update of the docu which now describes the RRF option.

This commit is contained in:
2016-01-22 16:16:29 +01:00
parent a35884b86c
commit d0da0dd063
21 changed files with 2193 additions and 4494 deletions

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<h1 id="A_61_61musredit_47_40musrgui_41_61_61"> <code><b>musredit / (musrgui)</b></code> </h1>
<p></p>
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<h1><a name="A_61_61musredit_47_40musrgui_41_61_61"></a> <code><b>musredit / (musrgui)</b></code> </h1>
<p></p>
<a name="foswikiTOC"></a><div class="foswikiToc"> <ul>
<div id="foswikiTOC" class="foswikiToc"> <ul>
<li> <a href="MusrGui.html#A_61_61musredit_47_40musrgui_41_61_61"> musredit / (musrgui) </a>
</li> <li> <a href="MusrGui.html#A_1_Introduction"> 1 Introduction </a>
</li> <li> <a href="MusrGui.html#A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"> 2 Available Executables, Configuration Files and their Basic Usage </a> <ul>
@@ -133,14 +173,14 @@ pre {
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<p></p>
<h1><a name="A_1_Introduction"></a> 1 Introduction </h1>
<code>musredit</code> and <code>musrgui</code> are editors which also provide a graphical user interface to the programs contained in the <code><a href="MusrFit.html">musrfit</a></code> suite and are intended to help the user handle <code>musrfit</code> msr files. They are implemented in <code>C++</code> and use the <a href="http://qt.nokia.com/" target="_top">Qt</a> framework. Principally, <code>musrgui</code> and <code>musredit</code> are doing the same, but are based on different Qt versions. <code>musrgui</code> is based on Qt 3.x and will only be maintained on bug-fixing level since the Qt 3.x licensing is less straight forward than the Qt 4.x one. <code>musredit</code> is based on Qt 4.6 (or above) and this is the program which will be developed further.<br>
<h1 id="A_1_Introduction"> 1 Introduction </h1>
<code>musredit</code> and <code>musrgui</code> are editors which also provide a graphical user interface to the programs contained in the <code><a href="MusrFit.html">musrfit</a></code> suite and are intended to help the user handle <code>musrfit</code> msr files. They are implemented in <code>C++</code> and use the <a href="http://qt.nokia.com/">Qt</a> framework. Principally, <code>musrgui</code> and <code>musredit</code> are doing the same, but are based on different Qt versions. <code>musrgui</code> is based on Qt 3.x and will only be maintained on bug-fixing level since the Qt 3.x licensing is less straight forward than the Qt 4.x one. <code>musredit</code> is based on Qt 4.6 (or above) and this is the program which will be developed further.<br>
On this documentation page only the features related to <code>musrfit</code> are described&mdash;the basic editor functions which should be self-explanatory are not.
<strong><span class='foswikiRedFG'>Before going on using <code>musrgui</code> / <code>musredit</code> it is strongly recommended to read the <a href="MusrFit.html">manual</a> of <code>musrfit</code> first!</span></strong>
<p></p>
<h1><a name="A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"></a> 2 Available Executables, Configuration Files and their Basic Usage </h1>
<a name="MusrEdit"></a>
<h2><a name="A_2.1_musredit_47_40musrgui_41"></a> 2.1 musredit / (musrgui) </h2>
<h1 id="A_2_Available_Executables_44_Configuration_Files_and_their_Basic_Usage"> 2 Available Executables, Configuration Files and their Basic Usage </h1>
<span id="MusrEdit"></span>
<h2 id="A_2.1_musredit_47_40musrgui_41"> 2.1 musredit / (musrgui) </h2>
<code>musredit</code> / <code>musrgui</code> are the editor executables. If called from within a shell they accept a few optional parameters: <dl>
<dt> &lt;msr_files&gt; </dt><dd> file names of the msr files that should be opened in separate editor tabs on startup of <code>musrgui</code> / <code>musredit</code>.
</dd> <dt> --help </dt><dd> displays a small help notice in the shell explaining the basic usage of the program
@@ -149,8 +189,8 @@ On this documentation page only the features related to <code>musrfit</code> are
<p></p>
If called without any parameters an empty editor window opens.
