From 82164a3b57273137f5e58b19a9bbf5e2e6567174 Mon Sep 17 00:00:00 2001
From: Andreas Suter <andreas.suter@psi.ch>
Date: Mon, 15 Oct 2018 16:00:37 +0200
Subject: [PATCH 1/4] cleaned up outdated comment.

---
 CMakeLists.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 16e4559b..43149c13 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -28,7 +28,7 @@ endif()
 
 #--- perform some checks and generate the config.h ----------------------------
 
-#--- the next three lines are needed that the math functions are found --------
+#--- the next two lines are needed that the math functions are found ----------
 set(CMAKE_REQUIRED_INCLUDES math.h)
 set(CMAKE_REQUIRED_LIBRARIES m) 
 

From 5909d59f32b7254c3f62c3d4a84911c828ae4249 Mon Sep 17 00:00:00 2001
From: Andreas Suter <andreas.suter@psi.ch>
Date: Mon, 15 Oct 2018 16:09:17 +0200
Subject: [PATCH 2/4] allow multiple Fourier phase parameters for phase shifted
 real Fourier. Autophasing still missing.

---
 src/classes/PMsr2Data.cpp       |   5 +-
 src/classes/PMsrHandler.cpp     | 433 +++++++++++++++++++++++++++++---
 src/classes/PMusrCanvas.cpp     |  54 ++--
 src/classes/PStartupHandler.cpp |   3 +-
 src/include/PMsrHandler.h       |   5 +
 src/include/PMusr.h             |   4 +-
 src/include/PMusrCanvas.h       |   2 +-
 7 files changed, 436 insertions(+), 70 deletions(-)

diff --git a/src/classes/PMsr2Data.cpp b/src/classes/PMsr2Data.cpp
index 39752f9d..4dd082dd 100644
--- a/src/classes/PMsr2Data.cpp
+++ b/src/classes/PMsr2Data.cpp
@@ -1025,12 +1025,11 @@ bool PMsr2Data::PrepareGlobalInputFile(unsigned int tempRun, const string &msrOu
     }
 
     // FOURIER block - in case a parameter is used for the phase
-    tempPar = fMsrHandler->GetMsrFourierList()->fPhaseParamNo;
-    if (tempPar > 0) {
+    if (fMsrHandler->GetMsrFourierList()->fPhaseParamNo.size() > 0) {
       // go through the whole parameter list ...
       for (unsigned int k(0); k < msrParamList->size(); ++k) {
         if (tempPar == msrParamList->at(k).fNo) {
-          fMsrHandler->GetMsrFourierList()->fPhaseParamNo = k + 1;
+          fMsrHandler->GetMsrFourierList()->fPhaseParamNo.push_back(k + 1);
           break;
         }
       }
diff --git a/src/classes/PMsrHandler.cpp b/src/classes/PMsrHandler.cpp
index a1b20238..793a84be 100644
--- a/src/classes/PMsrHandler.cpp
+++ b/src/classes/PMsrHandler.cpp
@@ -324,6 +324,15 @@ Int_t PMsrHandler::ReadMsrFile()
     CheckLegacyLifetimecorrection(); // check if lifetimecorrection is found in RUN blocks, if yes transfer it to PLOT blocks
   }
 
+  // check if the given phases in the Fourier block are in agreement with the Plot block settings
+  if ((fFourier.fPhase.size() > 1) && (fPlots.size() > 0)) {
+    if (fFourier.fPhase.size() != fPlots[0].fRuns.size()) {
+      cerr << endl << ">> PMsrHandler::ReadMsrFile: **ERROR** if more than one phase is given in the Fourier block,";
+      cerr << endl << ">>     it needs to correspond to the number of runs in the Plot block!" << endl;
+      result = PMUSR_MSR_SYNTAX_ERROR;
+    }
+  }
+
   // clean up
   fit_parameter.clear();
   theory.clear();
@@ -1116,12 +1125,15 @@ Int_t PMsrHandler::WriteMsrLogFile(const Bool_t messages)
           fout << "   # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE, PHASE_OPT_REAL";
           fout << endl;
         } else if (sstr.BeginsWith("phase")) {
-          if (fFourier.fPhaseParamNo > 0) {
-            fout << "phase            par" << fFourier.fPhaseParamNo << endl;
-          } else {
-            if (fFourier.fPhase != -999.0) {
-              fout << "phase            " << fFourier.fPhase << endl;
+          if (fFourier.fPhaseParamNo.size() > 0) {
+            TString phaseParamStr = BeautifyFourierPhaseParameterString();
+            fout << "phase            " << phaseParamStr << endl;
+          } else if (fFourier.fPhase.size() > 0) {
+            fout << "phase            ";
+            for (UInt_t i=0; i<fFourier.fPhase.size()-1; i++) {
+              fout << fFourier.fPhase[i] << ", ";
             }
+            fout << fFourier.fPhase[fFourier.fPhase.size()-1] << endl;
           }
         } else if (sstr.BeginsWith("range_for_phase_correction")) {
           fout << "range_for_phase_correction  " << fFourier.fRangeForPhaseCorrection[0] << "    " << fFourier.fRangeForPhaseCorrection[1] << endl;
@@ -2198,11 +2210,16 @@ Int_t PMsrHandler::WriteMsrFile(const Char_t *filename, map<UInt_t, TString> *co
       fout << endl;
     }
 
-    // phase
-    if (fFourier.fPhaseParamNo > 0) {
-      fout << "phase            par" << fFourier.fPhaseParamNo << endl;
-    } else if (fFourier.fPhase != -999.0) {
-      fout << "phase            " << fFourier.fPhase << endl;
+    // phase    
+    if (fFourier.fPhaseParamNo.size() > 0) {
+      TString phaseParamStr = BeautifyFourierPhaseParameterString();
+      fout << "phase            " << phaseParamStr << endl;
+    } else if (fFourier.fPhase.size() > 0) {
+      fout << "phase            ";
+      for (UInt_t i=0; i<fFourier.fPhase.size()-1; i++) {
+        fout << fFourier.fPhase[i] << ", ";
+      }
+      fout << fFourier.fPhase[fFourier.fPhase.size()-1] << endl;
     }
 
     // range_for_phase_correction
@@ -3859,14 +3876,274 @@ void PMsrHandler::InitFourierParameterStructure(PMsrFourierStructure &fourier)
   fourier.fDCCorrected = false;                   // dc-corrected FFT, default: false
   fourier.fApodization = FOURIER_APOD_NOT_GIVEN;  // apodization, default: NOT GIVEN
   fourier.fPlotTag = FOURIER_PLOT_NOT_GIVEN;      // initial plot tag, default: NOT GIVEN
-  fourier.fPhaseParamNo = 0;                      // initial parameter no = 0 means not a parameter
-  fourier.fPhase = -999.0;                        // fourier phase: -999 = NOT GIVEN
+  fourier.fPhaseParamNo.clear();                  // initial phase parameter no vector is empty
+  fourier.fPhase.clear();                         // initial phase vector is empty
   for (UInt_t i=0; i<2; i++) {
-    fourier.fRangeForPhaseCorrection[i] = -1.0;  // frequency range for phase correction, default: {-1, -1} = NOT GIVEN
-    fourier.fPlotRange[i] = -1.0;                // fourier plot range, default: {-1, -1} = NOT GIVEN
+    fourier.fRangeForPhaseCorrection[i] = -1.0;   // frequency range for phase correction, default: {-1, -1} = NOT GIVEN
+    fourier.fPlotRange[i] = -1.0;                 // fourier plot range, default: {-1, -1} = NOT GIVEN
   }
 }
 
+//--------------------------------------------------------------------------
+// RemoveComment (private)
+//--------------------------------------------------------------------------
+/**
+ * <p>Removes a potentially present comment from str and returns the truncated
+ * string in truncStr. A comment starts with '#'
+ *
+ * @param str original string which might contain a comment
+ * @param truncStr string from which the comment has been removed
+ */
+void PMsrHandler::RemoveComment(const TString &str, TString &truncStr)
+{
+  truncStr = str;
+  Ssiz_t idx = str.First('#'); // find the index of the comment character
+
+  // truncate string if comment is found
+  if (idx > 0) {
+    truncStr.Resize(idx-1);
+  }
+}
+
+//--------------------------------------------------------------------------
+// ParseFourierPhaseValueVector (private)
+//--------------------------------------------------------------------------
+/**
+ * <p>examines if str has the form 'phase val0 [sep val1 ... sep valN]'.
+ * If this form is found, fill in val0 ... valN to fFourier.fPhase
+ * vector.
+ *
+ * @param fourier msr-file Fourier structure
+ * @param str string to be analyzed
+ * @param error flag needed to propagate a fatal error
+ *
+ * @return true if a phase value form is found, otherwise return false
+ */
+Bool_t PMsrHandler::ParseFourierPhaseValueVector(PMsrFourierStructure &fourier, const TString &str, Bool_t &error)
+{
+  Bool_t result = true;
+
+  TObjArray *tok = str.Tokenize(" ,;\t");
+  if (tok == 0) {
+    cerr << endl << ">> PMsrHandler::ParseFourierPhaseValueVector: **ERROR** couldn't tokenize Fourier phase line." << endl << endl;
+    return false;
+  }
+
+  // make sure there are enough tokens
+  if (tok->GetEntries() < 2) {
+    error = true;
+    return false;
+  }
+
+  // convert all acceptable tokens
+  TObjString *ostr=0;
+  TString sstr("");
+  for (Int_t i=1; i<tok->GetEntries(); i++) {
+    ostr = dynamic_cast<TObjString*>(tok->At(i));
+    sstr = ostr->GetString();
+    if (sstr.IsFloat()) {
+      fourier.fPhase.push_back(sstr.Atof());
+    } else {
+      result = false;
+      if (i>1) { // make sure that no 'phase val, parX' mixture is present
+        cerr << endl << ">> PMsrHandler::ParseFourierPhaseValueVector: **ERROR** in Fourier phase line.";
+        cerr << endl << ">>     Attempt to mix val, parX? This is currently not supported." << endl << endl;
+        error = true;
+      }
+      break;
+    }
+  }
+
+  // clean up
+  if (tok) {
+    delete tok;
+  }
+
+  return result;
+}
+
+//--------------------------------------------------------------------------
+// ParseFourierPhaseParVector (private)
+//--------------------------------------------------------------------------
+/**
+ * <p> examines if str has the form 'phase parX0 [sep parX1 ... sep parXN]'.
+ * If this form is found, fill in parX0 ... parXN to fFourier.fPhaseParamNo
+ * and furthermore fill fFourier.fPhase accordingly.
+ *
+ * @param fourier msr-file Fourier structure
+ * @param str string to be analyzed
+ * @param error flag needed to propagate a fatal error
+ *
+ * @return true if a phase parameter form is found, otherwise return false
+ */
+Bool_t PMsrHandler::ParseFourierPhaseParVector(PMsrFourierStructure &fourier, const TString &str, Bool_t &error)
+{
+  Bool_t result = true;
+
+  TObjArray *tok = str.Tokenize(" ,;\t");
+  if (tok == 0) {
+    cerr << endl << ">> PMsrHandler::ParseFourierPhaseParVector: **ERROR** couldn't tokenize Fourier phase line." << endl << endl;
+    return false;
+  }
+
+  // make sure there are enough tokens
+  if (tok->GetEntries() < 2) {
+    error = true;
+    return false;
+  }
+
+  // check that all tokens start with par
+  TString sstr;
+  for (Int_t i=1; i<tok->GetEntries(); i++) {
+    TObjString *ostr = dynamic_cast<TObjString*>(tok->At(i));
+    sstr = ostr->GetString();
+    if (!sstr.BeginsWith("par")) {
+      cerr << ">> PMsrHandler::ParseFourierPhaseParVector: **ERROR** found unhandable token '" << sstr << "'" << endl;
+      error = true;
+      result = false;
+      break;
+    }
+
+    // rule out par(X, offset, #Param) syntax
+    if (sstr.BeginsWith("par(")) {
+      result = false;
+      break;
+    }
+  }
+
+  // check that token has the form parX, where X is an int
+  if (result != false) {
+    for (Int_t i=1; i<tok->GetEntries(); i++) {
+      TObjString *ostr = dynamic_cast<TObjString*>(tok->At(i));
+      sstr = ostr->GetString();
+      sstr.Remove(0, 3); // remove 'par' part. Rest should be an integer
+      if (sstr.IsDigit()) {
+        fourier.fPhaseParamNo.push_back(sstr.Atoi());
+      } else {
+        cerr << ">> PMsrHandler::ParseFourierPhaseParVector: **ERROR** found token '" << ostr->GetString() << "' which is not parX with X an integer." << endl;
+        fourier.fPhaseParamNo.clear();
+        error = true;
+        break;
+      }
+    }
+  }
+
+  if (fourier.fPhaseParamNo.size() == tok->GetEntries()-1) { // everything as expected
+    result = true;
+  } else {
+    result = false;
+  }
+
+  // clean up
+  if (tok) {
+    delete tok;
+  }
+
+  return result;
+}
+
+//--------------------------------------------------------------------------
+// ParseFourierPhaseParIterVector (private)
+//--------------------------------------------------------------------------
+/**
+ * <p> examines if str has the form 'phase par(X0, offset, #params)'.
+ * If this form is found, fill in parX0 ... parXN to fFourier.fPhaseParamNo
+ * and furthermore fill fFourier.fPhase accordingly.
+ *
+ * @param fourier msr-file Fourier structure
+ * @param str string to be analyzed
+ * @param error flag needed to propagate a fatal error
+ *
+ * @return true if a phase parameter iterator form is found, otherwise return false
+ */
+Bool_t PMsrHandler::ParseFourierPhaseParIterVector(PMsrFourierStructure &fourier, const TString &str, Bool_t &error)
+{
+  TString wstr = str;
+
+  // remove 'phase' from string
+  wstr.Remove(0, 5);
+  wstr = wstr.Strip(TString::kLeading, ' ');
+
+  // remove 'par(' from string if present, otherwise and error is issued
+  if (!wstr.BeginsWith("par(")) {
+    cout << ">> PMsrHandler::ParseFourierPhaseParIterVector: **ERROR** token should start with 'par(', found: '" << wstr << "' -> ERROR" << endl;
+    error = true;
+    return false;
+  }
+  wstr.Remove(0, 4);
+
+  // remove trailing white spaces
+  wstr = wstr.Strip(TString::kTrailing, ' ');
+
+  // remove last ')'
+  Ssiz_t idx=wstr.Last(')');
+  wstr.Remove(idx, wstr.Length()-idx);
+
+  // tokenize rest which should have the form 'X0, offset, #Param'
+  TObjArray *tok = wstr.Tokenize(",;");
+  if (tok == 0) {
+    cerr << ">> PMsrHandler::ParseFourierPhaseParIterVector: **ERROR** tokenize failed." << endl;
+    error = true;
+    return false;
+  }
+
+  // check for proper number of expected elements
+  if (tok->GetEntries() != 3) {
+    cerr << ">> PMsrHandler::ParseFourierPhaseParIterVector: **ERROR** wrong syntax for the expected par(X0, offset, #param)." << endl;
+    error = true;
+    delete tok;
+    return false;
+  }
+
+  Int_t x0, offset, noParam;
+
+  // get X0
+  TObjString *ostr = dynamic_cast<TObjString*>(tok->At(0));
+  wstr = ostr->GetString();
+  if (wstr.IsDigit()) {
+    x0 = wstr.Atoi();
+  } else {
+    cerr << ">> PMsrHandler::ParseFourierPhaseParIterVector: **ERROR** X0='" << wstr << "' is not an integer." << endl;
+    error = true;
+    delete tok;
+    return false;
+  }
+
+  // get offset
+  ostr = dynamic_cast<TObjString*>(tok->At(1));
+  wstr = ostr->GetString();
+  if (wstr.IsDigit()) {
+    offset = wstr.Atoi();
+  } else {
+    cerr << ">> PMsrHandler::ParseFourierPhaseParIterVector: **ERROR** offset='" << wstr << "' is not an integer." << endl;
+    error = true;
+    delete tok;
+    return false;
+  }
+
+  // get noParam
+  ostr = dynamic_cast<TObjString*>(tok->At(2));
+  wstr = ostr->GetString();
+  if (wstr.IsDigit()) {
+    noParam = wstr.Atoi();
+  } else {
+    cerr << ">> PMsrHandler::ParseFourierPhaseParIterVector: **ERROR** #Param='" << wstr << "' is not an integer." << endl;
+    error = true;
+    delete tok;
+    return false;
+  }
+
+  for (Int_t i=0; i<noParam; i++)
+    fourier.fPhaseParamNo.push_back(x0 + i*offset);
+
+  // clean up
+  if (tok) {
+    delete tok;
+  }
+
+  return true;
+}
+
 //--------------------------------------------------------------------------
 // HandleFourierEntry (private)
 //--------------------------------------------------------------------------
@@ -4011,39 +4288,59 @@ Bool_t PMsrHandler::HandleFourierEntry(PMsrLines &lines)
         }
       }
     } else if (iter->fLine.BeginsWith("phase", TString::kIgnoreCase)) { // phase
-      if (tokens->GetEntries() < 2) { // phase value is missing
+      if (tokens->GetEntries() < 2) { // phase value(s)/par(s) is(are) missing
         error = true;
         continue;
       } else {
-        ostr = dynamic_cast<TObjString*>(tokens->At(1));
-        str = ostr->GetString();
-        if (str.BeginsWith("par", TString::kIgnoreCase)) { // parameter value
-          if (fFourierOnly) {
-            cerr << endl << ">> PMsrHandler::HandleFourierEntry: **WARNING** Found phase parameter for Fourier only.";
-            cerr << endl << ">>      This is currently not supported. Will set the phase to 0." << endl;
-            fourier.fPhase = 0.0;
-          } else {
-            Int_t no = 0;
-            if (FilterNumber(str, "par", 0, no)) {
-              // check that the parameter is in range
-              if ((Int_t)fParam.size() < no) {
-                error = true;
-                continue;
-              }
-              // keep the parameter number
-              fourier.fPhaseParamNo = no;
-              // get parameter value
-              fourier.fPhase = fParam[no-1].fValue;
-            } else {
+        // allowed phase parameter patterns:
+        // (i)   phase val [sep val sep val ...] [# comment], val=double, sep=' ,;\t'
+        // (ii)  phase parX0 [sep parX1 sep parX2 ...] [# comment], val=double, sep=' ,;\t'
+        // (iii) phase par(X0 sep1 offset sep1 #param) [# comment], sep1= ',;'
+
+        // remove potential comment
+        TString wstr("");
+        RemoveComment(iter->fLine, wstr);
+
+        // check for 'phase val ...'
+        Bool_t result = ParseFourierPhaseValueVector(fourier, wstr, error);
+        if (error)
+          continue;
+
+        // check for 'phase parX0 ...' if not already val are found
+        if (!result) {
+          result = ParseFourierPhaseParVector(fourier, wstr, error);
+          if (error)
+            continue;
+        }
+
+        // check for 'phase par(X0, offset, #param)' if not already covered by the previous ones
+        if (!result) {
+          result = ParseFourierPhaseParIterVector(fourier, wstr, error);
+        }
+
+        if (!result || error) {
+          continue;
+        }
+
+        // if parameter vector is given: check that all parameters are within range
+        if (fourier.fPhaseParamNo.size() > 0) {
+          for (UInt_t i=0; i<fourier.fPhaseParamNo.size(); i++) {
+            if (fourier.fPhaseParamNo[i] > fParam.size()) {
+              cerr << ">> PMsrHandler::HandleFourierEntry: found Fourier parameter entry par" << fourier.fPhaseParamNo[i] << " > #Param = " << fParam.size() << endl;
               error = true;
+              --iter;
               continue;
             }
           }
-        } else if (str.IsFloat()) { // phase value
-          fourier.fPhase = str.Atof();
-        } else {
-          error = true;
-          continue;
+        }
+
+        // if parameter vector is given -> fill corresponding phase values
+        if (fourier.fPhaseParamNo.size() > 0) {
+          fourier.fPhase.clear();
+          UInt_t idx;
+          for (UInt_t i=0; i<fourier.fPhaseParamNo.size(); i++) {
+            fourier.fPhase.push_back(fParam[fourier.fPhaseParamNo[i]-1].fValue);
+          }
         }
       }
     } else if (iter->fLine.BeginsWith("range_for_phase_correction", TString::kIgnoreCase)) {
@@ -4142,7 +4439,11 @@ Bool_t PMsrHandler::HandleFourierEntry(PMsrLines &lines)
     cerr << endl << ">> [dc-corrected true | false]";
     cerr << endl << ">> [apodization none | weak | medium | strong]";
     cerr << endl << ">> [plot real | imag | real_and_imag | power | phase | phase_opt_real]";
-    cerr << endl << ">> [phase value]";
+    cerr << endl << ">> [phase valList | parList | parIterList [# comment]]";
+    cerr << endl << ">>     valList : val [sep val ... sep val]. sep=' ,;\\t'";
+    cerr << endl << ">>     parList : parX0 [sep parX1 ... sep parX1]";
+    cerr << endl << ">>     parIterList : par(X0,offset,#param), with X0=first parameter number";
+    cerr << endl << ">>                   offset=parameter offset, #param=number of phase parameters.";
     cerr << endl << ">> [range_for_phase_correction min max | all]";
     cerr << endl << ">> [range min max]";
     cerr << endl;
@@ -6220,6 +6521,56 @@ void PMsrHandler::MakeDetectorGroupingString(TString str, PIntVector &group, TSt
   } while (i<group.size());
 }
 
