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Added autotool-support for building musrfit - some additional tests are needed, the old Makefiles are still around

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This commit is contained in:
Bastian M. Wojek 2009-06-19 20:37:06 +00:00
parent 93e6e7d059
commit b5016637fd
28 changed files with 831 additions and 378 deletions
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1
AUTHORS Normal file
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Andreas Suter <andreas.suter@psi.ch>

1
COPYING Symbolic link
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/usr/share/automake-1.9/COPYING

3
ChangeLog Normal file
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musrfit 0.5.0
- Initial release supporting building by autotools

18
INSTALL Normal file
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#---------------------------------------------------------------------
# INSTALL
# Andreas Suter, 2008/01/15
# $Id: README 3854 2009-04-14 19:32:35Z nemu $
#---------------------------------------------------------------------
To get it all build:
./autogen.sh
./configure --prefix=/apps/cern/root
make
make install
In the optimal case, everything is setup ;-)
#---------------------------------------------------------------------
# this is the end ...
#---------------------------------------------------------------------

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Makefile.am Normal file
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## Process this file with automake to create Makefile.in
SUBDIRS = src
EXTRA_DIST = autogen.sh acinclude.m4

0
NEWS Normal file
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src/README → README
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#---------------------------------------------------------------------
# README
# Andreas Suter, 2008/01/15
# $Id$
# $Id: README 3854 2009-04-14 19:32:35Z nemu $
#---------------------------------------------------------------------
To get it all build:
1) go to the subdiretory 'classes' and execute
make -f Makefile.PMusr
make -f Makefile.PMusr install (as root)
2) if the privous step worked execute in the current directory (in which
you found this README)
make clean
./autogen.sh
./configure --prefix=/apps/cern/root
make
make install

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acinclude.m4 Normal file
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dnl -*- mode: autoconf -*-
dnl
dnl $Id: root.m4,v 1.3 2005/03/21 21:42:21 rdm Exp $
dnl $Author: rdm $
dnl $Date: 2005/03/21 21:42:21 $
dnl
dnl Autoconf macro to check for existence or ROOT on the system
dnl Synopsis:
dnl
dnl ROOT_PATH([MINIMUM-VERSION, [ACTION-IF-FOUND, [ACTION-IF-NOT-FOUND]]])
dnl
dnl Some examples:
dnl
dnl ROOT_PATH(3.03/05, , AC_MSG_ERROR(Your ROOT version is too old))
dnl ROOT_PATH(, AC_DEFINE([HAVE_ROOT]))
dnl
dnl The macro defines the following substitution variables
dnl
dnl ROOTCONF full path to root-config
dnl ROOTEXEC full path to root
dnl ROOTCINT full path to rootcint
dnl ROOTLIBDIR Where the ROOT libraries are
dnl ROOTINCDIR Where the ROOT headers are
dnl ROOTETCDIR Where the ROOT configuration is
dnl ROOTCFLAGS Extra compiler flags
dnl ROOTLIBS ROOT basic libraries
dnl ROOTGLIBS ROOT basic + GUI libraries
dnl ROOTAUXLIBS Auxilary libraries and linker flags for ROOT
dnl ROOTAUXCFLAGS Auxilary compiler flags
dnl ROOTRPATH Same as ROOTLIBDIR
dnl
dnl The macro will fail if root-config and rootcint isn't found.
dnl
dnl Christian Holm Christensen <cholm@nbi.dk>
dnl
AC_DEFUN([ROOT_PATH],
[
AC_ARG_WITH([rootsys],
[AC_HELP_STRING([--with-rootsys],
[top of the ROOT installation directory])],
[user_rootsys=$withval],
[user_rootsys="none"])
if test ! x"$user_rootsys" = xnone; then
rootbin="$user_rootsys/bin"
elif test ! x"$ROOTSYS" = x ; then
rootbin="$ROOTSYS/bin"
else
rootbin=$PATH
fi
AC_PATH_PROG(ROOTCONF, root-config , no, $rootbin)
AC_PATH_PROG(ROOTEXEC, root , no, $rootbin)
AC_PATH_PROG(ROOTCINT, rootcint , no, $rootbin)
if test ! x"$ROOTCONF" = "xno" && \
test ! x"$ROOTCINT" = "xno" ; then
# define some variables
ROOTLIBDIR=`$ROOTCONF --libdir`
ROOTINCDIR=`$ROOTCONF --incdir`
ROOTINCDIR=`$ROOTCONF --etcdir`
ROOTCFLAGS=`$ROOTCONF --noauxcflags --cflags`
ROOTLIBS=`$ROOTCONF --noauxlibs --noldflags --libs`
ROOTGLIBS=`$ROOTCONF --noauxlibs --noldflags --glibs`
ROOTAUXCFLAGS=`$ROOTCONF --auxcflags`
ROOTAUXLIBS=`$ROOTCONF --auxlibs`
ROOTRPATH=$ROOTLIBDIR
ROOTVERSION=`$ROOTCONF --version`
ROOTSOVERSION=`dirname $ROOTVERSION`
if test $1 ; then
AC_MSG_CHECKING(wether ROOT version >= [$1])
vers=`$ROOTCONF --version | tr './' ' ' | awk 'BEGIN { FS = " "; } { printf "%d", ($''1 * 1000 + $''2) * 1000 + $''3;}'`
requ=`echo $1 | tr './' ' ' | awk 'BEGIN { FS = " "; } { printf "%d", ($''1 * 1000 + $''2) * 1000 + $''3;}'`
if test $vers -lt $requ ; then
AC_MSG_RESULT(no)
no_root="yes"
else
AC_MSG_RESULT(yes)
fi
fi
else
# otherwise, we say no_root
no_root="yes"
fi
AC_SUBST(ROOTLIBDIR)
AC_SUBST(ROOTINCDIR)
AC_SUBST(ROOTETCDIR)
AC_SUBST(ROOTCFLAGS)
AC_SUBST(ROOTLIBS)
AC_SUBST(ROOTGLIBS)
AC_SUBST(ROOTAUXLIBS)
AC_SUBST(ROOTAUXCFLAGS)
AC_SUBST(ROOTRPATH)
AC_SUBST(ROOTVERSION)
AC_SUBST(ROOTSOVERSION)
if test "x$no_root" = "x" ; then
ifelse([$2], , :, [$2])
else
ifelse([$3], , :, [$3])
fi
])
#
# Macro to check if ROOT has a specific feature:
#
# ROOT_FEATURE(FEATURE,[ACTION_IF_HAVE,[ACTION_IF_NOT]])
#
# For example
#
# ROOT_FEATURE([ldap],[AC_DEFINE([HAVE_ROOT_LDAP])])
#
AC_DEFUN([ROOT_FEATURE],
[
AC_REQUIRE([ROOT_PATH])
feat=$1
res=`$ROOTCONF --has-$feat`
if test "x$res" = "xyes" ; then
ifelse([$2], , :, [$2])
else
ifelse([$3], , :, [$3])
fi
])
#
# EOF
#

