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updated docu. replaced MusrRoot example. some minor change in photo_meissner

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suter_a 2012-09-03 07:56:56 +00:00
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doc/examples/test-histo-MusrRoot.msr
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03000 - test LSCO x=0.02 (224-227), T=12.00 (K), E=5.57 keV, WEW B=~49(G)/8.62(A), Tr=15.02 (kV), Sample=8.70 (kV), SpinRot -10
############################################################### ###############################################################
FITPARAMETER FITPARAMETER
# No Name Value Step Pos_Error Boundaries # No Name Value Step Pos_Error Boundaries
1 asym1 0.1137 -0.0016 0.0016 0 0.3 1 AsymT 0.0506 -0.0010 0.0010 0 0.33
2 field1 150.04 -0.10 0.10 0 300 2 Field 48.29 -0.13 0.13
3 rate1 0.1845 -0.0088 0.0089 0 none 3 RateT 0.128 -0.015 0.014 0 none
4 asym2 0.04571 -0.00099 0.00099 0 0.3 4 AsymL 0 0 none 0 0.33
5 field2 399.80 -0.13 0.13 0 none 5 RateL 0 0 none
6 rate2 0.170 -0.018 0.017 0 none 6 AlphaLR 0.9785 -0.0019 0.0019
7 phase_L 26.96 -0.90 0.89 -360 360 7 PhaseL 6.5 -2.2 2.3 -40 40
8 Norm_L 1024.12 -0.98 0.98 8 BkgL 6.824 -0.068 0.067
9 BG_L 102.25 -0.17 0.17 9 RelPhaseR 178.7 -2.7 2.7 150 210
10 phase_R 208.14 -0.90 0.90 -360 360 10 NormR 419.43 -0.57 0.56
11 Norm_R 1022.3 -1.0 1.0 11 BkgR 8.303 -0.071 0.071
12 BG_R 144.09 -0.20 0.20 12 AlphaTB 1.1026 -0.0021 0.0021
13 RelPhaseT 269.1 -2.7 2.7 240 300
14 BkgT 7.363 -0.070 0.070
15 NormB 393.04 -0.55 0.55
16 RelPhaseB 90.8 -2.8 2.8 60 120
17 BkgB 6.995 -0.067 0.067
18 One 1 0 none
19 Zero 0 0 none
############################################################### ###############################################################
THEORY THEORY
asymmetry 1 asymmetry 1
simplExpo 3 (rate) simpleGss 3 (rate)
TFieldCos map1 fun1 (phase frequency) TFieldCos fun1 fun2 (phase frequency)
+ +
asymmetry 4 asymmetry fun4
simpleGss 6 (rate) simplExpo 5 (rate)
TFieldCos map1 fun2 (phase frequency)
############################################################### ###############################################################
FUNCTIONS FUNCTIONS
fun1 = par2 * gamma_mu fun1 = par7 + map1
fun2 = par5 * gamma_mu fun2 = par2 * gamma_mu
fun3 = map2 * map3
fun4 = par4 * cos(pi / 180.0 * (par7 + map1))
############################################################### ###############################################################
RUN data/03000 MUE4 PSI MUSR-ROOT (name beamline institute data-file-format) RUN data/lem12_his_2466 MUE4 PSI MUSR-ROOT (name beamline institute data-file-format)
fittype 0 (single histogram fit) fittype 0 (single histogram fit)
norm 8 norm fun3
backgr.fit 9 backgr.fit 8
lifetimecorrection lifetimecorrection
map 7 0 0 0 0 0 0 0 0 0 map 19 6 10 0 0 0 0 0 0 0
forward 1 2 forward 1 5
data 3479 66000 data 2741 63000
t0 3419.0 3520.0 t0 2741.0 2741.0
fit 0.1 10 fit 0.2 10
packing 50 packing 50
RUN data/03000 MUE4 PSI MUSR-ROOT (name beamline institute data-file-format) RUN data/lem12_his_2466 MUE4 PSI MUSR-ROOT (name beamline institute data-file-format)
fittype 0 (single histogram fit) fittype 0 (single histogram fit)
norm 11 norm fun3
backgr.fit 12 backgr.fit 11
lifetimecorrection lifetimecorrection
map 10 0 0 0 0 0 0 0 0 0 map 9 18 10 0 0 0 0 0 0 0
forward 5 6 forward 3 7
data 3609 66000 data 2741 63000
t0 3517.0 3418.0 t0 2741.0 2741.0
fit 0.1 10 fit 0.2 10
packing 50
RUN data/lem12_his_2466 MUE4 PSI MUSR-ROOT (name beamline institute data-file-format)
fittype 0 (single histogram fit)
norm fun3
backgr.fit 14
lifetimecorrection
map 13 12 15 0 0 0 0 0 0 0
forward 2 6
data 2741 63000
t0 2741.0 2741.0
fit 0.2 10
packing 50
RUN data/lem12_his_2466 MUE4 PSI MUSR-ROOT (name beamline institute data-file-format)
fittype 0 (single histogram fit)
norm fun3
backgr.fit 17
lifetimecorrection
map 16 18 15 0 0 0 0 0 0 0
forward 4 8
data 2741 63000
t0 2741.0 2741.0
fit 0.2 10
packing 50 packing 50
############################################################### ###############################################################
COMMANDS COMMANDS
MINIMIZE MINIMIZE
#HESSE
MINOS MINOS
SAVE SAVE
@ -65,17 +98,16 @@ SAVE
FOURIER FOURIER
units Gauss # units either 'Gauss', 'MHz', or 'Mc/s' units Gauss # units either 'Gauss', 'MHz', or 'Mc/s'
fourier_power 11 fourier_power 11
apodization STRONG # NONE, WEAK, MEDIUM, STRONG apodization MEDIUM # NONE, WEAK, MEDIUM, STRONG
plot POWER # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE plot POWER # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
phase par7 range 0 100
range 0 1000
############################################################### ###############################################################
PLOT 0 (single histo plot) PLOT 0 (single histo plot)
runs 1 runs 1 3
range 0 10 -0.3 0.3 range 0 9 -0.15 0.15
view_packing 100 view_packing 500
############################################################### ###############################################################
STATISTIC --- 2012-03-22 09:15:43 STATISTIC --- 2012-06-03 14:14:15
chisq = 2418.0, NDF = 2016, chisq/NDF = 1.199415 chisq = 3981.9, NDF = 4001, chisq/NDF = 0.995215

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<h1><a name="BMWlibs_for_61musrfit_61"></a> BMWlibs for <code>musrfit</code> </h1> <ul> <h1><a name="BMWlibs_for_61musrfit_61"></a> BMWlibs for <code>musrfit</code> </h1> <ul>
<li> <a href="LibFitPofB.html"> <code>libFitPofB</code>: routines for calculating transverse-field muon-spin depolarization functions from various static field distributions in superconductors</a> <li> <a href="LibFitPofB.html"> <code>libFitPofB</code>: routines for calculating transverse-field muon-spin depolarization functions from various static field distributions in superconductors</a>
