updated docu. replaced MusrRoot example. some minor change in photo_meissner
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<a name="UserManual"></a>
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<h1><a name="A_61_61musrfit_61_61_User_Manual"></a> <code><b>musrfit</b></code> User Manual </h1>
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<a name="foswikiTOC"></a><div class="foswikiToc"> <ul>
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@@ -182,7 +177,7 @@ If called from within a shell it accepts several parameters: <dl>
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</dd> <dt> -c, --chisq-only </dt><dd> Instead of fitting the model, <code>musrfit</code> calculates χ<sup>2</sup> only once and sends the result to the standard output if called with this option. This might be useful for the adjustment of the initial values of the fit parameters.
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</dd> <dt> -t, --title-from-data-file </dt><dd> If this option is given <code>musrfit</code> will replace the title in the <strong><msr_file></strong> by the run title in the data file of the first run appearing in a RUN block. In case there is no run title in the data file no substitution is done.
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</dd> <dt> --dump <type> </dt><dd> is writing a data file with the fit data and the theory; <strong><type></strong> can be <strong>ascii</strong> (data in columns) or <strong>root</strong> (data in <code>ROOT</code> histograms)
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</dd> <dt> --timeout <timeout_tag> </dt><dd> overwrites the predefined timeout tag 'none'. <timeout_tag>='none' means the timeout facility is not enabled. <timeout_tag> = <code>nn</code> will set the timeout to <code>nn</code> (sec). If during a fit this timeout is reached, <code>musrfit</code> will terminate. This is used to prevent orphan musrfit process to jam the system.
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</dd> <dt> --timeout <timeout_tag> </dt><dd> overwrites the predefined timeout of 3600 sec. <timeout_tag><=0 means the timeout facility is not enabled. <timeout_tag> > 0, e.g. <code>nn</code> will set the timeout to <code>nn</code> (sec). If during a fit this timeout is reached, <code>musrfit</code> will terminate. This is used to prevent orphan musrfit process to jam the system.
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</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
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</dd> <dt> --version </dt><dd> prints the version number of <code>musrfit</code>
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</dd></dl>
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@@ -1044,6 +1039,17 @@ The PLOT block is intended to collect all the information needed for the graphic
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If no plot range is given at all, the fit range of the first run also serves as time window for the plot. In the case no information on the axis of ordinates is available, the plotting range is chosen so that all data can be presented.
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<p></p>
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It is possible to define multiple PLOT blocks. Each PLOT block generates its own <code>ROOT</code> canvas.
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<p></p>
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A few comments concerning the rotating reference frame (rrf) plot option: the idea of the rrf is to transform a high frequency μSR spectrum into a low frequency spectrum. This is essentially done by multiplying the original asymmetry <img alt="A(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_125ae4b9a7d16163023ce9cb3043aa0a.png" /> by <img alt="\cos(\omega_{\rm rrf} t + \phi_{\rm rrf})" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_edb200aa0d625d2d5cebb519d8d1f838.png" />. This leads to two frequency shifted copies of the original <img alt="A(t)" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_125ae4b9a7d16163023ce9cb3043aa0a.png" />, one shifted downwards in frequency by <img alt="\omega_{\rm rrf}" class="mmpImage" src="../pub/MUSR/MusrFit/_MathModePlugin_89458ff127e694cf28c0cdc314de62d1.png" /> (to wanted one) and one upwards (unwanted one). In order to get rid of the upward shifted spectrum, the <code>rrf_packing</code> is used, we just over-bin the high frequency copy (for now. In the future this will be dealt with FIR filtering)! The theory, however, is filtered via Kaiser filter. Here a short example:
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<p></p>
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<pre>
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###############################################################
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PLOT 0 (single histo plot)
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runs 1
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range 0 10 -0.3 0.3
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rrf_freq 13900 G
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rrf_packing 75
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</pre>
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<p></p>
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<a name="TheStatisticBlock"></a>
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<h2><a name="A_4.9_The_STATISTIC_Block"></a> 4.9 The STATISTIC Block </h2>
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@@ -1410,76 +1416,93 @@ A technical description of the musrfit framework can be found <a href="http://lm
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<p></p>
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For reporting bugs or requesting new features and improvements please use the <a href="https://tracker.intranet.psi.ch/jira/browse/MUSR" target="_top">PSI Tracker</a> or send an e-mail to A. Suter.
