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Merge remote-tracking branch 'origin/depthProf' into root6

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This commit is contained in:
suter_a
2023-02-17 07:39:17 +01:00
parent 7f3cc5a18f 6c8c8d6706
commit 9e88ddb989
172 changed files with 18799 additions and 20 deletions
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26
src/classes/PMusr.cpp
View File

@ -150,6 +150,32 @@ PNonMusrRawRunData::~PNonMusrRawRunData()
fErrData.clear();
}
//--------------------------------------------------------------------------
// SetSize (public)
//--------------------------------------------------------------------------
/**
* <p>Allows to set the number of data sets before filling it. This is
* needed when reading dat-files generated from msr2data.
*
* @param size number of data sets
*/
void PNonMusrRawRunData::SetSize(const UInt_t size)
{
// first clean up
for (UInt_t i=0; i<fData.size(); i++) {
fData[i].clear();
}
fData.clear();
for (UInt_t i=0; i<fErrData.size(); i++) {
fErrData[i].clear();
}
fErrData.clear();
// set size
fData.resize(size);
fErrData.resize(size);
}
//--------------------------------------------------------------------------
// SetLabel (public)
//--------------------------------------------------------------------------

13
src/classes/PRgeHandler.cpp
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@ -88,7 +88,7 @@ void PXmlRgeHandler::OnEndDocument()
* and sets a proper key.
*
* \param str XML element name
* \param attributes not used
* \param attributes used only for energy_vect
*/
void PXmlRgeHandler::OnStartElement(const Char_t *str, const TList *attributes)
{
@ -564,15 +564,16 @@ Double_t PRgeHandler::GetZmax(const Double_t energy)
{
int idx=-1;
for (int i=0; i<fData.size(); i++) {
if (fabs(fData[i].energy-energy) < 1.0) {
if (fabs(fData[i].energy-energy)*0.001 < 0.9){
idx = i;
break;
}
}
if (idx != -1)
return GetZmax(idx);
return GetZmax(idx);
return -1.0;
return -1;
}
//--------------------------------------------------------------------------
@ -606,7 +607,7 @@ Double_t PRgeHandler::Get_n(const Double_t energy, const Double_t z)
{
int idx=-1;
for (int i=0; i<fData.size(); i++) {
if (fabs(fData[i].energy-energy) < 1.0) {
if (fabs(fData[i].energy-energy)*0.001 < 0.90) {
idx = i;
break;
}
@ -668,7 +669,7 @@ Int_t PRgeHandler::GetEnergyIndex(const Double_t energy)
{
int idx=-1;
for (int i=0; i<fData.size(); i++) {
if (fabs(fData[i].energy-energy) < 1.0) {
if (fabs(fData[i].energy-energy)*0.001 < 0.90) {
idx = i;
break;
}

3
src/classes/PRunAsymmetry.cpp
View File

@ -549,6 +549,9 @@ void PRunAsymmetry::CalcTheory()
*/
Bool_t PRunAsymmetry::PrepareData()
{
if (!fValid)
return false;
// keep the Global block info
PMsrGlobalBlock *globalBlock = fMsrInfo->GetMsrGlobal();

3
src/classes/PRunAsymmetryBNMR.cpp
View File

@ -587,6 +587,9 @@ void PRunAsymmetryBNMR::CalcTheory()
*/
Bool_t PRunAsymmetryBNMR::PrepareData()
{
if (!fValid)
return false;
// keep the Global block info
PMsrGlobalBlock *globalBlock = fMsrInfo->GetMsrGlobal();

3
src/classes/PRunAsymmetryRRF.cpp
View File

@ -531,6 +531,9 @@ void PRunAsymmetryRRF::CalcTheory()
*/
Bool_t PRunAsymmetryRRF::PrepareData()
{
if (!fValid)
return false;
// keep the Global block info
PMsrGlobalBlock *globalBlock = fMsrInfo->GetMsrGlobal();