</li> <li> <a href="LibZFRelaxation.html"> <code>libZFRelaxation</code>: routines for calculating zero-field muon-spin depolarization functions from various static field distributions</a> </li> <li> <a href="LibZFRelaxation.html"> <code>libZFRelaxation</code>: routines for calculating zero-field muon-spin depolarization functions from various static field distributions</a>
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-- <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> &amp; <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a></div><!-- /foswikiTopic--> -- <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> &amp; <a href="http://lmu.web.psi.ch/lem/group.html" target="_top">AS</a> </div>
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<h1><a name="libFitPofB"></a> libFitPofB </h1> <h1><a name="libFitPofB"></a> libFitPofB </h1>
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136
doc/html/user/MUSR/LibZFRelaxation.html
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@ -1,31 +1,19 @@
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@ -107,21 +95,28 @@ pre {
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<h1><a name="libZFRelaxation"></a> libZFRelaxation </h1> <h1><a name="libZFRelaxation"></a> libZFRelaxation </h1>
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@ -209,30 +204,81 @@ The parameters are: <ol>
</li> <li> &Theta; (&deg;). </li> <li> &Theta; (&deg;).
</li></ol> </li></ol>
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<h1><a name="A_61_61msr2data_61_61"></a> <code><b>msr2data</b></code> </h1> <h1><a name="A_61_61msr2data_61_61"></a> <code><b>msr2data</b></code> </h1>
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@ -343,56 +338,93 @@ msr2data 8471 8470 -OneRunFit&#95;example -o OneRunFits.db
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<td align="right" class="foswikiTableCol3 foswikiLast"> 37.0&nbsp;K </td>
<td class="foswikiTableCol4 foswikiLast"> <span class="foswikiNoBreak">20 Jul 2011 - 12:13</span> </td>
<td class="foswikiTableCol5 foswikiLast"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6 foswikiLast"> graphical interface to msr2data </td>
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<h1><a name="A_61_61musrfit_61_61_User_Manual"></a> <code><b>musrfit</b></code> User Manual </h1> <h1><a name="A_61_61musrfit_61_61_User_Manual"></a> <code><b>musrfit</b></code> User Manual </h1>
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@ -182,7 +177,7 @@ If called from within a shell it accepts several parameters: <dl>
</dd> <dt> -c, --chisq-only </dt><dd> Instead of fitting the model, <code>musrfit</code> calculates &#967;<sup>2</sup> only once and sends the result to the standard output if called with this option. This might be useful for the adjustment of the initial values of the fit parameters. </dd> <dt> -c, --chisq-only </dt><dd> Instead of fitting the model, <code>musrfit</code> calculates &#967;<sup>2</sup> only once and sends the result to the standard output if called with this option. This might be useful for the adjustment of the initial values of the fit parameters.
</dd> <dt> -t, --title-from-data-file </dt><dd> If this option is given <code>musrfit</code> will replace the title in the <strong>&lt;msr_file&gt;</strong> by the run title in the data file of the first run appearing in a RUN block. In case there is no run title in the data file no substitution is done. </dd> <dt> -t, --title-from-data-file </dt><dd> If this option is given <code>musrfit</code> will replace the title in the <strong>&lt;msr_file&gt;</strong> by the run title in the data file of the first run appearing in a RUN block. In case there is no run title in the data file no substitution is done.
</dd> <dt> --dump &lt;type&gt; </dt><dd> is writing a data file with the fit data and the theory; <strong>&lt;type&gt;</strong> can be <strong>ascii</strong> (data in columns) or <strong>root</strong> (data in <code>ROOT</code> histograms) </dd> <dt> --dump &lt;type&gt; </dt><dd> is writing a data file with the fit data and the theory; <strong>&lt;type&gt;</strong> can be <strong>ascii</strong> (data in columns) or <strong>root</strong> (data in <code>ROOT</code> histograms)
</dd> <dt> --timeout &lt;timeout_tag&gt; </dt><dd> overwrites the predefined timeout tag 'none'. &lt;timeout_tag&gt;='none' means the timeout facility is not enabled. &lt;timeout_tag&gt; = <code>nn</code> will set the timeout to <code>nn</code> (sec). If during a fit this timeout is reached, <code>musrfit</code> will terminate. This is used to prevent orphan musrfit process to jam the system. </dd> <dt> --timeout &lt;timeout_tag&gt; </dt><dd> overwrites the predefined timeout of 3600 sec. &lt;timeout_tag&gt;&lt;=0 means the timeout facility is not enabled. &lt;timeout_tag&gt; &gt; 0, e.g. <code>nn</code> will set the timeout to <code>nn</code> (sec). If during a fit this timeout is reached, <code>musrfit</code> will terminate. This is used to prevent orphan musrfit process to jam the system.
</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program </dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
</dd> <dt> --version </dt><dd> prints the version number of <code>musrfit</code> </dd> <dt> --version </dt><dd> prints the version number of <code>musrfit</code>
</dd></dl> </dd></dl>
@ -1044,6 +1039,17 @@ The PLOT block is intended to collect all the information needed for the graphic
If no plot range is given at all, the fit range of the first run also serves as time window for the plot. In the case no information on the axis of ordinates is available, the plotting range is chosen so that all data can be presented. If no plot range is given at all, the fit range of the first run also serves as time window for the plot. In the case no information on the axis of ordinates is available, the plotting range is chosen so that all data can be presented.