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</div></div><div class="patternInfo"><span class="patternRevInfo">Topic revision: 04 Jul 2012, <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a></span></div>
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<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrFit/Makefile.TMyLibrary">Makefile.TMyLibrary</a> </td>
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<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrFit?filename=Makefile.TMyLibrary;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
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<td align="right" class="foswikiTableCol3"> 1.5 K </td>
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<td class="foswikiTableCol4"> <span class="foswikiNoBreak">09 Feb 2009 - 16:15</span> </td>
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<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
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<td class="foswikiTableCol6"> GNU Makefile for building a shared library containing user defined functions to be used in musrfit </td>
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<td align="right" class="foswikiTableCol7 foswikiLastCol"> h </td>
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<td class="foswikiTableCol0 foswikiFirstCol"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="Theory-Tree-with-UserFcn.png" /></span><span class="foswikiHidden">png</span> </td>
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<td class="foswikiTableCol1"> <a href="../pub/MUSR/MusrFit/Theory-Tree-with-UserFcn.png">Theory-Tree-with-UserFcn.png</a> </td>
|
||||
<td class="foswikiTableCol2"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrFit?filename=Theory-Tree-with-UserFcn.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
|
||||
<td align="right" class="foswikiTableCol3"> 66.9 K </td>
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<td class="foswikiTableCol4"> <span class="foswikiNoBreak">10 Nov 2010 - 22:20</span> </td>
|
||||
<td class="foswikiTableCol5"> <a href="https://intranet.psi.ch/Main/AndreasSuter">AndreasSuter</a> </td>
|
||||
<td class="foswikiTableCol6"> </td>
|
||||
<td class="foswikiTableCol7 foswikiLastCol"> </td>
|
||||
</tr>
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<tr class="foswikiTableEven foswikiTableRowdataBgSorted0 foswikiTableRowdataBg0">
|
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<td class="foswikiTableCol0 foswikiFirstCol foswikiLast"> <span class="foswikiIcon"><img src="../pub/System/DocumentGraphics/png.png" width="16" height="16" alt="musrt0.png" /></span><span class="foswikiHidden">png</span> </td>
|
||||
<td class="foswikiTableCol1 foswikiLast"> <a href="../pub/MUSR/MusrFit/musrt0.png">musrt0.png</a> </td>
|
||||
<td class="foswikiTableCol2 foswikiLast"> <a href="https://intranet.psi.ch/wiki/bin/attach/MUSR/MusrFit?filename=musrt0.png;revInfo=1" title="change, update, previous revisions, move, delete..." rel="nofollow">manage</a> </td>
|
||||
<td align="right" class="foswikiTableCol3 foswikiLast"> 7.2 K </td>
|
||||
<td class="foswikiTableCol4 foswikiLast"> <span class="foswikiNoBreak">08 May 2011 - 11:33</span> </td>
|
||||
<td class="foswikiTableCol5 foswikiLast"> <a href="https://intranet.psi.ch/Main/BastianWojek">BastianWojek</a> </td>
|
||||
<td class="foswikiTableCol6 foswikiLast"> exemplary musrt0 canvas </td>
|
||||
<td class="foswikiTableCol7 foswikiLastCol foswikiLast"> </td>
|
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</tr>
|
||||
</tbody></table>
|
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</div></div>
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<p></p>
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</div><!-- /patternContent vom pattern template-->
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<p></p>
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||||
</div>
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</div>
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</div>
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<div class="clear"> </div>
|
||||
</div><div id="patternBottomBar"><div id="patternBottomBarContents"><div id="patternWebBottomBar">Ideas, requests, problems regarding <a href="https://intranet.psi.ch/Main/WebHome">PSI Wiki</a>? <a href="mailto:psi.intranet@psi.ch?subject=PSI Wiki%20Feedback%20on%20MUSR.MusrFit">Send feedback</a></div></div></div>
|
||||
</div></div><div id="patternTopBar">
|
||||
<div id="patternTopBarContentsWrapper">
|
||||
<div id="patternTopBarContents"><table border="0" cellpadding="0" cellspacing="0" style="width:100%" summary="">
|
||||
<tr><td valign="middle"><span id="foswikiLogo" class="foswikiImage"><a href="WebHome.html"><img src="../pub/Main/WebPreferences/psi_logo_150.gif" border="0" alt="Paul Scherrer Institut" style="border:none; margin: -8px 0 0 15px;" /></a></span></td>
|
||||
<td align="right" valign="top" class="patternMetaMenu" id="psimetanav">
|
||||
<ul>
|
||||
<li> <form name="quickSearchForm" action="https://intranet.psi.ch/PSI/Search"><input type="hidden" name="filter" value="web:MUSR" /><input type="text" class="foswikiInputField" id="quickSearchBox" name="search" value="" size="18" /><input type="hidden" name="scope" value="all" /><!-- <input type="hidden" name="web" value="MUSR" /> --> <noscript> <input type="submit" size="5" class="foswikiButton" name="submit" value="Search" /> </noscript><input type="image" class="searchsubmit" alt="Search" value="Suche..." name="sa" src="../webbase/img/search.png"> </form>
|
||||
</li> <li> <form name="changeLanguage" action="https://intranet.psi.ch/wiki/bin/oops/MUSR/MusrFit" method="get"> <input type="hidden" name="redirectto" value="/MUSR/MusrFit?cover=print" /> <select name="language" class="foswikiSelect" onchange="document.changeLanguage.submit()"> <option value="de">Deutsch</option> <option selected="selected" value="en">English</option></select> <input type="hidden" name="template" value="oopslanguagechanged" /> <noscript> <input class="foswikiButton" type="submit" value="Change language" /> </noscript> </form>
|
||||
</li></ul>
|
||||
</td></tr></table>
|
||||
</div><!--/patternTopBarContents-->
|
||||
</div><!--/patternTopBarContentsWrapper-->
|
||||
</div><!-- /patternTopBar--><div id="patternBottomBar"><div id="patternBottomBarContents"><div id="patternWebBottomBar">Ideas, requests, problems regarding <a href="https://intranet.psi.ch/Main/WebHome">PSI Wiki</a>? <a href="mailto:psi.intranet@psi.ch?subject=PSI Wiki%20Feedback%20on%20MUSR.MusrFit">Send feedback</a></div></div></div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div></div><!-- /endWrap -->
|
||||
<p></p>
|
||||
<p></p>
|
||||
<p></p>
|
||||
<p></p>
|
||||
<p></p>
|
||||
</body>
|
||||
|
||||
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||||
</html>
|
||||
<p></p>
|
||||
<p></p>
|
||||
<p></p>
|
||||
<p></p>
|
||||
Reference in New Issue
Block a user