<p></p>
<a name="MusreditStartupXml"></a>
<h2><a name="A_2.2_musredit_startup.xml_47_musrgui_startup.xml"></a> 2.2 musredit_startup.xml / musrgui_startup.xml </h2>
<span id="MusreditStartupXml"></span>
<h2 id="A_2.2_musredit_startup.xml_47_musrgui_startup.xml"> 2.2 musredit_startup.xml / musrgui_startup.xml </h2>
<code><b>musredit_startup.xml</b></code> / <code><b>musrgui_startup.xml</b></code> are configuration files located at the <code>musredit</code> / <code>musrgui</code> binary path. It is also possible to have another version of this file in the working directory which then will be used!
<p></p>
In this file the following XML tags are allowed to define settings and might proof useful for all users of <code>musredit</code> / <code>musrgui</code>: <dl>
@@ -190,13 +230,13 @@ Additionally, there are some settings defined in this XML file which should be o
<dt> &lt;help_section&gt;&lt;/help_section&gt; </dt><dd> define various help messages in this environment <dl>
<dt> &lt;help_main&gt;HELP TEXT&lt;/help_main&gt; </dt><dd> set the main help message <strong>HELP TEXT</strong> here (inside a &lt;help_section&gt; environment)
</dd></dl>
</dd> <dt> &lt;func_pixmap_path&gt;PIX_PATH&lt;/func_pixmap_path&gt; </dt><dd> set the path <strong>PIX_PATH</strong> to <img alt="LaTeX_logo.png" src="../pub/MUSR/MusrGui/LaTeX_logo.png" /> pixmaps visualizing the various supported theory functions
</dd> <dt> &lt;func_pixmap_path&gt;PIX_PATH&lt;/func_pixmap_path&gt; </dt><dd> set the path <strong>PIX_PATH</strong> to <img src="../pub/MUSR/MusrGui/LaTeX_logo.png" alt="LaTeX_logo.png" /> pixmaps visualizing the various supported theory functions
</dd> <dt> &lt;theory_functions&gt;&lt;/theory_functions&gt; </dt><dd> define the functions for a msr file's THEORY block <a href="MusrFit.html#TheoryTable">according to the correct syntax</a> in this environment <dl>
<dt> &lt;func&gt;&lt;/func&gt; </dt><dd> specify a function here (inside a &lt;theory_functions&gt; environment) <dl>
<dt> &lt;name&gt;NAME&lt;/name&gt; </dt><dd> the <strong>NAME</strong> of the function in the msr file (inside a &lt;func&gt; environment)
</dd> <dt> &lt;comment&gt;COMMENT&lt;/comment&gt; </dt><dd> description of the used parameters (inside a &lt;func&gt; environment)
</dd> <dt> &lt;label&gt;LABEL&lt;/label&gt; </dt><dd> <strong>LABEL</strong> of the function in the <code>musrgui</code> / <code>musredit</code> menu (inside a &lt;func&gt; environment)
</dd> <dt> &lt;pixmap&gt;PIXMAP&lt;/pixmap&gt; </dt><dd> <img alt="LaTeX_logo.png" src="../pub/MUSR/MusrGui/LaTeX_logo.png" /> picture used to describe the function and stored in the <strong>PIX_PATH</strong> (inside a &lt;func&gt; environment)
</dd> <dt> &lt;pixmap&gt;PIXMAP&lt;/pixmap&gt; </dt><dd> <img src="../pub/MUSR/MusrGui/LaTeX_logo.png" alt="LaTeX_logo.png" /> picture used to describe the function and stored in the <strong>PIX_PATH</strong> (inside a &lt;func&gt; environment)
</dd> <dt> &lt;params&gt;N&lt;/params&gt; </dt><dd> number of parameters <strong>N</strong> used by the function (inside a &lt;func&gt; environment)
</dd></dl>
</dd></dl>
@@ -266,141 +306,94 @@ An example of the <code><b>musrgui_startup.xml</b></code> looks like:
&#60;/musrgui&#95;startup&#62;
</pre>
<p></p>
<a name="MusrfitFeatures"></a>
<h1><a name="A_3_61_61musrfit_61_61_Features"></a> 3 <code><b>musrfit</b></code> Features </h1>
<span id="MusrfitFeatures"></span>
<h1 id="A_3_61_61musrfit_61_61_Features"> 3 <code><b>musrfit</b></code> Features </h1>
The features of <code>musrfit</code> which can be accessed by the graphical front ends <code>musrgui</code> / <code>musredit</code> are described in the following. All functions can either be called by choosing them from the MusrFit menu, by clicking the respective button in the MusrFit bar, or by using a keyboard shortcut.