<p></p> <p></p>
It is possible to define multiple PLOT blocks. Each PLOT block generates its own <code>ROOT</code> canvas. It is possible to define multiple PLOT blocks. Each PLOT block generates its own <code>ROOT</code> canvas.
<p></p>
A few comments concerning the rotating reference frame (rrf) plot option: the idea of the rrf is to transform a high frequency &mu;SR spectrum into a low frequency spectrum. This is essentially done by multiplying the original asymmetry <img alt="A(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_125ae4b9a7d16163023ce9cb3043aa0a.png" /> by <img alt="\cos(\omega&#95;{\rm rrf} t + \phi&#95;{\rm rrf})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_edb200aa0d625d2d5cebb519d8d1f838.png" />. This leads to two frequency shifted copies of the original <img alt="A(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_125ae4b9a7d16163023ce9cb3043aa0a.png" />, one shifted downwards in frequency by <img alt="\omega&#95;{\rm rrf}" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_89458ff127e694cf28c0cdc314de62d1.png" /> (to wanted one) and one upwards (unwanted one). In order to get rid of the upward shifted spectrum, the <code>rrf_packing</code> is used, we just over-bin the high frequency copy (for now. In the future this will be dealt with FIR filtering)! The theory, however, is filtered via Kaiser filter. Here a short example:
<p></p>
<pre>
###############################################################
PLOT 0 (single histo plot)
runs 1
range 0 10 -0.3 0.3
rrf&#95;freq 13900 G
rrf&#95;packing 75
</pre>
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<a name="TheStatisticBlock"></a> <a name="TheStatisticBlock"></a>
<h2><a name="A_4.9_The_STATISTIC_Block"></a> 4.9 The STATISTIC Block </h2> <h2><a name="A_4.9_The_STATISTIC_Block"></a> 4.9 The STATISTIC Block </h2>
@ -1410,76 +1416,93 @@ A technical description of the musrfit framework can be found <a href="http://lm
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<div class="patternContent"><div class="foswikiTopic"><h1><a name="Acknowledgements_45_61_61musrfit_61_61"></a> Acknowledgements - <code><b>musrfit</b></code> </h1>
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<dt> Bastian M. Wojek </dt><dd> I am very much indebted to <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> for his rigorous testing of <code><a href="MusrFit.html">musrfit</a></code>, his many useful suggestions, contributions, and for the largest part of the <a href="WebHome.html" class="foswikiCurrentWebHomeLink">user manual of <code>musrfit</code></a> which makes it accessible to a broader audience! Many thanks Bastian! <dt> Bastian M. Wojek </dt><dd> I am very much indebted to <a href="http://www.fsf.org/register_form?referrer=8369" target="_top">BMW</a> for his rigorous testing of <code><a href="MusrFit.html">musrfit</a></code>, his many useful suggestions, contributions, and for the largest part of the <a href="WebHome.html" class="foswikiCurrentWebHomeLink">user manual of <code>musrfit</code></a> which makes it accessible to a broader audience! Many thanks Bastian!
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<div class="patternContent"><div class="foswikiTopic"><h1><a name="Setting_up_61_61musrfit_61_61_on_Different_Platforms"></a> Setting up <code><b>musrfit</b></code> on Different Platforms </h1>
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</div><div class="patternContent"><div class="foswikiTopic"><h1><a name="Setting_up_61_61musrfit_61_61_on_Different_Platforms"></a> Setting up <code><b>musrfit</b></code> on Different Platforms </h1>
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<a name="foswikiTOC"></a><div class="foswikiToc"> <ul> <a name="foswikiTOC"></a><div class="foswikiToc"> <ul>
<li> <a href="MusrFitSetup.html#Setting_up_61_61musrfit_61_61_on_Different_Platforms"> Setting up musrfit on Different Platforms </a> <li> <a href="MusrFitSetup.html#Setting_up_61_61musrfit_61_61_on_Different_Platforms"> Setting up musrfit on Different Platforms </a>
@ -339,7 +334,7 @@ musrview test-histo-ROOT-NPP.msr
<p></p> <p></p>
Notes Notes
<p></p> <p></p>
<a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim3 --></span> <a name="FootNote1note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote1text" class="foswikiCurrentWebHomeLink"> <strong>1</strong> </a></span>: <span class="FootNote">In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user has easy write access to this directory: <!-- verbatim2252 --></span>
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<a name="FootNote2note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote2text" class="foswikiCurrentWebHomeLink"> <strong>2</strong> </a></span>: <span class="FootNote"> When using <code>GCC</code> &#8805; 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> &#8805; 4.2 <code>musrfit</code> itself will parallelize the &chi;<sup>2</sup> calculation.</span> <a name="FootNote2note"></a><span class="FootNoteLabel"><a href="MusrFitSetup.html#FootNote2text" class="foswikiCurrentWebHomeLink"> <strong>2</strong> </a></span>: <span class="FootNote"> When using <code>GCC</code> &#8805; 4.2 please make sure that the environment variables <strong>USE_PARALLEL_MINUIT2</strong> and <strong>USE_OPENMP</strong> are <em>not</em> set! Otherwise <code>MINUIT2</code> will be compiled with parallelization support and cannot be used together with <code>musrfit</code> afterwards since the <code>musrfit</code> code is <em>not</em> fully thread-safe! When compiled with <code>GCC</code> &#8805; 4.2 <code>musrfit</code> itself will parallelize the &chi;<sup>2</sup> calculation.</span>
<p></p> <p></p>
@ -529,7 +524,7 @@ With Mac OS X the situation is up to some extent similar like on MS Windows but
<h2><a name="A_5.1_Requirements_40_61_61MacPorts_61_61_41"></a> 5.1 Requirements (<code><b>MacPorts</b></code>) </h2> <h2><a name="A_5.1_Requirements_40_61_61MacPorts_61_61_41"></a> 5.1 Requirements (<code><b>MacPorts</b></code>) </h2>
<h3><a name="A_5.1.1_Everything_but_61_61ROOT_61_61_and_61_61NeXus_61_61"></a> 5.1.1 Everything but <code><b>ROOT</b></code> and <code><b>NeXus</b></code> </h3> <h3><a name="A_5.1.1_Everything_but_61_61ROOT_61_61_and_61_61NeXus_61_61"></a> 5.1.1 Everything but <code><b>ROOT</b></code> and <code><b>NeXus</b></code> </h3>
Before proceeding with the usage of the <code><a href="http://www.macports.org/" target="_top">MacPorts</a></code> system first a few useful tools provided by Apple together with OS X (on the installation DVD/CDs) should be installed: <dl> Before proceeding with the usage of the <code><a href="http://www.macports.org/" target="_top">MacPorts</a></code> system first a few useful tools provided by Apple together with OS X (on the installation DVD/CDs) should be installed: <dl>
<dt> <a href="http://developer.apple.com/technology/tools.html" target="_top">Xcode tools</a> </dt><dd> Useful developer tools including for instance the GNU compiler collection <dt> <a href="http://developer.apple.com/technology/tools.html" target="_top">Xcode tools</a> </dt><dd> Useful developer tools including for instance the GNU compiler collection. Starting from XCode &gt;= 4.3 the command line tools need to be installed manually.