153
src/classes/PRunDataHandler.cpp
View File

@ -538,6 +538,8 @@ Bool_t PRunDataHandler::ReadFilesMsr()
success = ReadAsciiFile();
} else if (!runList->at(i).GetFileFormat(j)->CompareTo("db")) {
success = ReadDBFile();
} else if (!runList->at(i).GetFileFormat(j)->CompareTo("dat")) {
success = ReadDatFile();
} else {
success = false;
}
@ -1102,6 +1104,8 @@ Bool_t PRunDataHandler::FileExistsCheck(PMsrRunBlock &runInfo, const UInt_t idx)
ext = TString("dat");
else if (!runInfo.GetFileFormat(idx)->CompareTo("db"))
ext = TString("db");
else if (!runInfo.GetFileFormat(idx)->CompareTo("dat"))
ext = TString("dat");
else
success = false;
@ -1126,6 +1130,7 @@ Bool_t PRunDataHandler::FileExistsCheck(PMsrRunBlock &runInfo, const UInt_t idx)
std::cerr << std::endl << ">> MDU-ASCII -> psi mdu ascii file format";
std::cerr << std::endl << ">> ASCII -> column like file format";
std::cerr << std::endl << ">> DB -> triumf db file \"format\"";
std::cerr << std::endl << ">> DAT -> csv like file \"format\" as exported by msr2data.";
std::cerr << std::endl;
return success;
}
@ -4345,6 +4350,154 @@ Bool_t PRunDataHandler::ReadDBFile()
return success;
}
//--------------------------------------------------------------------------
// ReadDatFile (private)
//--------------------------------------------------------------------------
/**
* <p>Reads column like data sets as generated by msr2data with the option
* 'data'. This can be used for the 'non muSR fit' type.
*
* <b>return:</b>
* - true at successful reading,
* - otherwise false.
*/
Bool_t PRunDataHandler::ReadDatFile()
{
Bool_t success = true;
// open file
std::ifstream f;
// open db-file
f.open(fRunPathName.Data(), std::ifstream::in);
if (!f.is_open()) {
std::cerr << std::endl << ">> PRunDataHandler::ReadDatFile **ERROR** Couldn't open data file (" << fRunPathName.Data() << ") for reading, sorry ...";
std::cerr << std::endl;
return false;
}
PRawRunData runData;
runData.fDataNonMusr.SetFromAscii(false);
Int_t lineNo = 0;
Char_t instr[4096];
TString line;
Bool_t headerInfo=true;
// variables needed to tokenize strings
TString tstr;
TObjString *ostr;
TObjArray *tokens = nullptr;
UInt_t noOfDataSets = 0, noOfEntries = 0;
PBoolVector isData;
Double_t dval;
while (!f.eof()) {
// get next line from file
f.getline(instr, sizeof(instr));
line = TString(instr);
lineNo++;
// check if comment line
if (line.BeginsWith("#") || line.BeginsWith("%"))
continue;
// ignore empty lines
if (line.IsWhitespace())
continue;
tokens = line.Tokenize(" \t");
if (tokens == nullptr) { // error
std::cerr << std::endl << ">> PRunDataHandler::ReadDatFile **ERROR** couldn't tokenize the line, in lineNo: " << lineNo;
std::cerr << std::endl << ">> line: '" << line << "'.";
std::cerr << std::endl;
return false;
}
// filter header information
if (headerInfo) {
headerInfo = false;
// filter out all data tags: this labels are used in the msr-file to select the proper data set
// for the dat-files, label and dataTag are the same
noOfEntries = tokens->GetEntries();
for (Int_t i=0; i<noOfEntries; i++) {
ostr = dynamic_cast<TObjString*>(tokens->At(i));
tstr = ostr->GetString();
if (!tstr.EndsWith("Err", TString::kExact)) {
noOfDataSets++;
isData.push_back(true);
runData.fDataNonMusr.AppendDataTag(tstr);
runData.fDataNonMusr.AppendLabel(tstr);
} else {
isData.push_back(false);
}
}
// set the size for the data
runData.fDataNonMusr.SetSize(noOfDataSets);
} else { // deal with data
if (noOfEntries == 0) {
std::cerr << std::endl << ">> PRunDataHandler::ReadDatFile **ERROR** header information is missing.";
std::cerr << std::endl;
return false;
}
if (tokens->GetEntries() != noOfEntries) { // error
std::cerr << std::endl << ">> PRunDataHandler::ReadDatFile **ERROR** data set with wrong number of entries: " << tokens->GetEntries() << ", should be " << noOfEntries << ".";
std::cerr << std::endl << ">> in line: " << lineNo;
std::cerr << std::endl << ">> line: '" << line << "'.";
std::cerr << std::endl;
return false;
}
// fill data and dataErr sets
UInt_t idx = 0;
for (UInt_t i=0; i<noOfEntries; i++) {
// 1st: check that entry is indeed a number
ostr = dynamic_cast<TObjString*>(tokens->At(i));
tstr = ostr->GetString();
if (!tstr.IsFloat()) { // make sure it is a number
std::cerr << std::endl << ">> PRunDataHandler::ReadDatFile **ERROR** data set entry is not a number: " << tstr.Data();
std::cerr << std::endl << ">> in line: " << lineNo;
std::cerr << std::endl;
return false;
}
dval = tstr.Atof();
if (isData[i]) {
runData.fDataNonMusr.AppendSubData(idx, dval);
idx++;
} else { // error value
if (isData[i-1] == 1) { // Err or PosErr hence keep it
runData.fDataNonMusr.AppendSubErrData(idx-1, dval);
}
}
}
}
// cleanup
if (tokens) {
delete tokens;
tokens = nullptr;
}
}
f.close();
// got through all the data sets and if there is NO error vector set it to '0.0'
for (UInt_t i=0; i<noOfDataSets; i++) {
if (runData.fDataNonMusr.GetErrData()->at(i).size() == 0) {
for (UInt_t j=0; j<runData.fDataNonMusr.GetData()->at(i).size(); j++) {
runData.fDataNonMusr.AppendSubErrData(i, 0.0);
}
}
}
// keep run name
runData.SetRunName(fRunName);
fData.push_back(runData);
return success;
}
//--------------------------------------------------------------------------
// WriteMusrRootFile (private)
//--------------------------------------------------------------------------