<p></p> <dl>
<dt> <img alt="musrasym.png" src="../pub/MUSR/MusrGui/musrasym.png" /> Asymmetry Default (Alt+a) </dt><dd> Generate a full msr file suitable for the <a href="MusrFit.html#FitTypes">fit type</a> <strong>2</strong> of <code>musrfit</code> from defaults. Calling this function opens a window where the relative path and file name to a data file as well as the file format that should be used have to be specified. For instance if the data file <code><b>/path-to-datadir/2007/lem07_his_8472.root</b></code> should be used and <code><b>/path-to-datadir</b></code> is on the path where <code>musrfit</code> <a href="MusrFit.html#PathToDataFiles">looks for data files</a> then the file name would be <code><b>2007/lem07_his_8472</b></code> and the file format either <strong>ROOT-NPP</strong> or <strong>ROOT-PPC</strong>.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrsinglehisto.png" src="../pub/MUSR/MusrGui/musrsinglehisto.png" /> Single-Histogram Default (Alt+h) </dt><dd> Generate a full msr file suitable for the <a href="MusrFit.html#FitTypes">fit type</a> <strong>0</strong> of <code>musrfit</code> from defaults. Calling this function opens a window where the relative path and file name to a data file as well as the file format that should be used have to be specified. For instance if the data file <code><b>/path-to-datadir/d2007/deltat_pta_gps_8472.bin</b></code> should be used and <code><b>/path-to-datadir</b></code> is on the path where <code>musrfit</code> <a href="MusrFit.html#PathToDataFiles">looks for data files</a> then the file name would be <code><b>d2007/deltat_pta_gps_8472</b></code> and the file format <strong>PSI-BIN</strong>.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrcalcchisq.png" src="../pub/MUSR/MusrGui/musrcalcchisq.png" /> Calculate Chisq (Alt+c) </dt><dd> <pre class="bash">musrfit &#60;msr&#95;file&#62; --chisq-only</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrfit.png" src="../pub/MUSR/MusrGui/musrfit.png" /> Fit (Alt+f) </dt><dd> <pre class="bash">musrfit &#60;msr&#95;file&#62; &#91;optional parameters]</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. The optional parameters may be chosen under <a href="#MusrPrefs" class="foswikiCurrentTopicLink">Preferences</a>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrswap.png" src="../pub/MUSR/MusrGui/musrswap.png" /> Swap Msr &#8596; Mlog (Alt+s) </dt><dd> Swap the msr and mlog files. E.g., for a file called <code><b>8472_zf.msr</b></code>, this is copied to <code><b>8472_zf.mlog</b></code> and vice versa.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrmsr2data.png" src="../pub/MUSR/MusrGui/musrmsr2data.png" /> Msr2data (Alt+m) </dt><dd> Opens a graphical interface to the <code>msr2data</code> program described in detail in its own <a href="Msr2Data.html#MusrGuiInterface">manual</a>.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrview.png" src="../pub/MUSR/MusrGui/musrview.png" /> View (Alt+v) </dt><dd> <pre class="bash">musrview &#60;msr&#95;file&#62;</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrView">manual</a> of <code>musrfit</code>.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrt0.png" src="../pub/MUSR/MusrGui/musrt0.png" /> T0 (Alt+t) </dt><dd> <pre class="bash">musrt0 &#60;msr&#95;file&#62;</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrT0">manual</a> of <code>musrfit</code>.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrFT.png" src="../pub/MUSR/MusrGui/musrFT.png" /> Raw Fourier </dt><dd> <code>musrFT &lt;with-many-options&gt;</code> is called. For a proper documentation of it, check the <a href="MusrFit.html#MusrFT">manual</a> of <code>musrFT</code>.
</dd></dl>
<p></p>
<a name="MusrPrefs"></a> <dl>
<dt> <img alt="musrprefs.png" src="../pub/MUSR/MusrGui/musrprefs.png" /> Preferences (Alt+p) </dt><dd> Opens a window in which the optional parameters that should be passed to <code>musrfit</code> can be chosen. These options are <code><b>--keep-mn2-output</b></code>, <code><b>--dump ascii</b></code>, <code><b>--dump root</b></code>, and <code><b>--title-from-data-file</b></code>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>. Additionally, the access to <code>musrt0</code> can be enabled temporarily.