</dd> <dt> X11 </dt><dd> The X-window system (automatically installed on 10.5 Leopard and 10.6 Snow Leopard) </dd> <dt> X11 </dt><dd> The X-window system (automatically installed on 10.5 Leopard and 10.6 Snow Leopard)
</dd></dl> </dd></dl>
<p></p> <p></p>
@ -586,9 +581,12 @@ For installing the <code>ROOT</code> system there are two <strong>independent</s
<li> Visit the <code>ROOT</code> <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the packed precompiled binary version matching the OS X version. Then unpack the bundle to its final destination (e.g. /opt/root-system). <li> Visit the <code>ROOT</code> <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the packed precompiled binary version matching the OS X version. Then unpack the bundle to its final destination (e.g. /opt/root-system).
</li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system). In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user ("username" in the example) has easy write access to this directory: <pre class="bash">sudo chown -R username:staff /opt/root-system/ </pre> Finally, <code>ROOT</code> can be configured (here using the minimal set of options) and compiled as stated right below: <pre class="bash"> </li> <li> If there is no precompiled binary version of <code>ROOT</code> available for your system or e.g. <code>ROOT</code> should be compiled with another version of <code>GCC</code> visit the <a href="http://root.cern.ch/drupal/content/downloading-root" target="_top">web page</a> and download the 'complete source tree for all systems'. Then unpack this source tree to its destination (e.g. /opt/root-system). In case only a single user is working at the machine it might be considerable to change the ownership of the <code>ROOT</code> folder so that the user ("username" in the example) has easy write access to this directory: <pre class="bash">sudo chown -R username:staff /opt/root-system/ </pre> Finally, <code>ROOT</code> can be configured (here using the minimal set of options) and compiled as stated right below: <pre class="bash">
cd /opt/root-system cd /opt/root-system
./configure --gminimal --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml ./configure --gminimal --enable-fink --enable-asimage --enable-mathmore --enable-minuit2 --enable-xml
make make
</pre> </pre>
</li> <li> In case you are just migrating to the latest Mac OS X version (<em>e.g.</em> from 10.7 to 10.8.1) often for a period of a few weeks it is necessary to work with the SVN trunk version of <code>ROOT</code>, <em>i.e.</em> that you have to checkout <code>ROOT</code> via <code>svn</code>: <pre class="bash">
svn co https://root.cern.ch/svn/root/trunk root
</pre> For details see <a href="http://root.cern.ch/drupal/content/subversion-howto#How_do_I_check_out_the_ROOT_Subv" target="_top">ROOT: How to's</a>.
</li></ul> </li></ul>
<p></p> <p></p>
In order to finalize the <code>ROOT</code> installation and to prepare already the installation of <code>musrfit</code> and <code>musrgui</code> / <code>musredit</code> this is a good time for setting necessary environment variables for the use in Mac OS X. Put the following lines (without the comments in parentheses and with the paths adjusted to your local installation) into the file <strong>~/.MacOSX/environment.plist</strong> and <span class='foswikiRedFG'>re-login</span>:<br> In order to finalize the <code>ROOT</code> installation and to prepare already the installation of <code>musrfit</code> and <code>musrgui</code> / <code>musredit</code> this is a good time for setting necessary environment variables for the use in Mac OS X. Put the following lines (without the comments in parentheses and with the paths adjusted to your local installation) into the file <strong>~/.MacOSX/environment.plist</strong> and <span class='foswikiRedFG'>re-login</span>:<br>
@ -802,30 +800,81 @@ cd doc/examples
musrview test-histo-ROOT-NPP.msr musrview test-histo-ROOT-NPP.msr
</pre> </pre>
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<h1><a name="A_61_61musrgui_47_musredit_61_61"></a> <code><b>musrgui / musredit</b></code> </h1> <h1><a name="A_61_61musrgui_47_musredit_61_61"></a> <code><b>musrgui / musredit</b></code> </h1>
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@ -318,166 +313,93 @@ Besides the functions described above and which are mostly interfacing <code>mus
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For reporting bugs or requesting new features and improvements please use the <a href="https://tracker.intranet.psi.ch/jira/browse/MUSR" target="_top">PSI Tracker</a> or send an e-mail to A. Suter. For reporting bugs or requesting new features and improvements please use the <a href="https://tracker.intranet.psi.ch/jira/browse/MUSR" target="_top">PSI Tracker</a> or send an e-mail to A. Suter.