2
src/classes/PRunListCollection.cpp
View File

@ -151,7 +151,7 @@ Bool_t PRunListCollection::Add(Int_t runNo, EPMusrHandleTag tag)
success = false;
break;
case PRUN_NON_MUSR:
fRunNonMusrList.push_back(new PRunNonMusr(fMsrInfo, fData, runNo, tag));
fRunNonMusrList.push_back(new PRunNonMusr(fMsrInfo, fData, runNo, tag, fTheoAsData));
if (!fRunNonMusrList[fRunNonMusrList.size()-1]->IsValid())
success = false;
break;

3
src/classes/PRunMuMinus.cpp
View File

@ -458,6 +458,9 @@ Bool_t PRunMuMinus::PrepareData()
{
Bool_t success = true;
if (!fValid)
return false;
// keep the Global block info
PMsrGlobalBlock *globalBlock = fMsrInfo->GetMsrGlobal();

35
src/classes/PRunNonMusr.cpp
View File

@ -60,7 +60,8 @@ PRunNonMusr::PRunNonMusr() : PRunBase()
* \param runNo number of the run within the msr-file
* \param tag tag showing what shall be done: kFit == fitting, kView == viewing
*/
PRunNonMusr::PRunNonMusr(PMsrHandler *msrInfo, PRunDataHandler *rawData, UInt_t runNo, EPMusrHandleTag tag) : PRunBase(msrInfo, rawData, runNo, tag)
PRunNonMusr::PRunNonMusr(PMsrHandler *msrInfo, PRunDataHandler *rawData, UInt_t runNo, EPMusrHandleTag tag, Bool_t theoAsData) :
PRunBase(msrInfo, rawData, runNo, tag), fTheoAsData(theoAsData)
{
// get the proper run
fRawRunData = fRawData->GetRunData(*(fRunInfo->GetRunName()));
@ -198,6 +199,9 @@ Bool_t PRunNonMusr::PrepareData()
{
Bool_t success = true;
if (!fValid)
return false;
if (fRunInfo->GetRunNameSize() > 1) { // ADDRUN present which is not supported for NonMusr
std::cerr << std::endl << ">> PRunNonMusr::PrepareData(): **WARNING** ADDRUN NOT SUPPORTED FOR THIS FIT TYPE, WILL IGNORE IT." << std::endl;
}
@ -442,15 +446,26 @@ Bool_t PRunNonMusr::PrepareViewData()
else
xStep = (xMax-xMin)/1000.0;
Double_t xx = xMin;
do {
// fill x-vector
fData.AppendXTheoryValue(xx);
// fill y-vector
fData.AppendTheoryValue(fTheory->Func(xx, par, fFuncValues));
// calculate next xx
xx += xStep;
} while (xx < xMax);
if (fTheoAsData) {
Double_t xx;
for (UInt_t i=0; i<fRawRunData->fDataNonMusr.GetData()->at(xIndex).size(); i++) {
// fill x-vector
xx = fRawRunData->fDataNonMusr.GetData()->at(xIndex).at(i);
fData.AppendXTheoryValue(xx);
// fill y-vector
fData.AppendTheoryValue(fTheory->Func(xx, par, fFuncValues));
}
} else {
Double_t xx = xMin;
do {
// fill x-vector
fData.AppendXTheoryValue(xx);
// fill y-vector
fData.AppendTheoryValue(fTheory->Func(xx, par, fFuncValues));
// calculate next xx
xx += xStep;
} while (xx < xMax);
}
// clean up
par.clear();

3
src/classes/PRunSingleHisto.cpp
View File

@ -700,6 +700,9 @@ Bool_t PRunSingleHisto::PrepareData()
{
Bool_t success = true;
if (!fValid)
return false;
// keep the Global block info
PMsrGlobalBlock *globalBlock = fMsrInfo->GetMsrGlobal();

3
src/classes/PRunSingleHistoRRF.cpp
View File

@ -431,6 +431,9 @@ Bool_t PRunSingleHistoRRF::PrepareData()
{
Bool_t success = true;
if (!fValid)
return false;
// keep the Global block info
PMsrGlobalBlock *globalBlock = fMsrInfo->GetMsrGlobal();

1
src/external/CMakeLists.txt vendored
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@ -4,6 +4,7 @@ if (ASlibs)
add_subdirectory(libPhotoMeissner)
add_subdirectory(libSpinValve)
add_subdirectory(libGbGLF)
add_subdirectory(DepthProfile)
endif (ASlibs)
if (BMWlibs)

1
src/external/DepthProfile/CMakeLists.txt vendored Normal file
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@ -0,0 +1 @@
add_subdirectory(src)