+//--------------------------------------------------------------------------
+// BeautifyFourierPhaseParameterString (private)
+//--------------------------------------------------------------------------
+/**
+ * <p>Returns the Fourier phase string if the phase is either of type
+ * phase parX0 sep ... sep parXn where sep = ',' or
+ * phase par(X0, offset, #param)
+ *
+ * @return Fourier phase parameter string if phase parameter(s) is(are) given, "??" otherwise
+ */
+TString PMsrHandler::BeautifyFourierPhaseParameterString()
+{
+  TString str("??");
+
+  if (fFourier.fPhaseParamNo.size() == 0)
+    return str;
+
+  if (fFourier.fPhaseParamNo.size() == 1) {
+    str = TString::Format("par%d", fFourier.fPhaseParamNo[0]);
+  } else if (fFourier.fPhaseParamNo.size() == 2) {
+    str = TString::Format("par%d, par%d", fFourier.fPhaseParamNo[0], fFourier.fPhaseParamNo[1]);
+  } else {
+    Bool_t phaseIter = true;
+
+    // first check if fPhaseParamNo vector can be compacted into par(X0, offset, #param) form
+    Int_t offset = fFourier.fPhaseParamNo[1] - fFourier.fPhaseParamNo[0];
+    for (Int_t i=2; i<fFourier.fPhaseParamNo.size(); i++) {
+      if (fFourier.fPhaseParamNo[i]-fFourier.fPhaseParamNo[i-1] != offset) {
+        phaseIter = false;
+        break;
+      }
+    }
+
+    if (phaseIter) {
+      str = TString::Format("par(%d, %d, %d)", fFourier.fPhaseParamNo[0], offset, fFourier.fPhaseParamNo.size());
+    } else {
+      str = TString("");
+      for (Int_t i=0; i<fFourier.fPhaseParamNo.size()-1; i++) {
+        str += "par";
+        str += fFourier.fPhaseParamNo[i];
+        str += ", ";
+      }
+      str += "par";
+      str += fFourier.fPhaseParamNo[fFourier.fPhaseParamNo.size()-1];
+    }
+  }
+
+  return str;
+}
+
 //--------------------------------------------------------------------------
 // CheckLegacyLifetimecorrection (private)
 //--------------------------------------------------------------------------
diff --git a/src/classes/PMusrCanvas.cpp b/src/classes/PMusrCanvas.cpp
index dfd35246..ebbe5bea 100644
--- a/src/classes/PMusrCanvas.cpp
+++ b/src/classes/PMusrCanvas.cpp
@@ -152,7 +152,6 @@ PMusrCanvas::PMusrCanvas()
   InitFourier();
   InitAverage();
 
-  fCurrentFourierPhase = fFourier.fPhaseIncrement;
   fCurrentFourierPhaseText = 0;
 
   fRRFText = 0;
@@ -205,7 +204,6 @@ PMusrCanvas::PMusrCanvas(const Int_t number, const Char_t* title,
   CreateStyle();
   InitMusrCanvas(title, wtopx, wtopy, ww, wh);
 
-  fCurrentFourierPhase = 0.0;
   fCurrentFourierPhaseText = 0;
 
   fRRFText = 0;
@@ -262,7 +260,6 @@ PMusrCanvas::PMusrCanvas(const Int_t number, const Char_t* title,
   CreateStyle();
   InitMusrCanvas(title, wtopx, wtopy, ww, wh);
 
-  fCurrentFourierPhase = 0.0;
   fCurrentFourierPhaseText = 0;
 
   fRRFText = 0;
@@ -322,10 +319,6 @@ PMusrCanvas::~PMusrCanvas()
       CleanupDataSet(fNonMusrData[i]);
     fNonMusrData.clear();
   }
-  if (fCurrentFourierPhaseText) {
-    delete fCurrentFourierPhaseText;
-    fCurrentFourierPhaseText = 0;
-  }
   if (fMultiGraphLegend) {
     fMultiGraphLegend->Clear();
     delete fMultiGraphLegend;
@@ -394,9 +387,8 @@ void PMusrCanvas::SetMsrHandler(PMsrHandler *msrHandler)
     if (fMsrHandler->GetMsrFourierList()->fPlotTag != FOURIER_PLOT_NOT_GIVEN) {
       fFourier.fPlotTag = fMsrHandler->GetMsrFourierList()->fPlotTag;
     }
-    if (fMsrHandler->GetMsrFourierList()->fPhase != -999.0) {
-      fFourier.fPhase = fMsrHandler->GetMsrFourierList()->fPhase;
-    }
+    fFourier.fPhase = fMsrHandler->GetMsrFourierList()->fPhase;
+
     if ((fMsrHandler->GetMsrFourierList()->fRangeForPhaseCorrection[0] != -1.0) &&
         (fMsrHandler->GetMsrFourierList()->fRangeForPhaseCorrection[1] != -1.0)) {
       fFourier.fRangeForPhaseCorrection[0] = fMsrHandler->GetMsrFourierList()->fRangeForPhaseCorrection[0];
@@ -2312,7 +2304,8 @@ void PMusrCanvas::InitFourier()
   fFourier.fFourierPower = 0;                      // no zero padding
   fFourier.fApodization = FOURIER_APOD_NONE;       // no apodization
   fFourier.fPlotTag = FOURIER_PLOT_REAL_AND_IMAG;  // initial plot tag, plot real and imaginary part
-  fFourier.fPhase = 0.0;                           // fourier phase 0°
+  fFourier.fPhaseParamNo.clear();
+  fFourier.fPhase.clear();
   for (UInt_t i=0; i<2; i++) {
     fFourier.fRangeForPhaseCorrection[i] = -1.0;   // frequency range for phase correction, default: {-1, -1} = NOT GIVEN
     fFourier.fPlotRange[i] = -1.0;                 // fourier plot range, default: {-1, -1} = NOT GIVEN
@@ -3464,13 +3457,20 @@ void PMusrCanvas::HandleFourier()
     }
 
     // apply global phase if present
-    if (fFourier.fPhase != 0.0) {
-      const double cp = TMath::Cos(fFourier.fPhase/180.0*TMath::Pi());
-      const double sp = TMath::Sin(fFourier.fPhase/180.0*TMath::Pi());
+    if (fFourier.fPhase.size() != 0.0) {
+      double cp;
+      double sp;
 
       fCurrentFourierPhase = fFourier.fPhase;
 
       for (UInt_t i=0; i<fData.size(); i++) { // loop over all data sets
+        if (fFourier.fPhase.size() == 1) {
+          cp = TMath::Cos(fFourier.fPhase[0]/180.0*TMath::Pi());
+          sp = TMath::Sin(fFourier.fPhase[0]/180.0*TMath::Pi());
+        } else {
+          cp = TMath::Cos(fFourier.fPhase[i]/180.0*TMath::Pi());
+          sp = TMath::Sin(fFourier.fPhase[i]/180.0*TMath::Pi());
+        }
         if ((fData[i].dataFourierRe != 0) && (fData[i].dataFourierIm != 0)) {
           for (Int_t j=0; j<fData[i].dataFourierRe->GetNbinsX(); j++) { // loop over a fourier data set
             // calculate new fourier data set value
@@ -3567,16 +3567,23 @@ void PMusrCanvas::HandleDifferenceFourier()
       fData[i].diffFourierTag = 1; // d-f
     }
 
-    // apply global phase
-    if (fFourier.fPhase != 0.0) {
+    // apply phase
+    if (fFourier.fPhase.size() != 0.0) {
       double re, im;
-      const double cp = TMath::Cos(fFourier.fPhase/180.0*TMath::Pi());
-      const double sp = TMath::Sin(fFourier.fPhase/180.0*TMath::Pi());
+      double cp;
+      double sp;
 
       fCurrentFourierPhase = fFourier.fPhase;
 
       for (UInt_t i=0; i<fData.size(); i++) { // loop over all data sets
         if ((fData[i].diffFourierRe != 0) && (fData[i].diffFourierIm != 0)) {
+          if (fFourier.fPhase.size() == 1) {
+            cp = TMath::Cos(fFourier.fPhase[0]/180.0*TMath::Pi());
+            sp = TMath::Sin(fFourier.fPhase[0]/180.0*TMath::Pi());
+          } else {
+            cp = TMath::Cos(fFourier.fPhase[i]/180.0*TMath::Pi());
+            sp = TMath::Sin(fFourier.fPhase[i]/180.0*TMath::Pi());
+          }
           for (Int_t j=0; j<fData[i].diffFourierRe->GetNbinsX(); j++) { // loop over a fourier data set
             // calculate new fourier data set value
             re = fData[i].diffFourierRe->GetBinContent(j) * cp + fData[i].diffFourierIm->GetBinContent(j) * sp;
@@ -6040,7 +6047,10 @@ void PMusrCanvas::PlotFourierPhaseValue(Bool_t unzoom)
 
   // plot Fourier phase
   str = TString("phase = ");
-  str += fCurrentFourierPhase;
+  str += fCurrentFourierPhase[0];
+  if (fFourier.fPhase.size() > 1) { // if more than one phase is present, do NOT plot phase info
+    str = TString("");
+  }
   x = 0.7;
   y = 0.85;
   fCurrentFourierPhaseText = new TLatex();
@@ -6292,7 +6302,8 @@ void PMusrCanvas::IncrementFourierPhase()
   const double cp = TMath::Cos(fFourier.fPhaseIncrement/180.0*TMath::Pi());
   const double sp = TMath::Sin(fFourier.fPhaseIncrement/180.0*TMath::Pi());
 
-  fCurrentFourierPhase += fFourier.fPhaseIncrement;
+  for (UInt_t i=0; i<fCurrentFourierPhase.size(); i++)
+    fCurrentFourierPhase[i] += fFourier.fPhaseIncrement;
   PlotFourierPhaseValue();
 
   for (UInt_t i=0; i<fData.size(); i++) { // loop over all data sets
@@ -6344,7 +6355,8 @@ void PMusrCanvas::DecrementFourierPhase()
   const double cp = TMath::Cos(fFourier.fPhaseIncrement/180.0*TMath::Pi());
   const double sp = TMath::Sin(fFourier.fPhaseIncrement/180.0*TMath::Pi());
 
-  fCurrentFourierPhase -= fFourier.fPhaseIncrement;
+  for (UInt_t i=0; i<fCurrentFourierPhase.size(); i++)
+    fCurrentFourierPhase[i] -= fFourier.fPhaseIncrement;
   PlotFourierPhaseValue();
 
   for (UInt_t i=0; i<fData.size(); i++) { // loop over all data sets
diff --git a/src/classes/PStartupHandler.cpp b/src/classes/PStartupHandler.cpp
index 91b291a9..2c1c4577 100644
--- a/src/classes/PStartupHandler.cpp
+++ b/src/classes/PStartupHandler.cpp
@@ -192,7 +192,6 @@ void PStartupHandler::OnStartDocument()
   fFourierDefaults.fFourierPower = 0;
   fFourierDefaults.fApodization = FOURIER_APOD_NONE;
   fFourierDefaults.fPlotTag = FOURIER_PLOT_REAL_AND_IMAG;
-  fFourierDefaults.fPhase = 0.0;
   fFourierDefaults.fRangeForPhaseCorrection[0] = -1.0;
   fFourierDefaults.fRangeForPhaseCorrection[1] = -1.0;
   fFourierDefaults.fPlotRange[0] = -1.0;
@@ -412,7 +411,7 @@ void PStartupHandler::OnCharacters(const Char_t *str)
     case ePhase:
       tstr = TString(str);
       if (tstr.IsFloat()) {
-        fFourierDefaults.fPhase = tstr.Atof();
+        fFourierDefaults.fPhase.push_back(tstr.Atof());
       } else {
         cerr << endl << "PStartupHandler **WARNING** '" << str << "' is not a valid phase, will ignore it.";
         cerr << endl;
diff --git a/src/include/PMsrHandler.h b/src/include/PMsrHandler.h
index 958f2ee4..0b346f6e 100644
--- a/src/include/PMsrHandler.h
+++ b/src/include/PMsrHandler.h
@@ -146,6 +146,10 @@ class PMsrHandler
     virtual void FillParameterInUse(PMsrLines &theory, PMsrLines &funcs, PMsrLines &run);
 
     virtual void InitFourierParameterStructure(PMsrFourierStructure &fourier);
+    virtual void RemoveComment(const TString &str, TString &truncStr);
+    virtual Bool_t ParseFourierPhaseValueVector(PMsrFourierStructure &fourier, const TString &str, Bool_t &error);
+    virtual Bool_t ParseFourierPhaseParVector(PMsrFourierStructure &fourier, const TString &str, Bool_t &error);
+    virtual Bool_t ParseFourierPhaseParIterVector(PMsrFourierStructure &fourier, const TString &str, Bool_t &error);
 
     virtual Bool_t FilterNumber(TString str, const Char_t *filter, Int_t offset, Int_t &no);
 
@@ -153,6 +157,7 @@ class PMsrHandler
     virtual UInt_t LastSignificant(Double_t dval, UInt_t precLimit=6);
 
     virtual void MakeDetectorGroupingString(TString str, PIntVector &group, TString &result, Bool_t includeDetector = true);
+    virtual TString BeautifyFourierPhaseParameterString();
 
     virtual void CheckLegacyLifetimecorrection();
 };
diff --git a/src/include/PMusr.h b/src/include/PMusr.h
index 11884323..da206f0e 100644
--- a/src/include/PMusr.h
+++ b/src/include/PMusr.h
@@ -737,8 +737,8 @@ typedef struct {
   Int_t  fFourierPower;        ///< i.e. zero padding up to 2^fFourierPower, default = 0 which means NO zero padding
   Int_t  fApodization;         ///< tag indicating the kind of apodization wished, 0=no appodization (default), 1=weak, 2=medium, 3=strong (for details see the docu)
   Int_t  fPlotTag;             ///< tag used for initial plot. 0=real, 1=imaginary, 2=real & imaginary (default), 3=power, 4=phase
-  Int_t  fPhaseParamNo;        ///< parameter number if used instead of a phase value
-  Double_t fPhase;             ///< phase
+  PIntVector  fPhaseParamNo;   ///< parameter number(s) if used instead of a phase value
+  PDoubleVector fPhase;        ///< phase(s)
   Double_t fRangeForPhaseCorrection[2]; ///< field/frequency range for automatic phase correction
   Double_t fPlotRange[2];      ///< field/frequency plot range
   Double_t fPhaseIncrement;    ///< phase increment for manual phase optimization
diff --git a/src/include/PMusrCanvas.h b/src/include/PMusrCanvas.h
index a3b1cffa..a079c611 100644
--- a/src/include/PMusrCanvas.h
+++ b/src/include/PMusrCanvas.h
@@ -252,7 +252,7 @@ class PMusrCanvas : public TObject, public TQObject
     Bool_t fXRangePresent, fYRangePresent; ///< flag indicating if x-/y-range is present
     Double_t fXmin, fXmax, fYmin, fYmax;   ///< data/theory frame range
 
-    Double_t fCurrentFourierPhase;    ///< holds the current Fourier phase
+    PDoubleVector fCurrentFourierPhase; ///< holds the current Fourier phase(s)
     TLatex *fCurrentFourierPhaseText; ///< used in Re/Im Fourier to show the current phase in the pad
     TString *fRRFText;      ///< RRF information
     TLatex  *fRRFLatexText; ///< used to display RRF info

From 49055d447b58cd83c4c530c2456ae3ff4bf3cf17 Mon Sep 17 00:00:00 2001
From: Andreas Suter <andreas.suter@psi.ch>
Date: Mon, 15 Oct 2018 17:06:59 +0200
Subject: [PATCH 3/4] added new Fourier phase feature to this example.

---
 doc/examples/test-histo-HAL9500.msr | 159 ++++++++++++++--------------
 1 file changed, 80 insertions(+), 79 deletions(-)

diff --git a/doc/examples/test-histo-HAL9500.msr b/doc/examples/test-histo-HAL9500.msr
index 86451794..bb612930 100644
--- a/doc/examples/test-histo-HAL9500.msr
+++ b/doc/examples/test-histo-HAL9500.msr
@@ -1,107 +1,107 @@
-153
+MnSi, FLC68.2, 50 K                                           
 ###############################################################
 FITPARAMETER
 #      Nr. Name       Value     Step      Pos_Error Boundaries   
-        1 Rate_1      1.6687    0.0083      none        
-        2 Field_1     73089.883 0.089       none        
-        3 Rate_2      1.968     0.031       none        
+        1 Rate_1      1.6687    0.0086      none        
+        2 Field_1     73089.883 0.090       none        
+        3 Rate_2      1.968     0.032       none        
         4 Field_2     72289.02  0.24        none        
         
-        5 Asym_1      0.2949    0.0027      none        
-        6 Frc_1       0.7316    0.0052      none        
+        5 Asym_1      0.2949    0.0030      none        
+        6 Frc_1       0.7316    0.0059      none        
         7 Phase_1     55.61     0.52        none        
-        8 N0_1        940.35    0.44        none        
-        9 Bkg_1       1.523     0.052       none        
+        8 N0_1        940.35    0.54        none        
+        9 Bkg_1       1.523     0.064       none        
 
-       10 Asym_2      0.2960    0.0026      none        
-       11 Frc_2       0.7475    0.0051      none        
+       10 Asym_2      0.2960    0.0030      none        
+       11 Frc_2       0.7475    0.0059      none        
        12 Phase_2     30.77     0.50        none        
-       13 N0_2        961.49    0.45        none        
-       14 Bkg_2       1.928     0.053       none        
+       13 N0_2        961.49    0.55        none        
+       14 Bkg_2       1.928     0.065       none        
 
-       15 Asym_3      0.3002    0.0026      none        
-       16 Frc_3       0.7462    0.0050      none        
+       15 Asym_3      0.3002    0.0029      none        
+       16 Frc_3       0.7462    0.0056      none        
        17 Phase_3     18.03     0.48        none        
-       18 N0_3        1024.28   0.46        none        
-       19 Bkg_3       1.919     0.055       none        
+       18 N0_3        1024.28   0.57        none        
+       19 Bkg_3       1.919     0.067       none        
 
-       20 Asym_4      0.3088    0.0026      none        
-       21 Frc_4       0.7333    0.0048      none        
+       20 Asym_4      0.3088    0.0029      none        
+       21 Frc_4       0.7333    0.0054      none        
        22 Phase_4     336.94    0.47        none        
-       23 N0_4        1029.36   0.46        none        
-       24 Bkg_4       1.863     0.055       none        
+       23 N0_4        1029.36   0.57        none        
+       24 Bkg_4       1.863     0.067       none        
 
-       25 Asym_5      0.3094    0.0026      none        
-       26 Frc_5       0.7416    0.0049      none        
+       25 Asym_5      0.3094    0.0029      none        
+       26 Frc_5       0.7416    0.0055      none        
        27 Phase_5     280.32    0.48        none        
-       28 N0_5        1002.69   0.46        none        
-       29 Bkg_5       1.979     0.054       none        
+       28 N0_5        1002.69   0.56        none        
+       29 Bkg_5       1.979     0.067       none        
 
-       30 Asym_6      0.3153    0.0028      none        
-       31 Frc_6       0.7403    0.0051      none        
-       32 Phase_6     211.07    0.50        none        
-       33 N0_6        853.43    0.42        none        
-       34 Bkg_6       1.656     0.050       none        
+       30 Asym_6      0.3153    0.0032      none        
+       31 Frc_6       0.7403    0.0058      none        
+       32 Phase_6     211.07    0.51        none        
+       33 N0_6        853.43    0.52        none        
+       34 Bkg_6       1.656     0.061       none        
 
-       35 Asym_7      0.3118    0.0028      none        
-       36 Frc_7       0.7378    0.0052      none        
+       35 Asym_7      0.3118    0.0032      none        
+       36 Frc_7       0.7378    0.0059      none        
        37 Phase_7     161.74    0.51        none        
-       38 N0_7        858.76    0.42        none        
-       39 Bkg_7       1.594     0.050       none        
+       38 N0_7        858.76    0.52        none        
+       39 Bkg_7       1.594     0.061       none        
 
-       40 Asym_8      0.2985    0.0028      none        
-       41 Frc_8       0.7373    0.0053      none        
-       42 Phase_8     133.70    0.53        none        
-       43 N0_8        871.20    0.42        none        
-       44 Bkg_8       1.746     0.051       none        
+       40 Asym_8      0.2985    0.0031      none        
+       41 Frc_8       0.7373    0.0061      none        
+       42 Phase_8     133.69    0.53        none        
+       43 N0_8        871.20    0.52        none        
+       44 Bkg_8       1.746     0.062       none        
 
-       45 Asym_9      0.2874    0.0024      none        
-       46 Frc_9       0.7341    0.0048      none        
+       45 Asym_9      0.2874    0.0027      none        
+       46 Frc_9       0.7340    0.0054      none        
        47 Phase_9     158.63    0.47        none        
-       48 N0_9        1184.29   0.50        none        
-       49 Bkg_9       2.542     0.060       none        
+       48 N0_9        1184.29   0.61        none        
+       49 Bkg_9       2.542     0.073       none        
 
-       50 Asym_10     0.2846    0.0026      none        
-       51 Frc_10      0.7453    0.0053      none        
-       52 Phase_10    128.05    0.49        none        
-       53 N0_10       1193.66   0.50        none        
-       54 Bkg_10      2.394     0.060       none        
+       50 Asym_10     0.2846    0.0027      none        
+       51 Frc_10      0.7453    0.0055      none        
+       52 Phase_10    128.05    0.47        none        
+       53 N0_10       1193.66   0.61        none        
+       54 Bkg_10      2.394     0.073       none        
 
-       55 Asym_11     0.2876   0.0024      none        
-       56 Frc_11      0.7463    0.0049      none        
-       57 Phase_11    102.57   0.46        none        
-       58 N0_11       1280.00   0.52        none        
-       59 Bkg_11      2.730     0.061       none        
+       55 Asym_11     0.2877    0.0026      none        
+       56 Frc_11      0.7463    0.0053      none        
+       57 Phase_11    102.43    0.45        none        
+       58 N0_11       1280.00   0.63        none        
+       59 Bkg_11      2.730     0.075       none        
 
-       60 Asym_12     0.2919    0.0022      none        
-       61 Frc_12      0.7405    0.0045      none        
-       62 Phase_12    42.97     0.44        none        
-       63 N0_12       1383.96   0.54        none        
-       64 Bkg_12      2.807     0.064       none        
+       60 Asym_12     0.2919    0.0025      none        
+       61 Frc_12      0.7405    0.0050      none        
+       62 Phase_12    42.97     0.43        none        
+       63 N0_12       1383.96   0.66        none        
+       64 Bkg_12      2.807     0.078       none        
 
-       65 Asym_13     0.2903    0.0021      none        
-       66 Frc_13      0.7494    0.0044      none        
+       65 Asym_13     0.2903    0.0025      none        
+       66 Frc_13      0.7494    0.0050      none        
        67 Phase_13    350.74    0.43        none        
-       68 N0_13       1393.01   0.55        none        
-       69 Bkg_13      2.738     0.064       none        
+       68 N0_13       1393.01   0.66        none        
+       69 Bkg_13      2.738     0.078       none        
 
-       70 Asym_14     0.2968    0.0022      none        
-       71 Frc_14      0.7327    0.0045      none        
+       70 Asym_14     0.2968    0.0025      none        
+       71 Frc_14      0.7327    0.0049      none        
        72 Phase_14    288.56    0.43        none        
-       73 N0_14       1374.46   0.54        none        
-       74 Bkg_14      2.768     0.064       none        
+       73 N0_14       1374.46   0.66        none        
+       74 Bkg_14      2.768     0.078       none        
 
