div.note { + padding: 10px 15px 10px 80px; + background: #e4ffde url(alert_info_32.png) 15px 15px no-repeat; + min-height: 42px; +} +div.warning { + padding: 10px 15px 10px 80px; + background: #fffbc6 url(alert_warning_32.png) 15px 15px no-repeat; + min-height: 42px; +} +div.seealso { + background: #e4ffde; +} + +/* More layout and styles */ +h1 { + font-size: 1.3em; + font-weight: bold; + color: #0c3762; + border-bottom: dotted thin #e0e0e0; + margin-top: 30px; +} + +h2 { + font-size: 1.2em; 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+ openReply($(this).attr('id').substring(2)); + }); + $('a.close-reply').live("click", function(event) { + event.preventDefault(); + closeReply($(this).attr('id').substring(2)); + }); + $('a.sort-option').live("click", function(event) { + event.preventDefault(); + handleReSort($(this)); + }); + $('a.show-proposal').live("click", function(event) { + event.preventDefault(); + showProposal($(this).attr('id').substring(2)); + }); + $('a.hide-proposal').live("click", function(event) { + event.preventDefault(); + hideProposal($(this).attr('id').substring(2)); + }); + $('a.show-propose-change').live("click", function(event) { + event.preventDefault(); + showProposeChange($(this).attr('id').substring(2)); + }); + $('a.hide-propose-change').live("click", function(event) { + event.preventDefault(); + hideProposeChange($(this).attr('id').substring(2)); + }); + $('a.accept-comment').live("click", function(event) { + event.preventDefault(); + acceptComment($(this).attr('id').substring(2)); + }); + $('a.delete-comment').live("click", function(event) { + event.preventDefault(); + deleteComment($(this).attr('id').substring(2)); + }); + $('a.comment-markup').live("click", function(event) { + event.preventDefault(); + toggleCommentMarkupBox($(this).attr('id').substring(2)); + }); + } + + /** + * Set comp, which is a comparator function used for sorting and + * inserting comments into the list. + */ + function setComparator() { + // If the first three letters are "asc", sort in ascending order + // and remove the prefix. + if (by.substring(0,3) == 'asc') { + var i = by.substring(3); + comp = function(a, b) { return a[i] - b[i]; }; + } else { + // Otherwise sort in descending order. + comp = function(a, b) { return b[by] - a[by]; }; + } + + // Reset link styles and format the selected sort option. + $('a.sel').attr('href', '#').removeClass('sel'); + $('a.by' + by).removeAttr('href').addClass('sel'); + } + + /** + * Create a comp function. If the user has preferences stored in + * the sortBy cookie, use those, otherwise use the default. + */ + function initComparator() { + by = 'rating'; // Default to sort by rating. + // If the sortBy cookie is set, use that instead. + if (document.cookie.length > 0) { + var start = document.cookie.indexOf('sortBy='); + if (start != -1) { + start = start + 7; + var end = document.cookie.indexOf(";", start); + if (end == -1) { + end = document.cookie.length; + by = unescape(document.cookie.substring(start, end)); + } + } + } + setComparator(); + } + + /** + * Show a comment div. + */ + function show(id) { + $('#ao' + id).hide(); + $('#ah' + id).show(); + var context = $.extend({id: id}, opts); + var popup = $(renderTemplate(popupTemplate, context)).hide(); + popup.find('textarea[name="proposal"]').hide(); + popup.find('a.by' + by).addClass('sel'); + var form = popup.find('#cf' + id); + form.submit(function(event) { + event.preventDefault(); + addComment(form); + }); + $('#s' + id).after(popup); + popup.slideDown('fast', function() { + getComments(id); + }); + } + + /** + * Hide a comment div. + */ + function hide(id) { + $('#ah' + id).hide(); + $('#ao' + id).show(); + var div = $('#sc' + id); + div.slideUp('fast', function() { + div.remove(); + }); + } + + /** + * Perform an ajax request to get comments for a node + * and insert the comments into the comments tree. + */ + function getComments(id) { + $.ajax({ + type: 'GET', + url: opts.getCommentsURL, + data: {node: id}, + success: function(data, textStatus, request) { + var ul = $('#cl' + id); + var speed = 100; + $('#cf' + id) + .find('textarea[name="proposal"]') + .data('source', data.source); + + if (data.comments.length === 0) { + ul.html('
  • No comments yet.
  • '); + ul.data('empty', true); + } else { + // If there are comments, sort them and put them in the list. + var comments = sortComments(data.comments); + speed = data.comments.length * 100; + appendComments(comments, ul); + ul.data('empty', false); + } + $('#cn' + id).slideUp(speed + 200); + ul.slideDown(speed); + }, + error: function(request, textStatus, error) { + showError('Oops, there was a problem retrieving the comments.'); + }, + dataType: 'json' + }); + } + + /** + * Add a comment via ajax and insert the comment into the comment tree. + */ + function addComment(form) { + var node_id = form.find('input[name="node"]').val(); + var parent_id = form.find('input[name="parent"]').val(); + var text = form.find('textarea[name="comment"]').val(); + var proposal = form.find('textarea[name="proposal"]').val(); + + if (text == '') { + showError('Please enter a comment.'); + return; + } + + // Disable the form that is being submitted. + form.find('textarea,input').attr('disabled', 'disabled'); + + // Send the comment to the server. + $.ajax({ + type: "POST", + url: opts.addCommentURL, + dataType: 'json', + data: { + node: node_id, + parent: parent_id, + text: text, + proposal: proposal + }, + success: function(data, textStatus, error) { + // Reset the form. + if (node_id) { + hideProposeChange(node_id); + } + form.find('textarea') + .val('') + .add(form.find('input')) + .removeAttr('disabled'); + var ul = $('#cl' + (node_id || parent_id)); + if (ul.data('empty')) { + $(ul).empty(); + ul.data('empty', false); + } + insertComment(data.comment); + var ao = $('#ao' + node_id); + ao.find('img').attr({'src': opts.commentBrightImage}); + if (node_id) { + // if this was a "root" comment, remove the commenting box + // (the user can get it back by reopening the comment popup) + $('#ca' + node_id).slideUp(); + } + }, + error: function(request, textStatus, error) { + form.find('textarea,input').removeAttr('disabled'); + showError('Oops, there was a problem adding the comment.'); + } + }); + } + + /** + * Recursively append comments to the main comment list and children + * lists, creating the comment tree. + */ + function appendComments(comments, ul) { + $.each(comments, function() { + var div = createCommentDiv(this); + ul.append($(document.createElement('li')).html(div)); + appendComments(this.children, div.find('ul.comment-children')); + // To avoid stagnating data, don't store the comments children in data. + this.children = null; + div.data('comment', this); + }); + } + + /** + * After adding a new comment, it must be inserted in the correct + * location in the comment tree. + */ + function insertComment(comment) { + var div = createCommentDiv(comment); + + // To avoid stagnating data, don't store the comments children in data. + comment.children = null; + div.data('comment', comment); + + var ul = $('#cl' + (comment.node || comment.parent)); + var siblings = getChildren(ul); + + var li = $(document.createElement('li')); + li.hide(); + + // Determine where in the parents children list to insert this comment. + for(i=0; i < siblings.length; i++) { + if (comp(comment, siblings[i]) <= 0) { + $('#cd' + siblings[i].id) + .parent() + .before(li.html(div)); + li.slideDown('fast'); + return; + } + } + + // If we get here, this comment rates lower than all the others, + // or it is the only comment in the list. + ul.append(li.html(div)); + li.slideDown('fast'); + } + + function acceptComment(id) { + $.ajax({ + type: 'POST', + url: opts.acceptCommentURL, + data: {id: id}, + success: function(data, textStatus, request) { + $('#cm' + id).fadeOut('fast'); + $('#cd' + id).removeClass('moderate'); + }, + error: function(request, textStatus, error) { + showError('Oops, there was a problem accepting the comment.'); + } + }); + } + + function deleteComment(id) { + $.ajax({ + type: 'POST', + url: opts.deleteCommentURL, + data: {id: id}, + success: function(data, textStatus, request) { + var div = $('#cd' + id); + if (data == 'delete') { + // Moderator mode: remove the comment and all children immediately + div.slideUp('fast', function() { + div.remove(); + }); + return; + } + // User mode: only mark the comment as deleted + div + .find('span.user-id:first') + .text('[deleted]').end() + .find('div.comment-text:first') + .text('[deleted]').end() + .find('#cm' + id + ', #dc' + id + ', #ac' + id + ', #rc' + id + + ', #sp' + id + ', #hp' + id + ', #cr' + id + ', #rl' + id) + .remove(); + var comment = div.data('comment'); + comment.username = '[deleted]'; + comment.text = '[deleted]'; + div.data('comment', comment); + }, + error: function(request, textStatus, error) { + showError('Oops, there was a problem deleting the comment.'); + } + }); + } + + function showProposal(id) { + $('#sp' + id).hide(); + $('#hp' + id).show(); + $('#pr' + id).slideDown('fast'); + } + + function hideProposal(id) { + $('#hp' + id).hide(); + $('#sp' + id).show(); + $('#pr' + id).slideUp('fast'); + } + + function showProposeChange(id) { + $('#pc' + id).hide(); + $('#hc' + id).show(); + var textarea = $('#pt' + id); + textarea.val(textarea.data('source')); + $.fn.autogrow.resize(textarea[0]); + textarea.slideDown('fast'); + } + + function hideProposeChange(id) { + $('#hc' + id).hide(); + $('#pc' + id).show(); + var textarea = $('#pt' + id); + textarea.val('').removeAttr('disabled'); + textarea.slideUp('fast'); + } + + function toggleCommentMarkupBox(id) { + $('#mb' + id).toggle(); + } + + /** Handle when the user clicks on a sort by link. */ + function handleReSort(link) { + var classes = link.attr('class').split(/\s+/); + for (var i=0; iThank you! Your comment will show up ' + + 'once it is has been approved by a moderator.'); + } + // Prettify the comment rating. + comment.pretty_rating = comment.rating + ' point' + + (comment.rating == 1 ? '' : 's'); + // Make a class (for displaying not yet moderated comments differently) + comment.css_class = comment.displayed ? '' : ' moderate'; + // Create a div for this comment. + var context = $.extend({}, opts, comment); + var div = $(renderTemplate(commentTemplate, context)); + + // If the user has voted on this comment, highlight the correct arrow. + if (comment.vote) { + var direction = (comment.vote == 1) ? 'u' : 'd'; + div.find('#' + direction + 'v' + comment.id).hide(); + div.find('#' + direction + 'u' + comment.id).show(); + } + + if (opts.moderator || comment.text != '[deleted]') { + div.find('a.reply').show(); + if (comment.proposal_diff) + div.find('#sp' + comment.id).show(); + if (opts.moderator && !comment.displayed) + div.find('#cm' + comment.id).show(); + if (opts.moderator || (opts.username == comment.username)) + div.find('#dc' + comment.id).show(); + } + return div; + } + + /** + * A simple template renderer. Placeholders such as <%id%> are replaced + * by context['id'] with items being escaped. Placeholders such as <#id#> + * are not escaped. + */ + function renderTemplate(template, context) { + var esc = $(document.createElement('div')); + + function handle(ph, escape) { + var cur = context; + $.each(ph.split('.'), function() { + cur = cur[this]; + }); + return escape ? esc.text(cur || "").html() : cur; + } + + return template.replace(/<([%#])([\w\.]*)\1>/g, function() { + return handle(arguments[2], arguments[1] == '%' ? true : false); + }); + } + + /** Flash an error message briefly. */ + function showError(message) { + $(document.createElement('div')).attr({'class': 'popup-error'}) + .append($(document.createElement('div')) + .attr({'class': 'error-message'}).text(message)) + .appendTo('body') + .fadeIn("slow") + .delay(2000) + .fadeOut("slow"); + } + + /** Add a link the user uses to open the comments popup. */ + $.fn.comment = function() { + return this.each(function() { + var id = $(this).attr('id').substring(1); + var count = COMMENT_METADATA[id]; + var title = count + ' comment' + (count == 1 ? '' : 's'); + var image = count > 0 ? opts.commentBrightImage : opts.commentImage; + var addcls = count == 0 ? ' nocomment' : ''; + $(this) + .append( + $(document.createElement('a')).attr({ + href: '#', + 'class': 'sphinx-comment-open' + addcls, + id: 'ao' + id + }) + .append($(document.createElement('img')).attr({ + src: image, + alt: 'comment', + title: title + })) + .click(function(event) { + event.preventDefault(); + show($(this).attr('id').substring(2)); + }) + ) + .append( + $(document.createElement('a')).attr({ + href: '#', + 'class': 'sphinx-comment-close hidden', + id: 'ah' + id + }) + .append($(document.createElement('img')).attr({ + src: opts.closeCommentImage, + alt: 'close', + title: 'close' + })) + .click(function(event) { + event.preventDefault(); + hide($(this).attr('id').substring(2)); + }) + ); + }); + }; + + var opts = { + processVoteURL: '/_process_vote', + addCommentURL: '/_add_comment', + getCommentsURL: '/_get_comments', + acceptCommentURL: '/_accept_comment', + deleteCommentURL: '/_delete_comment', + commentImage: '/static/_static/comment.png', + closeCommentImage: '/static/_static/comment-close.png', + loadingImage: '/static/_static/ajax-loader.gif', + commentBrightImage: '/static/_static/comment-bright.png', + upArrow: '/static/_static/up.png', + downArrow: '/static/_static/down.png', + upArrowPressed: '/static/_static/up-pressed.png', + downArrowPressed: '/static/_static/down-pressed.png', + voting: false, + moderator: false + }; + + if (typeof COMMENT_OPTIONS != "undefined") { + opts = jQuery.extend(opts, COMMENT_OPTIONS); + } + + var popupTemplate = '\ +
    \ +