23
src/external/DepthProfile/README vendored Normal file
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@ -0,0 +1,23 @@
For details about the idea behind see:
A.F.A. Simões, et al.
Muon implantation experiments in films: obtaining depth-resolved information
Review of Scientific Instruments. 2020; 91(2): 023906 (7 pp.).
A few words about the details of the current implementation:
1) In order to handle the necessary rge-files (trim.sp stopping profiles), a
file depth_profile_startup.xml has to be present in the working directory.
In this xml-file the path to the rge-files and its energies are described.
Details about the xml startup file can be found here:
http://lmu.web.psi.ch/musrfit/user/html/user-manual.html#rge-file-handler-for-low-energy-mgrsr
2) For all these models, rather than the rge-files, the normalized cumulative
frequency distributions, i.e. cfd[i] = sum_{k=0}^i rge[k] / sum_{k=0}^max rge[k]
are needed. Hence the cfd's are calculated in the constructor and used
throughout afterwards.
3) under ./test you will find one example.
4) Under <musrfit>/doc/example/DepthProfiles, where <musrfit> is the home
directory of musrfit, you will find a couple more examples.

88
src/external/DepthProfile/inc/PDepthProfile.h vendored Normal file
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@ -0,0 +1,88 @@
/***************************************************************************
PDepthProfile.h
Author: Andreas Suter
e-mail: andreas.suter@psi.ch
***************************************************************************/
/***************************************************************************
* Copyright (C) 2013-2023 by Andreas Suter *
* andreas.suter@psi.ch *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _PDEPTHPROFILE_H_
#define _PDEPTHPROFILE_H_
#include <vector>
#include "PUserFcnBase.h"
#include "PRgeHandler.h"
class PDepthProfileGlobal
{
public:
PDepthProfileGlobal();
virtual ~PDepthProfileGlobal();
Bool_t IsValid() { return fValid; }
virtual Int_t GetEnergyIndex(const Double_t energy) { return fRgeHandler->GetEnergyIndex(energy); }
virtual Double_t GetMuonStoppingDensity(const Int_t energyIndex, const Double_t z) const { return fRgeHandler->Get_n(energyIndex, z); }
virtual Double_t GetStoppingProbability(double a, double b, Double_t energy) const;
virtual Double_t GetZmax(const Double_t energy);
private:
Bool_t fValid{true};
mutable std::vector<Double_t> fPreviousParam;
PRgeHandler *fRgeHandler{nullptr};
PRgeDataList fCfd;
Int_t GetPosIdx(const double z, const Int_t energyIdx) const;
ClassDef(PDepthProfileGlobal, 1)
};
class PDepthProfile : public PUserFcnBase
{
public:
PDepthProfile() {}
virtual ~PDepthProfile();
virtual Bool_t NeedGlobalPart() const { return true; }
virtual void SetGlobalPart(std::vector<void*> &globalPart, UInt_t idx);
virtual Bool_t GlobalPartIsValid() const;
virtual Double_t operator()(Double_t energy, const std::vector<Double_t> &param) const;
private:
Bool_t fValid{true};
Bool_t fInvokedGlobal{false};
Int_t fIdxGlobal;
mutable std::vector<Double_t> fPreviousParam;
PDepthProfileGlobal *fDepthProfileGlobal{nullptr};
// definition of the class for the ROOT dictionary
ClassDef(PDepthProfile, 1)
};
#endif // _PDEPTHPROFILE_H_

39
src/external/DepthProfile/inc/PDepthProfileLinkDef.h vendored Normal file
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@ -0,0 +1,39 @@
/***************************************************************************
PDepthProfileLinkDef.h
Author: Andreas Suter
e-mail: andreas.suter@psi.ch
***************************************************************************/
/***************************************************************************
* Copyright (C) 2013-2023 by Andreas Suter *
* andreas.suter@psi.ch *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifdef __CINT__
#pragma link off all globals;
#pragma link off all classes;
#pragma link off all functions;
#pragma link C++ class PDepthProfileGlobal+;
#pragma link C++ class PDepthProfile+;
#endif