-       75 Asym_15     0.2799    0.0021      none        
-       76 Frc_15      0.7427    0.0044      none        
-       77 Phase_15    282.56    0.47        none        
-       78 N0_15       1365.97   0.54        none        
-       79 Bkg_15      2.809     0.063       none        
+       75 Asym_15     0.2799    0.0025      none        
+       76 Frc_15      0.7427    0.0052      none        
+       77 Phase_15    282.56    0.45        none        
+       78 N0_15       1365.97   0.65        none        
+       79 Bkg_15      2.809     0.078       none        
 
-       80 Asym_16     0.2771    0.0023      none        
-       81 Frc_16      0.7344    0.0048      none        
-       82 Phase_16    212.46    0.47        none        
-       83 N0_16       1256.93   0.52        none        
-       84 Bkg_16      2.458     0.062       none        
+       80 Asym_16     0.2771    0.0026      none        
+       81 Frc_16      0.7344    0.0055      none        
+       82 Phase_16    212.46    0.48        none        
+       83 N0_16       1256.94   0.63        none        
+       84 Bkg_16      2.458     0.074       none        
 
 ###############################################################
 THEORY
@@ -265,17 +265,18 @@ SAVE
 ###############################################################
 PLOT 0   (single histo plot)
 lifetimecorrection
-runs    1 11   
+runs     1   2   3   4   5   6   7   8   9   10  11  12  13  14  15  16  
 range    0   9.07   -0.5   0.5
 
 ###############################################################
 FOURIER
-units            Tesla   # units either 'Gauss', 'MHz', or 'Mc/s'
+units            Tesla   # units either 'Gauss', 'Tesla', 'MHz', or 'Mc/s'
 fourier_power    12
 apodization      STRONG  # NONE, WEAK, MEDIUM, STRONG
-plot             POWER   # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE
+plot             REAL    # REAL, IMAG, REAL_AND_IMAG, POWER, PHASE, PHASE_OPT_REAL
+phase            par(7, 5, 16)
 range            7.1    7.5
 
 ###############################################################
-STATISTIC --- 2014-12-03 15:42:56
+STATISTIC --- 2018-10-15 15:55:36
   maxLH = 1286508.7, NDF = 1246064, maxLH/NDF = 1.032458

From 6ecd6954ce9499e2d73de3e7e852511092f859ae Mon Sep 17 00:00:00 2001
From: Andreas Suter <andreas.suter@psi.ch>
Date: Tue, 16 Oct 2018 08:42:49 +0200
Subject: [PATCH 4/4] update of docu

---
 doc/html/_sources/user-manual.txt |  48 +++++++++++++++++++++++++++---
 doc/html/acknowledgement.html     |   2 +-
 doc/html/any2many.html            |   2 +-
 doc/html/bugtracking.html         |   2 +-
 doc/html/cite.html                |   2 +-
 doc/html/genindex.html            |   2 +-
 doc/html/index.html               |   2 +-
 doc/html/msr2data.html            |   2 +-
 doc/html/mupp.html                |   2 +-
 doc/html/musr-root.html           |   2 +-
 doc/html/musredit.html            |   2 +-
 doc/html/objects.inv              | Bin 1902 -> 1904 bytes
 doc/html/search.html              |   2 +-
 doc/html/searchindex.js           |   2 +-
 doc/html/setup-dks.html           |   2 +-
 doc/html/setup-standard.html      |   2 +-
 doc/html/tutorial.html            |   2 +-
 doc/html/user-libs.html           |   2 +-
 doc/html/user-manual.html         |  43 ++++++++++++++++++++++----
 19 files changed, 98 insertions(+), 25 deletions(-)

diff --git a/doc/html/_sources/user-manual.txt b/doc/html/_sources/user-manual.txt
index 4fd2b4d2..7b704395 100644
--- a/doc/html/_sources/user-manual.txt
+++ b/doc/html/_sources/user-manual.txt
@@ -1486,8 +1486,49 @@ The block starts with the *FOURIER* keyword and may contain the following entrie
 .. _msr-fourier-block-phase:
 
 **phase**
-  The initial phase of the input data is given here in degrees. Optionally the phase parameter from the :ref:`FITPARAMETER block <msr-fitparameter-block>` can be given, 
-  *e.g.* par3, which would take the value of parameter number 3. 
+  If a real Fourier shall be plotted, it is necessary to adopt the phases of the different detectors. The number of potentially provided phases can be either **one**, which means that this phase will be applied to *all* Fourier spectra, 
+  or the number of phases have to correspond to the number of runs in the plot block.
+  
+  Currently there are three options:
+  
+  #. The phases for each run/detector are given explicitly, *i.e.* 
+  
+     .. code-block:: bash
+     
+        phase val0 sep val1 sep ... sep valN
+        
+     where ``val0``, ``val1``, etc. are explicitly given phases (*i.e.* doubles), and ``sep`` is one of the following allowed separators: ``space``, ``,``, ``;``, or ``tab``.
+     For example
+     
+     .. code-block:: bash
+     
+        phase   -3.2, 175.9
+        
+  #. The phases for each run/detector are given as phase parameter from the :ref:`FITPARAMETER block <msr-fitparameter-block>`, *e.g.* par3, which would 
+     take the value of parameter number 3. More explicitly
+     
+     .. code-block:: bash
+     
+        phase parX0 sep parX1 sep ... sep parXN
+        
+     where the same rules applies as for explicit phase values. An example could look like this
+     
+     .. code-block:: bash
+     
+        phase par7, par12, par17, par22, par27, par32, par37, par42, par47, par52, par57, par62, par67, par72, par77, par82
+  
+  #. Often the phases in the parameter block follow a clear list structure. This allows to write the Fourier phase parameters in a more compact form
+  
+     .. code-block:: none
+     
+        phase par(X0, offset, #param)
+        
+     with ``X0`` the first phase parameter index, ``offset`` being the offset to the next phase parameter, and ``#param`` being the number of phase parameters to be used.
+     This means that the previous example can be compacted to
+     
+     .. code-block:: none
+     
+        phase par(7, 5, 16)
   
 .. index:: fourier-block-range_for_phase_correction
 .. _msr-fourier-block-range_for_phase_correction:
@@ -1511,8 +1552,7 @@ Altogether, a possible FOURIER block might look like that:
   fourier_power 12
   apodization NONE
   plot real_and_imag
-  phase 22.6   # par3
-  range_for_phase_correction all
+  phase par5, par8
   range 0.0 17.03
   
 .. index:: msr-plot-block
diff --git a/doc/html/acknowledgement.html b/doc/html/acknowledgement.html
index c820d718..74b21a92 100644
--- a/doc/html/acknowledgement.html
+++ b/doc/html/acknowledgement.html
@@ -113,7 +113,7 @@ extremely competent way to deal with his projects as well as to deal with the ch
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/any2many.html b/doc/html/any2many.html
index 020a38ea..b9d5dc88 100644
--- a/doc/html/any2many.html
+++ b/doc/html/any2many.html
@@ -107,7 +107,7 @@ For a detailed description see <a class="reference internal" href="user-manual.h
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/bugtracking.html b/doc/html/bugtracking.html
index fd6f2b1b..9dd1e50d 100644
--- a/doc/html/bugtracking.html
+++ b/doc/html/bugtracking.html
@@ -98,7 +98,7 @@ or send an e-mail to A. Suter at PSI.</p>
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/cite.html b/doc/html/cite.html
index d1359e1c..f3e6e87c 100644
--- a/doc/html/cite.html
+++ b/doc/html/cite.html
@@ -119,7 +119,7 @@
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/genindex.html b/doc/html/genindex.html
index 702efcc2..1ed12d1a 100644
--- a/doc/html/genindex.html
+++ b/doc/html/genindex.html
@@ -987,7 +987,7 @@
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/index.html b/doc/html/index.html
index 8cf5959f..2f57c436 100644
--- a/doc/html/index.html
+++ b/doc/html/index.html
@@ -185,7 +185,7 @@
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/msr2data.html b/doc/html/msr2data.html
index 8ffa1dac..fb11525d 100644
--- a/doc/html/msr2data.html
+++ b/doc/html/msr2data.html
@@ -439,7 +439,7 @@ fit serves as template for the second and so on. The template field stays empty
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/mupp.html b/doc/html/mupp.html
index cb9579e1..dcb675ab 100644
--- a/doc/html/mupp.html
+++ b/doc/html/mupp.html
@@ -257,7 +257,7 @@ SCRIPT COMMANDS:
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/musr-root.html b/doc/html/musr-root.html
index d1547866..b6c3b9a9 100644
--- a/doc/html/musr-root.html
+++ b/doc/html/musr-root.html
@@ -928,7 +928,7 @@ the entry has been added. The last token, <tt class="docutils literal"><span cla
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/musredit.html b/doc/html/musredit.html
index fc7e6388..a09cebc2 100644
--- a/doc/html/musredit.html
+++ b/doc/html/musredit.html
@@ -555,7 +555,7 @@ the corresponding fit parameter value, except the phases where the step will be
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/objects.inv b/doc/html/objects.inv
index 4ce8549a543624041223af9642aa28dfaf3b76ef..9b822ea5db96cba593b42fbd88be0b76756bd66a 100644
GIT binary patch
delta 1550
zcmV+p2J!js4)6|;sed+F0+o{~@V(a!pwZo+XIu&y@+C1g{1~$-j|qK8X2s~6xlQ8l
zNC%%=i3)3=>57&w3UpV6S<DNP;Y<hfZAv~?pocl2&t|;Ef@i4~F%M@6mv)=9e#h};
z&i<aXw}(w@n$4^Ru#mHDfsGd>`D#7X3WVj`1RN=m4{AZIB7fHiN;0D(VSj5SMqh@^
zvTa&9T2d<%C2i8zYNlC2BBe<?vnpX$1T2nM_$J`SpxfOnwjzxyODI9^M9fWPl1`Zs
z0nH37+hOxp2qdFb$_-Hw86%^mGf87%ER8^QVyw;ro9Tl}TNJvc3^GX`Vca=LhUNI$
zQ<YkpGMw~5KYx3v6-u%gA_1`6at*W1(sYLfBh|v<TS~tDI~=S@q#r8_e;v1WeKr(E
zbDl2<8D>es^s0p`u9dR89HS`?m&7g%3=l>MljL@3xin%5^Y5ix<|}chG;FThX!NjE
zX;AgT^^4$(BQ{`RJ2FzFSHKGe*oHZ0A=fleGT`YkSAR#&*GxV*61mPv8}7WYSinZW
z;vZ4^yaqxbvGpS0d|gNh@Rw@-B@>#5p3^%U6!`O22pbq!r5owo6r^1-!xA_`l*<>P
zmBif8NOtJxw`=yUe!^yw!{LSVz~k^_JKaL&4pk1An{t-KLh?r9R|RR$_cD^w`O0Aa
zp<gm4t$(m9&tU2oyx&V2C4FV`BQW5p<_4zVLd7^^JQS819_-8GoArUte}5zv4(9#1
zgUJgf*^zLdBNlK>!9`Al!eX<OhR<fVwiLtFMsjO0sb*=FPT!K7Ps5MoLCof4m~yai
zCvwn2*g3iHkAKMB1~5v&ni~sA`iP}Yj;c;bX@3q=02r(k9kEUe=rUwFJm5Mg--syU
z8tY>pY=L-US_YDu(w2viZMkO1qGn|*PmGtLl8*T+r;}kp2P7G)$SxQr`#gm5N;{Jo
zR0NqVeN5axjo&^Zcugy#*s1wwY+26?q`+8AcbL_1l^;})C1o_?wjhEy;+cDlG8wo?
zg?~eqEPN!pTo@x^5NbA7Ljw`@8P{(~9~o>J1ghq+H?W?SI61rO{^86zGx$K4Nqoc-
z7N|eFkAPwtg9fd&rZVxG`CVljjtzs-y86n=w}0qUcR*Z2a(0D}xlfLrFqyGBpYj)_
z@EDgZA1Z_TD2F=ae%X5!8Xea}*xksX?K_2sER(BC7+d*zfM>N>cpp~)KPm8UU~91h
z%A2JqZv~EN+;9_Uk(P0aIk0T}if+P5LcRsfX{>_hqmx_&Fist%cUfxoj8X?&pD?em
ztqw)LBIU0p%Q1es9(8(8!;P8DVl{;->MwHt*t=>!ZYW?i_NNcVPaE7oLGvoZCX=}C
zb-V4So8hY}`<1mWliCDTe`9RuJMybp3om|ftmk0c-4LlyQXM)HG%^Lr>75}H&6A7s
zeOaxe)1(K3yB+y==PhPd38WJ^kv^L361^jIxhdr9;96|ov-jsM$!D;UFPtWslGHV_
zKB`Xz4K6p3h27P1Tlz<kZX^ic8krA8#r4fzBD}oVO<>ys6nj^dldc6CNl|C}e;W3&
z3OBvEboUkCwqsN>YO8D6pkqy3DE;ip{z7~`d`+S2D-GOqB6AFFVtu4jqb<Rf9vCT%
zItq*4dGt5Yr3Xm*C`pqL20njt{8X;NE`#RmSVY{4#CIalI{Ge<(r|SRo1vY54QSQe
zmrdrr++wRthIF%DH?r;6RTcH5y6>|mm~_0R#_Yu@rhwJd5S*XWY~{qJ=9VkE|4)EJ
z=hYLL*8LOXK;Uk4&NP$4nv<BtuSu#FTzdp_Et}@-I{h$!i-y)v)Omk+l7lQ&q4-+!
zz1owH*MrlDb7uHSOwHtsPaw5SoW`VBfa5cGMGCW2?hf6MdeyRTyjAz6Dj9n_TB89a
z%$&eF&0&*GCyr`7R&<+33*Me4a3}al=M-Idk0<?AZTt>4@jKu(%qlhPZ=9MfPuOlX
zTb-~~Iy!9%c*A>j2B;z$Y5t|Tq+`{4>2Y%Fd~`Ireb=EP!LJoe`XrJ60Fs*g=W0mp
AIsgCw

delta 1548
zcmV+n2J`vw4(<++see|BpmH(=zW2HTG`bt~j7uRyz9hzmA7eJ<F`@6stQdVWw@LgR
z>ELrKQQ-k-x}xQa0^L<%7W0B+IMcy=o05+e=wS}%vl(x(;906g%)?p2rQIg2-*J4I
zv%e?p?P1fJW;3e+EaYrkVB<wezFH5p0%7?!0Y^&YgIW-)$bU70lFaBx*xy=-(U&2!
zY@1e&medMGNt^VwnrW7hNNLi}tV);_0gK}mz6rQ7=yo@Ytw`g_5=xLe5pz?Sq*G=@
zKr;i&cHI0G0?BBVazj)^#>i;tOww2wOCwO77^}0uX8Neo7KN@UgG`b~7<UemVL86`
zRHc@t3@3fm&wpNOg_10WNB}IiT*GX$G~HprNVTx|mXdG(4hL%z>Bq{#U&lSTJ{t<7
zInNh_46`I*dey=e*Gk!4j?ol{OJWxW1_+~sNpiciTpBTj`S(&T^Od+$8aCH$G<w*o
zG^l#v`bF?XjSX1Xj*JxP74Sj<wqed$$Tba=40u}S>VL@jn#l)8BG)--!<`ov3)l!)
z{2HatYaj#?TQ366*M*b-f2rnQGNF0sIlZ$%fj@7Buz`V9x{=OJLE05FEP*3LxqJ~?
zNz4t6WQUG^yJqj|Cu}A;99}pNJPuE`(=BA~Q00iZDQ8J6ByS{sRgm_4FC!_PuMFlN
z`Xyu13V*xu45og;`@N)5(pM%w0t23EZeR*7RE#smLt&}m!M;4cSs&>9_eWykVBU{A
zn7m+;9SH|IVgbh#T;xP3EH+DN_-uA-OEFw+B)1lmYL-^%^ewshH2g>&#B5H6DF+L8
zA_pymos;|i_=ntW0HYMFxv`L>Yb<qgRCPj1bAOluz+k25h=;U*E<>inBd&w;jff(y
zu|D>}7KkUNWgw|3ZFvaUmTQJAYF5Vb#CRDh>6pKAIvEypK$4+~?1Evk&qFA$v@@AO
zMUdIj$He{9`0XQt*R(Q<otlrvmi5d)3XH{chgl6*`9TF)Qbr?g3nGXkp1H>;lYxs=
zIDcfx!bh^pg)tHap=M(>G!Rjras8I`k-?ThplS|#1M69dle4StAI_{ZgAa6>#5I<%
zK>gW$1QgR4G-$0gm5JBP?<(7HY#5Z*)mKiw{X?I+1L7KzvnzbeeRAxC$&4NHDSuH4
zk8#=Zp)#mzIn*Kd%igQds9qCccO!?k7djrYOs+0rY~||#p4DREeOv+jq`<#{t;G%~
zZ<eCG6{yp=;U>@`E#nk(VA=Q;-Gq~bd<&Y>SOw3ulU)QbPSw)8EH!&ZsROQ0m{-_V
zhaz8*@>i4P7(ZQ)I=!di#!P0hnnD%z7rB4zU9}%K6tEim(+A_H4Q`;Id6i+4NnH23
z-S*SX@Ku%l%6cf1+XPjAIyUqj`PHn27e6@GbFl4hh}0*k4jl;^nS$i>&X9@b$;J7;
ztk%(K(u2X>j{Ljx7Bi~^(g~bMAI)}&-VwUo6!LX&Ew=C3`}3CMGuX%%PLoVY>Ka)e
z)u)06mmA2!?rOO${Ub;>5(Mx8nGZ$9_03))yu8>=VA}!|dsmf{uLT-Name=nH0)y)
zZhCX+?km1+$Eai+tgdB)jx}+iG@RUbp1r|Bd_8`bq3e4OT!$i4hc>aUY3FE5u%!n^
z3ZrUa(WS>krO#?elM)6#e^Y-d*I<`Hb9O8uZbjld5ojHK7f5Nix`xfr&c6n<YVOM>
zb6;+;RVG8aS+5(}cI>K(dQ#o@*%M4UUQ=WC;uKTBYHA41&uO-DVpDU=72W?Qz_Ih{
ziA)du6XQtWZgkExlfs&ln8mM2suo;(1oJ^Q&Dn?a!vHQCT0>Fif8j|EvQ&lQ>w)jp
zo_xF>oJO28!%t#rCTDyCsb%6cCdC5O&)^j)%u=~KbVKS@%f9he-J7ap?Ct0Q4Jcve
z1lDN|n`}C9RO7Lt+dNwE_B4Sz!B0A;=)!wE>91<zcd&`y0YAX3Qp5hnsoC;`?N+nZ
y30tM3)24toyjN#{BC3(*Uz$rg)?qI_PVONe9gS|^b*M=2YXy@&N#s8wY5eEi%=@+g