    \ + Sort by:\ + best rated\ + newest\ + oldest\ +

    \ +
    Comments
    \ +
    \ + loading comments...
    \ +
      \ +
      \ +

      Add a comment\ + (markup):

      \ +
      \ + reStructured text markup: *emph*, **strong**, \ + ``code``, \ + code blocks: :: and an indented block after blank line
      \ +
      \ + \ +

      \ + \ + Propose a change ▹\ + \ + \ + Propose a change ▿\ + \ +

      \ + \ + \ + \ + \ +
      \ +
      \ +
      '; + + var commentTemplate = '\ +
      \ +
      \ +
      \ + \ + \ + \ + \ + \ + \ +
      \ +
      \ + \ + \ + \ + \ + \ + \ +
      \ +
      \ +
      \ +

      \ + <%username%>\ + <%pretty_rating%>\ + <%time.delta%>\ +

      \ +
      <#text#>
      \ +

      \ + \ + reply ▿\ + proposal ▹\ + proposal ▿\ + \ + \ +

      \ +
      \
      +<#proposal_diff#>\
      +        
      \ +
        \ +
        \ +
        \ +
        \ + '; + + var replyTemplate = '\ +
      • \ +
        \ +
        \ + \ + \ + \ + \ + \ +
        \ +
        \ +
      • '; + + $(document).ready(function() { + init(); + }); +})(jQuery); + +$(document).ready(function() { + // add comment anchors for all paragraphs that are commentable + $('.sphinx-has-comment').comment(); + + // highlight search words in search results + $("div.context").each(function() { + var params = $.getQueryParameters(); + var terms = (params.q) ? params.q[0].split(/\s+/) : []; + var result = $(this); + $.each(terms, function() { + result.highlightText(this.toLowerCase(), 'highlighted'); + }); + }); + + // directly open comment window if requested + var anchor = document.location.hash; + if (anchor.substring(0, 9) == '#comment-') { + $('#ao' + anchor.substring(9)).click(); + document.location.hash = '#s' + anchor.substring(9); + } +}); diff --git a/doc/html/acknowledgement.html b/doc/html/acknowledgement.html index cca02138..041707dd 100644 --- a/doc/html/acknowledgement.html +++ b/doc/html/acknowledgement.html @@ -6,15 +6,15 @@ - Acknowledgements — musrfit 1.7.4 documentation + Acknowledgements — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        Acknowledgements

        +
        +
        + +

        + «  MusrRoot - an Extensible Open File Format for μSR +   ::   + Contents +   ::   + Bugtracking  » +

        -
        -
        -
        -
        - +
        +
        + +

        Acknowledgements

        @@ -67,57 +64,22 @@ extremely competent way to deal with his projects as well as to deal with the ch
        -
        -
        -
        -
        -

        Previous topic

        -

        MusrRoot - an Extensible Open File Format for μSR

        -

        Next topic

        -

        Bugtracking

        -

        This Page

        - - - -
        +
        + +

        + «  MusrRoot - an Extensible Open File Format for μSR +   ::   + Contents +   ::   + Bugtracking  » +