78
src/external/DepthProfile/src/CMakeLists.txt vendored Normal file
View File

@ -0,0 +1,78 @@
# - DepthProfile library ------------------------------------------------------
#--- generate necessary dictionaries ------------------------------------------
set(MUSRFIT_INC ${CMAKE_SOURCE_DIR}/src/include)
set(DEPTH_PROFILE_INC ${CMAKE_CURRENT_SOURCE_DIR}/../inc)
# ROOT requires that the dictonary header files are found at configuration time.
# Hence, target_include_directories cannot be used here because, targets are
# setup only afterwards.
include_directories(${DEPTH_PROFILE_INC})
root_generate_dictionary(
PDepthProfileDict
PDepthProfile.h
OPTIONS
-I${FFTW3_INCLUDE_DIR}
-I${MUSRFIT_INC}
-I${DEPTH_PROFILE_INC}
-inlineInputHeader
LINKDEF ${DEPTH_PROFILE_INC}/PDepthProfileLinkDef.h
MODULE PDepthProfile
)
#--- create pkg-config info ---------------------------------------------------
set(prefix "${CMAKE_INSTALL_PREFIX}")
set(exec_prefix "\$\{prefix\}")
set(libdir "\$\{exec_prefix\}/lib")
set(includedir "\$\{prefix\}/include")
set(P_DEPTH_PROFILE_VERSION "1.0.0")
set(P_DEPTH_PROFILE_LIBRARY_NAME "PDepthProfile")
configure_file("PDepthProfile.pc.in" "PDepthProfile.pc" @ONLY)
#--- lib creation -------------------------------------------------------------
add_library(PDepthProfile SHARED
PDepthProfile.cpp
PDepthProfileDict.cxx
)
#--- set target properties, e.g. version --------------------------------------
set_target_properties(PDepthProfile
PROPERTIES
VERSION ${P_DEPTH_PROFILE_VERSION}
)
#--- make sure that the include directory is found ----------------------------
target_include_directories(
PDepthProfile BEFORE PRIVATE
$<BUILD_INTERFACE:${FFTW3_INCLUDE_DIR}>
$<BUILD_INTERFACE:${MUSRFIT_INC}>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/../inc>
)
#--- add library dependencies -------------------------------------------------
target_link_libraries(PDepthProfile ${FFTW3_LIBRARY} ${ROOT_LIBRARIES} PRgeHandler PUserFcnBase)
#--- install PDepthProfile solib ----------------------------------------------
install(TARGETS PDepthProfile DESTINATION lib)
#--- install root pcm's and rootmaps ------------------------------------------
install(
FILES ${CMAKE_CURRENT_BINARY_DIR}/libPDepthProfile_rdict.pcm
${CMAKE_CURRENT_BINARY_DIR}/libPDepthProfile.rootmap
DESTINATION lib
)
#--- install DepthProfile header ----------------------------------------------
install(
FILES
${CMAKE_CURRENT_SOURCE_DIR}/../inc/PDepthProfile.h
DESTINATION
include
)
#--- install pkg-config info --------------------------------------------------
install(
FILES ${CMAKE_CURRENT_BINARY_DIR}/PDepthProfile.pc
DESTINATION lib/pkgconfig
)