diff --git a/doc/html/search.html b/doc/html/search.html
index 26f95593..13bf240a 100644
--- a/doc/html/search.html
+++ b/doc/html/search.html
@@ -94,7 +94,7 @@
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/searchindex.js b/doc/html/searchindex.js
index 0259eea6..27c9ac4c 100644
--- a/doc/html/searchindex.js
+++ b/doc/html/searchindex.js
@@ -1 +1 @@
-Search.setIndex({filenames:["acknowledgement","any2many","bugtracking","cite","index","msr2data","mupp","musr-root","musredit","setup-dks","setup-standard","tutorial","user-libs","user-manual"],titles:["Acknowledgements","any2many - a Universal \u03bcSR-file-format converter","Bugtracking","How to Cite <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt>?","Welcome to the musrfit documentation!","msr2data - A Program for Automatically Processing Multiple <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt> msr Files","mupp - \u03bcSR Parameter Plotter","MusrRoot - an Extensible Open File Format for \u03bcSR","<tt class=\"docutils literal\"><span class=\"pre\">musredit</span></tt>: the GUI Based Interface to <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt>","Setting up <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt> / <tt class=\"docutils literal\"><span class=\"pre\">DKS</span></tt>: High Speed Fitting with GPU&#8217;s","Setting up <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt> on Different Platforms","Tutorial for <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt>","Documentation of user libs (user functions)","User manual"],terms:{"\u03b1":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03b2":[1,8,10,4,6,0,9,11,5,7,3],"\u03b4":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03b7":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03b5":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03b3":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03b9":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03ba":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c7":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03bb":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03bc":[1,8,10,4,6,13,0,9,11,5,7,12,3],"\u03bd":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03bf":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c9":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c0":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c6":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c8":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c1":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c2":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c3":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c4":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03b8":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03c5":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03be":[1,8,10,6,13,0,9,11,5,7,12,3],"\u03b6":[1,8,10,6,13,0,9,11,5,7,12,3],bastian:0,wojek:[0,3,5],veri:[8,10,13,0,11,7],much:[8,6,13,0,7],indebt:0,bmw:[0,4],rigor:0,test:[0,8,10],musrfit:0,mani:[8,10,13,0,5,7,12],suggest:[0,10,5],contribut:[12,0,11,13],largest:0,part:[10,8,13,0,11,7,12,3],user:[0,4],manual:[8,10,4,0,9,11,5],which:[8,10,6,13,0,9,11,5,7,12],make:[8,10,13,0,9,7],access:[8,10,0,9,7],broader:0,audienc:0,thank:0,uldi:0,locan:[0,3,9],work:[8,10,13,0,9,5,7,12],enabl:0,gpu:[0,3,4],support:[0,8,4],kind:[7,12,0],calm:0,extrem:0,compet:0,wai:[8,10,6,13,0,9,11,5,7,12],deal:[10,13,0,11,9,7,12],project:0,well:[13,0,11,9,5,12],chao:0,physicist:0,think:0,admir:0,allow:[1,8,10,6,13,9,5,7,12],most:[1,10,13,9,5,7,12],from:[1,8,6,9,5,7],other:[1,10,6,13,9,11,7],detail:[1,8,10,13,9,11,7,12],descript:[1,8,10,4,9,11,5,7],see:[1,8,10,6,13,9,11,5,7,12],here:[1,8,10,6,13,9,11,5,7],report:2,bug:[8,2],request:[10,6,13,11,2],"new":[8,10,13,11,2,5,7],featur:[2,4],improv:[12,10,2],pleas:[10,13,11,2,5,7,12,3],bitbucket:[13,10,2],repo:[9,2,10],prefer:[13,8,2,10],send:[13,2],mail:2,suter:[9,3,2],psi:[8,10,13,9,11,2,7,12],sinc:[10,13,9,11,5,7,3],quit:[8,10,13,7,3],some:[3,4,5],effort:3,develop:[8,3],mainten:[7,3],packag:[7,3],you:[8,10,6,13,9,7,3],should:[8,10,6,13,9,11,5,7,12,3],least:[10,13,11,5,3],your:[8,10,13,9,5,3],"public":[12,10,3,13],have:[8,10,13,9,11,5,7,12,3],analyz:[4,9,11,7,3],data:[8,10,6,4,9,5,7,3],even:[10,13,5,7,3],better:[13,3,5],cours:[13,10,3,5],properli:[13,9,3,5],refer:[8,10,13,9,11,7,12,3],given:[8,10,6,13,9,11,5,7,12,3],beneath:[8,3],free:[8,10,13,7,12,3],platform:[9,3,4],independ:[12,3,13],framework:[8,10,4,9,7,3],analysi:[10,13,9,11,5,7,12,3],physic:[7,9,3],procedia:3,http:[8,10,13,9,7,12,3],doi:3,org:[10,3],phpro:3,high:[7,3,4],speed:[3,4],version:[8,10,6,13,9,7,12,3],util:[10,13,9,7,3],"case":[8,10,6,13,9,11,5,7,12,3],thi:[8,10,6,13,9,11,5,7,12,3],also:[8,10,6,13,9,11,5,7,12,3],add:[8,10,6,13,9,11,5,7,3],follow:[8,10,6,13,9,11,5,7,12,3],citat:3,adelmann:3,dynam:[9,3],kernel:[9,3],schedul:[9,3],comput:[9,3,10],commun:3,cpc:3,real:[10,13,9,11,3],time:[8,10,6,13,9,11,7,12,3],paramet:[3,4],fit:[6,4,5,7,3],imag:[13,3,11],reconstruct:3,graphic:[3,4],process:[3,4],unit:[7,13,3,11],conf:[9,3,10],proc:3,jpscp:3,tutori:4,singl:[8,10,4,9,5,7],histogram:[7,8,4,9],asymmteri:4,introduct:4,avail:[6,4,7,5],execut:4,configur:4,basic:4,usag:4,msr:4,type:4,"function":[4,5],technic:4,lib:[9,4,10],meissner:4,profil:[9,4,10],vortex:4,lattic:4,relat:[7,8,4,10],nonloc:4,superconduct:4,screen:[10,4],nmr:4,bnmr:4,set:[8,6,4,5,7],differ:[8,6,4,9,5,7],oper:[8,6,4,9,7],system:[7,9,4],softwar:[7,4],requir:4,restrict:4,gnu:4,linux:[9,4],window:[8,4],mac:4,maco:4,tesla:4,k40c:4,nvidia:4,amd:4,card:4,radeon:4,"390x":4,opencl:4,musredit:4,gui:[6,4],base:[6,4,7,5],interfac:4,musrwiz:4,musrstep:4,mupp:[4,5],plotter:4,script:4,summari:4,msr2data:4,program:4,automat:4,multipl:4,option:4,global:4,mode:4,known:4,limit:4,provid:4,musrroot:4,extens:[6,4,5],open:[6,4],concern:4,root:[6,4],tmusrrunhead:4,concept:4,runinfo:4,detectorinfo:4,sampleenvironmentinfo:4,magneticfieldenvironmentinfo:4,beamlineinfo:4,exhaust:4,tree:4,includ:[4,5],everyth:4,tmusrrunphysicalquant:4,possibl:[6,4,5],represent:4,index:[13,4,5],search:[13,10,4],page:[8,10,4,9,11,7],origin:[12,8,13,5],written:[8,13,11,5,7,12],implement:[8,10,13,9,5,7,12],purpos:[13,10,11,5],input:[13,8,11,5],same:[10,6,13,9,11,5,7,12],summar:[11,5],result:[8,13,11,5,7,12],either:[8,10,6,13,11,5,12],triumf:[13,8,11,5],column:[8,13,11,5,7],ascii:[8,13,11,5,12],essenti:[7,13,8,5],collect:[8,10,6,13,11,5,7,12],old:[13,10,5],abridg:5,produc:[13,10,11,5],can:[8,10,6,13,9,11,5,7,12],view:[8,6,5],instanc:[10,6,13,5,7],howev:[10,13,9,11,5],thei:[10,13,9,11,5,7],complet:[10,9,11,5,12],backward:[7,13,5],compat:[13,9,10,5],languag:5,name:[8,10,6,13,9,11,5,7,12],longer:5,than:[8,10,13,11,5,7],five:[11,5],six:5,charact:[13,5],order:[10,13,9,5,7,12],establish:5,need:[8,10,13,9,11,5,7,12],ensur:[13,5],correct:[8,10,13,11,5],length:[7,12,5],apart:[12,10,5],numer:[12,10,5],might:[8,10,6,13,5,7,12],principl:[12,10,5],four:5,call:[8,10,6,13,11,5,7,12],suppli:[12,9,13,5],number:[8,10,6,13,9,11,5,7,12],firstrunno:5,lastrunno:5,interv:[13,5],specifi:[8,10,13,11,5,7,12],through:[10,13,11,5,7,12],first:[8,10,6,13,9,11,5,7,12],last:[7,8,5],condit:[12,5],necessari:[8,10,13,11,5,7],runlist:[13,5],where:[8,10,6,13,9,11,5,7,12],combin:[8,13,11,5,7],run0:5,run1:[13,5],run2:[13,5],runn:5,rang:[8,5],step:[7,8,9,5],sequenc:[13,10,11,5],posit:[7,13,11,5],integ:[7,13,5],etc:[8,10,13,9,5,7],runlistfilenam:5,contain:5,extern:[10,13,5,7,12],pass:[13,8,5],below:[10,13,11,5,7,12],all:[8,10,6,13,9,11,5,7],mandatori:[7,12,13,5],right:[10,13,11,5,7,12],after:[8,10,13,9,11,5,7],mean:[8,10,6,13,9,11,5,7,12],becom:[10,5],clear:[7,8,5],give:[10,13,11,5,7],exampl:[8,10,6,13,11,5,7,12],"_tf_h13":5,out:[8,10,6,13,9,11,5,7],chang:[8,10,13,9,5],"8472_tf_h13":5,"8473_tf_h13":5,"8474_tf_h13":5,"8470_tf_h13":5,directori:[8,10,13,9,11,5,7,12],put:[13,8,10,5],var1:5,var2:5,var3:5,comment:[8,10,6,13,9,5,7],empti:[13,8,6,5],line:[8,10,6,13,11,5,7,12],determin:[8,10,5],label:[8,6,13,5,7,12],present:[8,10,6,13,9,11,5,7,12],preced:5,mention:[10,13,5,7,12],togeth:[8,10,13,11,5,7],abov:[8,10,6,13,9,11,5,7,12],output:[8,6,13,11,5,12],onli:[8,10,6,13,9,11,5,7,12],newli:[8,11,5],creat:[7,5],did:[10,5],exist:[13,10,5],befor:[8,10,13,9,11,5,7,12],invok:[13,8,6,5],were:[7,13,8,5],alreadi:[8,10,13,9,5],would:[8,10,6,13,9,11,5,7,12],append:[13,10,5],been:[8,10,13,11,5,7,12],header:5,block:[8,10,11,5,12],forc:[13,5],suppress:5,nohead:[8,5],shall:[8,10,13,11,5,7,12],seen:[7,11,5],later:[13,10,11,5],like:[8,10,6,13,9,5,7,12],behavior:[13,5],ani:[8,10,13,9,11,5,7],simpl:[10,13,11,5,12],"default":[8,10,13,9,5],dat:[8,6,13,11,5,12],delet:[7,5],inform:5,both:[12,10,13,5],none:[13,8,11,5],write:5,sole:[13,5],assum:[8,10,13,9,11,5,7,12],nosummari:[8,5],attempt:5,read:5,addit:[8,10,13,9,11,5,7,12],temperatur:[6,13,11,5,7],appli:[10,13,11,5,7,12],magnet:[7,12,8,5],field:[8,6,9,11,5,7],paramlist:5,param:[13,8,6,5],select:[8,10,6,13,9,11,5,7],"export":[10,13,9,11,5],startno:5,endno:5,space:[12,10,13,5],separ:[8,10,13,11,5],outputfilenam:[13,5],instead:[10,6,13,9,5,12],equal:[13,11,5],insensit:5,addition:[8,10,13,11,5],"final":[10,13,11,5,12],templat:[13,8,11,5],perform:[8,10,6,13,11,5,7],mlog:[13,8,5],subsequ:[13,5],chain:[8,10,5],exclam:5,mark:5,without:[10,8,6,9,5,12],keep:[7,13,8,5],mn2:[13,5],done:[10,6,13,9,11,5,7,12],ignor:[13,6,5],titl:[7,8,11,5],illustr:[13,5],few:[8,10,13,5,7],explan:[13,5],oabc:5,"8400_tf_h13":5,"8460_tf_h13":5,abc:5,about:[10,13,11,5,7],"_zf":5,def:5,"8472_zf":[8,5],"8500_zf":5,"8502_zf":5,"8503_zf":5,"8504_zf":5,"8507_zf":5,oghi:5,ouput:5,ghi:5,take:[10,13,11,5,12],"8471_tf_h13":5,"8475_tf_h13":5,bestdata:5,"8476_tf_h13":5,"8477_tf_h13":5,"8478_tf_h13":5,"8479_tf_h13":5,describ:[8,10,13,9,11,5,7,12],anoth:[8,6,13,5,7],each:[10,6,13,11,5,7,12],defin:[8,10,6,13,11,5,7,12],common:[13,10,5],specif:[8,10,13,11,5,7,12],when:[8,10,13,11,5,7,12],obtain:[7,12,5],valid:5,conjunct:[12,10,13,5],invoc:[13,5],state:[11,5],idea:[7,13,11,5],basi:5,identifi:[13,5],tag:[10,8,6,13,9,11,5,12],current:[8,10,6,13,9,5,7,12],"0xu":5,digit:[13,5],lead:[8,13,5,7,12],zero:[8,13,11,5,7],end:[8,10,6,13,11,5,7],alpha0123:5,alpha00123456:5,fitparamet:[8,11,5],exemplari:[13,5],"8472_exampl":5,could:[10,8,6,13,9,5,12],therefor:[10,13,11,5,12],look:[8,10,6,13,9,5,7,12],valu:[8,10,13,9,11,5,7],pos_error:[13,11,5],boundari:[8,13,11,5,12],phase:[8,13,11,5,12],asy8472:5,rate8472:5,treat:[10,5],wherea:[13,8,5],normal:[13,10,11,5],within:[8,10,6,13,11,5,7,12],appear:[13,5],explicitli:[13,8,5],theori:5,those:5,met:5,"try":[13,10,5],substitut:[13,10,11,5],them:[8,13,11,5,7,12],map:[7,5],accordingli:[10,11,6,5],"_exampl":5,global_exampl:5,alwai:[7,12,13,5],start:[8,10,6,13,9,11,5,7],asy8471:5,rate8471:5,asy8470:5,rate8470:5,show:[8,6,13,11,5,7],reorgan:5,begin:[7,13,10,5],copi:[13,8,10,5],found:[8,10,13,9,11,5,7,12],dure:[10,6,13,5,12],affect:5,occurr:[10,5],awar:[13,10,5],fact:[10,5],propag:5,model:[10,5],usual:[12,5],store:[8,10,5,7,12],reach:[13,5],goal:[13,5],obei:[13,5],certain:[12,5],rule:[7,13,8,5],match:[13,5],accord:[8,10,13,11,5],achiev:[10,11,5],easili:[8,10,9,5],shown:[8,6,13,11,5,7],globalfit:5,relev:[8,13,11,5,7],pre:[8,5],afterward:[10,6,13,9,5,7,12],special:[7,13,10,5],replac:[13,9,10,5],review:5,activ:[12,8,10,5],choos:[8,10,13,11,5,12],keyword:[13,5],onerunfit_exampl:5,onerunfit:5,everi:[13,10,6,5],similar:[10,5],explain:[8,10,13,9,11,5,7,12],moment:[7,12,10,5],peopl:[7,10,5],cannot:[12,13,5],behav:[12,5],integr:[12,10,5],filenam:[7,13,5],rightmost:5,highest:[10,5],treatabl:5,statist:[8,11,5],itself:[11,5],more:[8,10,6,13,9,11,5,7],creativ:5,care:[13,10,5],addrun:[13,5],statement:[13,5],simpli:[13,10,5],probabl:[7,10,5],what:[10,13,9,11,5,12],two:[8,10,13,11,5,7,12],success:[7,13,11,5],encount:5,actual:[12,10,13,5],measur:[8,6,13,11,5,7,12],introduc:[7,13,11,5],reason:[10,13,9,11,5],shape:[12,13,5],design:[10,5],especi:[10,13,9,5,7,12],manipul:[13,8,5],front:[7,8,11,5],offer:[13,11,5],almost:[13,8,5],self:[8,5],explanatori:[8,5],depict:[13,5],under:[8,10,6,13,9,5,7],stai:5,enter:[8,10,9,5],otherwis:[13,9,10,5],serv:[13,11,5],second:[8,10,13,11,5,12],noth:[7,13,8,5],correspond:[8,10,6,13,11,5,7],littl:[13,8,6],helper:[7,8,6,10],quickli:[9,6],plot:[7,8,11,6],handl:[8,10,6,13,7,12],heavili:[12,6],inspir:6,via:[7,8,6],command:[8,10,6,9,11,12],directli:[8,10,6,13,7],typic:[8,10,6,13,9],load:[12,6],dialog:[8,6],tri:[13,10,6],fly:[11,6],drag:[11,6],over:[13,10,6],axi:[6,13,11,7,12],wish:[13,6],click:[13,8,6],analog:6,remov:[13,6],often:[13,8,6,10],compar:[13,9,6,10],trend:6,hold:[7,13,6],energi:[7,12,6],scan:[13,6],now:[10,6,13,9,11],interest:[13,10,6],ditto:6,less:[13,10,6],error:[8,10,6,13,9,11,7,12],prone:[8,6,9],quicker:[13,6],button:[13,8,11,6],mupp_plot:6,applic:[8,10,6,13,9,12],refresh:6,reload:[8,6],beamtim:6,grow:6,task:6,mous:[13,6],gambl:6,futur:[8,6,10],plane:6,help:[8,10,6,13,9],cmd:[10,6],manner:[10,6],updat:[10,6,13,9,11],web:[8,10,6,13,7],interact:[12,11,6,13],figur:[7,13,6],loadpath:6,dir:6,path:[8,10,6,13,9,11,7],bash:[10,6],variabl:6,home:[8,10,6,13,9,7,12],accept:[13,8,6],coll:6,selectal:6,carri:[13,10,6],ybco:6,"40nm":6,t5k:6,fc150mt:6,escan:6,addx:6,addi:6,savepath:6,save:[8,10,6,13,11,7,12],place:[13,10,11,6],macro:6,fln:[13,6],txt:[10,6],t30k:6,t60k:6,t120k:6,fieldvsenergi:6,pdf:[13,6],"true":[7,12,13,6],best:[10,6,13,7,12],ever:[7,6],thie:6,labl:6,until:[7,13,11],bulk:7,instrument:[7,13,8],bin:[8,10,13,11,7],fix:[7,13,8,11],binari:[7,10],rather:[7,13,8,10],stringent:7,lem:[7,12,13],cern:[7,13,10],tightli:7,tailor:7,situat:[7,13,10],unsatisfactorili:7,henc:[10,13,9,11,7],decid:[7,13,10],move:[7,13,11],forward:[7,13,9,11],acquisit:7,mida:7,respons:[7,13,9],build:[7,9],decai:[7,13,11],easi:[7,8],object:[7,10],th1f:7,orient:[7,12],mine:7,frame:[7,13,9],tfile:7,eas:[7,13,10],understand:[7,13],upcom:[7,10],definit:[7,13,11],thing:[8,10,13,9,7],check:[7,8,9],guid:[7,13,9],organ:[7,13,8],similarli:[7,13],browser:7,inspect:7,tbrowser:7,deriv:[7,13],tobject:7,small:[8,10,13,9,7,12],subset:[7,13],tfolder:7,top:[7,10],level:[7,13],tobjarrai:7,tobjstr:7,content:[7,13,10],form:[10,13,9,11,7,12],box:[7,8,9],entri:[7,13],sketch:[7,13],histo:[8,10,13,11,7],decayanamodul:7,hdecay001:7,hdecay002:7,scanamodul:7,hsampletemperatur:7,hsamplemagneticfield:7,detector001:7,detector002:7,hdecayxxx:7,xxx:7,"int":7,"03d":7,notat:[7,13],"class":[7,12,13],folder:[7,10],next:[8,10,13,9,7,12],section:[7,13,10],slow:7,control:[7,13,9],sampl:[7,12,9,11],versu:7,again:[8,10,13,9,7],meta:7,minim:[10,13,11,7,12],bracket:7,item:[7,13],detector:[8,13,11,7,12],environ:[7,8],beamlin:[7,13,8,11],elabor:[7,9],word:7,sub:[7,13,10,11],intern:[7,13,8],tstring:7,git:[7,13,9,10],url:7,xsd:7,wrote:7,nemu_analyz:7,deltat_tdc_gps_4295:7,int_t:[7,13],iso:7,date:[7,13,11],stop:7,durat:7,sec:[7,13],laboratori:7,muon:[8,10,11,7,12],beam:7,momentum:[7,12,11],mev:7,speci:7,neg:[7,8,11],sourc:[7,9],target:7,low:[7,12,13],setup:[7,13,9,10],cf1:7,wxy:7,resolut:[7,12],redgreen:[7,13],offset:[7,13],tintvector:7,except:[7,13,8,10],shortli:[7,13],discuss:[7,13,8,9],experi:[7,13],stimuli:7,electr:7,off:[7,13,10],doubl:7,distinguish:7,easier:[7,10],let:7,sai:7,red:[10,13,9,11,7],green:[7,13,11],browsabl:7,string:[7,13,8,10],tobjstringv:7,quantiti:7,repres:[7,13,11],properti:[7,13],estim:[7,12,8,13],demand:[7,13],depend:[8,10,13,9,11,7,12],musrrootv:7,mock:7,print:[7,13,8],notic:[7,13,8],find:[7,8,10,9],encod:[8,10,13,7,12],price:7,pai:7,shade:7,"import":[7,13],approach:[7,13,10],standard:[7,13,9,10],"abstract":[7,13],text:[7,13,8,11],though:[7,8,10],clean:[7,9,10],lot:[7,13],"2nd":7,slightli:[7,13,8,9],advantag:[7,13,8,10],maintain:7,expand:7,classifi:7,group:[7,13,8,10],previou:[7,13],"float":7,point:[8,10,13,11,7,12],double_t:[7,13],tstringvector:7,tdoublevector:7,themselv:[7,12],vector:[7,12,13],code:[10,13,9,11,7,12],snippet:[7,13],reader:7,routin:[7,12,10,13],convers:[7,13],write_musrroot_runhead:7,full:[7,13,10,11],concentr:7,just:[10,13,9,7,12],prop:7,further:[7,8,10],down:[7,13,8,11],deltat_tdc_gps_2871:7,come:[7,8,10],overload:7,pathnam:7,method:[7,13],tdc:[7,13],cf3:7,mrh_undefin:7,strang:7,fed:[7,13],whole:7,someth:[7,13,9,10],recreat:[7,8],iszombi:7,"return":[7,13],info:7,fillfold:7,close:[7,13,8,10],read_musrroot_runhead:7,getobject:7,cerr:[7,13],endl:[7,13],couldn:[7,13],get:[8,10,13,9,7],closefil:7,extractal:7,decod:7,fill:[7,13,11],getter:7,bool_t:[7,13],ival:7,cout:7,els:[7,13,8,10],getvalu:7,geterror:7,getunit:7,getdemand:7,getdescript:7,mechan:[7,13],inde:7,minimum:7,scheme:7,musrrootvalid:7,recurs:7,pars:7,temporari:7,xml:7,ampl:[7,13],parser:[7,10],hand:[7,13,10],decent:7,book:7,libxml2:[7,10],becaus:[7,8],suppos:[7,13,10],against:7,schema:7,lmu:[7,8],semant:7,preform:7,cross:[7,13,10],facil:[7,13,8],musrrootlem:7,poitiv:7,wew:7,hdecay023:7,detector023:7,potenti:7,discontinu:7,"break":7,element:7,left:[7,12,8],npp:[8,10,13,11,7],spectromet:[7,13,9,11],good:[8,10,13,9,7],enough:[7,13,10],cryo:7,cryostat:7,oven:7,konti:7,pim3:[7,13,11],hypothet:7,light:7,per:[7,13,8],bottom:7,split:[7,13,10],mind:7,symbol:[7,10],hdecay003:7,hdecay004:7,hdecay007:7,hdecay008:7,hdecay011:7,hdecay012:7,hdecay013:7,hdecay014:7,hdecay017:7,hdecay018:7,hdecay021:7,hdecay022:7,hdecay024:7,hdecay027:7,hdecay028:7,hdecay031:7,hdecay032:7,hdecay033:7,hdecay034:7,hdecay037:7,hdecay038:7,continu:7,"switch":[8,10,13,9,7],jump:[7,13],cpp:[7,13],"00z":7,nemu:[7,13,10],lem12_his_0234:7,said:7,detector038:7,insert:7,x123:7,perp:7,spin:[7,12,11,13],mue4:[7,13,8],scalerinfo:7,runsummari:7,wed:7,oct:7,lco:7,wtf:7,kev:[7,12],ledb:7,buc:7,edit:[7,8,11,10],euc:7,event:[7,11],event_0:7,mcp1:7,event_1:7,mcp2:7,event_2:7,lemusr:7,problem:7,deviat:7,hereaft:7,snip:7,somewher:[7,8,10],token:[7,13],val:[7,13],err:7,cf4:7,cf5:7,editor:[8,11,10],suit:[12,8,11,13],intend:[13,8,10],eventu:[8,11,10],drop:[8,10],outdat:[13,8,10],earli:[13,8],anymor:[8,10],still:[8,10,13,9,12],urg:8,strongli:[8,10],recommend:[12,8,10],shell:[13,8,10],tab:8,startup:8,displai:[12,8,13,10],locat:[8,10,13,11,12],proof:8,exec_path:8,path_to_exec:8,musrview:[8,10],musrt0:8,insid:[12,8,13,10],default_save_path:8,save_path:8,msr_default_file_path:8,msr_def_path:8,timeout:[13,8],canva:[13,8,11],keep_minuit2_output:8,flag:[13,8],minuit2:[13,8,10],kept:[13,8],dump_ascii:8,dump:[13,8],dump_root:8,title_from_data_fil:8,chisq_pre_run_block:8,chisq:[13,8,11],estimate_n0:8,procedur:[8,10,13,9,11,12],musrview_show_fouri:8,fourier:[12,8,11,10],transform:[8,10,13,11,12],domain:[13,8,11],musrview_show_avg:8,averag:[12,8,13],power:[8,10,13,9,11],spectra:[13,8],enable_musrt0:8,font_set:8,font:[8,10],font_nam:8,font_siz:8,size:[13,8],msr_file_default:8,institut:[13,8,11],inst:8,ral:8,jparc:8,file_format:[13,8],nexu:[8,9],musr:[13,8],ppc:[13,8,11],mdu:[13,8,11],wkm:[13,8,11],mud:[13,8,11],lifetime_correct:8,lifetimecorrect:[13,8],msr2data_default:8,tick:8,chain_fit:8,write_data_head:8,ignore_data_header_info:8,write_column_data:8,create_msr_file_onli:8,fit_onli:8,global_plu:8,recreate_data_fil:8,open_file_after_fit:8,experienc:[8,10],who:8,help_sect:8,variou:[13,8,10],messag:[13,8],musr_web_x:8,link:[13,8,10],main:[8,11,10],musrft:[8,11],func_pixmap_path:8,pix_path:8,latex:8,pixmap:8,visual:[8,11],theory_funct:8,syntax:[13,8],func:8,menu:[13,8,11,10],pictur:8,utf:[12,8,13,10],xmln:[13,8],html:8,usr:[8,10],local:[12,8,10,9],share:[13,8,10,9],doc:[13,8,11,10],chisq_per_run_block:8,recent_fil:8,path_file_nam:8,musr_web_main:8,musr_web_titl:8,thetitl:8,musr_web_paramet:8,thefitparameterblock:8,musr_web_theori:8,thetheoryblock:8,musr_web_funct:8,thefunctionsblock:8,musr_web_run:8,therunblock:8,musr_web_command:8,thecommandsblock:8,musr_web_fouri:8,thefourierblock:8,musr_web_plot:8,theplotblock:8,musr_web_statist:8,thestatisticblock:8,musr_web_msr2data:8,musr_web_musrft:8,a_2:8,"3_musrft":8,monospac:8,latex_imag:8,asymmetri:[12,8,11],png:[13,8],statgsskt:[13,8],rate:[12,8,11,13],"static":[12,8,10],gauss:[12,8,11,13],respect:[8,10,13,11,12],bar:[13,8],keyboard:[8,11],shortcut:[8,11],scratch:8,too:[8,10],priori:8,knowledg:8,calcul:[8,10,13,11,12],log:[12,8,13],max:[13,8],likelihood:[12,8,13],kei:[8,10],alt:8,equival:[13,8,10],mai:[13,8,10],chosen:[13,8,10],swap:[13,8],vice:[13,8],versa:[13,8],adjust:[13,8,11,10],initi:[8,10,13,11,12],fitter:8,own:[13,8],docu:[13,8,9],raw:[13,8],dump_head:8,stage:[13,8],wand:8,coupl:[13,8,9],dialogu:8,briefli:8,explicit:[13,8],year:[13,8,9],pull:[8,10],choosen:8,rrf:[8,9],minu:8,transvers:[13,8,11],longitudin:8,choic:[13,8,10],question:8,ask:[8,10],correctli:[13,8,11,10],proper:[13,8,9],prompt:[13,8,10,9],peak:[12,8,13],pop:8,disadvantag:8,freeli:8,custom:[13,8],cost:8,yourself:8,stand:[8,9],whatev:[8,9],press:[13,8,11],syntact:8,appropri:[8,9],previous:8,handi:8,furthermor:[13,8,10],pack:[13,8,11,10],minuit:[12,8,13],reset:[13,8],sometim:[13,8],went:[8,10],wrong:8,leav:8,far:[13,8],iter:[12,8,13],individu:[13,8],tediou:[12,8],popup:8,asym:8,uncheck:8,unselect:8,modifi:[12,8],degre:[13,8,11],cancel:8,anyth:[13,8],scale:[13,8],factor:[13,8],absolut:[13,8,11,10],explor:[9,10],hal:[13,9],memo:[13,9],rotat:[13,9,11],tremend:[9,10],muonium:[13,9],appl:[9,10],cpu:[13,9,10],straight:9,multi:[13,9,10],thread:[13,9,10],doesn:9,openmp:[13,9,10],shop:9,bui:9,gamer:9,sure:[13,9,10],server:[9,10],suffici:[12,9],strong:[13,9,11],yet:[12,9,11,13],fall:[13,9],back:[13,9],conceptu:9,latest:[9,10],hardwar:9,crunch:9,readi:[13,9,10],acceler:[13,9],termin:[13,9,11,10],lspci:9,grep:[9,10],corpor:9,gk110bgl:9,rev:[12,9,13],recogn:9,download:[9,10],center:[12,9],hat:[9,10],enterpris:9,rhel:[9,10],rpm:[9,10],diag:9,rhel7:9,x86_64:9,conflict:9,nouveau:9,reboot:9,machin:[12,9,10],omit:[13,9,10],thin:[12,9],host:9,incorpor:9,paper:9,wiki:9,brief:[9,10],clone:[9,10],got:9,consist:[12,9,13],gitlab:[13,9,10],uldis_l:9,mkdir:[9,10],denable_musr:9,dcmake_install_prefix:[9,10],exec:9,non:[12,9],librari:[12,9,13,10],"super":9,sbin:[9,10],ldconfig:[9,10],ld_library_path:[9,10],launchctl:[9,10],setenv:[9,10],checkout:[9,10],branch:[9,10],dks6:9,soon:[9,10],want:[13,9,10],tell:[13,9],aslib:[9,10],bmwlib:[9,10],prefix:[9,10],rootsi:[9,10],lookup:9,superus:[9,10],ddk:9,disabl:[13,9,10],daslib:[9,10],dbmwlib:[9,10],dnexu:[9,10],vga:9,advanc:9,micro:[13,9],devic:9,inc:9,ati:9,hawaii:9,grenada:9,"290x":9,amdgpu:9,pro:[9,10],unpack:[9,10],tar:[13,9,10],jxvf:9,blabla:9,usermod:9,video:9,technolog:9,materi:9,leverag:9,amp:9,xvjf:9,sdkinstal:9,linux64:9,bz2:[13,9],opt:[13,9,10],amdappsdk:9,note:[12,9,13,10],instruct:[13,9,10],compil:[13,9,10],xcode:[9,10],deliv:9,easiest:9,involv:[12,9],demonstr:10,"while":10,brave:10,virtual:10,encourag:10,gcc:[13,10],tool:[13,10],autoconf:10,libtool:10,toolchain:10,drope:10,releas:[13,10],plan:10,pkg:10,config:10,boost:10,spirit:10,scientif:[12,10,13],effici:[12,10,13],mathemat:[13,10],fftw:10,fast:10,discret:[10,11],toolkit:10,gnome:10,hdf4:[13,10],manag:10,hdf5:[13,10],minixml:10,neutron:10,rai:10,scienc:10,focus:10,seriou:10,distribut:[10,11],fedora:10,debian:10,ubuntu:10,mint:10,opensus:10,nativ:10,microsoft:10,distributor:10,taken:[13,10],dev:10,devel:10,trick:10,never:10,qt4:10,yum:10,gsl:10,qtwebkit:10,qt5:10,epel:10,qtbase:10,qtsvg:10,dpkg:10,apt:10,libboost:10,libgsl:10,libfftw3:10,libqt4:10,libqtwebkit:10,qtbase5:10,libqt5svg5:10,libqt5webkit5:10,everyon:10,know:10,himself:10,doe:[13,10],websit:10,engin:10,mxml:10,hdf:10,libmxml1:10,libmxml:10,libhdf4:10,libhdf5:10,urgent:[13,10],isi:[13,10],safe:[13,10],master:10,repositori:10,github:10,com:10,nexusformat:10,denable_hdf5:10,denable_hdf4:10,denable_mxml:10,sudo:10,flavour:10,legaci:10,incompat:10,guess:[13,10],warn:[13,10],upgrad:10,recompil:10,redhat:10,libx11:10,libxft:10,libxpm:10,libxext:10,systemat:10,term:10,offici:10,root_build:10,dgminim:10,dasimag:10,dmathmor:10,dminuit2:10,dxml:10,root_exec:10,multicor:10,miss:[13,10],told:10,luke_skywalk:10,echo:10,bashrc:10,bash_profil:10,restart:10,onc:[12,10,11,13],proceed:10,recent:[13,10],muonspin:10,root5:10,root6:10,newer:10,dec:10,whether:[13,10],uninstal:10,xarg:10,install_manifest:10,altern:[13,10],autogen:10,prepar:10,successfulli:[13,10],makefil:[13,10],besid:10,fftw3:[12,10],boostinc:10,qt3:10,qt47:10,lib64:10,omp:[13,10],parallel:[12,10,11,13],detect:[10,11],permiss:10,dbnmrlib:10,bnmrlib:10,dqt_based_tool:10,dqt_version:10,auto:10,dtry_openmp:10,core:10,finish:[10,11],musrfitpath:10,musrfit_startup:10,built:[13,10],everth:10,src:10,musredit_qt5:10,qmake:10,fine:10,skip:10,higher:10,uic:10,quick:[13,10],hasn:10,adventur:10,advic:10,wonder:10,occur:10,great:10,gain:10,nice:[12,10],unix:10,revis:[13,10],fulfil:10,abl:10,a2p:10,passwd:10,binutil:10,bison:10,bzip2:10,colorgcc:10,coreutil:10,curl:10,cygutil:10,editright:10,findutil:10,flex:10,adob:10,dpi100:10,dpi75:10,alia:10,bitstream:10,ibm:10,type1:10,sun:10,misc:10,xfree86:10,fontconfig:10,freeglut:10,gawk:10,gcc4:10,fortran:10,gccmakedep:10,gettext:10,ghostscript:10,std:[13,10],giflib:10,gmp:10,groff:10,gzip:10,inputproto:10,jasper:10,jpeg:10,lapack:10,libbz2_1:10,libcharset1:10,libcurl4:10,libfftw3_3:10,libgcc1:10,libgd:10,libgif:10,libgl:10,libgl1:10,libglu:10,libglu1:10,libglut:10,libglut3:10,libgmp:10,libgmp3:10,libgomp1:10,libic:10,libice6:10,libjpeg:10,libjpeg62:10,liblapack:10,libmpfr:10,libmpfr1:10,libncurs:10,libncurses9:10,libosmesa:10,libosmesa7:10,libpng:10,libpng14:10,libreadline6:10,libsm:10,libsm6:10,libssh2_1:10,libstdc:10,libtiff:10,libtiff5:10,libx11_6:10,libxau:10,libxau6:10,libxaw7:10,libxcb:10,xlib:10,libxcursor:10,libxcursor1:10,libxdmcp:10,libxdmcp6:10,libxext6:10,libxfix:10,libxfixes3:10,libxfont:10,libxfont1:10,libxft2:10,libxi:10,libxi6:10,libxkbfile1:10,libxmu:10,libxmu6:10,libxpm4:10,libxrend:10,libxrender1:10,libxt:10,libxt6:10,login:10,makedepend:10,man:10,mpfr:10,nano:10,opengl:10,openssh:10,openssl:10,pdftk:10,perl:10,ping:10,psutil:10,python:10,readlin:10,rebas:10,rgb:[13,10],rsync:10,sed:10,subvers:10,tcltk:10,terminfo:10,unzip:10,vim:10,w32api:10,icon:[13,10,11],xauth:10,xextproto:10,xfontsel:10,xinit:10,xkbcomp:10,xkeyboard:10,xkill:10,xlogo:10,xlsfont:10,xorg:10,xproto:10,xrdb:10,xrefresh:10,xset:10,xterm:10,zip:10,zlib:10,zlib0:10,libqt3support4:10,libqtassistantclient4:10,libqtcore4:10,libqtdbus4:10,libqtdesigner4:10,libqtgui4:10,libqthelp4:10,libqtnetwork4:10,libqtopengl4:10,libqtscript4:10,libqtscripttools4:10,libqtsql4:10,libqtsvg4:10,libqttest4:10,libqtwebkit4:10,libqtxml4:10,libqtxmlpatterns4:10,posix:10,convent:[12,10],hard:10,drive:10,network:10,cygdriv:10,stick:10,had:10,x_yy_z:10,"1_33_1":10,librpc:10,sunrpc:10,track:10,patch1:10,www:[12,10],hdfgroup:10,ftp:10,jpegsrc:10,v6b:10,msweet:10,project3:10,hdf_current:10,precompil:10,xzf:10,root_v5:10,win32gcc:10,due:[12,10,13],visit:10,gminim:10,asimag:10,mathmor:10,accomplish:10,usernam:10,qtdir:10,i686:10,reopen:10,qt56:10,readili:10,startxwinrc:10,status_access_viol:10,ash:10,rebaseal:10,resolv:10,administr:10,privileg:10,extent:10,emploi:10,emphas:10,rout:10,dvd:10,xcodebuild:10,licens:[13,10],x11:10,leopard:10,snow:10,xquartz:10,macosforg:10,trac:10,newest:10,port:10,selfupd:10,remark:[13,10],synchron:10,frequent:10,happen:10,servic:10,firewal:10,svn:10,trunk:10,dport:10,sync:10,pkgconfig:10,qtwebengin:10,past:10,unfortun:10,subject:10,mini:10,michaelrsweet:10,lazi:10,dmg:10,sierra:10,writ:10,root_v6:10,macosx64:10,clang91:10,owner:10,life:[13,10,11],chown:10,chgrp:10,staff:10,exactli:[13,10],wisdom:[12,10],harder:10,adopt:[13,10],parenthes:[13,10],macosx:10,plist:10,doctyp:10,dtd:10,propertylist:10,dict:10,qt3mac:10,stabl:10,crypto:10,unstabl:10,finkcommand:10,boost1:10,nopython:10,shlib:10,libtool2:10,qtwebenginecor:10,qtwebenginewidget:10,bit:10,earlier:10,"1_63_0":10,cpp11:10,circumst:10,finder:10,workaround:10,dyld_library_path:10,mgui:10,differenti:[13,11],diamagnet:[12,11],approxim:11,geometri:11,positron:[12,11],counter:11,precess:11,"3110_tutori":11,conveni:11,underli:11,divid:[12,11],xyz:11,normup:11,bgup:11,phaseup:11,normdown:11,bgdown:11,phasedown:11,normright:11,bgright:11,phaseright:11,asymsig1:11,ratesig1:11,fieldsig1:11,asymsig2:11,ratesig2:11,fieldsig2:11,uncertainti:[12,11],asymmetr:11,lower:[13,11],upper:[13,11],constant:[13,11],background:[13,11],uncorrel:11,three:[12,11],remain:11,signal:[12,11,13],holder:11,amplitud:11,depolar:[12,11,13],simplexpo:[13,11],tfieldco:[13,11],map1:[13,11],fun1:[13,11],frequenc:[12,11,13],simplegss:[13,11],fun2:[13,11],predefin:[13,11],multipli:[13,11],sign:11,fun:11,interrel:11,gamma_mu:[13,11],par12:11,par15:11,altogeth:[13,11],deltat_pta_gps_3110:11,fittyp:[13,11],norm:[13,11],backgr:[13,11],map2:[13,11],map3:11,undefin:11,implant:[12,11],exce:11,mino:[12,11,13],mhz:[12,11,13],fourier_pow:[13,11],apod:[13,11],weak:[13,11],medium:[13,11],real_and_imag:[13,11],par3:[13,11],imaginari:[13,11],drawn:[13,11],abscissa:[13,11],ordin:[13,11],use_fit_rang:[13,11],third:[12,11,13],ndf:11,freedom:[13,11],converg:[12,11,13],blue:[13,11],maximum:[13,11],count:[13,11],zoom:[13,11],graph:[13,11],around:[13,11],cursor:[13,11],suitabl:11,repeat:[13,11],proce:11,comma:[13,11],between:[12,11,13],"short":[13,11],conclud:11,attent:[12,11,13],"3111_tutori":11,"3114_tutori":11,"_tutori":11,snapshot:11,dark:11,theme:11,facilit:12,gyromagnet:12,ratio:12,smu:12,outlin:12,literatur:12,reli:12,repeatedli:12,sizabl:12,worth:12,maxim:[12,13],trial:12,deserv:12,effect:[12,13],shift:[12,13],advis:12,prove:12,appreci:12,induct:12,vari:[12,13],dimens:12,incid:12,simul:12,trim:12,arrai:12,total:[12,13],thick:12,solv:12,equat:[12,13],layer:12,account:[12,13],superfluid:12,macroscop:12,dover:12,adjac:12,penetr:12,depth:12,constitu:12,half:12,film:12,userfcn:[12,13],tlondon1dh:12,deg:12,dead:12,tlondon1d1l:12,fraction:[12,13],substrat:12,bilay:12,heterostructur:12,tlondon1d2l:12,trilay:12,tlondon1d3l:12,investig:12,flux:12,probe:12,randomli:12,spatial:12,seri:12,reciproc:12,coeffici:[12,13],coher:[12,13],gaussian:12,cutoff:12,brandt:12,temp:12,phy:[12,13],riseman:[12,13],analyt:12,ginzburg:12,landau:12,yaouanc:[12,13],dalma:[12,13],réotier:[12,13],bessel:[12,13],region:[12,13],triangular:12,grid:12,inter:12,distanc:12,tbulktrivortexlondon:12,tbulktrivortexml:12,tbulktrivortexagl:12,tbulktrivortexngl:12,migrad:[12,13],proven:12,larg:[12,13],futil:12,strategi:[12,13],max_likelihood:[12,13],hess:[12,13],bmw_startup:12,debug:[12,13],one_or_zero:12,deactiv:12,path_to_fil:12,invalid:12,delta_t:12,rest:12,microsecond:12,delta_b:12,resb:12,vortexlattic:12,n_vortexgrid:12,data_path:[12,13],data_path_prefix:12,n_theori:12,invers:12,energy_list:12,energy_label:12,rge:12,expect:[12,13],belong:12,wordsofwisdom:12,trimsp:12,"02_0":12,"03_0":12,"03_6":12,"05_0":12,"05_3":12,relax:[12,13],slr:12,reson:[12,13],lineshap:12,puls:12,evolut:12,salman:12,prl:12,lifetim:[12,13],exponenti:[12,13],exprlx:12,stretch:12,sexprlx:12,expon:[12,13],chemic:12,anisotropi:12,powder:12,mehr:12,solid:[12,13],springer:12,axial:12,symmetr:12,observ:12,paralel:12,perpendicular:12,symmetri:12,anisotrop:12,along:12,loss:12,ellipt:12,linegauss:12,fwhm:12,height:12,lorentzian:12,linelorentzian:12,laplacian:12,linelaplac:12,skew:12,lineskewlorentzian:12,width:[12,13],lineskewlorentzian2:12,convolut:12,powderlineaxiallor:12,powderlineaxialgss:12,powderlineasymlor:12,princip:12,powderlineasymgss:12,gpl:13,philosophi:13,abil:13,fcn:13,sever:13,correl:13,renam:13,msr_file_without_extens:13,msr_file:13,maxlh:13,estimaten0:13,timeout_tag:13,overwrit:13,prevent:13,orphan:13,jam:13,"8472_tf_histo":13,avg:13,graphic_format_extens:13,session:13,"8472_0":13,gif:13,jpg:13,svg:13,xpm:13,"8472_x":13,experiment:13,action:13,canvas:13,toggl:13,spectrum:13,area:13,hair:13,consid:13,beta:13,feed:13,exit:13,"3310_0":13,subtract:13,fopt:13,neither:13,nor:13,pad:13,angular:13,interpret:13,lem15_his_01234:13,rebin:13,fudg:13,elimin:13,sens:13,tweak:13,tdc_hifi_2014_00153:13,mnsi:13,"50k":13,unzoom:13,crosshair:13,gett0frompromptpeak:13,firstgoodbinoffset:13,argument:13,color:13,channel:13,interrupt:13,msr_file_in:13,msr_file_out:13,parc:13,wors:13,aim:13,idf1:13,idf2:13,nexus1:13,nexus2:13,flexibl:13,filenamelist:13,lem10_his_0111:13,lem10_his_0113:13,run3:13,runstart:13,runend:13,rrrr:13,rrrrrr:13,yyyi:13,unless:13,sent:13,stdout:13,compress:13,absent:13,lem10_his_0123:13,lem10_his_0123_v2:13,idf:13,deltat_tdc_gps_:13,d2001:13,deltat_tdc_gps_0123:13,deltat_tdc_gps_0137:13,deltat_tdc_alc_:13,rrr:13,spit:13,psi_gps_:13,psi_:13,"_gps_":13,psi_gps_run_100to117:13,archiv:13,lem10_his_0012:13,rebin25:13,lem10_his_0123_rebin25:13,runno:13,fileformat:13,pta:13,ltf:13,dolli:13,gpd:13,hifi:13,tdc_hifi_2015_00123:13,construct:13,path_to_data:13,write_per_run_block_chisq:13,pearson:13,fourier_set:13,phase_incr:13,phincr:13,increment:13,optim:13,root_set:13,marker_list:13,marker:13,color_list:13,intranet:13,mnt:13,unlik:13,headlin:13,style:13,lower_boundari:13,upper_boundari:13,init:13,alpha:13,asi:13,freq:13,constrain:13,semi:13,par:13,asy1:13,rate1:13,asy2:13,field2:13,rate2:13,whitespac:13,avoid:13,whenev:13,abbr:13,express:13,"const":13,generexpo:13,stg:13,statgssktlf:13,sgktlf:13,dyngssktlf:13,dgktlf:13,statexpkt:13,sekt:13,statexpktlf:13,sektlf:13,dynexpktlf:13,dektlf:13,combilgkt:13,lgkt:13,strkt:13,skt:13,spinglass:13,spg:13,rdanisohf:13,rahf:13,internfld:13,internbsl:13,abragam:13,skewedgss:13,skg:13,staticnkzf:13,snkzf:13,staticnktf:13,snktf:13,dynamicnkzf:13,dnkzf:13,dynamicnktf:13,dnktf:13,muminusexptf:13,mmsetf:13,polynom:13,hayano:13,conden:13,matter:13,keren:13,uemura:13,crook:13,cywinski:13,turner:13,harshman:13,noak:13,kalviu:13,oxford:13,simplifi:13,formula:13,ident:13,compact:13,difficulti:13,simultan:13,address:13,funx:13,complic:13,dictionari:13,libmylibrari:13,tmyfunct:13,auxiliari:13,arithmet:13,divis:13,sin:13,tan:13,aco:13,asin:13,atan:13,cosh:13,sinh:13,tanh:13,acosh:13,asinh:13,atanh:13,exp:13,sqrt:13,pow:13,parx:13,par5:13,mapi:13,denot:13,frac1:13,shorten:13,logic:13,fire:13,addt0:13,rrf_freq:13,rrf_pack:13,rrf_phase:13,exact:13,pie3:13,particular:13,run_file_nam:13,record:13,digress:13,musrfulldatapath:13,colon:13,smith:13,lem07_his_2018:13,musrfulldatapathtoken:13,runnam:13,ext:13,lem07_2018_rb1_npp:13,d2007:13,deltat_pta_gps_2650:13,d2010:13,deltat_tdc_gpd_8472:13,mue1:13,beauti:13,muminu:13,t0addrun1:13,t0addrun2:13,t0addrun1forward:13,t0addrun1backward:13,t0addrun2forward:13,t0addrun2backward:13,sum:13,onlin:13,angl:13,nanosecond:13,fun3:13,transfer:13,ten:13,fgb:13,lgb:13,larger:13,direct:13,span:13,meaningless:13,simplex:13,batch:13,anywher:13,contour:13,mnplot:13,optimum:13,list_of_param_to_be_fix:13,restor:13,freq1:13,freq2:13,complex:13,fit_rang:13,flavor:13,n00:13,n01:13,n10:13,n11:13,nn0:13,nn1:13,inlin:13,scale_n0_bkg:13,fals:13,print_level:13,footnot:13,bigger:13,phd:13,thesi:13,ubc:13,range_for_phase_correct:13,nsec:13,min:13,sub_rang:13,view_pack:13,logx:13,logarithm:13,logi:13,khz:13,par4:13,downward:13,upward:13,unwant:13,rid:13,filter:13,kaiser:13,fail:13,tricki:13,compon:13,ideal:13,uncontrol:13,ghost:13,imperfect:13,distort:13,dispers:13,fold:13,substanti:13,infer:13,math:13,mathrm:13,theoret:13,rearrang:13,unbin:13,histogramm:13,reserv:13,plug:13,simpler:13,why:13,although:13,declar:13,puserfcnbas:13,evalu:13,cassert:13,cmath:13,namespac:13,constructor:13,destructor:13,needglobalpart:13,"void":13,setglobalpart:13,globalpart:13,uint_t:13,idx:13,globalpartisvalid:13,classdef:13,destroi:13,peculiar:13,ness:13,introductori:13,topic:13,const_correct:13,herein:13,classimp:13,assert:13,arg:13,linkdef:13,tmylibrarylinkdef:13,ifdef:13,"__cint__":13,pragma:13,endif:13,wise:13,attach:13,tmylibrari:13,libtmylibrari:13,sensibl:13,bluish:13,node:13,uf1:13,uf2:13,entiti:13,ineffici:13,associ:13,ufx:13,g_ufx:13,consum:13,abrikosov:13,cycl:13,thu:13,overhead:13,tmyglobalfunct:13,isvalid:13,fvalid:13,fprevparam:13,calcsomethingcpuexpens:13,liklei:13,getwhatisneed:13,privat:13,finvokedglob:13,fidxglob:13,fglobaluserfcn:13,static_cast:13,sorri:13,resiz:13,pointer:13,dynamic_cast:13,retriev:13,pseudo:13,increas:13,safeti:13},objects:{},objtypes:{},objnames:{},titleterms:{acknowledg:0,any2mani:[1,13],univers:1,"\u03bcsr":[1,6,13,7,12],file:[1,8,13,11,5,7,12],format:[7,1,13],convert:1,bugtrack:2,how:3,cite:3,musrfit:[8,10,4,13,9,11,5,3],welcom:4,document:[12,4],indic:4,tabl:4,msr2data:[13,11,5],program:5,automat:5,process:[11,5],multipl:[11,5],msr:[13,11,5],basic:[7,13,8,5],type:[13,5],usag:[13,8,6,5],run:[7,13,5],list:5,structur:5,option:[10,5],paramet:[8,6,5],global:[13,5],mode:5,gener:[13,5],extract:5,extend:5,known:5,limit:5,graphic:[9,6,5],user:[6,13,5,7,12],interfac:[7,8,6,5],provid:5,musredit:[8,10,5],mupp:6,plotter:6,script:6,summari:6,musrroot:7,extens:[7,13],open:7,some:7,concern:7,root:[7,10],inform:7,contain:7,runhead:7,runinfo:7,overview:7,tmusrrunhead:7,concept:7,header:7,write:7,read:[7,11],valid:7,requir:[7,10],detectorinfo:7,sampleenvironmentinfo:7,magneticfieldenvironmentinfo:7,beamlineinfo:7,exhaust:7,tree:7,includ:7,everyth:[7,10],tmusrrunphysicalquant:7,possibl:7,represent:7,gui:8,base:8,introduct:[12,8,13],avail:[13,8],execut:[13,8],configur:[13,8],musrgui:[8,10],musredit_startup:8,xml:[12,8,13],featur:8,musrwiz:8,theori:[13,8],"function":[12,8,13],map:[13,8],fit:[13,8,11,9],info:8,creat:8,musrstep:8,set:[9,10],high:9,speed:9,gpu:[13,9],tesla:9,k40c:9,nvidia:9,driver:9,instal:[9,10],cuda:9,via:[9,10],automak:[9,10],cmake:[9,10],amd:9,card:9,radeon:9,"390x":9,app:9,softwar:[9,10],develop:9,kit:9,sdk:9,enabl:[13,9],opencl:[13,9],support:[13,9,10],maco:[9,10],differ:10,platform:10,oper:10,system:10,restrict:10,gnu:10,linux:10,nexu:10,build:10,last:10,step:10,obsol:10,check:10,window:10,cygwin:10,potenti:10,problem:10,mac:10,macport:10,packag:10,from:10,sourc:10,environ:10,variabl:10,fink:10,obsolet:10,tutori:11,singl:[13,11],histogram:[13,11],determin:11,data:[12,11],rang:11,musrt0:[13,11],model:[12,11],view:11,musrview:[13,11],further:11,asymmteri:11,lib:12,meissner:12,profil:12,vortex:12,lattic:12,relat:12,bmw:12,libfitpofb:12,dimension:12,london:12,state:12,isotrop:12,superconductor:12,bulk:12,field:12,distribut:12,mix:12,startup:12,nonloc:12,superconduct:12,screen:12,analyz:12,"\u03b2":12,nmr:12,bnmr:12,libbnmr:12,liblineprofil:12,manual:13,kei:13,shortcut:13,musrft:13,msr2msr:13,dump_head:13,musrfit_startup:13,descript:13,titl:13,fitparamet:13,block:13,command:13,fourier:13,plot:13,statist:13,rrf:13,asymmetri:13,neg:13,muon:13,non:13,without:13,object:13,access:13,technic:13,framework:13},envversion:43})
\ No newline at end of file
+Search.setIndex({filenames:["acknowledgement","any2many","bugtracking","cite","index","msr2data","mupp","musr-root","musredit","setup-dks","setup-standard","tutorial","user-libs","user-manual"],titles:["Acknowledgements","any2many - a Universal \u03bcSR-file-format converter","Bugtracking","How to Cite <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt>?","Welcome to the musrfit documentation!","msr2data - A Program for Automatically Processing Multiple <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt> msr Files","mupp - \u03bcSR Parameter Plotter","MusrRoot - an Extensible Open File Format for \u03bcSR","<tt class=\"docutils literal\"><span class=\"pre\">musredit</span></tt>: the GUI Based Interface to <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt>","Setting up <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt> / <tt class=\"docutils literal\"><span class=\"pre\">DKS</span></tt>: High Speed Fitting with GPU&#8217;s","Setting up <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt> on Different Platforms","Tutorial for <tt class=\"docutils literal\"><span class=\"pre\">musrfit</span></tt>","Documentation of user libs (user functions)","User manual"],terms:{"\u03b1":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03b2":[7,5,11,0,3,8,1,9,10,6],"\u03b4":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03b7":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03b5":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03b3":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03b9":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03ba":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c7":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03bb":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03bc":[4,7,5,11,6,13,3,8,1,9,10,12,0],"\u03bd":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03bf":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c9":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c0":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c6":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c8":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c1":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c2":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c3":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c4":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03b8":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03c5":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03be":[7,5,11,0,13,3,8,1,9,10,12,6],"\u03b6":[7,5,11,0,13,3,8,1,9,10,12,6],bastian:0,wojek:[5,3,0],veri:[7,11,8,13,10,0],much:[7,0,8,13,6],indebt:0,bmw:0,rigor:0,test:[10,8,0],musrfit:0,mani:[7,5,8,13,10,12,0],suggest:[5,10,0],contribut:[11,12,0,13],largest:0,part:[7,11,3,8,13,10,12,0],user:0,manual:[11,5,8,9,10,0],which:[7,5,11,0,8,13,9,10,12,6],make:[7,8,13,9,10,0],access:[7,8,9,10,0],broader:0,audienc:0,thank:0,uldi:0,locan:[9,3,0],work:[7,5,8,13,9,10,12,0],enabl:0,gpu:[3,0],support:[8,0],kind:[7,12,0],calm:0,extrem:0,compet:0,wai:[7,5,11,0,8,13,9,10,12,6],deal:[7,11,13,9,10,12,0],project:0,well:[11,5,13,9,12,0],chao:0,physicist:0,think:0,admir:0,allow:[7,5,13,8,1,9,10,12,6],most:[7,5,13,1,9,10,12],from:[7,5,8,1,9,6],other:[7,11,13,1,9,10,6],detail:[7,11,13,8,1,9,10,12],descript:[7,5,11,8,1,9,10],see:[7,5,11,13,8,1,9,10,12,6],here:[7,5,11,13,8,1,9,10,6],report:2,bug:[8,2],request:[2,11,13,10,6],"new":[2,7,5,11,8,13,10],featur:2,improv:[10,12,2],pleas:[2,7,5,11,3,13,10,12],bitbucket:[10,2,13],repo:[9,10,2],prefer:[10,8,2,13],send:[2,13],mail:2,suter:[9,3,2],psi:[2,7,11,8,13,9,10,12],sinc:[7,5,11,3,13,9,10],quit:[7,3,8,13,10],some:[5,3],effort:3,develop:[3,8],mainten:[7,3],packag:[7,3],you:[7,3,8,13,9,10,6],should:[7,5,11,3,8,13,9,10,12,6],least:[11,5,3,13,10],your:[5,3,8,13,9,10],"public":[12,3,10,13],have:[7,5,11,3,8,13,9,10,12],analyz:[7,3,9,11],data:[7,5,3,8,9,10,6],even:[7,5,3,13,10],better:[5,3,13],cours:[5,3,10,13],properli:[9,5,3,13],refer:[7,11,3,8,13,9,10,12],given:[7,5,11,3,8,13,9,10,12,6],beneath:[3,8],free:[7,3,8,13,10,12],platform:[9,3],independ:[3,12,13],framework:[7,3,8,9,10],analysi:[7,5,11,3,13,9,10,12],physic:[7,3,9],procedia:3,http:[7,3,8,13,9,10,12],doi:3,org:[3,10],phpro:3,high:[7,3],speed:3,version:[7,3,8,13,9,10,12,6],util:[7,3,13,9,10],"case":[7,5,11,3,8,13,9,10,12,6],thi:[7,5,11,3,8,13,9,10,12,6],also:[7,5,11,3,8,13,9,10,12,6],add:[7,5,11,3,8,13,9,10,6],follow:[7,5,11,3,8,13,9,10,12,6],citat:3,adelmann:3,dynam:[9,3],kernel:[9,3],schedul:[9,3],comput:[9,3,10],commun:3,cpc:3,real:[11,3,13,9,10],time:[7,11,3,8,13,9,10,12,6],paramet:3,fit:[7,5,3,6],imag:[11,3,13],reconstruct:3,graphic:3,process:3,unit:[7,3,11,13],conf:[9,3,10],proc:3,jpscp:3,tutori:[],singl:[7,5,8,9,10],histogram:[7,9,8],asymmteri:[],introduct:[],avail:[7,5,6],execut:[],configur:[],basic:[],usag:[],msr:[],type:[],"function":5,technic:[],lib:[9,10],meissner:[],profil:[9,10],vortex:[],lattic:[],relat:[7,10,8],nonloc:[],superconduct:[],screen:10,nmr:[],bnmr:[],set:[7,5,8,6],differ:[7,5,8,9,6],oper:[7,9,8,6],system:[7,9],softwar:7,requir:[],restrict:[],gnu:[],linux:9,window:8,mac:[],maco:[],tesla:[],k40c:[],nvidia:[],amd:[],card:[],radeon:[],"390x":[],opencl:[],musredit:[],gui:6,base:[7,5,6],interfac:[],musrwiz:[],musrstep:[],mupp:5,plotter:[],script:[],summari:[],msr2data:[],program:[],automat:[],multipl:[],option:[],global:[],mode:[],known:[],limit:[],provid:[],musrroot:[],extens:[5,6],open:6,concern:[],root:6,tmusrrunhead:[],concept:[],runinfo:[],detectorinfo:[],sampleenvironmentinfo:[],magneticfieldenvironmentinfo:[],beamlineinfo:[],exhaust:[],tree:[],includ:5,everyth:[],tmusrrunphysicalquant:[],possibl:[5,6],represent:[],index:[5,4,13],search:[10,4,13],page:[4,7,11,8,9,10],origin:[5,12,8,13],written:[7,5,11,8,13,12],implement:[7,5,8,13,9,10,12],purpos:[11,5,10,13],input:[11,5,8,13],same:[7,5,11,13,9,10,12,6],summar:[11,5],result:[7,5,11,8,13,12],either:[11,5,8,13,10,12,6],triumf:[11,5,8,13],column:[7,5,11,8,13],ascii:[11,5,8,13,12],essenti:[7,5,8,13],collect:[7,5,11,8,13,10,12,6],old:[5,10,13],abridg:5,produc:[11,5,10,13],can:[7,5,11,8,13,9,10,12,6],view:[5,8,6],instanc:[7,5,13,10,6],howev:[11,5,13,9,10],thei:[7,5,11,13,9,10],complet:[11,5,9,10,12],backward:[7,5,13],compat:[9,5,10,13],languag:5,name:[7,5,11,8,13,9,10,12,6],longer:5,than:[7,5,11,8,13,10],five:[11,5],six:5,charact:[5,13],order:[7,5,13,9,10,12],establish:5,need:[7,5,11,8,13,9,10,12],ensur:[5,13],correct:[11,5,8,13,10],length:[7,5,12],apart:[5,10,12],numer:[5,10,12],might:[7,5,8,13,10,12,6],principl:[5,10,12],four:5,call:[7,5,11,8,13,10,12,6],suppli:[9,5,12,13],number:[7,5,11,8,13,9,10,12,6],firstrunno:5,lastrunno:5,interv:[5,13],specifi:[7,5,11,8,13,10,12],through:[7,5,11,13,10,12],first:[7,5,11,8,13,9,10,12,6],last:[7,5,8],condit:[5,12],necessari:[7,5,11,8,13,10],runlist:[5,13],where:[7,5,11,8,13,9,10,12,6],combin:[7,5,11,8,13],run0:5,run1:[5,13],run2:[5,13],runn:5,rang:[5,8],step:[7,5,9,8],sequenc:[11,5,10,13],posit:[7,5,11,13],integ:[7,5,13],etc:[7,5,8,13,9,10],runlistfilenam:5,contain:5,extern:[7,5,13,10,12],pass:[5,8,13],below:[7,5,11,13,10,12],all:[7,5,11,8,13,9,10,6],mandatori:[7,5,12,13],right:[7,5,11,13,10,12],after:[7,5,11,8,13,9,10],mean:[7,5,11,8,13,9,10,12,6],becom:[5,10],clear:[7,5,8,13],give:[7,5,11,13,10],exampl:[7,5,11,8,13,10,12,6],"_tf_h13":5,out:[7,5,11,8,13,9,10,6],chang:[5,8,13,9,10],"8472_tf_h13":5,"8473_tf_h13":5,"8474_tf_h13":5,"8470_tf_h13":5,directori:[7,5,11,8,13,9,10,12],put:[5,10,8,13],var1:5,var2:5,var3:5,comment:[7,5,8,13,9,10,6],empti:[5,8,6,13],line:[7,5,11,8,13,10,12,6],determin:[5,10,8],label:[7,5,8,13,12,6],present:[7,5,11,8,13,9,10,12,6],preced:5,mention:[7,5,13,10,12],togeth:[7,5,11,8,13,10],abov:[7,5,11,8,13,9,10,12,6],output:[11,5,8,13,12,6],onli:[7,5,11,8,13,9,10,12,6],newli:[11,5,8],creat:[7,5],did:[5,10],exist:[5,10,13],befor:[7,5,11,8,13,9,10,12],invok:[5,8,6,13],were:[7,5,8,13],alreadi:[5,8,13,9,10],would:[7,5,11,8,13,9,10,12,6],append:[5,10,13],been:[7,5,11,8,13,10,12],header:5,block:[11,5,8,10,12],forc:[5,13],suppress:5,nohead:[5,8],shall:[7,5,11,8,13,10,12],seen:[7,5,11],later:[11,5,10,13],like:[7,5,8,13,9,10,12,6],behavior:[5,13],ani:[7,5,11,8,13,9,10],simpl:[11,5,13,10,12],"default":[5,8,13,9,10],dat:[11,5,8,13,12,6],delet:[7,5],inform:5,both:[5,10,12,13],none:[11,5,8,13],write:5,sole:[5,13],assum:[7,5,11,8,13,9,10,12],nosummari:[5,8],attempt:5,read:5,addit:[7,5,11,8,13,9,10,12],temperatur:[7,5,11,13,6],appli:[7,5,11,13,10,12],magnet:[7,5,12,8],field:[7,5,11,8,9,6],paramlist:5,param:[5,8,6,13],select:[7,5,11,8,13,9,10,6],"export":[11,5,13,9,10],startno:5,endno:5,space:[5,10,12,13],separ:[11,5,8,13,10],outputfilenam:[5,13],instead:[5,13,9,10,12,6],equal:[11,5,13],insensit:5,addition:[11,5,8,13,10],"final":[11,5,13,10,12],templat:[11,5,8,13],perform:[7,5,11,8,13,10,6],mlog:[5,8,13],subsequ:[5,13],chain:[5,10,8],exclam:5,mark:5,without:[5,8,9,10,12,6],keep:[7,5,8,13],mn2:[5,13],done:[7,5,11,13,9,10,12,6],ignor:[5,6,13],titl:[7,5,11,8],illustr:[5,13],few:[7,5,8,13,10],explan:[5,13],oabc:5,"8400_tf_h13":5,"8460_tf_h13":5,abc:5,about:[7,5,11,13,10],"_zf":5,def:5,"8472_zf":[5,8],"8500_zf":5,"8502_zf":5,"8503_zf":5,"8504_zf":5,"8507_zf":5,oghi:5,ouput:5,ghi:5,take:[11,5,13,10,12],"8471_tf_h13":5,"8475_tf_h13":5,bestdata:5,"8476_tf_h13":5,"8477_tf_h13":5,"8478_tf_h13":5,"8479_tf_h13":5,describ:[7,5,11,8,13,9,10,12],anoth:[7,5,8,13,6],each:[7,5,11,13,10,12,6],defin:[7,5,11,8,13,10,12,6],common:[5,10,13],specif:[7,5,11,8,13,10,12],when:[7,5,11,8,13,10,12],obtain:[7,5,12],valid:5,conjunct:[5,10,12,13],invoc:[5,13],state:[11,5],idea:[7,5,11,13],basi:5,identifi:[5,13],tag:[11,5,8,13,9,10,12,6],current:[7,5,8,13,9,10,12,6],"0xu":5,digit:[5,13],lead:[7,5,8,13,12],zero:[7,5,11,8,13],end:[7,5,11,8,13,10,6],alpha0123:5,alpha00123456:5,fitparamet:[11,5,8],exemplari:[5,13],"8472_exampl":5,could:[5,8,13,9,10,12,6],therefor:[11,5,13,10,12],look:[7,5,8,13,9,10,12,6],valu:[7,5,11,8,13,9,10],pos_error:[11,5,13],boundari:[11,5,8,13,12],phase:[11,5,8,13,12],asy8472:5,rate8472:5,treat:[5,10],wherea:[5,8,13],normal:[11,5,10,13],within:[7,5,11,8,13,10,12,6],appear:[5,13],explicitli:[5,8,13],theori:5,those:5,met:5,"try":[5,10,13],substitut:[11,5,10,13],them:[7,5,11,8,13,12],map:[7,5],accordingli:[11,5,10,6],"_exampl":5,global_exampl:5,alwai:[7,5,12,13],start:[7,5,11,8,13,9,10,6],asy8471:5,rate8471:5,asy8470:5,rate8470:5,show:[7,5,11,8,13,6],reorgan:5,begin:[7,5,10,13],copi:[5,10,8,13],found:[7,5,11,8,13,9,10,12],dure:[5,13,10,12,6],affect:5,occurr:[5,10],awar:[5,10,13],fact:[5,10],propag:5,model:[5,10],usual:[5,12],store:[7,5,8,10,12],reach:[5,13],goal:[5,13],obei:[5,13],certain:[5,12],rule:[7,5,8,13],match:[5,13],accord:[11,5,8,13,10],achiev:[11,5,10],easili:[9,5,10,8],shown:[7,5,11,8,13,6],globalfit:5,relev:[7,5,11,8,13],pre:[5,8],afterward:[7,5,13,9,10,12,6],special:[7,5,10