        +
        -
        -
        - + diff --git a/doc/html/any2many.html b/doc/html/any2many.html index 1ef80639..8998f230 100644 --- a/doc/html/any2many.html +++ b/doc/html/any2many.html @@ -6,15 +6,15 @@ - any2many - a Universal μSR-file-format converter — musrfit 1.7.4 documentation + any2many - a Universal μSR-file-format converter — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        any2many - a Universal μSR-file-format converter

        +
        +
        + +

        + «  msr2data - A Program for Automatically Processing Multiple musrfit msr Files +   ::   + Contents +   ::   + MusrRoot - an Extensible Open File Format for μSR  » +

        -
        -
        -
        -
        - +
        +
        + +

        any2many - a Universal μSR-file-format converter

        any2many allows to convert most μSR-file-formats from one to the other. @@ -57,57 +54,22 @@ For a detailed description see -

        -

        Previous topic

        -

        msr2data - A Program for Automatically Processing Multiple musrfit msr Files

        -

        Next topic

        -

        MusrRoot - an Extensible Open File Format for μSR

        -

        This Page

        - - - -
        + -
        -
        - + diff --git a/doc/html/bugtracking.html b/doc/html/bugtracking.html index f84ef203..564638dc 100644 --- a/doc/html/bugtracking.html +++ b/doc/html/bugtracking.html @@ -6,15 +6,15 @@ - Bugtracking — musrfit 1.7.4 documentation + Bugtracking — musrfit 1.7.6 documentation - + - + - + +
        + +

        + «  Acknowledgements +   ::   + Contents +

        -
        -
        -
        -
        - +
        +
        + +

        Bugtracking

        For reporting bugs or requesting new features and improvements please use @@ -54,51 +52,20 @@ or send an e-mail to A. Suter at PSI.

        -
        -
        -
        -
        -

        Previous topic

        -

        Acknowledgements

        -

        This Page

        - - - -
        +
        + +

        + «  Acknowledgements +   ::   + Contents +

        +
        -
        -
        - + diff --git a/doc/html/cite.html b/doc/html/cite.html index 0d8517f3..9320e3d2 100644 --- a/doc/html/cite.html +++ b/doc/html/cite.html @@ -6,15 +6,15 @@ - How to Cite musrfit? — musrfit 1.7.4 documentation + How to Cite musrfit? — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        How to Cite musrfit?

        +
        +
        + +

        + «  Welcome to the musrfit documentation! +   ::   + Contents +   ::   + Tutorial for musrfit  » +

        -
        -
        -
        -
        - +
        +
        + +

        How to Cite musrfit?

        Since quite some effort is going into the development and maintenance of the musrfit package, you should at least acknowledge it in your publication if you have used it to analyze your data. Even better of course is to cite it properly by the reference given beneath

        @@ -69,57 +66,22 @@
        -
        -
        -
        -
        -

        Previous topic

        -

        Welcome to the musrfit documentation!

        -

        Next topic

        -

        Tutorial for musrfit

        -

        This Page

        - - - -
        +
        + +

        + «  Welcome to the musrfit documentation! +   ::   + Contents +   ::   + Tutorial for musrfit  » +

        +
        -
        -
        - + diff --git a/doc/html/genindex.html b/doc/html/genindex.html index 0b228369..3a85a9e2 100644 --- a/doc/html/genindex.html +++ b/doc/html/genindex.html @@ -7,15 +7,15 @@ - Index — musrfit 1.7.4 documentation + Index — musrfit 1.7.6 documentation - + - + - + +
        + +

        + Contents +

        -
        -
        -
        -
        - +
        +
        + +

        Index

        @@ -963,43 +962,18 @@ -
        -
        -
        -
        +
        + +

        + Contents +

        - - - - -
        -
        -
        - + diff --git a/doc/html/index.html b/doc/html/index.html index 9d70cda9..7a96d325 100644 --- a/doc/html/index.html +++ b/doc/html/index.html @@ -6,15 +6,15 @@ - Welcome to the musrfit documentation! — musrfit 1.7.4 documentation + Welcome to the musrfit documentation! — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        Welcome to the musrfit documentation!

        +
        +
        + +

        + Contents +   ::   + How to Cite musrfit?  » +

        -
        -
        -
        -
        - +
        +
        + +

        Welcome to the musrfit documentation!

        @@ -135,57 +133,20 @@
        -
        -
        -
        -
        -

        Table Of Contents

        - +
        + +

        + Contents +   ::   + How to Cite musrfit?  » +

        -

        Next topic

        -

        How to Cite musrfit?

        -

        This Page

        - - - -
        -
        -
        - + diff --git a/doc/html/msr2data.html b/doc/html/msr2data.html index 69ba1fab..68731adf 100644 --- a/doc/html/msr2data.html +++ b/doc/html/msr2data.html @@ -6,15 +6,15 @@ - msr2data - A Program for Automatically Processing Multiple musrfit msr Files — musrfit 1.7.4 documentation + msr2data - A Program for Automatically Processing Multiple musrfit msr Files — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        msr2data - A Program for Automatically Processing Multiple musrfit msr Files

        +
        +
        + +

        + «  mupp - μSR Parameter Plotter +   ::   + Contents +   ::   + any2many - a Universal μSR-file-format converter  » +

        -
        -
        -
        -
        - +
        +
        + +

        msr2data - A Program for Automatically Processing Multiple musrfit msr Files

        msr2data (originally written by B. M. Wojek) is a program implemented in C++. Its purpose is @@ -369,77 +366,22 @@ fit serves as template for the second and so on. The template field stays empty