268
src/external/DepthProfile/src/PDepthProfile.cpp vendored Normal file
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@ -0,0 +1,268 @@
/***************************************************************************
PDepthProfile.cpp
Authors: Maria Martins, Andreas Suter
e-mail: maria.martins@psi.ch, andreas.suter@psi.ch
***************************************************************************/
/***************************************************************************
* Copyright (C) 2009-2023 by Andreas Suter *
* andreas.suter@psi.ch *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include <cassert>
#include <cmath>
#include <iostream>
#include <TSAXParser.h>
#include <TMath.h>
#include "PDepthProfile.h"
ClassImp(PDepthProfileGlobal)
//--------------------------------------------------------------------------
// Constructor (PDepthProfileGlobal)
//--------------------------------------------------------------------------
/**
* <p>Constructor. Reads the necessary rge-files based on the depth_profile_startup.xml
*/
PDepthProfileGlobal::PDepthProfileGlobal() {
// load all the TRIM.SP rge-files
fRgeHandler = new PRgeHandler("./depth_profile_startup.xml");
if (!fRgeHandler->IsValid()) {
std::cout << std::endl << ">> PDepthProfileGlobal::PDepthProfileGlobal **PANIC ERROR**";
std::cout << std::endl << ">> rge data handler too unhappy. Will terminate unfriendly, sorry.";
std::cout << std::endl;
fValid = false;
}
// calculate cumulative frequency distribution of all the rge-files
PRgeDataList rgeData = fRgeHandler->GetRgeData();
fCfd.resize(fRgeHandler->GetNoOfRgeDataSets());
for (unsigned int i=0; i<fCfd.size(); i++) {
fCfd[i].energy = rgeData[i].energy;
fCfd[i].depth = rgeData[i].depth;
fCfd[i].nn.resize(rgeData[i].nn.size());
double dval=0.0;
for (unsigned int j=0; j<fCfd[i].nn.size(); j++) {
dval += rgeData[i].nn[j];
fCfd[i].nn[j] = dval; // store cfd value in nn
}
}
}
//--------------------------------------------------------------------------
// Destructor (PDepthProfileGlobal)
//--------------------------------------------------------------------------
/**
* <p>Clean up the rge-handler.
*/
PDepthProfileGlobal::~PDepthProfileGlobal() {
if (fRgeHandler) {
delete fRgeHandler;
fRgeHandler = nullptr;
}
}
//++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
ClassImp(PDepthProfile)
//--------------------------------------------------------------------------
// Destructor (PDepthProfile)
//--------------------------------------------------------------------------
/**
* <p>Clean up the global part.
*/
PDepthProfile::~PDepthProfile() {
if ((fDepthProfileGlobal != nullptr) && fInvokedGlobal) {
delete fDepthProfileGlobal;
fDepthProfileGlobal = nullptr;
}
}
//--------------------------------------------------------------------------
// SetGlobalPart : public
//--------------------------------------------------------------------------
/**
* <p>
*
* @param globalPart
* @param idx
*
* @return
*/
void PDepthProfile::SetGlobalPart(std::vector<void *> &globalPart, UInt_t idx) {
fIdxGlobal = static_cast<Int_t>(idx);
if ((Int_t) globalPart.size() <= fIdxGlobal) {
fDepthProfileGlobal = new PDepthProfileGlobal();
if (fDepthProfileGlobal == nullptr) {
fValid = false;
std::cerr << std::endl
<< ">> PDepthProfile::SetGlobalPart(): **ERROR** Couldn't invoke global user function object, sorry ..."
<< std::endl;
} else if (!fDepthProfileGlobal->IsValid()) {
fValid = false;
std::cerr << std::endl
<< ">> PDepthProfile::SetGlobalPart(): **ERROR** initialization of global user function object failed, sorry ..."
<< std::endl;
} else {
fValid = true;
fInvokedGlobal = true;
globalPart.resize(fIdxGlobal + 1);
globalPart[fIdxGlobal] = dynamic_cast<PDepthProfileGlobal *>(fDepthProfileGlobal);
}
} else {
fValid = true;
fDepthProfileGlobal = (PDepthProfileGlobal * )
globalPart[fIdxGlobal];
}
}
//--------------------------------------------------------------------------
// GlobalPartIsValid : public
//--------------------------------------------------------------------------
/**
* <p>Returns true if the global part is valid. It is also checking if all
* muon stopping profiles have been loaded, if present.
*
* @return true if the global part is valid, false otherwise.
*/
Bool_t PDepthProfile::GlobalPartIsValid() const {
return (fValid && fDepthProfileGlobal->IsValid());
}
//--------------------------------------------------------------------------
// GetPosIdx() : private
//--------------------------------------------------------------------------
/**
* <p>Get the position index for a given distance 'z' and a given implantation
* energy index.
*
* @param z distance for which the index is requested
* @param energyIdx implantation energy index
*
* @return position index
*/
Int_t PDepthProfileGlobal::GetPosIdx(const double z, const Int_t energyIdx) const
{
Int_t idx=-1;
for (UInt_t i=0; i<fCfd[energyIdx].depth.size(); i++) {
if (z <= fCfd[energyIdx].depth[i]) {
idx = i;
break;
}
}
if (idx==-1) // z larger than any found 'z' value, hence put it to zMax
idx = fCfd[energyIdx].depth[fCfd[energyIdx].depth.size()-1];
return idx;
}
//--------------------------------------------------------------------------
// GetStoppingProbability() : public
//--------------------------------------------------------------------------
/**
* <p>Calculates the stopping probability from a to b for a given implantation
* energy, i.e.
*
* p = int_a^b n(z, E) dz
*
* @param a starting point in distance
* @param b stopping point in distance
* @param energy implantation energy in (eV)
*
* @return stopping probability p.
*/
Double_t PDepthProfileGlobal::GetStoppingProbability(double a, double b, Double_t energy) const {
Int_t idx = fRgeHandler->GetEnergyIndex(energy);
if (idx == -1) {
std::cerr << "**WARNING** couldn't find energy " << energy << " (eV) in the rge-files provided." << std::endl;
return 0.0;
}
const Int_t idx_a = GetPosIdx(a, idx); // get index for distance a from cfd(z, E)
const Int_t idx_b = GetPosIdx(b, idx); // get index for distance b from cfd(z, E)
return fCfd[idx].nn[idx_b] - fCfd[idx].nn[idx_a];
}
//--------------------------------------------------------------------------
// GetZmax() : public
//--------------------------------------------------------------------------
/**
* <p>Returns the maximal distance present in an rge-dataset for a given energy.
*
* @param energy in (eV) of the rge-dataset
*
* @return maximal distance in the rge-dataset, or 1e4 if energy is not found.
*/
Double_t PDepthProfileGlobal::GetZmax(const Double_t energy)
{
const Int_t idx=GetEnergyIndex(energy);
if (idx == -1) return 10000.0;
const Int_t maxDepthIdx = fCfd[idx].depth.size()-1;
return fCfd[idx].depth[maxDepthIdx];
}
//--------------------------------------------------------------------------
// operator() : public
//--------------------------------------------------------------------------
/**
* <p> calculate the stopping fraction amplitude f(E) for the given parameter:
*
* f(E) = [cfd(x1, E)-cfd(0, E)] f(0, x1) + [cfd(x2, E)-cfd(x1, E)] f(x1, x2) + ...
*
* @param energy in (keV)
* @param param {f1, f2, ..., f_n, x1, ..., x_(n-1)}
*
* @return f(E)
*/
Double_t PDepthProfile::operator()(Double_t energy, const std::vector <Double_t> &param) const {
// verify number of parameters: 2n+1, i.e. it has to be an odd number of parameters
// parameters: {f1, f2, ..., f_n, x1, ..., x_(n-1)}
assert(param.size() > 2);
assert(((param.size() - 1) % 2) == 0);
// number of steps: n+1
int n = (param.size() - 1) / 2;
energy *= 1000.0; // keV -> eV
double fE = param[0]*fDepthProfileGlobal->GetStoppingProbability(0.0, param[n+1], energy); // z=0..x_1
for (int i=n+1; i<param.size()-1; i++) {
fE += param[i-n]*fDepthProfileGlobal->GetStoppingProbability(param[i], param[i+1], energy); // z=x_i..x_(i+1)
}
double zMax = fDepthProfileGlobal->GetZmax(energy);
fE += param[n]*fDepthProfileGlobal->GetStoppingProbability(param[param.size()-1], zMax, energy); // z=x_(n-1)..infinity
return fE;
}