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autogen.sh Executable file
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#! /bin/sh
# $Id: autogen.sh,v 1.4 2002/12/02 01:39:49 murrayc Exp $
#
# Copyright (c) 2009 BMW
#
# Based on a autogen.sh script written by Daniel Elstner <daniel.elstner@gmx.net>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License VERSION 2 as
# published by the Free Software Foundation. You are not allowed to
# use any other version of the license; unless you got the explicit
# permission from the author to do so.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
dir=`echo "$0" | sed 's,[^/]*$,,'`
test "x${dir}" = "x" && dir='.'
if test "x`cd "${dir}" 2>/dev/null && pwd`" != "x`pwd`"
then
echo "This script must be executed directly from the source directory."
exit 1
fi
rm -f config.cache acconfig.h
echo "--> libtoolize" && \
libtoolize --force && \
echo "--> aclocal" && \
aclocal && \
echo "--> autoconf" && \
autoconf && \
echo "--> autoheader" && \
autoheader && \
echo "--> automake" && \
automake --add-missing --gnu && exit 0
exit 1

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config.h.in Normal file
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/* config.h.in. Generated from configure.ac by autoheader. */
/* Define to 1 if you have the <dlfcn.h> header file. */
#undef HAVE_DLFCN_H
/* Define to 1 if you have the `floor' function. */
#undef HAVE_FLOOR
/* Define to 1 if you have the `gettimeofday' function. */
#undef HAVE_GETTIMEOFDAY
/* Define to 1 if you have the <inttypes.h> header file. */
#undef HAVE_INTTYPES_H
/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
to 0 otherwise. */
#undef HAVE_MALLOC
/* Define to 1 if you have the <memory.h> header file. */
#undef HAVE_MEMORY_H
/* Define to 1 if you have the `memset' function. */
#undef HAVE_MEMSET
/* Define to 1 if you have the `pow' function. */
#undef HAVE_POW
/* Define to 1 if you have the `sqrt' function. */
#undef HAVE_SQRT
/* Define to 1 if `stat' has the bug that it succeeds when given the
zero-length file name argument. */
#undef HAVE_STAT_EMPTY_STRING_BUG
/* Define to 1 if stdbool.h conforms to C99. */
#undef HAVE_STDBOOL_H
/* Define to 1 if you have the <stddef.h> header file. */
#undef HAVE_STDDEF_H
/* Define to 1 if you have the <stdint.h> header file. */
#undef HAVE_STDINT_H
/* Define to 1 if you have the <stdlib.h> header file. */
#undef HAVE_STDLIB_H
/* Define to 1 if you have the <strings.h> header file. */
#undef HAVE_STRINGS_H
/* Define to 1 if you have the <string.h> header file. */
#undef HAVE_STRING_H
/* Define to 1 if you have the `strstr' function. */
#undef HAVE_STRSTR
/* Define to 1 if you have the <sys/stat.h> header file. */
#undef HAVE_SYS_STAT_H
/* Define to 1 if you have the <sys/time.h> header file. */
#undef HAVE_SYS_TIME_H
/* Define to 1 if you have the <sys/types.h> header file. */
#undef HAVE_SYS_TYPES_H
/* Define to 1 if you have the <unistd.h> header file. */
#undef HAVE_UNISTD_H
/* Define to 1 if the system has the type `_Bool'. */
#undef HAVE__BOOL
/* Define to 1 if `lstat' dereferences a symlink specified with a trailing
slash. */
#undef LSTAT_FOLLOWS_SLASHED_SYMLINK
/* Name of package */
#undef PACKAGE
/* Define to the address where bug reports for this package should be sent. */
#undef PACKAGE_BUGREPORT
/* Define to the full name of this package. */
#undef PACKAGE_NAME
/* Define to the full name and version of this package. */
#undef PACKAGE_STRING
/* Define to the one symbol short name of this package. */
#undef PACKAGE_TARNAME
/* Define to the version of this package. */
#undef PACKAGE_VERSION
/* Define to 1 if you have the ANSI C header files. */
#undef STDC_HEADERS
/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
#undef TIME_WITH_SYS_TIME
/* Version number of package */
#undef VERSION
/* Define to 1 if `lex' declares `yytext' as a `char *' by default, not a
`char[]'. */
#undef YYTEXT_POINTER
/* Define to empty if `const' does not conform to ANSI C. */
#undef const
/* Define to `__inline__' or `__inline' if that's what the C compiler
calls it, or to nothing if 'inline' is not supported under any name. */
#ifndef __cplusplus
#undef inline
#endif
/* Define to rpl_malloc if the replacement function should be used. */
#undef malloc
/* Define to `unsigned' if <sys/types.h> does not define. */
#undef size_t