        -
        -
        - - + diff --git a/doc/html/mupp.html b/doc/html/mupp.html index e687b20a..8c494031 100644 --- a/doc/html/mupp.html +++ b/doc/html/mupp.html @@ -6,15 +6,15 @@ - mupp - μSR Parameter Plotter — musrfit 1.7.4 documentation + mupp - μSR Parameter Plotter — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        mupp - μSR Parameter Plotter

        +
        +
        + +

        + «  musredit: the GUI Based Interface to musrfit +   ::   + Contents +   ::   + msr2data - A Program for Automatically Processing Multiple musrfit msr Files  » +

        -
        -
        -
        -
        - +
        +
        + +

        mupp - μSR Parameter Plotter

        mupp is a little helper program which allows to quickly plot a collection of msr-file parameters, @@ -266,70 +263,22 @@ SCRIPT COMMANDS:

        -
        -
        - - + diff --git a/doc/html/musr-root.html b/doc/html/musr-root.html index d49cc9c8..4be045b1 100644 --- a/doc/html/musr-root.html +++ b/doc/html/musr-root.html @@ -6,15 +6,15 @@ - MusrRoot - an Extensible Open File Format for μSR — musrfit 1.7.4 documentation + MusrRoot - an Extensible Open File Format for μSR — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        MusrRoot - an Extensible Open File Format for μSR

        +
        +
        + +

        + «  any2many - a Universal μSR-file-format converter +   ::   + Contents +   ::   + Acknowledgements  » +

        -
        -
        -
        -
        - +
        +
        + +

        MusrRoot - an Extensible Open File Format for μSR

        Until 2011 different μSR file formats were used within PSI. The bulk-μSR instruments were @@ -847,88 +844,22 @@ the entry has been added. The last token, -

        -
        - - + diff --git a/doc/html/musredit.html b/doc/html/musredit.html index 1e340739..d0c5f968 100644 --- a/doc/html/musredit.html +++ b/doc/html/musredit.html @@ -6,15 +6,15 @@ - musredit: the GUI Based Interface to musrfit — musrfit 1.7.4 documentation + musredit: the GUI Based Interface to musrfit — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        musredit: the GUI Based Interface to musrfit

        +
        +
        + +

        + «  Setting up musrfit / DKS: High Speed Fitting with GPU’s +   ::   + Contents +   ::   + mupp - μSR Parameter Plotter  » +

        -
        -
        -
        -
        - +
        +
        + +

        musredit: the GUI Based Interface to musrfit

        @@ -480,82 +477,22 @@ the corresponding fit parameter value, except the phases where the step will be
        -
        -
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        + +

        + Contents +

        -
        -
        -
        -
        - +
        +
        + +

        Search

        @@ -74,27 +73,18 @@
        -
        -
        -
        -
        -
        +
        + +

        + Contents +

        +
        -
        -
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nlocal_startup:13,panic:13,unhappi:13,unfriendli:13,pnl_pippardfitt:13,fpippardfitterglob:13,calculatefield:13,energyindex:13,calcualt:13,pol:13,dpol:13,getmuonstoppingdens:13,degree2rad:13,getmagneticfield:13,fab:13,filesystem:10,vaild:13},objects:{},objtypes:{},objnames:{},titleterms:{acknowledg:0,any2mani:[1,13],univers:1,"\u03bcsr":[1,6,13,7,12],file:[1,5,8,13,7,12,11],format:[1,13,7],convert:1,bugtrack:2,how:3,cite:3,musrfit:[10,5,3,9,8,13,4,11],welcom:4,document:[12,4],indic:4,tabl:4,msr2data:[13,11,5],program:5,automat:5,process:[11,5],multipl:[11,5],msr:[13,11,5],basic:[8,13,7,5],type:[13,5],usag:[8,6,13,5],run:[13,7,5],list:5,structur:5,option:[10,5],paramet:[8,6,5],global:[13,5],mode:5,gener:[13,5],extract:5,extend:5,known:5,limit:5,graphic:[6,9,5],user:[5,6,13,7,12],interfac:[8,6,7,5],provid:5,musredit:[10,8,5],mupp:6,plotter:6,defin:6,variabl:[10,6],dialog:6,script:6,summari:6,musrroot:7,extens:[13,7],open:7,some:7,concern:7,root:[10,7],inform:7,contain:7,runhead:7,runinfo:7,overview:[13,7],tmusrrunhead:7,concept:7,header:7,write:7,read:[11,7],valid:7,requir:[10,7],detectorinfo:7,sampleenvironmentinfo:7,magneticfieldenvironmentinfo:7,beamlineinfo:7,exhaust:7,tree:7,includ:7,everyth:[10,7],tmusrrunphysicalquant:7,possibl:7,represent:7,gui:8,base:8,introduct:[12,13,8],avail:[13,8],execut:[13,8],configur:[13,8],musrgui:[10,8],musredit_startup:8,xml:[12,13,8],featur:8,musrwiz:8,theori:[13,8],"function":[12,13,8],map:[13,8],fit:[9,11,8,13],info:8,creat:8,musrstep:8,set:[10,9],high:9,speed:9,gpu:[9,13],tesla:9,k40c:9,nvidia:9,driver:9,instal:[10,9],cuda:9,via:[10,9],cmake:[10,9],amd:9,card:9,radeon:9,"390x":9,app:9,softwar:[10,9],develop:9,kit:9,sdk:9,enabl:[9,13],opencl:[9,13],support:[10,9,13],maco:[10,9],differ:10,platform:10,oper:10,system:10,restrict:10,gnu:10,linux:10,nexu:10,build:10,last:10,step:10,depreci:10,check:10,window:10,cygwin:10,potenti:10,problem:10,mac:10,macport:10,packag:10,from:10,sourc:10,environ:10,note:10,catalina:10,fink:10,obsolet:10,tutori:11,singl:[13,11],histogram:[13,11],determin:11,data:[12,11],rang:11,musrt0:[13,11],model:[12,11],view:11,musrview:[13,11],further:11,asymmteri:11,lib:12,meissner:12,profil:12,vortex:12,lattic:12,relat:12,bmw:12,libfitpofb:12,dimension:12,london:12,state:12,isotrop:12,superconductor:12,bulk:12,field:12,distribut:12,mix:12,startup:12,nonloc:12,superconduct:12,screen:12,analyz:12,"\u03b2":12,nmr:[12,13],bnmr:12,libbnmr:12,liblineprofil:12,manual:13,kei:13,shortcut:13,musrft:13,msr2msr:13,dump_head:13,musrfit_startup:13,descript:13,titl:13,fitparamet:13,block:13,command:13,minuit2:13,detail:13,fourier:13,plot:13,statist:13,rrf:13,asymmetri:13,neg:13,muon:13,beta:13,non:13,without:13,object:13,access:13,rge:13,handler:13,low:13,energi:13,technic:13,framework:13,deprec:10},envversion:43}) \ No newline at end of file diff --git a/doc/html/setup-dks.html b/doc/html/setup-dks.html index 5983e85e..5735baf6 100644 --- a/doc/html/setup-dks.html +++ b/doc/html/setup-dks.html @@ -6,15 +6,15 @@ - Setting up musrfit / DKS: High Speed Fitting with GPU’s — musrfit 1.7.4 documentation + Setting up musrfit / DKS: High Speed Fitting with GPU’s — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        Setting up musrfit / DKS: High Speed Fitting with GPU’s

