LMU/musrfit
LMU/musrfit
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mlog2db now also processes single runs and subsequent runs from the higher to the lower run number...

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This commit is contained in:
Bastian M. Wojek 2008-10-01 10:23:05 +00:00
parent f23694fa89
commit a85e593237
1 changed files with 53 additions and 19 deletions
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62
src/external/scripts/mlog2db vendored
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@ -1,7 +1,7 @@
#!/bin/bash #!/bin/bash
if [ ! -x /usr/bin/awk ]; then if [ ! -x /usr/bin/awk ]; then
echo Please make sure you have installed awk! echo ">> mlog2db: Please make sure you have installed awk!"
exit 1 exit 1
fi fi
@ -113,9 +113,18 @@ else
if [ "${RIGHTBRACKET:(-1)}" == "]" ]; then if [ "${RIGHTBRACKET:(-1)}" == "]" ]; then
RIGHTBRACKET=$i RIGHTBRACKET=$i
break break
else
RIGHTBRACKET=0
fi fi
done done
if [ "$RIGHTBRACKET" -eq 0 ]; then
echo
echo ">> mlog2db: Syntax error - you used the list specification without closing bracket (])! Quitting now."
echo
exit 1
fi
EXTENSION=$( eval echo \$$((RIGHTBRACKET + 1)) ) EXTENSION=$( eval echo \$$((RIGHTBRACKET + 1)) )
OPT_PAR_ONE=$( eval echo \$$((RIGHTBRACKET + 2)) ) OPT_PAR_ONE=$( eval echo \$$((RIGHTBRACKET + 2)) )
OPT_PAR_TWO=$( eval echo \$$((RIGHTBRACKET + 3)) ) OPT_PAR_TWO=$( eval echo \$$((RIGHTBRACKET + 3)) )
@ -127,13 +136,23 @@ else
NUM_OF_IND_VAR=1 # 1 for the run number NUM_OF_IND_VAR=1 # 1 for the run number
else else
ISDIGIT=$( echo $1 | awk '{ if (( $1 + 0 ) == $1 ) {print 1} else {print 0}}' ) # check if the first parameter is a number or not ISDIGIT1=$( echo $1 | awk '{ if (( $1 + 0 ) == $1 ) {print 1} else {print 0}}' ) # check if the first parameter is a number or not
if [ "$ISDIGIT" == 1 ]; then # start and end-runs are given ISDIGIT2=$( echo $2 | awk '{ if (( $1 + 0 ) == $1 ) {print 1} else {print 0}}' ) # check if the second parameter is a number or not
if [ "$ISDIGIT1" -eq 1 ] && [ "$ISDIGIT2" -eq 1 ]; then # start and end-runs are given
if [ "$1" -le "$2" ]; then # runs are given with increasing run numbers
for (( j=0; j<=$2-$1; j++ )) for (( j=0; j<=$2-$1; j++ ))
do do
RUNARRAY[$j]=$(( $1 + $j )) RUNARRAY[$j]=$(( $1 + $j ))
done done
LASTRUN=$(( $2 - $1 )) # RUNARRAY-index of the last run LASTRUN=$(( $2 - $1 )) # RUNARRAY-index of the last run
else # runs are given with decreasing run numbers
for (( j=0; j<=$1-$2; j++ ))
do
RUNARRAY[$j]=$(( $1 - $j ))
done
LASTRUN=$(( $1 - $2 )) # RUNARRAY-index of the last run
fi
EXTENSION=$3 EXTENSION=$3
OPT_PAR_ONE=$4 OPT_PAR_ONE=$4
@ -145,10 +164,25 @@ else
RUNLIST_USED=0 RUNLIST_USED=0
NUM_OF_IND_VAR=1 # 1 for the run number NUM_OF_IND_VAR=1 # 1 for the run number
elif [ "$ISDIGIT1" -eq 1 ] && [ "$ISDIGIT2" -eq 0 ]; then # only one run number is given
RUNARRAY[0]=$1
LASTRUN=0 # RUNARRAY-index of the last run
EXTENSION=$2
OPT_PAR_ONE=$3
OPT_PAR_TWO=$4
OPT_PAR_THREE=$5
OPT_PAR_FOUR=$6
OPT_PAR_FIVE=$7
OPT_PAR_SIX=$8
RUNLIST_USED=0
NUM_OF_IND_VAR=1 # 1 for the run number
else # assume a runlist-file with "independent variables" is given else # assume a runlist-file with "independent variables" is given
if [ ! -r $1 ]; then if [ ! -r $1 ]; then
echo echo
echo "The specified runlist file $1 is not present... Bye bye!" echo ">> mlog2db: The specified runlist file $1 is not present... Bye bye!"