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<th class="foswikiTableCol0 foswikiFirstCol"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=0;table=1;up=0#sorted_table" title="Sort by this column">I</a> </th>
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<th class="foswikiTableCol4"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=4;table=1;up=0#sorted_table" title="Sort by this column">Date</a> </th>
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<th class="foswikiTableCol6"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=6;table=1;up=0#sorted_table" title="Sort by this column">Comment</a> </th>
<th class="foswikiTableCol7 foswikiLastCol"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/MusrGui?cover=print;sortcol=7;table=1;up=0#sorted_table" title="Sort by this column">Attribute</a> </th>
</tr>
</thead>
<tbody>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="LaTeX_logo.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/LaTeX_logo.png">LaTeX_logo.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=LaTeX_logo.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.8&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">11 Apr 2009 - 10:11</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrasym.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrasym.png">musrasym.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrasym.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 11:47</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrcalcchisq.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrcalcchisq.png">musrcalcchisq.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrcalcchisq.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 12:43</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrdump.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrdump.png">musrdump.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrdump.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">25 May 2012 - 15:52</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
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</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrfit.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrfit.png">musrfit.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrfit.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 12:45</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrgui-editor-v0.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrgui-editor-v0.png">musrgui-editor-v0.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrgui-editor-v0.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 37.5&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 14:53</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> musrgui options available upon right clicking a open msr-file </td>
<td class="foswikiTableCol7 foswikiLastCol"> &nbsp; </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrmsr2data.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrmsr2data.png">musrmsr2data.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrmsr2data.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 12:46</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrprefs.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrprefs.png">musrprefs.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrprefs.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 12:48</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrsinglehisto.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrsinglehisto.png">musrsinglehisto.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrsinglehisto.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 12:34</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrswap.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrswap.png">musrswap.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrswap.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 12:46</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrt0.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrGui/musrt0.png">musrt0.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrt0.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Apr 2009 - 12:47</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
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<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol foswikiLast"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrview.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1 foswikiLast"> <a href="../pub/MUSR/MusrGui/musrview.png">musrview.png</a> </td>
<td class="foswikiTableCol2 foswikiLast"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrGui?filename=musrview.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3 foswikiLast"> 0.3&nbsp;K </td>
<td class="foswikiTableCol4 foswikiLast"> <span class="foswikiNoBreak">10 Apr 2009 - 12:47</span> </td>
<td class="foswikiTableCol5 foswikiLast"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6 foswikiLast"> &nbsp; </td>
<td align="right" class="foswikiTableCol7 foswikiLastCol foswikiLast"> h </td>
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136
doc/html/user/MUSR/QuickStart.html
View File

@ -1,31 +1,19 @@
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<link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" /> <link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" />
<title> MUSR :: QuickStart</title> <title> MUSR :: QuickStart</title>
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<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> <meta name="robots" content="noindex" /> <link rel="alternate" type="application/rss+xml" title="RSS Feed" href="WebRsshtml.html" /> <link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
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@ -264,30 +259,81 @@ RUN 2008/lem08&#95;his&#95;8472 MUE4 PSI ROOT-NPP (name beamline institute dat
</pre> In the above example <code>musrfit</code> reads the data from the file <code><b>superconductor-data.db</b></code>; the <i>x</i> and <i>y</i> data are specified by the <strong>DB</strong> parameter names <code><b>range</b></code> and <code><b>field</b></code>. An alternative specification of the <i>x</i> and <i>y</i> data by the parameter number in the <strong>DB</strong> file is also possible! </pre> In the above example <code>musrfit</code> reads the data from the file <code><b>superconductor-data.db</b></code>; the <i>x</i> and <i>y</i> data are specified by the <strong>DB</strong> parameter names <code><b>range</b></code> and <code><b>field</b></code>. An alternative specification of the <i>x</i> and <i>y</i> data by the parameter number in the <strong>DB</strong> file is also possible!
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The &mu;SR-data-analysis process using <code>musrfit</code> is based on so-called <code>msr</code> files. These files contain all information needed for the analysis such as names of the data files, a theory function, fit and plot parameters, and so on. It is the idea of this page to explain the basic use of an <code>msr</code> file and the different programs of the <code>musrfit</code> suite using the example of a single-histogram fit to time-differential transverse-field &mu;SR data. For a complete description of all options please refer to the <a href="MusrFit.html">manual</a>. The &mu;SR-data-analysis process using <code>musrfit</code> is based on so-called <code>msr</code> files. These files contain all information needed for the analysis such as names of the data files, a theory function, fit and plot parameters, and so on. It is the idea of this page to explain the basic use of an <code>msr</code> file and the different programs of the <code>musrfit</code> suite using the example of a single-histogram fit to time-differential transverse-field &mu;SR data. For a complete description of all options please refer to the <a href="MusrFit.html">manual</a>.
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@ -275,106 +270,93 @@ This page only summarizes the very basic features and options of the programs co
</li> <li> <code><a href="Msr2Data.html">msr2data</a></code>. </li> <li> <code><a href="Msr2Data.html">msr2data</a></code>.
