diff --git a/src/msr2data.cpp b/src/msr2data.cpp
index 95ab1514..adc74de3 100644
--- a/src/msr2data.cpp
+++ b/src/msr2data.cpp
@@ -935,9 +935,12 @@ int main(int argc, char *argv[])
           }
           std::ostringstream oss;
           oss << path << "musrfit" << " " << strInfile.str() << " " << musrfitOptions;
-          std::cout << std::endl << ">> msr2data: **INFO** Calling " << oss.str() << std::endl;
-          if (system(oss.str().c_str()) == -1) {
-            std::cerr << "**ERROR** cmd: " << oss.str().c_str() << " failed." << std::endl;
+          std::string cmdStr = oss.str();
+          cmdStr.erase(std::remove(cmdStr.begin(), cmdStr.end(), '\r'), cmdStr.end());
+          cmdStr.erase(std::remove(cmdStr.begin(), cmdStr.end(), '\n'), cmdStr.end());
+          std::cout << std::endl << ">> msr2data: **INFO** Calling " << cmdStr << std::endl;
+          if (system(cmdStr.c_str()) == -1) {
+            std::cerr << "**ERROR** cmd: " << cmdStr << " failed." << std::endl;
           }
         }
       }