        +
        +
        + +

        + «  Setting up musrfit on Different Platforms +   ::   + Contents +   ::   + musredit: the GUI Based Interface to musrfit  » +

        -
        -
        -
        -
        - +
        +
        + +

        Setting up musrfit / DKS: High Speed Fitting with GPU’s

        In the years 2016/2017 we explored ways to speed up current fitting frameworks, especially musrfit. @@ -255,78 +252,22 @@ The only thing you need DKS -

        -
        - - + diff --git a/doc/html/setup-standard.html b/doc/html/setup-standard.html index 11b37291..e85712a8 100644 --- a/doc/html/setup-standard.html +++ b/doc/html/setup-standard.html @@ -6,15 +6,15 @@ - Setting up musrfit on Different Platforms — musrfit 1.7.4 documentation + Setting up musrfit on Different Platforms — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        Setting up musrfit on Different Platforms

        +
        +
        + +

        + «  Documentation of user libs (user functions) +   ::   + Contents +   ::   + Setting up musrfit / DKS: High Speed Fitting with GPU’s  » +

        -
        -
        -
        -
        - +
        +
        + +

        Setting up musrfit on Different Platforms

        @@ -1192,123 +1189,22 @@ $ musrview test-histo-ROOT-NPP.msr
        -
        -
        - - + diff --git a/doc/html/tutorial.html b/doc/html/tutorial.html index 859b9ca7..5a964abb 100644 --- a/doc/html/tutorial.html +++ b/doc/html/tutorial.html @@ -6,15 +6,15 @@ - Tutorial for musrfit — musrfit 1.7.4 documentation + Tutorial for musrfit — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        Tutorial for musrfit

        +
        +
        + +

        + «  How to Cite musrfit? +   ::   + Contents +   ::   + User manual  » +

        -
        -
        -
        -
        - +
        +
        + +

        Tutorial for musrfit

        @@ -381,74 +378,22 @@ For a complete description please refer to the manuals of -
        -

        Table Of Contents

        - +
        + +

        + «  How to Cite musrfit? +   ::   + Contents +   ::   + User manual  » +

        -

        Previous topic

        -

        How to Cite musrfit?

        -

        Next topic

        -

        User manual

        -

        This Page

        - - - -
        -
        -
        - + diff --git a/doc/html/user-libs.html b/doc/html/user-libs.html index 156ec74e..553fcc18 100644 --- a/doc/html/user-libs.html +++ b/doc/html/user-libs.html @@ -6,15 +6,15 @@ - Documentation of user libs (user functions) — musrfit 1.7.4 documentation + Documentation of user libs (user functions) — musrfit 1.7.6 documentation - + - + - +

        + musrfit 1.7.6 documentation

        +

        Documentation of user libs (user functions)

        +
        +
        + +

        + «  User manual +   ::   + Contents +   ::   + Setting up musrfit on Different Platforms  » +

        -
        -
        -
        -
        - +
        +
        + +

        Documentation of user libs (user functions)

        -
        -
        -
        -
        -

        Table Of Contents

        - +
        + +

        + «  User manual +   ::   + Contents +   ::   + Setting up musrfit on Different Platforms  » +

        -

        Previous topic

        -

        User manual

        -

        Next topic

        -

        Setting up musrfit on Different Platforms

        -

        This Page

        - - - -
        -
        -
        - + diff --git a/doc/html/user-manual.html b/doc/html/user-manual.html index 8640dfe3..3f6a6f7b 100644 --- a/doc/html/user-manual.html +++ b/doc/html/user-manual.html @@ -6,15 +6,15 @@ - User manual — musrfit 1.7.4 documentation + User manual — musrfit 1.7.6 documentation - + - + - + +
        + +

        + «  Tutorial for musrfit +   ::   + Contents +   ::   + Documentation of user libs (user functions)  » +