10
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prefix=@prefix@
exec_prefix=@exec_prefix@
libdir=@libdir@
includedir=@includedir@
Name: PDepthProfile
Description: C++ shared library providing the depth profile fitter class
Version: @P_DEPTH_PROFILE_VERSION@
Libs: -L${libdir} -l@P_DEPTH_PROFILE_LIBRARY_NAME@
Cflags: -I${includedir}

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n/a
###############################################################
FITPARAMETER
# Nr. Name Value Step Pos_Error Boundaries
1 f1 0.379 -0.014 0.014
2 f2 0.1866 -0.0034 0.0034
3 f3 0.0201 -0.0024 0.0024
4 x1 55.9 1.1 none
5 x2 103.80 0.19 none
###############################################################
THEORY
userFcn libPDepthProfile PDepthProfile 1 2 3 4 5
###############################################################
RUN data/1300Ar_PECVD_Escan_260K_5G_withDiaFrac MUE4 PSI DAT (name beamline institute data-file-format)
fittype 8 (non muSR fit)
map 0 0 0 0 0 0 0 0 0 0
xy-data dataE DiaFrac
fit 1 25
packing 1
###############################################################
COMMANDS
MINIMIZE
#HESSE
MINOS
SAVE
###############################################################
PLOT 8 (non muSR plot)
runs 1
range 0 25
###############################################################
STATISTIC --- 2023-02-16 15:20:11
chisq = 28.3, NDF = 10, chisq/NDF = 2.831612