,13],replac:[9,5,10,13],review:5,activ:[5,10,12,8],choos:[11,5,8,13,10,12],keyword:[5,13],onerunfit_exampl:5,onerunfit:5,everi:[5,10,6,13],similar:[5,10],explain:[7,5,11,8,13,9,10,12],moment:[7,5,10,12],peopl:[7,5,10],cannot:[5,12,13],behav:[5,12],integr:[5,10,12],filenam:[7,5,13],rightmost:5,highest:[5,10],treatabl:5,statist:[11,5,8],itself:[11,5],more:[7,5,11,8,13,9,10,6],creativ:5,care:[5,10,13],addrun:[5,13],statement:[5,13],simpli:[5,10,13],probabl:[7,5,10],what:[11,5,13,9,10,12],two:[7,5,11,8,13,10,12],success:[7,5,11,13],encount:5,actual:[5,10,12,13],measur:[7,5,11,8,13,12,6],introduc:[7,5,11,13],reason:[11,5,13,9,10],shape:[5,12,13],design:[5,10],especi:[7,5,13,9,10,12],manipul:[5,8,13],front:[7,5,11,8],offer:[11,5,13],almost:[5,8,13],self:[5,8],explanatori:[5,8],depict:[5,13],under:[7,5,8,13,9,10,6],stai:5,enter:[9,5,10,8],otherwis:[9,5,10,13],serv:[11,5,13],second:[11,5,8,13,10,12],noth:[7,5,8,13],correspond:[7,5,11,8,13,10,6],littl:[8,6,13],helper:[7,10,8,6],quickli:[9,6],plot:[7,11,8,6],handl:[7,8,13,10,12,6],heavili:[12,6],inspir:6,via:[7,8,6],command:[11,8,9,10,12,6],directli:[7,8,13,10,6],typic:[8,13,9,10,6],load:[12,6],dialog:[8,6],tri:[10,6,13],fly:[11,6],drag:[11,6],over:[10,6,13],axi:[7,11,13,12,6],wish:[6,13],click:[8,6,13],analog:6,remov:[6,13],often:[10,8,6,13],compar:[9,10,6,13],trend:6,hold:[7,6,13],energi:[7,12,6],scan:[6,13],now:[11,13,9,10,6],interest:[10,6,13],ditto:6,less:[10,6,13],error:[7,11,8,13,9,10,12,6],prone:[9,8,6],quicker:[6,13],button:[11,8,6,13],mupp_plot:6,applic:[8,13,9,10,12,6],refresh:6,reload:[8,6],beamtim:6,grow:6,task:6,mous:[6,13],gambl:6,futur:[10,8,6],plane:6,help:[8,13,9,10,6],cmd:[10,6],manner:[10,6],updat:[11,13,9,10,6],web:[7,8,13,10,6],interact:[11,12,6,13],figur:[7,6,13],loadpath:6,dir:6,path:[7,11,8,13,9,10,6],bash:[10,6],variabl:6,home:[7,8,13,9,10,12,6],accept:[8,6,13],coll:6,selectal:6,carri:[10,6,13],ybco:6,"40nm":6,t5k:6,fc150mt:6,escan:6,addx:6,addi:6,savepath:6,save:[7,11,8,13,10,12,6],place:[11,10,6,13],macro:6,fln:[6,13],txt:[10,6],t30k:6,t60k:6,t120k:6,fieldvsenergi:6,pdf:[6,13],"true":[7,12,6,13],best:[7,13,10,12,6],ever:[7,6],thie:6,labl:6,until:[7,11,13],bulk:7,instrument:[7,8,13],bin:[7,11,8,13,10],fix:[7,11,8,13],binari:[7,10],rather:[7,10,8,13],stringent:7,lem:[7,12,13],cern:[7,10,13],tightli:7,tailor:7,situat:[7,10,13],unsatisfactorili:7,henc:[7,11,13,9,10],decid:[7,10,13],move:[7,11,13],forward:[7,9,11,13],acquisit:7,mida:7,respons:[7,9,13],build:[7,9],decai:[7,11,13],easi:[7,8],object:[7,10],th1f:7,orient:[7,12],mine:7,frame:[7,9,13],tfile:7,eas:[7,10,13],understand:[7,13],upcom:[7,10],definit:[7,11,13],thing:[7,8,13,9,10],check:[7,9,8],guid:[7,9,13],organ:[7,8,13],similarli:[7,13],browser:7,inspect:7,tbrowser:7,deriv:[7,13],tobject:7,small:[7,8,13,9,10,12],subset:[7,13],tfolder:7,top:[7,10],level:[7,13],tobjarrai:7,tobjstr:7,content:[7,10,13],form:[7,11,13,9,10,12],box:[7,9,8],entri:[7,13],sketch:[7,13],histo:[7,11,8,13,10],decayanamodul:7,hdecay001:7,hdecay002:7,scanamodul:7,hsampletemperatur:7,hsamplemagneticfield:7,detector001:7,detector002:7,hdecayxxx:7,xxx:7,"int":7,"03d":7,notat:[7,13],"class":[7,12,13],folder:[7,10],next:[7,8,13,9,10,12],section:[7,10,13],slow:7,control:[7,9,13],sampl:[7,12,9,11],versu:7,again:[7,8,13,9,10],meta:7,minim:[7,11,13,10,12],bracket:7,item:[7,13],detector:[7,11,8,13,12],environ:[7,8],beamlin:[7,11,8,13],elabor:[7,9],word:7,sub:[7,10,11,13],intern:[7,8,13],tstring:7,git:[7,10,9,13],url:7,xsd:7,wrote:7,nemu_analyz:7,deltat_tdc_gps_4295:7,int_t:[7,13],iso:7,date:[7,11,13],stop:7,durat:7,sec:[7,13],laboratori:7,muon:[7,11,8,10,12],beam:7,momentum:[7,12,11],mev:7,speci:7,neg:[7,11,8],sourc:[7,9],target:7,low:[7,12,13],setup:[7,10,9,13],cf1:7,wxy:7,resolut:[7,12],redgreen:[7,13],offset:[7,13],tintvector:7,except:[7,10,8,13],shortli:[7,13],discuss:[7,9,8,13],experi:[7,13],stimuli:7,electr:7,off:[7,10,13],doubl:[7,13],distinguish:7,easier:[7,10],let:7,sai:7,red:[7,11,13,9,10],green:[7,11,13],browsabl:7,string:[7,10,8,13],tobjstringv:7,quantiti:7,repres:[7,11,13],properti:[7,13],estim:[7,12,8,13],demand:[7,13],depend:[7,11,8,13,9,10,12],musrrootv:7,mock:7,print:[7,8,13],notic:[7,8,13],find:[7,10,9,8],encod:[7,8,13,10,12],price:7,pai:7,shade:7,"import":[7,13],approach:[7,10,13],standard:[7,10,9,13],"abstract":[7,13],text:[7,11,8,13],though:[7,10,8],clean:[7,10,9],lot:[7,13],"2nd":7,slightli:[7,9,8,13],advantag:[7,10,8,13],maintain:7,expand:7,classifi:7,group:[7,10,8,13],previou:[7,13],"float":7,point:[7,11,8,13,10,12],double_t:[7,13],tstringvector:7,tdoublevector:7,themselv:[7,12],vector:[7,12,13],code:[7,11,13,9,10,12],snippet:[7,13],reader:7,routin:[7,10,12,13],convers:[7,13],write_musrroot_runhead:7,full:[7,10,11,13],concentr:7,just:[7,13,9,10,12],prop:7,further:[7,10,8],down:[7,11,8,13],deltat_tdc_gps_2871:7,come:[7,10,8],overload:7,pathnam:7,method:[7,13],tdc:[7,13],cf3:7,mrh_undefin:7,strang:7,fed:[7,13],whole:7,someth:[7,10,9,13],recreat:[7,8],iszombi:7,"return":[7,13],info:7,fillfold:7,close:[7,10,8,13],read_musrroot_runhead:7,getobject:7,cerr:[7,13],endl:[7,13],couldn:[7,13],get:[7,8,13,9,10],closefil:7,extractal:7,decod:7,fill:[7,11,13],getter:7,bool_t:[7,13],ival:7,cout:7,els:[7,10,8,13],getvalu:7,geterror:7,getunit:7,getdemand:7,getdescript:7,mechan:[7,13],inde:7,minimum:7,scheme:7,musrrootvalid:7,recurs:7,pars:7,temporari:7,xml:7,ampl:[7,13],parser:[7,10],hand:[7,10,13],decent:7,book:7,libxml2:[7,10],becaus:[7,8],suppos:[7,10,13],against:7,schema:7,lmu:[7,8],semant:7,preform:7,cross:[7,10,13],facil:[7,8,13],musrrootlem:7,poitiv:7,wew:7,hdecay023:7,detector023:7,potenti:7,discontinu:7,"break":7,element:7,left:[7,12,8],npp:[7,11,8,13,10],spectromet:[7,9,11,13],good:[7,8,13,9,10],enough:[7,10,13],cryo:7,cryostat:7,oven:7,konti:7,pim3:[7,11,13],hypothet:7,light:7,per:[7,8,13],bottom:7,split:[7,10,13],mind:7,symbol:[7,10],hdecay003:7,hdecay004:7,hdecay007:7,hdecay008:7,hdecay011:7,hdecay012:7,hdecay013:7,hdecay014:7,hdecay017:7,hdecay018:7,hdecay021:7,hdecay022:7,hdecay024:7,hdecay027:7,hdecay028:7,hdecay031:7,hdecay032:7,hdecay033:7,hdecay034:7,hdecay037:7,hdecay038:7,continu:7,"switch":[7,8,13,9,10],jump:[7,13],cpp:[7,13],"00z":7,nemu:[7,10,13],lem12_his_0234:7,said:7,detector038:7,insert:7,x123:7,perp:7,spin:[7,12,11,13],mue4:[7,8,13],scalerinfo:7,runsummari:7,wed:7,oct:7,lco:7,wtf:7,kev:[7,12],ledb:7,buc:7,edit:[7,10,11,8],euc:7,event:[7,11],event_0:7,mcp1:7,event_1:7,mcp2:7,event_2:7,lemusr:7,problem:7,deviat:7,hereaft:7,snip:7,somewher:[7,10,8],token:[7,13],val:[7,13],err:7,cf4:7,cf5:7,editor:[11,10,8],suit:[11,12,8,13],intend:[10,8,13],eventu:[11,10,8],drop:[10,8],outdat:[10,8,13],earli:[8,13],anymor:[10,8],still:[8,13,9,10,12],urg:8,strongli:[10,8],recommend:[10,12,8],shell:[10,8,13],tab:[8,13],startup:8,displai:[10,12,8,13],locat:[11,8,13,10,12],proof:8,exec_path:8,path_to_exec:8,musrview:[10,8],musrt0:8,insid:[10,12,8,13],default_save_path:8,save_path:8,msr_default_file_path:8,msr_def_path:8,timeout:[8,13],canva:[11,8,13],keep_minuit2_output:8,flag:[8,13],minuit2:[10,8,13],kept:[8,13],dump_ascii:8,dump:[8,13],dump_root:8,title_from_data_fil:8,chisq_pre_run_block:8,chisq:[11,8,13],estimate_n0:8,procedur:[11,8,13,9,10,12],musrview_show_fouri:8,fourier:[11,10,12,8],transform:[11,8,13,10,12],domain:[11,8,13],musrview_show_avg:8,averag:[12,8,13],power:[11,8,13,9,10],spectra:[8,13],enable_musrt0:8,font_set:8,font:[10,8],font_nam:8,font_siz:8,size:[8,13],msr_file_default:8,institut:[11,8,13],inst:8,ral:8,jparc:8,file_format:[8,13],nexu:[9,8],musr:[8,13],ppc:[11,8,13],mdu:[11,8,13],wkm:[11,8,13],mud:[11,8,13],lifetime_correct:8,lifetimecorrect:[8,13],msr2data_default:8,tick:8,chain_fit:8,write_data_head:8,ignore_data_header_info:8,write_column_data:8,create_msr_file_onli:8,fit_onli:8,global_plu:8,recreate_data_fil:8,open_file_after_fit:8,experienc:[10,8],who:8,help_sect:8,variou:[10,8,13],messag:[8,13],musr_web_x:8,link:[10,8,13],main:[11,10,8],musrft:[11,8],func_pixmap_path:8,pix_path:8,latex:8,pixmap:8,visual:[11,8],theory_funct:8,syntax:[8,13],func:8,menu:[11,10,8,13],pictur:8,utf:[10,12,8,13],xmln:[8,13],html:8,usr:[10,8],local:[9,10,12,8],share:[9,10,8,13],doc:[11,10,8,13],chisq_per_run_block:8,recent_fil:8,path_file_nam:8,musr_web_main:8,musr_web_titl:8,thetitl:8,musr_web_paramet:8,thefitparameterblock:8,musr_web_theori:8,thetheoryblock:8,musr_web_funct:8,thefunctionsblock:8,musr_web_run:8,therunblock:8,musr_web_command:8,thecommandsblock:8,musr_web_fouri:8,thefourierblock:8,musr_web_plot:8,theplotblock:8,musr_web_statist:8,thestatisticblock:8,musr_web_msr2data:8,musr_web_musrft:8,a_2:8,"3_musrft":8,monospac:8,latex_imag:8,asymmetri:[11,12,8],png:[8,13],statgsskt:[8,13],rate:[11,12,8,13],"static":[10,12,8],gauss:[11,12,8,13],respect:[11,8,13,10,12],bar:[8,13],keyboard:[11,8],shortcut:[11,8],scratch:8,too:[10,8],priori:8,knowledg:8,calcul:[11,8,13,10,12],log:[12,8,13],max:[8,13],likelihood:[12,8,13],kei:[10,8],alt:8,equival:[10,8,13],mai:[10,8,13],chosen:[10,8,13],swap:[8,13],vice:[8,13],versa:[8,13],adjust:[11,10,8,13],initi:[11,8,13,10,12],fitter:8,own:[8,13],docu:[9,8,13],raw:[8,13],dump_head:8,stage:[8,13],wand:8,coupl:[9,8,13],dialogu:8,briefli:8,explicit:[8,13],year:[9,8,13],pull:[10,8],choosen:8,rrf:[9,8],minu:8,transvers:[11,8,13],longitudin:8,choic:[10,8,13],question:8,ask:[10,8],correctli:[11,10,8,13],proper:[9,8,13],prompt:[9,10,8,13],peak:[12,8,13],pop:8,disadvantag:8,freeli:8,custom:[8,13],cost:8,yourself:8,stand:[9,8],whatev:[9,8],press:[11,8,13],syntact:8,appropri:[9,8],previous:8,handi:8,furthermor:[10,8,13],pack:[11,10,8,13],minuit:[12,8,13],reset:[8,13],sometim:[8,13],went:[10,8],wrong:8,leav:8,far:[8,13],iter:[12,8,13],individu:[8,13],tediou:[12,8],popup:8,asym:8,uncheck:8,unselect:8,modifi:[12,8],degre:[11,8,13],cancel:8,anyth:[8,13],scale:[8,13],factor:[8,13],absolut:[11,10,8,13],explor:[9,10],hal:[9,13],memo:[9,13],rotat:[9,11,13],tremend:[9,10],muonium:[9,13],appl:[9,10],cpu:[9,10,13],straight:9,multi:[9,10,13],thread:[9,10,13],doesn:9,openmp:[9,10,13],shop:9,bui:9,gamer:9,sure:[9,10,13],server:[9,10],suffici:[9,12],strong:[9,11,13],yet:[9,12,11,13],fall:[9,13],back:[9,13],conceptu:9,latest:[9,10],hardwar:9,crunch:9,readi:[9,10,13],acceler:[9,13],termin:[9,10,11,13],lspci:9,grep:[9,10],corpor:9,gk110bgl:9,rev:[9,12,13],recogn:9,download:[9,10],center:[9,12],hat:[9,10],enterpris:9,rhel:[9,10],rpm:[9,10],diag:9,rhel7:9,x86_64:9,conflict:9,nouveau:9,reboot:9,machin:[9,10,12],omit:[9,10,13],thin:[9,12],host:9,incorpor:9,paper:9,wiki:9,brief:[9,10],clone:[9,10],got:9,consist:[9,12,13],gitlab:[9,10,13],uldis_l:9,mkdir:[9,10],denable_musr:9,dcmake_install_prefix:[9,10],exec:9,non:[9,12],librari:[9,10,12,13],"super":9,sbin:[9,10],ldconfig:[9,10],ld_library_path:[9,10],launchctl:[9,10],setenv:[9,10],checkout:[9,10],branch:[9,10],dks6:9,soon:[9,10],want:[9,10,13],tell:[9,13],aslib:[9,10],bmwlib:[9,10],prefix:[9,10],rootsi:[9,10],lookup:9,superus:[9,10],ddk:9,disabl:[9,10,13],daslib:[9,10],dbmwlib:[9,10],dnexu:[9,10],vga:9,advanc:9,micro:[9,13],devic:9,inc:9,ati:9,hawaii:9,grenada:9,"290x":9,amdgpu:9,pro:[9,10],unpack:[9,10],tar:[9,10,13],jxvf:9,blabla:9,usermod:9,video:9,technolog:9,materi:9,leverag:9,amp:9,xvjf:9,sdkinstal:9,linux64:9,bz2:[9,13],opt:[9,10,13],amdappsdk:9,note:[9,10,12,13],instruct:[9,10,13],compil:[9,10,13],xcode:[9,10],deliv:9,easiest:9,involv:[9,12],demonstr:10,"while":10,brave:10,virtual:10,encourag:10,gcc:[10,13],tool:[10,13],autoconf:10,libtool:10,toolchain:10,drope:10,releas:[10,13],plan:10,pkg:10,config:10,boost:10,spirit:10,scientif:[10,12,13],effici:[10,12,13],mathemat:[10,13],fftw:10,fast:10,discret:[11,10],toolkit:10,gnome:10,hdf4:[10,13],manag:10,hdf5:[10,13],minixml:10,neutron:10,rai:10,scienc:10,focus:10,seriou:10,distribut:[11,10],fedora:10,debian:10,ubuntu:10,mint:10,opensus:10,nativ:10,microsoft:10,distributor:10,taken:[10,13],dev:10,devel:10,trick:10,never:10,qt4:10,yum:10,gsl:10,qtwebkit:10,qt5:10,epel:10,qtbase:10,qtsvg:10,dpkg:10,apt:10,libboost:10,libgsl:10,libfftw3:10,libqt4:10,libqtwebkit:10,qtbase5:10,libqt5svg5:10,libqt5webkit5:10,everyon:10,know:10,himself:10,doe:[10,13],websit:10,engin:10,mxml:10,hdf:10,libmxml1:10,libmxml:10,libhdf4:10,libhdf5:10,urgent:[10,13],isi:[10,13],safe:[10,13],master:10,repositori:10,github:10,com:10,nexusformat:10,denable_hdf5:10,denable_hdf4:10,denable_mxml:10,sudo:10,flavour:10,legaci:10,incompat:10,guess:[10,13],warn:[10,13],upgrad:10,recompil:10,redhat:10,libx11:10,libxft:10,libxpm:10,libxext:10,systemat:10,term:10,offici:10,root_build:10,dgminim:10,dasimag:10,dmathmor:10,dminuit2:10,dxml:10,root_exec:10,multicor:10,miss:[10,13],told:10,luke_skywalk:10,echo:10,bashrc:10,bash_profil:10,restart:10,onc:[11,10,12,13],proceed:10,recent:[10,13],muonspin:10,root5:10,root6:10,newer:10,dec:10,whether:[10,13],uninstal:10,xarg:10,install_manifest:10,altern:[10,13],autogen:10,prepar:10,successfulli:[10,13],makefil:[10,13],besid:10,fftw3:[10,12],boostinc:10,qt3:10,qt47:10,lib64:10,omp:[10,13],parallel:[11,10,12,13],detect:[11,10],permiss:10,dbnmrlib:10,bnmrlib:10,dqt_based_tool:10,dqt_version:10,auto:10,dtry_openmp:10,core:10,finish:[11,10],musrfitpath:10,musrfit_startup:10,built:[10,13],everth:10,src:10,musredit_qt5:10,qmake:10,fine:10,skip:10,higher:10,uic:10,quick:[10,13],hasn:10,adventur:10,advic:10,wonder:10,occur:10,great:10,gain:10,nice:[10,12],unix:10,revis:[10,13],fulfil:10,abl:10,a2p:10,passwd:10,binutil:10,bison:10,bzip2:10,colorgcc:10,coreutil:10,curl:10,cygutil:10,editright:10,findutil:10,flex:10,adob:10,dpi100:10,dpi75:10,alia:10,bitstream:10,ibm:10,type1:10,sun:10,misc:10,xfree86:10,fontconfig:10,freeglut:10,gawk:10,gcc4:10,fortran:10,gccmakedep:10,gettext:10,ghostscript:10,std:[10,13],giflib:10,gmp:10,groff:10,gzip:10,inputproto:10,jasper:10,jpeg:10,lapack:10,libbz2_1:10,libcharset1:10,libcurl4:10,libfftw3_3:10,libgcc1:10,libgd:10,libgif:10,libgl:10,libgl1:10,libglu:10,libglu1:10,libglut:10,libglut3:10,libgmp:10,libgmp3:10,libgomp1:10,libic:10,libice6:10,libjpeg:10,libjpeg62:10,liblapack:10,libmpfr:10,libmpfr1:10,libncurs:10,libncurses9:10,libosmesa:10,libosmesa7:10,libpng:10,libpng14:10,libreadline6:10,libsm:10,libsm6:10,libssh2_1:10,libstdc:10,libtiff:10,libtiff5:10,libx11_6:10,libxau:10,libxau6:10,libxaw7:10,libxcb:10,xlib:10,libxcursor:10,libxcursor1:10,libxdmcp:10,libxdmcp6:10,libxext6:10,libxfix:10,libxfixes3:10,libxfont:10,libxfont1:10,libxft2:10,libxi:10,libxi6:10,libxkbfile1:10,libxmu:10,libxmu6:10,libxpm4:10,libxrend:10,libxrender1:10,libxt:10,libxt6:10,login:10,makedepend:10,man:10,mpfr:10,nano:10,opengl:10,openssh:10,openssl:10,pdftk:10,perl:10,ping:10,psutil:10,python:10,readlin:10,rebas:10,rgb:[10,13],rsync:10,sed:10,subvers:10,tcltk:10,terminfo:10,unzip:10,vim:10,w32api:10,icon:[11,10,13],xauth:10,xextproto:10,xfontsel:10,xinit:10,xkbcomp:10,xkeyboard:10,xkill:10,xlogo:10,xlsfont:10,xorg:10,xproto:10,xrdb:10,xrefresh:10,xset:10,xterm:10,zip:10,zlib:10,zlib0:10,libqt3support4:10,libqtassistantclient4:10,libqtcore4:10,libqtdbus4:10,libqtdesigner4:10,libqtgui4:10,libqthelp4:10,libqtnetwork4:10,libqtopengl4:10,libqtscript4:10,libqtscripttools4:10,libqtsql4:10,libqtsvg4:10,libqttest4:10,libqtwebkit4:10,libqtxml4:10,libqtxmlpatterns4:10,posix:10,convent:[10,12],hard:10,drive:10,network:10,cygdriv:10,stick:10,had:10,x_yy_z:10,"1_33_1":10,librpc:10,sunrpc:10,track:10,patch1:10,www:[10,12],hdfgroup:10,ftp:10,jpegsrc:10,v6b:10,msweet:10,project3:10,hdf_current:10,precompil:10,xzf:10,root_v5:10,win32gcc:10,due:[10,12,13],visit:10,gminim:10,asimag:10,mathmor:10,accomplish:10,usernam:10,qtdir:10,i686:10,reopen:10,qt56:10,readili:10,startxwinrc:10,status_access_viol:10,ash:10,rebaseal:10,resolv:10,administr:10,privileg:10,extent:10,emploi:10,emphas:10,rout:10,dvd:10,xcodebuild:10,licens:[10,13],x11:10,leopard:10,snow:10,xquartz:10,macosforg:10,trac:10,newest:10,port:10,selfupd:10,remark:[10,13],synchron:10,frequent:10,happen:10,servic:10,firewal:10,svn:10,trunk:10,dport:10,sync:10,pkgconfig:10,qtwebengin:10,past:10,unfortun:10,subject:10,mini:10,michaelrsweet:10,lazi:10,dmg:10,sierra:10,writ:10,root_v6:10,macosx64:10,clang91:10,owner:10,life:[11,10,13],chown:10,chgrp:10,staff:10,exactli:[10,13],wisdom:[10,12],harder:10,adopt:[10,13],parenthes:[10,13],macosx:10,plist:10,doctyp:10,dtd:10,propertylist:10,dict:10,qt3mac:10,stabl:10,crypto:10,unstabl:10,finkcommand:10,boost1:10,nopython:10,shlib:10,libtool2:10,qtwebenginecor:10,qtwebenginewidget:10,bit:10,earlier:10,"1_63_