        -
        -
        -
        -
        - +
        +
        + +

        User manual

        @@ -65,23 +62,28 @@
        <msr-file>
        filename of the msr input file defining all the details needed for performing a fit to a specified set of data. This is the only mandatory parameter.
        -
        -k, - -keep-mn2-output
        +
        -k, –keep-mn2-output
        selects the option for keeping the output of MINUIT2 including the correlation coefficients between different parameters and renaming the files MINUIT2.OUTPUT and MINUIT2.root to <msr_file_without_extension>-mn2.output and <msr_file_without_extension>-mn2.root, respectively, e.g. <msr_file> = 8472.msr will result in 8472-mn2.output, 8472-mn2.root.
        -
        -c, - -chisq-only
        +
        -c, –chisq-only
        Instead of fitting the model, musrfit calculates \(\chi^2\) or max. log-likelihood, maxLH, only once and sends the result to the standard output if called with this option. This is e.g. useful for the adjustment of the initial values of the fit parameters.
        -
        -t, - -title-from-data-file
        +
        -t, –title-from-data-file
        If this option is given musrfit will replace the title in the <msr_file> by the run title in the data file of the first run appearing in a RUN block. In case there is no run title in the data file no substitution is done.
        -
        -e, - -estimateN0
        +
        -e, –estimateN0
        estimate \(N_0\) for single histogram fits.
        -
        -p, - -per-run-block-chisq
        +
        -p, –per-run-block-chisq
        will write per run block chisq/maxLH into the msr-file.
        -
        - -dump <type>
        +
        -n, –no-of-cores-avail
        +
        print out how many cores are available (only vaild for OpenMP)
        +
        -u, –use-no-of-threads <number>
        +
        <number>: number of threads to be used (OpenMP). Needs to be <= max. number of cores. +If OpenMP is enable, the maximal number of cores is used, if it is not limited by this option.
        +
        –dump <type>
        is writing a data file with the fit data and the theory; <type> can be ascii (data in columns) or root (data in ROOT histograms).
        -
        - -timeout <timeout_tag>
        +
        –timeout <timeout_tag>
        overwrites the predefined timeout of 3600 sec. <timeout_tag> \(\leq\) 0 means the timeout facility is not enabled. <timeout_tag> > 0, e.g. nn will set the timeout to nn (sec). If during a fit this timeout is reached, musrfit will terminate. This is used to prevent orphan musrfit processes to jam the system.
        -
        - -help
        +
        –help
        displays a small help notice in the shell explaining the basic usage of the program.
        -
        - -version
        +
        –version
        prints the version number of musrfit

        If called with a msr input file, e.g.

        @@ -101,22 +103,22 @@
        <msr_file>
        name of the msr input or output file to be displayed. This is the only mandatory parameter.
        -
        - -help
        +
        –help
        displays a small help notice in the shell explaining the basic usage of the program.
        -
        - -version
        +
        –version
        prints the version number of musrview.
        -
        -f, - -fourier
        +
        -f, –fourier
        will directly present the Fourier transform of the <msr_file> with Fourier options as defined in the <msr_file>.
        -
        -a, - -avg
        +
        -a, –avg
        will directly present the averaged data/Fourier of the <msr_file>.
        -
        -1, - -one_to_one
        +
        -1, –one_to_one
        calculate the theory points only at the data points.
        -
        - -<graphic_format_extension>
        +
        –<graphic_format_extension>
        will produce a graphics output file without starting a ROOT session. The filename is based on the name of the <msr_file>, e.g. 8472.msr will result in 8472_0.png. Supported values for <graphic_format_extension> are eps, pdf, gif, jpg, png, svg, xpm, and, root.
        -
        - -ascii
        +
        –ascii
        will generate an ascii dump of the data and theory as plotted.
        -
        - -timeout <timeout>
        +
        –timeout <timeout>
        <timeout> given in seconds after which musrview terminates. If <timeout> \(\leq\) 0, no timeout will take place. Default for <timeout> is 0.

        If called with a msr file and the --<graphic_format_extension> option, e.g.