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<span class="patternActionButtons"><span><a href='https://intranet.psi.ch/wiki/bin/edit/MUSR/TutorialSingleHisto?t=1346657490' rel='nofollow' title='Edit this topic text' accesskey='e'><span class='foswikiAccessKey'>E</span>dit</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span class="foswikiRequiresChangePermission"><a href='https://intranet.psi.ch/wiki/bin/attach/MUSR/TutorialSingleHisto' rel='nofollow' title='Attach an image or document to this topic' accesskey='a'><span class='foswikiAccessKey'>A</span>ttach</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span><a href='TutorialSingleHistoc99a.html?cover=print;cover=print' rel='nofollow' title='Printable version of this topic' accesskey='p'><span class='foswikiAccessKey'>P</span>rint version</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span><a href='https://intranet.psi.ch/print/pdf.php?url=MUSR/TutorialSingleHisto?cover=print' title='PDF version of this topic'>PDF</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span><span class="foswikiRequiresChangePermission"><a href='https://intranet.psi.ch/wiki/bin/oops/MUSR/TutorialSingleHisto?template=oopshistory' rel='nofollow' title='View total topic history' accesskey='h'><span class='foswikiAccessKey'>H</span>istory</a></span>: r9&nbsp;<a rel="nofollow" href="https://intranet.psi.ch/wiki/bin/compare/MUSR/TutorialSingleHisto?rev1=8;rev2=9">&lt;</a>&nbsp;<a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?rev=8">r8</a>&nbsp;<a rel="nofollow" href="https://intranet.psi.ch/wiki/bin/compare/MUSR/TutorialSingleHisto?rev1=7;rev2=8">&lt;</a>&nbsp;<a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?rev=7">r7</a>&nbsp;<a rel="nofollow" href="https://intranet.psi.ch/wiki/bin/compare/MUSR/TutorialSingleHisto?rev1=6;rev2=7">&lt;</a>&nbsp;<a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?rev=6">r6</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span><a href='https://intranet.psi.ch/MUSR/TutorialSingleHisto?template=backlinksweb' rel='nofollow' title='Search the MUSR Web for topics that link to here' accesskey='b'><span class='foswikiAccessKey'>B</span>acklinks</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span><a href='https://intranet.psi.ch/MUSR/TutorialSingleHisto?raw=on' rel='nofollow' title='View without formatting' accesskey='v'><span class='foswikiAccessKey'>V</span>iew wiki text</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span><a href='https://intranet.psi.ch/MUSR/TutorialSingleHisto?refresh=on' title='Refresh images and LaTeX charts'>Refresh</a></span><span class='foswikiSeparator'>&nbsp;|&nbsp;</span><span><a href='https://intranet.psi.ch/MUSR/TutorialSingleHisto?template=more&amp;maxrev=9&amp;currrev=9' rel='nofollow' title='Delete or rename this topic; set parent topic; view and compare revisions' accesskey='m'><span class='foswikiAccessKey'>M</span>ore topic actions</a></span></span>
</div>
</div></div><div class="patternInfo"><span class="patternRevInfo">Topic revision: 02 Sep 2011, wojek</span></div>
</div>
</div><div id="patternSideBar"><div id="patternClearHeaderLeft"></div>
<div id="patternSideBarContents">
<div class="patternLeftBarPersonal">
<ul><li class="patternLogIn"><a href="https://intranet.psi.ch/wiki/bin/logon/MUSR/TutorialSingleHisto">Log In</a> or <a href="https://intranet.psi.ch/System/UserRegistration">Register</a></li></ul>
</div>
<p></p>
<p></p>
<b>PSI Webs</b> <ul>
<li> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/psi.png" width="16" height="16" alt="psi" /></span> <a href="https://intranet.psi.ch/Main/WebHome">WebHome</a>
</li> <li> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/psi.png" width="16" height="16" alt="psi" /></span> <a href="https://intranet.psi.ch/Main/WebList">weitere Webs</a>
</li></ul>
<hr />
<b>System Webs</b> <ul>
<li> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/foswiki.png" width="16" height="16" alt="foswiki" /></span> <a href="https://intranet.psi.ch/Sandbox/WebHome">WebHome</a>
</li> <li> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/foswiki.png" width="16" height="16" alt="foswiki" /></span> <a href="https://intranet.psi.ch/System/WebHome">Documentation</a>
</li></ul>
<hr /> <ul>
<li> <a href="https://intranet.psi.ch/MUSR/WebCreateNewTopic?parent=TutorialSingleHisto" target="_top"><span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/newtopic.png" width="16" height="16" alt="newtopic" /></span> Create New Topic</a>
</li> <li> <a href="WebTopicList.html"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/index.png" width="16" height="16" alt="index" /></span> Show All Topics</a>
</li> <li> <a href="WebSearch.html"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/searchtopic.png" width="16" height="16" alt="searchtopic" /></span> Search in Topics</a>
</li> <li> <a href="WebChanges.html"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/changes.png" width="16" height="16" alt="changes" /></span> Recent Changes</a>
</li> <li> <a href="WebNotify.html"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/notify.png" width="16" height="16" alt="notify" /></span> Define Notifications</a>
</li></ul>
<p></p> <p></p>
<div id="attachment_list" style="display:none"><div class="foswikiAttachments">
<table summary="Topic attachments" id="tableTutorialSingleHisto1" class="foswikiTable" rules="none" border="1"><caption>Topic attachments</caption>
<thead>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<th class="foswikiTableCol0 foswikiFirstCol"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=0;table=1;up=0#sorted_table" title="Sort by this column">I</a> </th>
<th class="foswikiTableCol1"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=1;table=1;up=0#sorted_table" title="Sort by this column">Attachment</a> </th>
<th class="foswikiTableCol2"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=2;table=1;up=0#sorted_table" title="Sort by this column">Action</a> </th>
<th class="foswikiTableCol3"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=3;table=1;up=0#sorted_table" title="Sort by this column">Size</a> </th>
<th class="foswikiTableCol4"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=4;table=1;up=0#sorted_table" title="Sort by this column">Date</a> </th>
<th class="foswikiTableCol5"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=5;table=1;up=0#sorted_table" title="Sort by this column">Who</a> </th>
<th class="foswikiTableCol6"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=6;table=1;up=0#sorted_table" title="Sort by this column">Comment</a> </th>