</dd></dl>
<p></p> <dl>
<dt> <img alt="musrdump.png" src="../pub/MUSR/MusrGui/musrdump.png" /> Dump Header </dt><dd> Opens a file dialog which allows to select a &mu;SR data file. When this file can be read, the run header info is dumped into a dialog window. Essentially this calls <code><b>dump_header</b></code> internally.
</dd></dl>
$ <img src="../pub/MUSR/MusrGui/musrasym.png" alt="musrasym.png" /> Asymmetry Default (Alt+a): Generate a full msr file suitable for the <a href="MusrFit.html#FitTypes">fit type</a> <strong>2</strong> of <code>musrfit</code> from defaults. Calling this function opens a window where the relative path and file name to a data file as well as the file format that should be used have to be specified. For instance if the data file <code><b>/path-to-datadir/2007/lem07_his_8472.root</b></code> should be used and <code><b>/path-to-datadir</b></code> is on the path where <code>musrfit</code> <a href="MusrFit.html#PathToDataFiles">looks for data files</a> then the file name would be <code><b>2007/lem07_his_8472</b></code> and the file format either <strong>ROOT-NPP</strong> or <strong>ROOT-PPC</strong>.
<p></p>
<a name="EditorFeatures"></a>
<h1><a name="A_4_Editor_Features"></a> 4 Editor Features </h1>
$ <img src="../pub/MUSR/MusrGui/musrsinglehisto.png" alt="musrsinglehisto.png" /> Single-Histogram Default (Alt+h): Generate a full msr file suitable for the <a href="MusrFit.html#FitTypes">fit type</a> <strong>0</strong> of <code>musrfit</code> from defaults. Calling this function opens a window where the relative path and file name to a data file as well as the file format that should be used have to be specified. For instance if the data file <code><b>/path-to-datadir/d2007/deltat_pta_gps_8472.bin</b></code> should be used and <code><b>/path-to-datadir</b></code> is on the path where <code>musrfit</code> <a href="MusrFit.html#PathToDataFiles">looks for data files</a> then the file name would be <code><b>d2007/deltat_pta_gps_8472</b></code> and the file format <strong>PSI-BIN</strong>.
<p></p>
$ <img alt="musrcalcchisq.png" src="../pub/MUSR/MusrGui/musrcalcchisq.png" /> Calculate Chisq (Alt+c): <pre class="bash">musrfit &#60;msr&#95;file&#62; --chisq-only</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
<p></p>
$ <img src="../pub/MUSR/MusrGui/musrfit.png" alt="musrfit.png" /> Fit (Alt+f): <pre class="bash">musrfit &#60;msr&#95;file&#62; &#91;optional parameters&#93;</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. The optional parameters may be chosen under <a class="foswikiCurrentTopicLink" href="#MusrPrefs">Preferences</a>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>.
<p></p>
$ <img alt="musrswap.png" src="../pub/MUSR/MusrGui/musrswap.png" /> Swap Msr &#8596; Mlog (Alt+s): Swap the msr and mlog files. E.g., for a file called <code><b>8472_zf.msr</b></code>, this is copied to <code><b>8472_zf.mlog</b></code> and vice versa.
<p></p>
$ <img src="../pub/MUSR/MusrGui/musrmsr2data.png" alt="musrmsr2data.png" /> Msr2data (Alt+m): Opens a graphical interface to the <code>msr2data</code> program described in detail in its own <a href="Msr2Data.html#MusrGuiInterface">manual</a>.
<p></p>
$ <img src="../pub/MUSR/MusrGui/musrview.png" alt="musrview.png" /> View (Alt+v): <pre class="bash">musrview &#60;msr&#95;file&#62;</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrView">manual</a> of <code>musrfit</code>.
<p></p>
$ <img alt="musrt0.png" src="../pub/MUSR/MusrGui/musrt0.png" /> T0 (Alt+t): <pre class="bash">musrt0 &#60;msr&#95;file&#62;</pre> is called for the <strong>&lt;msr_file&gt;</strong> selected in the editor. For further information refer to the <a href="MusrFit.html#MusrT0">manual</a> of <code>musrfit</code>.