266
configure.ac Normal file
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AC_PREREQ(2.59)
AC_INIT(musrfit, 0.5.0, andreas.suter@psi.ch)
AC_CONFIG_AUX_DIR(admin)
dnl -----------------------------------------------
dnl Package names and version numbers
dnl -----------------------------------------------
MUSR_PROGRAM_NAME=musrfit
MUSR_LIBRARY_NAME=PMusr
LEM_LIBRARY_NAME=TLemRunHeader
#release versioning
MUSR_MAJOR_VERSION=0
MUSR_MINOR_VERSION=5
MUSR_MICRO_VERSION=0
#release versioning
LEM_MAJOR_VERSION=1
LEM_MINOR_VERSION=5
LEM_MICRO_VERSION=0
#API version
MUSR_API_VERSION=MUSR_MAJOR_VERSION.MUSR_MINOR_VERSION
AC_SUBST(MUSR_API_VERSION)
LEM_API_VERSION=LEM_MAJOR_VERSION.LEM_MINOR_VERSION
AC_SUBST(LEM_API_VERSION)
#shared library versioning
LEM_LIBRARY_VERSION=1:5:0
MUSR_LIBRARY_VERSION=0:5:0
# | | |
# +------+ | +---+
# | | |
# current:revision:age
# | | |
# | | +- increment if interfaces have been added
# | | set to zero if interfaces have been removed
# or changed
# | +- increment if source code has changed
# | set to zero if current is incremented
# +- increment if interfaces have been added, removed or changed
AC_SUBST(MUSR_LIBRARY_VERSION)
AC_SUBST(LEM_LIBRARY_VERSION)
PACKAGE=$MUSR_PROGRAM_NAME
AC_SUBST(MUSR_LIBRARY_NAME)
AC_SUBST(LEM_LIBRARY_NAME)
LEM_VERSION=$LEM_MAJOR_VERSION.$LEM_MINOR_VERSION.$LEM_MICRO_VERSION
LEM_RELEASE=$LEM_MAJOR_VERSION.$LEM_MINOR_VERSION
AC_SUBST(LEM_RELEASE)
AC_SUBST(LEM_VERSION)
MUSR_VERSION=$MUSR_MAJOR_VERSION.$MUSR_MINOR_VERSION.$MUSR_MICRO_VERSION
MUSR_RELEASE=$MUSR_MAJOR_VERSION.$MUSR_MINOR_VERSION
AC_SUBST(MUSR_RELEASE)
AC_SUBST(MUSR_VERSION)
VERSION=$MUSR_VERSION
dnl -----------------------------------------------
dnl Automake initialization and program checks
dnl -----------------------------------------------
AM_INIT_AUTOMAKE(@PACKAGE_NAME@, @PACKAGE_VERSION@)
AC_CONFIG_HEADER([config.h])
AC_LANG(C++)
# Checks for programs.
AC_PROG_AWK
AC_PROG_CXX
AC_PROG_CC
AC_PROG_LEX
AC_PROG_LN_S
AC_PROG_YACC
AC_PROG_INSTALL
AM_PROG_LIBTOOL
ROOT_PATH
dnl -----------------------------------------------
dnl Ask user for path to fftw3 stuff
dnl -----------------------------------------------
FFTW3_FOUND=0
AC_ARG_WITH(fftw3,
[ --with-fftw3=<path> prefix of FFTW3 installation. e.g. /usr/local or /usr],
[FFTW3_PREFIX=$with_fftw3
if !(test -r ${FFTW3_PREFIX}/include/fftw3.h); then
AC_MSG_ERROR(FFTW3 cannot be found at the specified path!)
fi
AC_MSG_RESULT([using ${FFTW3_PREFIX} as prefix of the FFTW3 installation...])],
[PKG_CHECK_MODULES(FFTW3, fftw3 >= 3.1.0, [FFTW3_FOUND=1],
[if test -r /usr/local/include/fftw3.h; then
FFTW3_PREFIX="/usr/local"
AC_MSG_RESULT([using ${FFTW3_PREFIX} as prefix of the FFTW3 installation... (ignore the no just above)])
else if test -r /usr/include/fftw3.h; then
FFTW3_PREFIX="/usr"
AC_MSG_RESULT([using ${FFTW3_PREFIX} as prefix of the FFTW3 installation... (ignore the no just above)])
else
AC_MSG_ERROR(
[FFTW3 not found. Please call configure with the --with-fftw3 option.
This tells configure where to find the FFTW3 C libraries and headers.
e.g. --with-fftw3=/usr/local or --with-fftw3=/usr]
)
fi
fi
]
)
]
)
AC_SUBST(FFTW3_PREFIX)
if test "${FFTW3_FOUND}" != "1"; then
FFTW3_LIBS="-L${FFTW3_PREFIX}/lib -lfftw3 -lm"
FFTW3_CFLAGS="-I${FFTW3_PREFIX}/include"
fi
AC_SUBST(FFTW3_LIBS)
AC_SUBST(FFTW3_CFLAGS)
dnl -----------------------------------------------
dnl Ask user for path to gsl stuff
dnl -----------------------------------------------
GSL_FOUND=0
AC_ARG_WITH(gsl,
[ --with-gsl=<path> prefix of GSL installation. e.g. /usr/local or /usr],
[GSL_PREFIX=$with_gsl
if !(test -r ${GSL_PREFIX}/include/gsl/gsl_sf_hyperg.h); then
AC_MSG_ERROR(GSL cannot be found at the specified path!)
fi
AC_MSG_RESULT([using ${GSL_PREFIX} as prefix of the GSL installation...])],
[PKG_CHECK_MODULES(GSL, gsl >= 1.9 gslcblas >= 1.9, [GSL_FOUND=1],
[if test -r /usr/local/include/gsl/gsl_sf_hyperg.h; then