<th class="foswikiTableCol7 foswikiLastCol"> <a rel="nofollow" href="https://intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print;sortcol=7;table=1;up=0#sorted_table" title="Sort by this column">Attribute</a> </th>
</tr>
</thead>
<tbody>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="msr2data.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/TutorialSingleHisto/msr2data.png">msr2data.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/TutorialSingleHisto?filename=msr2data.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 34.2&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">20 Jul 2011 - 13:34</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td class="foswikiTableCol7 foswikiLastCol"> &nbsp; </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrt0-1.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/TutorialSingleHisto/musrt0-1.png">musrt0-1.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/TutorialSingleHisto?filename=musrt0-1.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 19.3&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">20 Jul 2011 - 13:38</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td class="foswikiTableCol7 foswikiLastCol"> &nbsp; </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrt0-2.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/TutorialSingleHisto/musrt0-2.png">musrt0-2.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/TutorialSingleHisto?filename=musrt0-2.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 19.9&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">09 Jul 2011 - 15:17</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td class="foswikiTableCol7 foswikiLastCol"> &nbsp; </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrview-1.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/TutorialSingleHisto/musrview-1.png">musrview-1.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/TutorialSingleHisto?filename=musrview-1.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 45.5&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">09 Jul 2011 - 15:48</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td class="foswikiTableCol7 foswikiLastCol"> &nbsp; </td>
</tr>
<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrview-2.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1"> <a href="../pub/MUSR/TutorialSingleHisto/musrview-2.png">musrview-2.png</a> </td>
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/TutorialSingleHisto?filename=musrview-2.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3"> 37.0&nbsp;K </td>
<td class="foswikiTableCol4"> <span class="foswikiNoBreak">09 Jul 2011 - 15:48</span> </td>
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6"> &nbsp; </td>
<td class="foswikiTableCol7 foswikiLastCol"> &nbsp; </td>
</tr>
<tr class="foswikiTableOdd foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
<td class="foswikiTableCol0 foswikiFirstCol foswikiLast"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrview-3.png" /></span><span class="foswikiHidden">png</span> </td>
<td class="foswikiTableCol1 foswikiLast"> <a href="../pub/MUSR/TutorialSingleHisto/musrview-3.png">musrview-3.png</a> </td>
<td class="foswikiTableCol2 foswikiLast"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/TutorialSingleHisto?filename=musrview-3.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
<td align="right" class="foswikiTableCol3 foswikiLast"> 42.2&nbsp;K </td>
<td class="foswikiTableCol4 foswikiLast"> <span class="foswikiNoBreak">09 Jul 2011 - 16:01</span> </td>
<td class="foswikiTableCol5 foswikiLast"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
<td class="foswikiTableCol6 foswikiLast"> &nbsp; </td>
<td class="foswikiTableCol7 foswikiLastCol foswikiLast"> &nbsp; </td>
</tr>
</tbody></table>
</div></div> </div></div>
<p></p>
</div><!-- /patternContent vom pattern template-->
<p></p>
</div>
</div>
</div> </div>
<div class="clear">&nbsp;</div> <div class="clear">&nbsp;</div>
</div><div id="patternBottomBar"><div id="patternBottomBarContents"><div id="patternWebBottomBar">Ideas, requests, problems regarding <a href="https://intranet.psi.ch/Main/WebHome">PSI Wiki</a>? <a href="mailto&#58;psi&#46;intranet&#64;psi&#46;ch&#63;subject&#61;PSI&#32;Wiki&#37;20Feedback&#37;20on&#37;20MUSR&#46;TutorialSingleHisto">Send feedback</a></div></div></div> </div></div><div id="patternTopBar">
<div id="patternTopBarContentsWrapper">
<div id="patternTopBarContents"><table border="0" cellpadding="0" cellspacing="0" style="width:100%" summary="">
<tr><td valign="middle"><span id="foswikiLogo" class="foswikiImage"><a href="WebHome.html"><img src="../pub/Main/WebPreferences/psi_logo_150.gif" border="0" alt="Paul Scherrer Institut" style="border:none; margin: -8px 0 0 15px;" /></a></span></td>
<td align="right" valign="top" class="patternMetaMenu" id="psimetanav">
<ul>
<li> <form name="quickSearchForm" action="https://intranet.psi.ch/PSI/Search"><input type="hidden" name="filter" value="web:MUSR" /><input type="text" class="foswikiInputField" id="quickSearchBox" name="search" value="" size="18" /><input type="hidden" name="scope" value="all" /><!-- <input type="hidden" name="web" value="MUSR" /> --> <noscript>&nbsp;<input type="submit" size="5" class="foswikiButton" name="submit" value="Search" />&nbsp;</noscript><input type="image" class="searchsubmit" alt="Search" value="Suche..." name="sa" src="../webbase/img/search.png"> </form>
</li> <li> <form name="changeLanguage" action="https://intranet.psi.ch/wiki/bin/oops/MUSR/TutorialSingleHisto" method="get"> <input type="hidden" name="redirectto" value="/MUSR/TutorialSingleHisto?cover=print" /> <select name="language" class="foswikiSelect" onchange="document.changeLanguage.submit()"> <option value="de">Deutsch</option> <option selected="selected" value="en">English</option></select> <input type="hidden" name="template" value="oopslanguagechanged" /> <noscript> <input class="foswikiButton" type="submit" value="Change language" /> </noscript> </form>
</li></ul>
</td></tr></table>
</div><!--/patternTopBarContents-->
</div><!--/patternTopBarContentsWrapper-->
</div><!-- /patternTopBar--><div id="patternBottomBar"><div id="patternBottomBarContents"><div id="patternWebBottomBar">Ideas, requests, problems regarding <a href="https://intranet.psi.ch/Main/WebHome">PSI Wiki</a>? <a href="mailto&#58;psi&#46;intranet&#64;psi&#46;ch&#63;subject&#61;PSI&#32;Wiki&#37;20Feedback&#37;20on&#37;20MUSR&#46;TutorialSingleHisto">Send feedback</a></div></div></div>
</div> </div>
</div> </div>
</div> </div>