<p></p>
$ <img src="../pub/MUSR/MusrGui/musrFT.png" alt="musrFT.png" /> Raw Fourier: <code>musrFT &lt;with-many-options&gt;</code> is called. For a proper documentation of it, check the <a href="MusrFit.html#MusrFT">manual</a> of <code>musrFT</code>.
<p></p>
<span id="MusrPrefs"></span>
$ <img src="../pub/MUSR/MusrGui/musrprefs.png" alt="musrprefs.png" /> Preferences (Alt+p): Opens a window in which the optional parameters that should be passed to <code>musrfit</code> can be chosen. These options are <code><b>--keep-mn2-output</b></code>, <code><b>--dump ascii</b></code>, <code><b>--dump root</b></code>, and <code><b>--title-from-data-file</b></code>. For further information refer to the <a href="MusrFit.html#MusrFit">manual</a> of <code>musrfit</code>. Additionally, the access to <code>musrt0</code> can be enabled temporarily.
<p></p>
$ <img alt="musrdump.png" src="../pub/MUSR/MusrGui/musrdump.png" /> Dump Header: Opens a file dialog which allows to select a &mu;SR data file. When this file can be read, the run header info is dumped into a dialog window. Essentially this calls <code><b>dump_header</b></code> internally.
<p></p>
<span id="EditorFeatures"></span>
<h1 id="A_4_Editor_Features"> 4 Editor Features </h1>
Besides the functions described above and which are mostly interfacing <code>musrfit/msr2data</code> the editors of <code>musrgui</code> / <code>musredit</code> offer various functions for manipulating especially <code>musrfit</code> msr files:
<img src="../pub/MUSR/MusrGui/musrgui-editor-v0.png" alt="musrgui editor features" width='415' height='566' align="right" /> <ul>
<img class='imagePlain imagePlain_right ' src='../pub/MUSR/MusrGui/igp_6000206c604d890d5466ca71a2eda191_musrgui-editor-v0.png' alt='musrgui editor features' title='musrgui-editor-v0.png' width='415' height='566' style='' /> <ul>
<li> Upon right-clicking an open msr file a menu as shown to the right is displayed which offers the addition of any valid msr file block or theory function. In case a simple theory function is chosen, the function will be inserted into the THEORY block using the <a href="MusrFit.html#TheoryTable">correct syntax</a>. If one chooses to add a whole block to the file a dialog opens in which the necessary information for each block as described in the <a href="MusrFit.html#DescriptionOfTheMsrFileFormat">manual</a> of <code>musrfit</code> can be supplied. <span class='foswikiBlueFG'>This feature is available only in <code>musrgui</code>. In <code>musredit</code> the respective functions can be accessed through the <em>Edit</em> menu.</span>
</li> <li> In order to comment or uncomment lines in a msr file select the according lines and apply <strong>Edit &rarr; (Un)Comment</strong> or use the keyboard shortcut <strong>Ctrl+(Shift)+m</strong>.
</li></ul>
<p></p>
<a name="BugTracking"></a>
<h1><a name="A_5_Bugtracking"></a> 5 Bugtracking </h1>
<span id="BugTracking"></span>
<h1 id="A_5_Bugtracking"> 5 Bugtracking </h1>
<p></p>
For reporting bugs or requesting new features and improvements please use the <a href="https://bitbucket.org/muonspin/musrfit/issues" target="_top">Bitbucket Tracker</a>, <a href="https://tracker.psi.ch/jira/browse/MUSR/" target="_top">PSI Tracker</a> (PSI account needed) or send an e-mail to A. Suter.
For reporting bugs or requesting new features and improvements please use the <a href="https://bitbucket.org/muonspin/musrfit/issues">Bitbucket Tracker</a>, <a href="https://tracker.psi.ch/jira/browse/MUSR/">PSI Tracker</a> (PSI account needed) or send an e-mail to A. Suter.
<p></p>
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<td style="text-align:right" class="foswikiTableCol3 foswikiLast"> 37 K </td>
<td class="foswikiTableCol4 foswikiLast"> <span class="foswikiNoBreak">10 Apr 2009 - 14:53</span> </td>
<td class="foswikiTableCol5 foswikiLast"> <a href="https://intranet.psi.ch/Main/UnknownUser">UnknownUser</a> </td>
<td class="foswikiTableCol6 foswikiLastCol foswikiLast"> musrgui options available upon right clicking a open msr-file </td>
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Topic revision: <span class='patternRevInfo'>19 Feb 2015, suter_a</span></div>
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