0":10,cpp11:10,circumst:10,finder:10,workaround:10,dyld_library_path:10,mgui:10,differenti:[11,13],diamagnet:[11,12],approxim:11,geometri:11,positron:[11,12],counter:11,precess:11,"3110_tutori":11,conveni:11,underli:11,divid:[11,12],xyz:11,normup:11,bgup:11,phaseup:11,normdown:11,bgdown:11,phasedown:11,normright:11,bgright:11,phaseright:11,asymsig1:11,ratesig1:11,fieldsig1:11,asymsig2:11,ratesig2:11,fieldsig2:11,uncertainti:[11,12],asymmetr:11,lower:[11,13],upper:[11,13],constant:[11,13],background:[11,13],uncorrel:11,three:[11,12,13],remain:11,signal:[11,12,13],holder:11,amplitud:11,depolar:[11,12,13],simplexpo:[11,13],tfieldco:[11,13],map1:[11,13],fun1:[11,13],frequenc:[11,12,13],simplegss:[11,13],fun2:[11,13],predefin:[11,13],multipli:[11,13],sign:11,fun:11,interrel:11,gamma_mu:[11,13],par12:[11,13],par15:11,altogeth:[11,13],deltat_pta_gps_3110:11,fittyp:[11,13],norm:[11,13],backgr:[11,13],map2:[11,13],map3:11,undefin:11,implant:[11,12],exce:11,mino:[11,12,13],mhz:[11,12,13],fourier_pow:[11,13],apod:[11,13],weak:[11,13],medium:[11,13],real_and_imag:[11,13],par3:[11,13],imaginari:[11,13],drawn:[11,13],abscissa:[11,13],ordin:[11,13],use_fit_rang:[11,13],third:[11,12,13],ndf:11,freedom:[11,13],converg:[11,12,13],blue:[11,13],maximum:[11,13],count:[11,13],zoom:[11,13],graph:[11,13],around:[11,13],cursor:[11,13],suitabl:11,repeat:[11,13],proce:11,comma:[11,13],between:[11,12,13],"short":[11,13],conclud:11,attent:[11,12,13],"3111_tutori":11,"3114_tutori":11,"_tutori":11,snapshot:11,dark:11,theme:11,facilit:12,gyromagnet:12,ratio:12,smu:12,outlin:12,literatur:12,reli:12,repeatedli:12,sizabl:12,worth:12,maxim:[12,13],trial:12,deserv:12,effect:[12,13],shift:[12,13],advis:12,prove:12,appreci:12,induct:12,vari:[12,13],dimens:12,incid:12,simul:12,trim:12,arrai:12,total:[12,13],thick:12,solv:12,equat:[12,13],layer:12,account:[12,13],superfluid:12,macroscop:12,dover:12,adjac:12,penetr:12,depth:12,constitu:12,half:12,film:12,userfcn:[12,13],tlondon1dh:12,deg:12,dead:12,tlondon1d1l:12,fraction:[12,13],substrat:12,bilay:12,heterostructur:12,tlondon1d2l:12,trilay:12,tlondon1d3l:12,investig:12,flux:12,probe:12,randomli:12,spatial:12,seri:12,reciproc:12,coeffici:[12,13],coher:[12,13],gaussian:12,cutoff:12,brandt:12,temp:12,phy:[12,13],riseman:[12,13],analyt:12,ginzburg:12,landau:12,yaouanc:[12,13],dalma:[12,13],réotier:[12,13],bessel:[12,13],region:[12,13],triangular:12,grid:12,inter:12,distanc:12,tbulktrivortexlondon:12,tbulktrivortexml:12,tbulktrivortexagl:12,tbulktrivortexngl:12,migrad:[12,13],proven:12,larg:[12,13],futil:12,strategi:[12,13],max_likelihood:[12,13],hess:[12,13],bmw_startup:12,debug:[12,13],one_or_zero:12,deactiv:12,path_to_fil:12,invalid:12,delta_t:12,rest:12,microsecond:12,delta_b:12,resb:12,vortexlattic:12,n_vortexgrid:12,data_path:[12,13],data_path_prefix:12,n_theori:12,invers:12,energy_list:12,energy_label:12,rge:12,expect:[12,13],belong:12,wordsofwisdom:12,trimsp:12,"02_0":12,"03_0":12,"03_6":12,"05_0":12,"05_3":12,relax:[12,13],slr:12,reson:[12,13],lineshap:12,puls:12,evolut:12,salman:12,prl:12,lifetim:[12,13],exponenti:[12,13],exprlx:12,stretch:12,sexprlx:12,expon:[12,13],chemic:12,anisotropi:12,powder:12,mehr:12,solid:[12,13],springer:12,axial:12,symmetr:12,observ:12,paralel:12,perpendicular:12,symmetri:12,anisotrop:12,along:12,loss:12,ellipt:12,linegauss:12,fwhm:12,height:12,lorentzian:12,linelorentzian:12,laplacian:12,linelaplac:12,skew:12,lineskewlorentzian:12,width:[12,13],lineskewlorentzian2:12,convolut:12,powderlineaxiallor:12,powderlineaxialgss:12,powderlineasymlor:12,princip:12,powderlineasymgss:12,gpl:13,philosophi:13,abil:13,fcn:13,sever:13,correl:13,renam:13,msr_file_without_extens:13,msr_file:13,maxlh:13,estimaten0:13,timeout_tag:13,overwrit:13,prevent:13,orphan:13,jam:13,"8472_tf_histo":13,avg:13,graphic_format_extens:13,session:13,"8472_0":13,gif:13,jpg:13,svg:13,xpm:13,"8472_x":13,experiment:13,action:13,canvas:13,toggl:13,spectrum:13,area:13,hair:13,consid:13,beta:13,feed:13,exit:13,"3310_0":13,subtract:13,fopt:13,neither:13,nor:13,pad:13,angular:13,interpret:13,lem15_his_01234:13,rebin:13,fudg:13,elimin:13,sens:13,tweak:13,tdc_hifi_2014_00153:13,mnsi:13,"50k":13,unzoom:13,crosshair:13,gett0frompromptpeak:13,firstgoodbinoffset:13,argument:13,color:13,channel:13,interrupt:13,msr_file_in:13,msr_file_out:13,parc:13,wors:13,aim:13,idf1:13,idf2:13,nexus1:13,nexus2:13,flexibl:13,filenamelist:13,lem10_his_0111:13,lem10_his_0113:13,run3:13,runstart:13,runend:13,rrrr:13,rrrrrr:13,yyyi:13,unless:13,sent:13,stdout:13,compress:13,absent:13,lem10_his_0123:13,lem10_his_0123_v2:13,idf:13,deltat_tdc_gps_:13,d2001:13,deltat_tdc_gps_0123:13,deltat_tdc_gps_0137:13,deltat_tdc_alc_:13,rrr:13,spit:13,psi_gps_:13,psi_:13,"_gps_":13,psi_gps_run_100to117:13,archiv:13,lem10_his_0012:13,rebin25:13,lem10_his_0123_rebin25:13,runno:13,fileformat:13,pta:13,ltf:13,dolli:13,gpd:13,hifi:13,tdc_hifi_2015_00123:13,construct:13,path_to_data:13,write_per_run_block_chisq:13,pearson:13,fourier_set:13,phase_incr:13,phincr:13,increment:13,optim:13,root_set:13,marker_list:13,marker:13,color_list:13,intranet:13,mnt:13,unlik:13,headlin:13,style:13,lower_boundari:13,upper_boundari:13,init:13,alpha:13,asi:13,freq:13,constrain:13,semi:13,par:13,asy1:13,rate1:13,asy2:13,field2:13,rate2:13,whitespac:13,avoid:13,whenev:13,abbr:13,express:13,"const":13,generexpo:13,stg:13,statgssktlf:13,sgktlf:13,dyngssktlf:13,dgktlf:13,statexpkt:13,sekt:13,statexpktlf:13,sektlf:13,dynexpktlf:13,dektlf:13,combilgkt:13,lgkt:13,strkt:13,skt:13,spinglass:13,spg:13,rdanisohf:13,rahf:13,internfld:13,internbsl:13,abragam:13,skewedgss:13,skg:13,staticnkzf:13,snkzf:13,staticnktf:13,snktf:13,dynamicnkzf:13,dnkzf:13,dynamicnktf:13,dnktf:13,muminusexptf:13,mmsetf:13,polynom:13,hayano:13,conden:13,matter:13,keren:13,uemura:13,crook:13,cywinski:13,turner:13,harshman:13,noak:13,kalviu:13,oxford:13,simplifi:13,formula:13,ident:13,compact:13,difficulti:13,simultan:13,address:13,funx:13,complic:13,dictionari:13,libmylibrari:13,tmyfunct:13,auxiliari:13,arithmet:13,divis:13,sin:13,tan:13,aco:13,asin:13,atan:13,cosh:13,sinh:13,tanh:13,acosh:13,asinh:13,atanh:13,exp:13,sqrt:13,pow:13,parx:13,par5:13,mapi:13,denot:13,frac1:13,shorten:13,logic:13,fire:13,addt0:13,rrf_freq:13,rrf_pack:13,rrf_phase:13,exact:13,pie3:13,particular:13,run_file_nam:13,record:13,digress:13,musrfulldatapath:13,colon:13,smith:13,lem07_his_2018:13,musrfulldatapathtoken:13,runnam:13,ext:13,lem07_2018_rb1_npp:13,d2007:13,deltat_pta_gps_2650:13,d2010:13,deltat_tdc_gpd_8472:13,mue1:13,beauti:13,muminu:13,t0addrun1:13,t0addrun2:13,t0addrun1forward:13,t0addrun1backward:13,t0addrun2forward:13,t0addrun2backward:13,sum:13,onlin:13,angl:13,nanosecond:13,fun3:13,transfer:13,ten:13,fgb:13,lgb:13,larger:13,direct:13,span:13,meaningless:13,simplex:13,batch:13,anywher:13,contour:13,mnplot:13,optimum:13,list_of_param_to_be_fix:13,restor:13,freq1:13,freq2:13,complex:13,fit_rang:13,flavor:13,n00:13,n01:13,n10:13,n11:13,nn0:13,nn1:13,inlin:13,scale_n0_bkg:13,fals:13,print_level:13,footnot:13,bigger:13,phd:13,thesi:13,ubc:13,range_for_phase_correct:13,nsec:13,min:13,sub_rang:13,view_pack:13,logx:13,logarithm:13,logi:13,khz:13,par4:13,downward:13,upward:13,unwant:13,rid:13,filter:13,kaiser:13,fail:13,tricki:13,compon:13,ideal:13,uncontrol:13,ghost:13,imperfect:13,distort:13,dispers:13,fold:13,substanti:13,infer:13,math:13,mathrm:13,theoret:13,rearrang:13,unbin:13,histogramm:13,reserv:13,plug:13,simpler:13,why:13,although:13,declar:13,puserfcnbas:13,evalu:13,cassert:13,cmath:13,namespac:13,constructor:13,destructor:13,needglobalpart:13,"void":13,setglobalpart:13,globalpart:13,uint_t:13,idx:13,globalpartisvalid:13,classdef:13,destroi:13,peculiar:13,ness:13,introductori:13,topic:13,const_correct:13,herein:13,classimp:13,assert:13,arg:13,linkdef:13,tmylibrarylinkdef:13,ifdef:13,"__cint__":13,pragma:13,endif:13,wise:13,attach:13,tmylibrari:13,libtmylibrari:13,sensibl:13,bluish:13,node:13,uf1:13,uf2:13,entiti:13,ineffici:13,associ:13,ufx:13,g_ufx:13,consum:13,abrikosov:13,cycl:13,thu:13,overhead:13,tmyglobalfunct:13,isvalid:13,fvalid:13,fprevparam:13,calcsomethingcpuexpens:13,liklei:13,getwhatisneed:13,privat:13,finvokedglob:13,fidxglob:13,fglobaluserfcn:13,static_cast:13,sorri:13,resiz:13,pointer:13,dynamic_cast:13,retriev:13,pseudo:13,increas:13,safeti:13,val0:13,sep:13,val1:13,valn:13,parx0:13,parx1:13,parxn:13,par7:13,par17:13,par22:13,par27:13,par32:13,par37:13,par42:13,par47:13,par52:13,par57:13,par62:13,par67:13,par72:13,par77:13,par82:13,par8:13},objects:{},objtypes:{},objnames:{},titleterms:{acknowledg:0,any2mani:[13,1],univers:1,"\u03bcsr":[7,1,13,12,6],file:[7,5,11,13,8,1,12],format:[7,13,1],convert:1,bugtrack:2,how:3,cite:3,musrfit:[4,11,5,3,8,13,9,10],welcom:4,document:[12,4],indic:4,tabl:4,msr2data:[11,5,13],program:5,automat:5,process:[11,5],multipl:[11,5],msr:[11,5,13],basic:[7,5,8,13],type:[5,13],usag:[5,8,6,13],run:[7,5,13],list:5,structur:5,option:[5,10],paramet:[5,8,6],global:[5,13],mode:5,gener:[5,13],extract:5,extend:5,known:5,limit:5,graphic:[9,5,6],user:[7,5,13,12,6],interfac:[7,5,8,6],provid:5,musredit:[5,10,8],mupp:6,plotter:6,script:6,summari:6,musrroot:7,extens:[7,13],open:7,some:7,concern:7,root:[7,10],inform:7,contain:7,runhead:7,runinfo:7,overview:7,tmusrrunhead:7,concept:7,header:7,write:7,read:[7,11],valid:7,requir:[7,10],detectorinfo:7,sampleenvironmentinfo:7,magneticfieldenvironmentinfo:7,beamlineinfo:7,exhaust:7,tree:7,includ:7,everyth:[7,10],tmusrrunphysicalquant:7,possibl:7,represent:7,gui:8,base:8,introduct:[12,8,13],avail:[8,13],execut:[8,13],configur:[8,13],musrgui:[10,8],musredit_startup:8,xml:[12,8,13],featur:8,musrwiz:8,theori:[8,13],"function":[12,8,13],map:[8,13],fit:[9,11,8,13],info:8,creat:8,musrstep:8,set:[9,10],high:9,speed:9,gpu:[9,13],tesla:9,k40c:9,nvidia:9,driver:9,instal:[9,10],cuda:9,via:[9,10],automak:[9,10],cmake:[9,10],amd:9,card:9,radeon:9,"390x":9,app:9,softwar:[9,10],develop:9,kit:9,sdk:9,enabl:[9,13],opencl:[9,13],support:[9,10,13],maco:[9,10],differ:10,platform:10,oper:10,system:10,restrict:10,gnu:10,linux:10,nexu:10,build:10,last:10,step:10,obsol:10,check:10,window:10,cygwin:10,potenti:10,problem:10,mac:10,macport:10,packag:10,from:10,sourc:10,environ:10,variabl:10,fink:10,obsolet:10,tutori:11,singl:[11,13],histogram:[11,13],determin:11,data:[11,12],rang:11,musrt0:[11,13],model:[11,12],view:11,musrview:[11,13],further:11,asymmteri:11,lib:12,meissner:12,profil:12,vortex:12,lattic:12,relat:12,bmw:12,libfitpofb:12,dimension:12,london:12,state:12,isotrop:12,superconductor:12,bulk:12,field:12,distribut:12,mix:12,startup:12,nonloc:12,superconduct:12,screen:12,analyz:12,"\u03b2":12,nmr:12,bnmr:12,libbnmr:12,liblineprofil:12,manual:13,kei:13,shortcut:13,musrft:13,msr2msr:13,dump_head:13,musrfit_startup:13,descript:13,titl:13,fitparamet:13,block:13,command:13,fourier:13,plot:13,statist:13,rrf:13,asymmetri:13,neg:13,muon:13,non:13,without:13,object:13,access:13,technic:13,framework:13},envversion:43})
\ No newline at end of file
diff --git a/doc/html/setup-dks.html b/doc/html/setup-dks.html
index 03859bcc..fcec2311 100644
--- a/doc/html/setup-dks.html
+++ b/doc/html/setup-dks.html
@@ -359,7 +359,7 @@ The only thing you need <tt class="docutils literal"><span class="pre">DKS</span
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/setup-standard.html b/doc/html/setup-standard.html
index 6fa19e78..c9df2538 100644
--- a/doc/html/setup-standard.html
+++ b/doc/html/setup-standard.html
@@ -1486,7 +1486,7 @@ $ musrview test-histo-ROOT-NPP.msr
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/tutorial.html b/doc/html/tutorial.html
index 0adb9796..9c39cb34 100644
--- a/doc/html/tutorial.html
+++ b/doc/html/tutorial.html
@@ -448,7 +448,7 @@ For a complete description please refer to the manuals of <a class="reference in
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/user-libs.html b/doc/html/user-libs.html
index c3975e98..8f159925 100644
--- a/doc/html/user-libs.html
+++ b/doc/html/user-libs.html
@@ -667,7 +667,7 @@ K(m)&amp;=\int_0^{\pi/2}\frac{\mathrm d\varphi}{\sqrt{1-m^2\sin^2{\varphi}}},\en
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>
diff --git a/doc/html/user-manual.html b/doc/html/user-manual.html
index a99d33d1..46938703 100644
--- a/doc/html/user-manual.html
+++ b/doc/html/user-manual.html
@@ -1552,8 +1552,42 @@ The argument may be one of the following:</p>
 </dl>
 <span id="index-47"></span><dl class="docutils" id="msr-fourier-block-phase">
 <dt><strong>phase</strong></dt>
-<dd>The initial phase of the input data is given here in degrees. Optionally the phase parameter from the <a class="reference internal" href="#msr-fitparameter-block"><em>FITPARAMETER block</em></a> can be given,
-<em>e.g.</em> par3, which would take the value of parameter number 3.</dd>
+<dd><p class="first">If a real Fourier shall be plotted, it is necessary to adopt the phases of the different detectors. The number of potentially provided phases can be either <strong>one</strong>, which means that this phase will be applied to <em>all</em> Fourier spectra,
+or the number of phases have to correspond to the number of runs in the plot block.</p>
+<p>Currently there are three options:</p>
+<ol class="last arabic">
+<li><p class="first">The phases for each run/detector are given explicitly, <em>i.e.</em></p>
+<div class="highlight-bash"><div class="highlight"><pre><span></span>phase val0 sep val1 sep ... sep valN
+</pre></div>
+</div>
+<p>where <tt class="docutils literal"><span class="pre">val0</span></tt>, <tt class="docutils literal"><span class="pre">val1</span></tt>, etc. are explicitly given phases (<em>i.e.</em> doubles), and <tt class="docutils literal"><span class="pre">sep</span></tt> is one of the following allowed separators: <tt class="docutils literal"><span class="pre">space</span></tt>, <tt class="docutils literal"><span class="pre">,</span></tt>, <tt class="docutils literal"><span class="pre">;</span></tt>, or <tt class="docutils literal"><span class="pre">tab</span></tt>.
+For example</p>
+<div class="highlight-bash"><div class="highlight"><pre><span></span>phase   -3.2, <span class="m">175</span>.9
+</pre></div>
+</div>
+</li>
+<li><p class="first">The phases for each run/detector are given as phase parameter from the <a class="reference internal" href="#msr-fitparameter-block"><em>FITPARAMETER block</em></a>, <em>e.g.</em> par3, which would
+take the value of parameter number 3. More explicitly</p>
+<div class="highlight-bash"><div class="highlight"><pre><span></span>phase parX0 sep parX1 sep ... sep parXN
+</pre></div>
+</div>
+<p>where the same rules applies as for explicit phase values. An example could look like this</p>
+<div class="highlight-bash"><div class="highlight"><pre><span></span>phase par7, par12, par17, par22, par27, par32, par37, par42, par47, par52, par57, par62, par67, par72, par77, par82
+</pre></div>
+</div>
+</li>
+<li><p class="first">Often the phases in the parameter block follow a clear list structure. This allows to write the Fourier phase parameters in a more compact form</p>
+<div class="highlight-none"><div class="highlight"><pre><span></span>phase par(X0, offset, #param)
+</pre></div>
+</div>
+<p>with <tt class="docutils literal"><span class="pre">X0</span></tt> the first phase parameter index, <tt class="docutils literal"><span class="pre">offset</span></tt> being the offset to the next phase parameter, and <tt class="docutils literal"><span class="pre">#param</span></tt> being the number of phase parameters to be used.
+This means that the previous example can be compacted to</p>
+<div class="highlight-none"><div class="highlight"><pre><span></span>phase par(7, 5, 16)
+</pre></div>
+</div>
+</li>
+</ol>
+</dd>
 </dl>
 <span id="index-48"></span><dl class="docutils" id="msr-fourier-block-range-for-phase-correction">
 <dt><strong>range_for_phase_correction</strong></dt>
@@ -1570,8 +1604,7 @@ units Mc/s
 fourier_power 12
 apodization NONE
 plot real_and_imag
-phase 22.6   # par3
-range_for_phase_correction all
+phase par5, par8
 range 0.0 17.03
 </pre></div>
 </div>
@@ -2162,7 +2195,7 @@ In case this cannot be ensured, the parallelization can be disabled by <em>&#821
     </div>
     <div class="footer">
         &copy; Copyright 2018, Andreas Suter.
-      Last updated on Aug 23, 2018.
+      Last updated on Oct 15, 2018.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
     </div>
   </body>