GSL_PREFIX="/usr/local"
AC_MSG_RESULT([using ${GSL_PREFIX} as prefix of the GSL installation... (ignore the no just above)])
else if test -r /usr/include/gsl/gsl_sf_hyperg.h; then
GSL_PREFIX="/usr"
AC_MSG_RESULT([using ${GSL_PREFIX} as prefix of the GSL installation... (ignore the no just above)])
else
AC_MSG_ERROR(
[GSL not found. Please call configure with the --with-gsl option.
This tells configure where to find the GSL C libraries and headers.
e.g. --with-gsl=/usr/local or --with-gsl=/usr]
)
fi
fi
]
)
]
)
AC_SUBST(GSL_PREFIX)
if test "${GSL_FOUND}" != "1"; then
GSL_LIBS="-L${GSL_PREFIX}/lib -lgsl -lgslcblas -lm"
GSL_CFLAGS="-I${GSL_PREFIX}/include/gsl"
fi
AC_SUBST(GSL_LIBS)
AC_SUBST(GSL_CFLAGS)
dnl -----------------------------------------------
dnl Ask user for path to boost stuff
dnl -----------------------------------------------
BOOST_FOUND=0
AC_ARG_WITH(boostinc,
[ --with-boostinc=<path> path to the header files of the Boost installation. e.g. /usr/local/include or /usr/include],
[BOOST_INCLUDE=$with_boostinc
if !(test -r ${BOOST_INCLUDE}/boost/spirit.hpp); then
AC_MSG_ERROR(Boost cannot be found at the specified path!)
fi
AC_MSG_RESULT([using ${BOOST_INCLUDE} as include path for the Boost headers...])],
[PKG_CHECK_MODULES(BOOST, boost >= 1.30, [BOOST_FOUND=1],
[if test -r /usr/local/include/boost/spirit.hpp; then
BOOST_INCLUDE="/usr/local/include"
AC_MSG_RESULT([using ${BOOST_INCLUDE} as include path for the Boost headers... (ignore the no just above)])
else if test -r /usr/include/boost/spirit.hpp; then
BOOST_INCLUDE="/usr/include"
AC_MSG_RESULT([using ${BOOST_INCLUDE} as include path for the Boost headers... (ignore the no just above)])
else
AC_MSG_ERROR(
[Boost not found. Please call configure with the --with-boostinc option.
This tells configure where to find the Boost C++ headers.
e.g. --with-boostinc=/usr/local/include or --with-boostinc=/usr/include or --with-boostinc=/usr/include/boost-1_33_0]
)
fi
fi
]
)
]
)
AC_SUBST(BOOST_INCLUDE)
if test "${BOOST_FOUND}" != "1"; then
BOOST_LIBS=""
BOOST_CFLAGS="-I${BOOST_INCLUDE}"
fi
AC_SUBST(BOOST_LIBS)
AC_SUBST(BOOST_CFLAGS)
dnl -----------------------------------------------
dnl Check for ROOT
dnl -----------------------------------------------
ROOT_PATH([5.22/00], [], AC_MSG_ERROR([Either ROOT is not installed correctly or the version is too old... please check!]))
ROOT_LIBS="-L@ROOTLIBDIR@ @ROOTGLIBS@ -lMinuit2 -lMathMore -lXMLParser "
ROOT_CFLAGS="-I@ROOTINCDIR@ @ROOTCFLAGS@"
AC_SUBST(ROOT_LIBS)
AC_SUBST(ROOT_CFLAGS)
dnl -----------------------------------------------
dnl Set some paths and flags for PMusr and TLemRunHeader
dnl -----------------------------------------------
SRCDIR="$(pwd)"
LEM_SRCDIR="${SRCDIR}/src/external/TLemRunHeader"
LEM_LIBS="-L${LEM_SRCDIR} -l${LEM_LIBRARY_NAME}"
LEM_CFLAGS="-I${LEM_SRCDIR}"
AC_SUBST(LEM_LIBS)
AC_SUBST(LEM_CFLAGS)
PMUSR_LIBS="-L${SRCDIR}/src/classes -l${MUSR_LIBRARY_NAME}"
PMUSR_CFLAGS="-I${SRCDIR}/src/include"
AC_SUBST(PMUSR_LIBS)
AC_SUBST(PMUSR_CFLAGS)
dnl -----------------------------------------------
dnl Some standard checks for header files and libraries
dnl -----------------------------------------------
# Checks for header files.
AC_HEADER_STDC
AC_CHECK_HEADERS([stddef.h stdlib.h string.h sys/time.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_C_CONST
AC_C_INLINE
AC_TYPE_SIZE_T
AC_HEADER_TIME
# Checks for library functions.
AC_FUNC_MALLOC
AC_FUNC_STAT
AC_CHECK_FUNCS([floor gettimeofday memset pow sqrt strstr])
dnl -----------------------------------------------
dnl Specify the files that are going to be created by configure
dnl -----------------------------------------------
AC_CONFIG_FILES([Makefile \
src/Makefile \
src/classes/Makefile \
src/classes/PMusr.pc \
src/external/Makefile \
src/external/TLemRunHeader/Makefile \
src/external/TLemRunHeader/TLemRunHeader.pc \
src/external/scripts/Makefile])
AC_OUTPUT