echo echo
exit 1 exit 1
fi fi
@ -201,8 +235,8 @@ else
PATHTOMUSRFIT=$(echo `which musrfit`) PATHTOMUSRFIT=$(echo `which musrfit`)
if [ "$PATHTOMUSRFIT" == "" ]; then if [ "$PATHTOMUSRFIT" == "" ]; then
echo echo
echo "No musrfit executable was found on the PATH or in the current directory!" echo ">> mlog2db: No musrfit executable was found on the PATH or in the current directory!"
echo "Please install musrfit first!" echo ">> mlog2db: Please install musrfit first!"
echo echo
exit 1 exit 1
else else
@ -224,7 +258,7 @@ else
if [ "$TEMP" != "" ]; then # if fitting should be done if [ "$TEMP" != "" ]; then # if fitting should be done
if [ "$TEMPLATE" == "" ]; then if [ "$TEMPLATE" == "" ]; then
echo echo
echo "The specified musrfit template files "$TEMP$3".mlog and $TEMP$3.msr do not exist!" echo ">> mlog2db: The specified musrfit template files "$TEMP$3".mlog and $TEMP$3.msr do not exist!"
echo echo
exit 1 exit 1
fi fi
@ -264,7 +298,7 @@ else
if [ ! -r $COUNT$EXTENSION.mlog ]; then if [ ! -r $COUNT$EXTENSION.mlog ]; then
echo echo
echo "The specified musrfit output file $COUNT$EXTENSION.mlog does not exist!" echo ">> mlog2db: The specified musrfit output file $COUNT$EXTENSION.mlog does not exist!"
echo echo
exit 1 exit 1
fi fi
@ -318,7 +352,7 @@ else
if(optPARtwo != "noheader" && optPARtwo != "nosummary" && optPARtwo !~ /^fit/ && optPARtwo != "-k"){ if(optPARtwo != "noheader" && optPARtwo != "nosummary" && optPARtwo !~ /^fit/ && optPARtwo != "-k"){
outfile = optPARtwo outfile = optPARtwo
} }
else if(NR==1) print "You did not specify an output file! The default one (out.db) will be used." else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
} }
else outfile = substr(optPARone,3) else outfile = substr(optPARone,3)
} }
@ -327,7 +361,7 @@ else
if(optPARthree != "noheader" && optPARthree != "nosummary" && optPARthree !~ /^fit/ && optPARthree != "-k"){ if(optPARthree != "noheader" && optPARthree != "nosummary" && optPARthree !~ /^fit/ && optPARthree != "-k"){
outfile = optPARthree outfile = optPARthree
} }
else if(NR==1) print "You did not specify an output file! The default one (out.db) will be used." else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
} }
else outfile = substr(optPARtwo,3) else outfile = substr(optPARtwo,3)
} }
@ -336,7 +370,7 @@ else
if(optPARfour != "noheader" && optPARfour != "nosummary" && optPARfour !~ /^fit/ && optPARfour != "-k"){ if(optPARfour != "noheader" && optPARfour != "nosummary" && optPARfour !~ /^fit/ && optPARfour != "-k"){
outfile = optPARfour outfile = optPARfour
} }
else if(NR==1) print "You did not specify an output file! The default one (out.db) will be used." else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
} }
else outfile = substr(optPARthree,3) else outfile = substr(optPARthree,3)
} }
@ -345,7 +379,7 @@ else
if(optPARfive != "noheader" && optPARfive != "nosummary" && optPARfive !~ /^fit/ && optPARfive != "-k"){ if(optPARfive != "noheader" && optPARfive != "nosummary" && optPARfive !~ /^fit/ && optPARfive != "-k"){
outfile = optPARfive outfile = optPARfive
} }
else if(NR==1) print "You did not specify an output file! The default one (out.db) will be used." else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
} }
else outfile = substr(optPARfour,3) else outfile = substr(optPARfour,3)
} }
@ -354,13 +388,13 @@ else
if(optPARsix != "noheader" && optPARsix != "nosummary" && optPARsix !~ /^fit/ && optPARsix != "-k"){ if(optPARsix != "noheader" && optPARsix != "nosummary" && optPARsix !~ /^fit/ && optPARsix != "-k"){
outfile = optPARsix outfile = optPARsix
} }
else if(NR==1) print "You did not specify an output file! The default one (out.db) will be used." else if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
} }
else outfile = substr(optPARfive,3) else outfile = substr(optPARfive,3)
} }
else if(optPARsix ~ /^-o/){ else if(optPARsix ~ /^-o/){
if(optPARsix == "-o"){ if(optPARsix == "-o"){
if(NR==1) print "You did not specify an output file! The default one (out.db) will be used." if(NR==1) print ">> mlog2db: You did not specify an output file! The default one (out.db) will be used."
} }
else outfile = substr(optPARsix,3) else outfile = substr(optPARsix,3)
} }