        @@ -175,55 +177,55 @@ Supported values for <graphic_
        <msr_files>
        msr-file name(s). These msr-files are used for the Fourier transform. It can be a list of msr-files, e.g. musrFT 3110.msr 3111.msr
        -
        -df, - -data-file <data-file>
        +
        -df, –data-file <data-file>
        This allows to feed only μSR data file(s) to perform the Fourier transform. Since the extended <msr-file> information are missing, they will need to be provided by to options, or musrFT tries to guess, based on musrfit_startup.xml settings.
        Options
        -
        - -help
        +
        –help
        display a help and exit.
        -
        - -version
        +
        –version
        output version information and exit.
        -
        -g, - -graphic-format <graphic-format-extension>
        +
        -g, –graphic-format <graphic-format-extension>
        will produce a graphic-output-file without starting a root session. The name is based either on the <msr-file> or the <data-file>, e.g. 3310.msr -> 3310_0.png. Supported graphic-format-extension: eps, pdf, gif, jpg, png, svg, xpm, and root.
        -
        - -dump <fln>
        +
        –dump <fln>
        rather than starting a root session and showing Fourier graphs of the data, it will output the Fourier data in an ascii file <fln>.
        -
        -br, - -background-range <start> <end>
        +
        -br, –background-range <start> <end>
        background interval used to estimate the background to be subtracted before the Fourier transform. <start>, <end> to be given in bins.
        -
        -bg, - -background
        +
        -bg, –background
        gives the background explicit for each histogram.
        -
        -fo, - -fourier-option <fopt>
        +
        -fo, –fourier-option <fopt>
        <fopt> can be ‘real‘, ‘imag‘, ‘real+imag‘, ‘power‘, or ‘phase‘. If this is not defined (neither on the command line nor in the musrfit_startup.xml) ‘power‘ will be used.
        -
        -ap, - -apodization <val>
        +
        -ap, –apodization <val>
        <val> can be either ‘none‘, ‘weak‘, ‘medium‘, ‘strong‘. Default will be ‘none‘.
        -
        -fp, - -fourier-power <N>
        +
        -fp, –fourier-power <N>
        <N> being the Fourier power, i.e. 2^<N> used for zero padding. Default is -1, i.e. no zero padding will be performed.
        -
        -u, - -units <units>
        +
        -u, –units <units>
        <units> is used to define the abscissa of the Fourier transform. One may choose between the fields (Gauss) or (Tesla), the frequency (MHz), and the angular-frequency domain (Mc/s). Default will be ‘MHz‘.
        -
        -ph, - -phase <val>
        +
        -ph, –phase <val>
        defines the initial phase <val>. This only is of concern for ‘real‘, ‘imag‘, and ‘real+imag‘. Default will be 0.0.
        -
        -fr, - -fourier-range <start> <end>
        +
        -fr, –fourier-range <start> <end>
        Fourier range. <start>, <end> are interpreted in the units given. Default will be -1.0 for both which means, take the full Fourier range.
        -
        -tr, - -time-range <start> <end>
        +
        -tr, –time-range <start> <end>
        time domain range to be used for Fourier transform. <start>, <end> are to be given in (μs). If nothing is provided, the full time range found in the data file(s) will be used.
        -
        - -histo <list>
        +
        –histo <list>
        give the <list> of histograms to be used for the Fourier transform. E.g. musrFT -df lem15_his_01234.root --histo 1 3, will only be needed together with the option --data-file. If multiple data files are given, <list> will apply to all data-files given. If --histo is not given, all histos of a data file will be used. <list> can be anything like: 2 3 6, or 2-17, or 1-6 9, etc.
        -
        -a, - -average
        +
        -a, –average
        show the average of all ALL Fourier transformed data.
        -
        -ad, - -average-per-data-set
        +
        -ad, –average-per-data-set
        show the average of per-data-set Fourier transformed data.
        - -t0 <list>
        A list of t0’s can be provided. This in conjunction with --data-file and --fourier-option real allows to get the proper initial phase if t0’s are known. If a single t0 for multiple histos is given, it is assume, that this t0 is common to all histos. Example: musrFT -df lem15_his_01234.root -fo real --t0 2750 --histo 1 3.
        -
        -pa, - -packing <N>
        +
        -pa, –packing <N>
        if <N> (an integer), the time domain data will first be packed/rebinned by <N>.
        -
        - -title <title>
        +
        –title <title>
        give a global title for the plot.
        -
        - -create-msr-file <fln>
        +
        –create-msr-file <fln>
        creates a msr-file based on the command line options provided. This will help on the way to a full fitting model.
        -
        -lc, - -lifetimecorrection <fudge>
        +
        -lc, –lifetimecorrection <fudge>
        try to eliminate the muon life time decay. Only makes sense for low transverse fields. <fudge> is a tweaking factor (scaling factor for the estimated t0) and should be kept around 1.0.
        -
        - -timeout <timeout>
        +
        –timeout <timeout>
        <timeout> given in seconds after which musrFT terminates. If <timeout> \(\leq\) 0, no timeout will take place. Default <timeout> is 3600 sec.
        @@ -277,13 +279,13 @@ Supported values for <graphic_
        <msr_file>
        name of an msr file.
        -
        -g, - -getT0FromPromptPeak [<firstGoodBinOffset>]
        +
        -g, –getT0FromPromptPeak [<firstGoodBinOffset>]
        tries to estimate t0 from the prompt peak (maximum entry) in each histogram and writes the corresponding values to the t0 lines in the RUN blocks of the msr file. If an optional number <firstGoodBinOffset> is given, the lower limit of the data range will be set to t0 + <firstGoodBinOffset>.
        -
        - -timeout <timeout>
        +
        –timeout <timeout>
        <timeout> given in seconds after which musrview terminates. If <timeout> \(\leq\) 0, no timeout will take place. Default for <timeout> is 0.
        -
        - -help
        +
        –help
        displays a small help notice in the shell explaining the basic usage of the program.
        -
        - -version
        +
        –version
        prints the version number of musrt0.

        The interactive mode of musrt0 is started if the program is called with a sole msr-file argument, e.g.

        @@ -327,7 +329,7 @@ Supported values for <graphic_
        input WKM msr file (mandatory first parameter).
        <msr_file_out>
        converted output musrfit msr file (mandatory second parameter).
        -
        - -help
        +
        –help
        displays a small help notice in the shell explaining the basic usage of the program.

        A typical example then looks like:

        @@ -410,13 +412,13 @@ Supported values for <graphic_

        dump_header

        dump_header is a little program which tries to read a μSR data file and sends the relevant information (required header info, start of the histos, etc.) to the standard output. Currently the following μSR data file formats are supported: MusrROOT, ROOT (old LEM format), PSI-BIN, PSI-MDU, NeXus (IDF1 and IDF2), MUD, and WKM.

        -
        -rn, - -runNo <runNo>
        +
        -rn, –runNo <runNo>
        run number of the header to be dumped.
        -
        -fn, - -fileName <fileName>
        +
        -fn, –fileName <fileName>
        muSR data file name.
        -
        -ff, - -fileFormat <fileFormat>
        +
        -ff, –fileFormat <fileFormat>
        where <fileFormat> is one of the above listed ones.
        -
        -y, - -year <year>
        +
        -y, –year <year>
        <year> has to be a 4 digit value, e.g. 2005, if provided it is used to generate the file name for the given <runNo>, otherwise the current year is used. If a file name is given, this option has no effect.
        -s, –summary
        this option is used for LE-μSR data sets only. It will, additionally to the header information, print the summary file content.
        @@ -2601,107 +2603,22 @@ here:

        -
        -
        - - +