340
copying
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@ -1,340 +0,0 @@
GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
have the freedom to distribute copies of free software (and charge for
this service if you wish), that you receive source code or can get it
if you want it, that you can change the software or use pieces of it
in new free programs; and that you know you can do these things.
To protect your rights, we need to make restrictions that forbid
anyone to deny you these rights or to ask you to surrender the rights.
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gratis or for a fee, you must give the recipients all the rights that
you have. You must make sure that they, too, receive or can get the
source code. And you must show them these terms so they know their
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We protect your rights with two steps: (1) copyright the software, and
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Finally, any free program is threatened constantly by software
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The precise terms and conditions for copying, distribution and
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TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
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possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
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<one line to give the program's name and a brief idea of what it does.>
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(at your option) any later version.
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Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) year name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
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mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
<signature of Ty Coon>, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.

20
src/Makefile.am Normal file
View File

@ -0,0 +1,20 @@
## Process this file with automake to create Makefile.in
SUBDIRS = classes external
bin_PROGRAMS = musrfit musrview musrt0 musrparam msr2msr
musrfit_SOURCES = musrfit.cpp
musrview_SOURCES = musrview.cpp
musrt0_SOURCES = musrt0.cpp
musrparam_SOURCES = musrparam.cpp
msr2msr_SOURCES = msr2msr.cpp
xmldir = $(bindir)
xml_DATA = musrfit_startup.xml
LIBADD = $(LEM_LIBS) $(PMUSR_LIBS)
AM_CFLAGS = -g -O3 -Wall -Wno-trigraphs
INCLUDES = $(PMUSR_CFLAGS) $(FFTW3_CFLAGS) $(GSL_CFLAGS) $(BOOST_CFLAGS) $(ROOT_CFLAGS)
LIBS = $(LEM_LIBS) $(PMUSR_LIBS) $(FFTW3_LIBS) $(GSL_LIBS) $(ROOT_LIBS)

0
src/Makefile → src/Makefile.musrfit
View File

4
src/classes/Makefile.PMusr
View File

@ -44,7 +44,7 @@ endif
# -- Linux
ifeq ($(OS),LINUX)
CXX = g++
CXX = g++-4.2.4
CXXFLAGS = -O3 -Wall -Wno-trigraphs -fPIC
PMUSRPATH = ../include
MNPATH = $(ROOTSYS)/include
@ -54,7 +54,7 @@ FFTW3PATH = /usr/include
LEMPATH = ../external/TLemRunHeader
PSIBINPATH = ../external/MuSR_software/Class_MuSR_PSI
INCLUDES = -I$(PMUSRPATH) -I$(MNPATH) -I$(GSLPATH) -I$(BOOSTPATH) -I$(LEMPATH) -I$(PSIBINPATH) -I$(FFTW3PATH)
LD = g++
LD = g++-4.2.4
LDFLAGS = -O
SOFLAGS = -shared
LEMLIB = libTLemRunHeader.so

4
src/classes/Makefile.PUserFcn
View File

@ -34,10 +34,10 @@ endif
# -- Linux
ifeq ($(OS),LINUX)
CXX = g++
CXX = g++-4.3.3
CXXFLAGS = -Wall -Wno-trigraphs -fPIC
INCLUDES = -I../include
LD = g++
LD = g++-4.3.3
LDFLAGS = -g
SOFLAGS = -O -shared
endif