</div></div><!-- /endWrap --> </div></body>
<p></p> <!-- Mirrored from intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Mon, 03 Sep 2012 07:31:57 GMT -->
<p></p>
<p></p>
<p></p>
<p></p>
</body>
<!-- Mirrored from intranet.psi.ch/MUSR/TutorialSingleHisto?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Wed, 27 Jun 2012 11:12:51 GMT -->
<!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=iso-8859-1"><!-- /Added by HTTrack --> <!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=iso-8859-1"><!-- /Added by HTTrack -->
</html> </html>
<p></p> <p></p>
<p></p> <p></p>
<p></p>
<p></p>

136
doc/html/user/MUSR/WebHome.html
View File

@ -1,31 +1,19 @@
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<html lang="en_US">
<!-- Mirrored from intranet.psi.ch/MUSR/WebHome?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Wed, 27 Jun 2012 11:13:23 GMT --> <!-- Mirrored from intranet.psi.ch/MUSR/WebHome?cover=print by HTTrack Website Copier/3.x [XR&CO'2010], Mon, 03 Sep 2012 07:32:34 GMT -->
<!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=iso-8859-1"><!-- /Added by HTTrack --> <!-- Added by HTTrack --><meta http-equiv="content-type" content="text/html;charset=iso-8859-1"><!-- /Added by HTTrack -->
<head> <head>
<link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" /> <link rel="stylesheet" href="../pub/System/HeadlinesPlugin/style.css" type="text/css" media="all" />
<title> MUSR :: WebHome</title> <title> MUSR :: WebHome</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> <meta name="robots" content="noindex" /> <link rel="alternate" type="application/rss+xml" title="RSS Feed" href="WebRsshtml.html" /> <link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<meta name="scripturl" content="https://intranet.psi.ch/wiki/bin" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" />
<meta name="scriptsuffix" content="" /> <link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/WebHome?t=1346657496" type="application/x-wiki" title="edit WebHome" />
<meta name="WEBTOPIC" content="WebHome" />
<meta name="WEB" content="MUSR" />
<meta name="SCRIPTURLPATH" content="/wiki/bin" />
<meta name="SCRIPTSUFFIX" content="" />
<meta name="TEXT_JUMP" content="Jump" />
<meta name="TEXT_SEARCH" content="Search" />
<meta name="TEXT_NUM_TOPICS" content="Number of topics:" /> <meta name="TEXT_NUM_TOPICS" content="Number of topics:" />
<meta name="TEXT_MODIFY_SEARCH" content="Modify search" /> <meta name="TEXT_MODIFY_SEARCH" content="Modify search" />
<meta name="robots" content="noindex" /><link rel="alternate" type="application/rss+xml" title="RSS Feed" href="WebRsshtml.html" />
<link rel="icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <link rel="shortcut icon" href="../pub/Main/WebPreferences/favicon.ico" type="image/x-icon" /> <base /><!--[if IE]></base><![endif]-->
<link rel="alternate" href="https://intranet.psi.ch/wiki/bin/edit/MUSR/WebHome?t=1340795558" type="application/x-wiki" title="edit WebHome" /> <style type="text/css" media="all">
<meta name="description" content="WebHome" />
<base /><!--[if IE]></base><![endif]-->
<style type="text/css" media="all">
@import url('../pub/System/SkinTemplates/base.css'); @import url('../pub/System/SkinTemplates/base.css');
</style> </style>
<style type="text/css" media="all"> <style type="text/css" media="all">
@ -107,21 +95,28 @@ pre {
box-shadow: 0 0 10px #ccc; box-shadow: 0 0 10px #ccc;
} }
</style><![endif]--> </style><![endif]-->
<link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS--> <link rel="stylesheet" href="../pub/System/FootNotePlugin/styles.css" type="text/css" media="all" /><!--FOOTNOTEPLUGIN_LINKCSS-->
</head> </head>
<body class="foswikiNoJs patternViewPage patternPrintPage"> <body class="foswikiNoJs patternViewPage">
<a name="PageTop"></a><div class="foswikiPage"><div id="patternScreen"> <a name="PageTop"></a><div class="foswikiPage"><div id="patternScreen">
<div id="patternPageShadow"> <div id="patternPageShadow">
<div id="patternPage"> <div id="patternPage">
<div id="patternOuter"> <div id="patternWrapper"><div id="patternOuter">
<div id="patternFloatWrap"> <div id="patternFloatWrap">
<div id="patternMain"> <div id="patternMain"><div id="patternClearHeaderCenter"></div>
<div id="patternMainContents"> <div id="patternMainContents"><div class="patternTop"><span class="patternHomePath foswikiLeft"><a href="WebHome.html" class="foswikiCurrentWebHomeLink foswikiCurrentTopicLink">MUSR</a></span><span class="patternToolBar foswikiRight"><span><a href='WebHomec99a.html?cover=print;cover=print' rel='nofollow' title='Printable version of this topic' accesskey='p'><span class='foswikiAccessKey'>P</span>rint version</a></span><a href="https://intranet.psi.ch/MUSR/WebHome?restrictions=on" id="restriction_link"><img src='../pub/System/PsiSkin/lock_open.png' class='lock' height='16' width='23' title='open in PSI - click for more information'/></a></span><div class="foswikiClear"></div></div><div class="foswikiContentHeader">
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<h2><a name="Documentation_of_the_SR_data_analysis_suite_61musrfit_61"></a> Documentation of the &#956;SR data analysis suite <code>musrfit</code> </h2> <ul> <h2><a name="Documentation_of_the_SR_data_analysis_suite_61musrfit_61"></a> Documentation of the &#956;SR data analysis suite <code>musrfit</code> </h2> <ul>
<li> <a href="CiteMusrFit.html">How to cite <code>musrfit</code>? <img src="../pub/Main/SmiliesPluginPSI/yes.gif" alt="yes" title="yes" border="0" /> </a> <li> <a href="CiteMusrFit.html">How to cite <code>musrfit</code>? <img src="../pub/Main/SmiliesPluginPSI/yes.gif" alt="yes" title="yes" border="0" /> </a>
@ -140,30 +135,81 @@ pre {
</li> <li> <a href="MusrFitAcknowledgements.html">Acknowledgements</a> </li> <li> <a href="MusrFitAcknowledgements.html">Acknowledgements</a>
</li></ul> </li></ul>
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2
doc/html/user/pub/System/PatternSkin/print.css
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2
src/tests/PhotoMeissner/photo_meissner.cpp
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@ -118,6 +118,8 @@ int main(int argc, char *argv[])
start_x = 0.0; start_x = 0.0;
end_x = 5.0*lam0; end_x = 5.0*lam0;
x = start_x; x = start_x;
cout << "# lam0=" << lam0 << ", lam1=" << lam1 << ", x0=" << x0 << endl;
cout << "# n=" << n << ", np=" << np << endl;
cout << "# x exp(-x/lam0) B(x) semi-infinite" << endl; cout << "# x exp(-x/lam0) B(x) semi-infinite" << endl;
do { do {
dval = In(n, np*sqrt(exp(-x/x0)))/In(n, np); dval = In(n, np*sqrt(exp(-x/x0)))/In(n, np);