90
src/classes/Makefile.am Normal file
View File

@ -0,0 +1,90 @@
## Process this file with automake to create Makefile.in
h_sources = \
../include/PFitterFcn.h \
../include/PFitter.h \
../include/PFourier.h \
../include/PFunctionGrammar.h \
../include/PFunction.h \
../include/PFunctionHandler.h \
../include/PMsrHandler.h \
../include/PMusrCanvas.h \
../include/PMusr.h \
../include/PMusrT0.h \
../include/PRunAsymmetry.h \
../include/PRunBase.h \
../include/PRunDataHandler.h \
../include/PRunListCollection.h \
../include/PRunNonMusr.h \
../include/PRunRRF.h \
../include/PRunSingleHisto.h \
../include/PStartupHandler.h \
../include/PTheory.h \
../include/PUserFcnBase.h
h_linkdef = \
../include/PMusrCanvasLinkDef.h \
../include/PMusrT0LinkDef.h \
../include/PStartupHandlerLinkDef.h \
../include/PUserFcnBaseLinkDef.h
dict_h_sources = \
PMusrCanvasDict.h \
PMusrT0Dict.h \
PStartupHandlerDict.h \
PUserFcnBaseDict.h
cpp_sources = \
PFitter.cpp \
PFitterFcn.cpp \
PFourier.cpp \
PFunction.cpp \
PFunctionHandler.cpp \
PMsrHandler.cpp \
PMusrCanvas.cpp \
PMusrT0.cpp \
PRunAsymmetry.cpp \
PRunBase.cpp \
PRunDataHandler.cpp \
PRunListCollection.cpp \
PRunNonMusr.cpp \
PRunRRF.cpp \
PRunSingleHisto.cpp \
PStartupHandler.cpp \
PTheory.cpp \
PUserFcnBase.cpp
dict_cpp_sources = \
PMusrCanvasDict.cpp \
PMusrT0Dict.cpp \
PStartupHandlerDict.cpp \
PUserFcnBaseDict.cpp
ext_source_dir = $(top_srcdir)/src/external/MuSR_software/Class_MuSR_PSI
ext_h_sources = $(ext_source_dir)/MuSR_td_PSI_bin.h $(ext_source_dir)/tydefs.h
ext_cpp_sources = $(ext_source_dir)/MuSR_td_PSI_bin.cpp
include_HEADERS = $(h_sources) $(ext_h_sources)
noinst_HEADERS = $(h_linkdef) $(dict_h_sources)
INCLUDES = -I$(top_srcdir)/src/include -I$(ext_source_dir) $(LEM_CFLAGS) $(FFTW3_CFLAGS) $(GSL_CFLAGS) $(BOOST_CFLAGS) $(ROOT_CFLAGS)
AM_CXXFLAGS = -g -O3 -Wall -Wno-trigraphs
BUILT_SOURCES = $(dict_cpp_sources) $(dict_h_sources)
AM_CPPFLAGS = -I@ROOTINCDIR@
AM_LDFLAGS = -L@ROOTLIBDIR@
CLEANFILES = *Dict.cpp *Dict.h *~ core
%Dict.cpp %Dict.h: ../include/%.h ../include/%LinkDef.h
@ROOTCINT@ -v -f $*Dict.cpp -c -p $(INCLUDES) $(AM_CPPFLAGS) $^
lib_LTLIBRARIES = libPMusr.la
LIBADD = $(LEM_LIBS)
libPMusr_la_SOURCES = $(h_sources) $(cpp_sources) $(dict_h_sources) $(dict_cpp_sources) $(ext_h_sources) $(ext_cpp_sources)
libPMusr_la_LIBADD = $(FFTW3_LIBS) $(GSL_LIBS) $(ROOT_LIBS)
libPMusr_la_LDFLAGS = -version-info $(MUSR_LIBRARY_VERSION) -release $(MUSR_RELEASE)
pkgconfigdir = $(libdir)/pkgconfig
pkgconfig_DATA = PMusr.pc

12
src/classes/PFitter.cpp
View File

@ -31,6 +31,7 @@
#include <iostream>
#include <fstream>
#include <limits>
using namespace std;
#include <math.h>
@ -408,8 +409,11 @@ bool PFitter::ExecuteHesse()
// create the hesse object
ROOT::Minuit2::MnHesse hesse;
// specify maximal number of function calls
unsigned int maxfcn = numeric_limits<unsigned int>::max();
// call hesse
ROOT::Minuit2::MnUserParameterState mnState = hesse((*fFitterFcn), fMnUserParams);
ROOT::Minuit2::MnUserParameterState mnState = hesse((*fFitterFcn), fMnUserParams, maxfcn);
if (!mnState.IsValid()) {
cout << endl << "**WARNING** PFitter::ExecuteHesse(): Hesse encountered some problems!";
@ -453,7 +457,7 @@ bool PFitter::ExecuteMigrad()
// minimize
// maxfcn is MINUIT2 Default maxfcn
unsigned int maxfcn = (200 + 100*fParams.size() + 5*fParams.size()*fParams.size());
unsigned int maxfcn = numeric_limits<unsigned int>::max();
// tolerance = MINUIT2 Default tolerance
double tolerance = 0.1;
ROOT::Minuit2::FunctionMinimum min = migrad(maxfcn, tolerance);
@ -521,7 +525,7 @@ bool PFitter::ExecuteMinimize()
// minimize
// maxfcn is MINUIT2 Default maxfcn
unsigned int maxfcn = (200 + 100*fParams.size() + 5*fParams.size()*fParams.size());
unsigned int maxfcn = numeric_limits<unsigned int>::max();
//cout << endl << "maxfcn=" << maxfcn << endl;
// tolerance = MINUIT2 Default tolerance
double tolerance = 0.1;
@ -896,7 +900,7 @@ bool PFitter::ExecuteSimplex()
// minimize
// maxfcn is 10*MINUIT2 Default maxfcn
unsigned int maxfcn = 10*(200 + 100*fParams.size() + 5*fParams.size()*fParams.size());
unsigned int maxfcn = numeric_limits<unsigned int>::max();
// tolerance = MINUIT2 Default tolerance
double tolerance = 0.1;
ROOT::Minuit2::FunctionMinimum min = simplex(maxfcn, tolerance);

10
src/classes/PMusr.pc.in Normal file
View File

@ -0,0 +1,10 @@
prefix=@prefix@
exec_prefix=@exec_prefix@
libdir=@libdir@
includedir=@includedir@
Name: PMusr
Description: C++ shared library providing musr classes
Version: @VERSION@
Libs: -L${libdir} -l@GENERIC_LIBRARY_NAME@
Cflags: -I${includedir}/@GENERIC_LIBRARY_NAME@ -I${libdir}/include

1
src/external/Makefile.am vendored Normal file
View File

@ -0,0 +1 @@
SUBDIRS = TLemRunHeader scripts

25
src/external/TFitPofB-lib/classes/TBofZCalc.cpp vendored
View File

@ -152,11 +152,16 @@ TLondon1D_1L::TLondon1D_1L(const vector<double> &param, unsigned int steps)
fMinB = -1.0;
// thicknesses have to be greater or equal to zero
for(unsigned int i(1); i<3; i++)
assert(param[i]>=0.);
for(unsigned int i(1); i<3; i++){
if(param[i] < 0.){
fParam[i] = 0.;
}
}
// lambdas have to be greater than zero
assert(param[3]!=0.);
if(param[3] < 0.1){
fParam[3] = 0.1;
}
// Calculate the coefficients of the exponentials
double N0(param[0]/(1.0+exp(param[2]/param[3])));
@ -194,7 +199,10 @@ double TLondon1D_1L::GetBmin() const
void TLondon1D_1L::SetBmin()
{
double b_a(fCoeff[1]/fCoeff[0]);
assert (b_a>0.);
// assert(b_a>0.);
if(b_a<10E-7){
b_a = 10E-7;
}
double minZ;
// check if the minimum is in the first layer
@ -205,7 +213,14 @@ void TLondon1D_1L::SetBmin()
return;
}
assert(fMinZ > 0. && fMinB > 0.);
// assert(fMinZ > 0. && fMinB > 0.);
if(fMinZ <= 0.){
fMinZ = 0.;
}
if(fMinB <= 0.){
fMinB = 0.;
}
return;
}

37
src/external/TFitPofB-lib/classes/TLondon1D.cpp vendored
View File

@ -204,6 +204,8 @@ double TLondon1DHS::operator()(double t, const vector<double> &par) const {
if(t<0.0)
return cos(par[0]*0.017453293);
bool dead_layer_changed(false);
// check if the function is called the first time and if yes, read in parameters
if(fFirstCall){
@ -217,7 +219,8 @@ double TLondon1DHS::operator()(double t, const vector<double> &par) const {
fParForBofZ.push_back(fPar[i]);
// cout << "fParForBofZ[" << i-2 << "] = " << fParForBofZ[i-2] << endl;
}
fFirstCall=false;
fFirstCall = false;
dead_layer_changed = true;
// cout << this << endl;
}
@ -232,11 +235,11 @@ double TLondon1DHS::operator()(double t, const vector<double> &par) const {
par_changed = true;
if (i == 0) {
only_phase_changed = true;
} else if (i == 3) {
fDeadLayerChanged = true;
only_phase_changed = false;
} else {
only_phase_changed = false;
if (i == 3) {
dead_layer_changed = true;
}
}
}
}
@ -261,12 +264,11 @@ double TLondon1DHS::operator()(double t, const vector<double> &par) const {
fParForPofB[3] = par[2]; // Bkg-Field
//fParForPofB[4] = 0.005; // Bkg-width (in principle zero)
if(fDeadLayerChanged){
if(dead_layer_changed){
vector<double> interfaces;
interfaces.push_back(par[3]);// dead layer
fParForPofB[5] = fImpProfile->LayerFraction(par[1], 1, interfaces); // Fraction of muons in the deadlayer
interfaces.clear();
fDeadLayerChanged = false;
}
TLondon1D_HS BofZ(fParForBofZ);
@ -615,7 +617,9 @@ TProximity1D1LHS::TProximity1D1LHS() : fCalcNeeded(true), fFirstCall(true) {
fParForPofB.push_back(startupHandler->GetDeltat());
fParForPofB.push_back(startupHandler->GetDeltaB());
fParForPofB.push_back(0.0);
// fParForPofB.push_back(0.0);
fParForPofB.push_back(0.0); // Bkg-Field
fParForPofB.push_back(0.005); // Bkg-width
fParForPofB.push_back(0.0); // Bkg-weight
TTrimSPData *x = new TTrimSPData(rge_path, energy_vec);
fImpProfile = x;
@ -652,6 +656,7 @@ double TProximity1D1LHS::operator()(double t, const vector<double> &par) const {
// check if the function is called the first time and if yes, read in parameters
bool width_changed(false);
bool dead_layer_changed(false);
if(fFirstCall){
fPar = par;
@ -666,6 +671,7 @@ double TProximity1D1LHS::operator()(double t, const vector<double> &par) const {
}
fFirstCall=false;
width_changed = true;
dead_layer_changed = true;
// cout << this << endl;
}
@ -685,6 +691,9 @@ double TProximity1D1LHS::operator()(double t, const vector<double> &par) const {
if (i == 7){
width_changed = true;
}
if (i == 4){
dead_layer_changed = true;
}
}
}
}
@ -705,11 +714,19 @@ double TProximity1D1LHS::operator()(double t, const vector<double> &par) const {
for (unsigned int i(2); i<fPar.size(); i++)
fParForBofZ[i-2] = par[i];
fParForPofB[2] = par[1]; // energy
if(width_changed) { // Convolution of the implantation profile with Gaussian
fImpProfile->ConvolveGss(par[7], par[1]);
width_changed = false;
}
fParForPofB[2] = par[1]; // energy
fParForPofB[3] = par[2]; // Bkg-Field
//fParForPofB[4] = 0.005; // Bkg-width (in principle zero)
if(dead_layer_changed){
vector<double> interfaces;
interfaces.push_back(par[4]);// dead layer
fParForPofB[5] = fImpProfile->LayerFraction(par[1], 1, interfaces); // Fraction of muons in the deadlayer
interfaces.clear();
}
TProximity1D_1LHS BofZ(fParForBofZ);

3
src/external/TFitPofB-lib/classes/TPofBCalc.cpp vendored
View File

@ -186,7 +186,8 @@ TPofBCalc::TPofBCalc( const TBofZCalcInverse &BofZ, const TTrimSPData &dataTrimS
for (unsigned int i(firstZerosEnd); i<lastZerosStart; i++)
fPB[i] /= pBsum;
AddBackground(para[3], para[4], para[5]);
if(para.size() == 6)
AddBackground(para[3], para[4], para[5]);
}

1
src/external/TFitPofB-lib/include/TLondon1D.h vendored
View File

@ -30,7 +30,6 @@ private:
TPofTCalc *fPofT;
mutable bool fCalcNeeded;
mutable bool fFirstCall;
mutable bool fDeadLayerChanged;
mutable vector<double> fParForPofT;
mutable vector<double> fParForBofZ;
mutable vector<double> fParForPofB;

43
src/external/TLemRunHeader/Makefile.am vendored Normal file
View File

@ -0,0 +1,43 @@
## Process this file with automake to create Makefile.in
h_sources = \
TLemStats.h \
TLemRunHeader.h
h_linkdef = \
TLemStatsLinkDef.h \
TLemRunHeaderLinkDef.h
dict_h_sources = \
TLemStatsDict.h \
TLemRunHeaderDict.h
cpp_sources = \
TLemStats.cxx \
TLemRunHeader.cxx
dict_cpp_sources = \
TLemStatsDict.cxx \
TLemRunHeaderDict.cxx
include_HEADERS = $(h_sources)
noinst_HEADERS = $(h_linkdef) $(dict_h_sources)
INCLUDES = -I. $(ROOT_CFLAGS)
BUILT_SOURCES = $(dict_cpp_sources) $(dist_h_sources)
AM_CPPFLAGS = -I@ROOTINCDIR@
AM_LDFLAGS = -L@ROOTLIBDIR@
CLEANFILES = *Dict.cxx *Dict.h *~ core
%Dict.cxx %Dict.h: %.h %LinkDef.h
@ROOTCINT@ -v -f $*Dict.cxx -c -p $(INCLUDES) $(AM_CPPFLAGS) $^
lib_LTLIBRARIES = libTLemRunHeader.la
libTLemRunHeader_la_SOURCES = $(h_sources) $(cpp_sources) $(dict_h_sources) $(dict_cpp_sources)
libTLemRunHeader_la_LIBADD = $(ROOT_LIBS)
libTLemRunHeader_la_LDFLAGS = -version-info $(LEM_LIBRARY_VERSION) -release $(LEM_RELEASE)
pkgconfigdir = $(libdir)/pkgconfig
pkgconfig_DATA = TLemRunHeader.pc

10
src/external/TLemRunHeader/TLemRunHeader.pc.in vendored Normal file
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@ -0,0 +1,10 @@
prefix=@prefix@
exec_prefix=@exec_prefix@
libdir=@libdir@
includedir=@includedir@
Name: TLemRunHeader
Description: C++ shared library providing the LEM Run Header class
Version: @VERSION@
Libs: -L${libdir} -l@GENERIC_LIBRARY_NAME@
Cflags: -I${includedir}

1
src/external/scripts/Makefile.am vendored Normal file
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@ -0,0 +1 @@
bin_SCRIPTS = msr2data

4
src/musrgui/musrgui.pro
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@ -9,8 +9,8 @@ exists( /usr/bin/cygwin1.dll ) {
}
INSTALLS += target
QMAKE_CC = gcc
QMAKE_CXX = g++
QMAKE_CC = gcc-4.2.4
QMAKE_CXX = g++-4.2.4
# install path for the XML configuration file
unix:xml.path = $(ROOTSYS)/bin/