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15. 2257
25. 2936
35. 3431
45. 3826
55. 4232
65. 4472
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105. 5117
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25. 20
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45. 23
55. 38
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635. 832
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685. 1094
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705. 1264
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745. 1650
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15. 13
25. 11
35. 8
45. 18
55. 13
65. 12
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DEPTH PARTICLES
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DEPTH PARTICLES
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src/external/DepthProfile/test/TRIMSP/SiC_1300x_52nm_48nm_E9000.rge vendored Normal file
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16
src/external/DepthProfile/test/data/1300Ar_PECVD_Escan_260K_5G_withDiaFrac.dat vendored Normal file
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dataT dataTErr dataB dataE dataTr dataRALRAR dataRATRAB dataSpinRot Asym_Mu Asym_MuPosErr Asym_MuNegErr Lambda_Mu Lambda_MuPosErr Lambda_MuNegErr freq_Mu1 freq_Mu1PosErr freq_Mu1NegErr Asym_muon Asym_muonPosErr Asym_muonNegErr Sigma_muon Sigma_muonPosErr Sigma_muonNegErr field fieldPosErr fieldNegErr ph_LR ph_LRPosErr ph_LRNegErr Alpha_LR Alpha_LRPosErr Alpha_LRNegErr relph_TB relph_TBPosErr relph_TBNegErr relph_TB_Mu relph_TB_MuPosErr relph_TB_MuNegErr Alpha_TB Alpha_TBPosErr Alpha_TBNegErr Zero ZeroPosErr ZeroNegErr freqMu2 freqMu2PosErr freqMu2NegErr Asym_MuSiO2 Asym_MuSiO2PosErr Asym_MuSiO2NegErr Lambda_MuSiO2 Lambda_MuSiO2PosErr Lambda_MuSiO2NegErr freqMuSiO2 freqMuSiO2PosErr freqMuSiO2NegErr CHISQ NDF CHISQred RUN AsymCorrected AsymCorrectedErr AsymAg DiaFrac DiaFracErr
260.0000 0.0060 4.4400 6.9980 16.4946 -0.0100 -0.0090 -10.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 9.2100 0.0000 0.0000 0.0730 0.0012 0.0011 0.1359 0.0079 0.0080 7.0900 0.0270 0.0310 363.4600 0.8000 0.7800 1.0099 0.0019 0.0019 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9959 0.0017 0.0017 0.0000 0.0000 0.0000 10.8000 0.0000 0.0000 0.0813 0.0102 0.0090 2.1300 0.3700 0.3200 0.0000 0.0000 0.0000 2320.3999 2224.0000 1.0433 3817.0000 0.0565 0.0012 0.2019 0.2797 0.0059
260.0000 0.0050 4.4500 8.9961 16.4946 -0.0100 -0.0090 -10.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 9.2100 0.0000 0.0000 0.0608 0.0011 0.0011 0.1190 0.0097 0.0100 7.1670 0.0110 0.0120 359.4000 0.7900 0.7900 1.0072 0.0018 0.0018 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9898 0.0016 0.0016 0.0000 0.0000 0.0000 10.8000 0.0000 0.0000 0.0765 0.0058 0.0055 1.1400 0.1400 0.1300 0.0000 0.0000 0.0000 2366.3999 2224.0000 1.0640 3818.0000 0.0462 0.0011 0.2110 0.2190 0.0052
260.0000 0.0060 4.4510 9.9949 16.4946 -0.0100 -0.0090 -10.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 9.2100 0.0000 0.0000 0.0586 0.0011 0.0011 0.1100 0.0110 0.0110 7.1628 0.0096 0.0101 358.3500 0.8000 0.8000 1.0097 0.0018 0.0018 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9877 0.0016 0.0016 0.0000 0.0000 0.0000 10.8000 0.0000 0.0000 0.0781 0.0054 0.0051 1.1600 0.1200 0.1100 0.0000 0.0000 0.0000 2404.7000 2224.0000 1.0812 3819.0000 0.0445 0.0011 0.2139 0.2080 0.0051
260.0000 0.0050 4.4480 10.9940 16.4946 -0.0100 -0.0090 -10.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 9.2100 0.0000 0.0000 0.0565 0.0011 0.0011 0.1060 0.0110 0.0110 7.0730 0.0200 0.0210 358.7500 0.9000 0.9000 1.0121 0.0018 0.0018 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9882 0.0016 0.0016 0.0000 0.0000 0.0000 10.8000 0.0000 0.0000 0.0910 0.0081 0.0075 1.9600 0.2400 0.2100 0.0000 0.0000 0.0000 2387.1001 2224.0000 1.0733 3820.0000 0.0427 0.0011 0.2161 0.1977 0.0051
260.0000 0.0050 4.4500 11.9930 16.4946 -0.0090 -0.0090 -10.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 9.2100 0.0000 0.0000 0.0548 0.0011 0.0011 0.1210 0.0100 0.0110 7.1610 0.0140 0.0160 358.4900 0.8800 0.8700 1.0151 0.0018 0.0018 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9912 0.0016 0.0016 0.0000 0.0000 0.0000 10.8000 0.0000 0.0000 0.0470 0.0053 0.0048 1.0500 0.2000 0.1600 0.0000 0.0000 0.0000 2299.3000 2224.0000 1.0339 3821.0000 0.0412 0.0011 0.2178 0.1893 0.0051
260.0000 0.0060 4.4500 12.9921 16.4946 -0.0090 -0.0090 -10.0000 0.0237 0.0039 0.0037 0.7300 0.1600 0.1400 0.0000 0.0000 0.0000 0.0432 0.0013 0.0013 0.1090 0.0150 0.0160 6.6470 0.0520 0.0520 362.9000 1.5000 1.5000 1.0200 0.0022 0.0022 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9875 0.0018 0.0018 0.0000 0.0000 0.0000 9.9840 0.0260 0.0270 0.0650 0.0180 0.0140 3.5200 0.9800 0.7700 0.0000 0.0000 0.0000 2256.7000 2221.0000 1.0161 3822.0000 0.0298 0.0013 0.2191 0.1358 0.0059
260.0000 0.0050 4.4520 13.9909 16.4946 -0.0100 -0.0090 -10.0000 0.0320 0.0058 0.0049 2.0300 0.6100 0.4500 9.1330 0.0770 0.0820 0.0375 0.0011 0.0010 0.0950 0.0170 0.0190 7.5000 0.0000 0.0000 -5.9000 1.1000 1.1000 1.0125 0.0017 0.0017 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9840 0.0015 0.0015 0.0000 0.0000 0.0000 9.9900 0.0530 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2252.0000 2223.0000 1.0130 3823.0000 0.0241 0.0011 0.2200 0.1097 0.0050
260.0000 0.0050 4.4500 14.9898 16.4946 -0.0100 -0.0090 -10.0000 0.0550 0.0160 0.0110 4.2000 1.6000 1.0000 9.1090 0.0940 0.1010 0.0329 0.0011 0.0011 0.1240 0.0170 0.0180 7.5000 0.0000 0.0000 -4.6000 1.4000 1.3000 1.0149 0.0017 0.0017 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9859 0.0015 0.0015 0.0000 0.0000 0.0000 10.1400 0.1000 0.1300 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2219.8000 2223.0000 0.9986 3824.0000 0.0196 0.0011 0.2208 0.0888 0.0050
260.0000 0.0060 4.4500 15.9972 16.4946 -0.0100 -0.0090 -10.0000 0.0240 0.0050 0.0040 1.6400 0.5900 0.3800 9.0870 0.0610 0.0620 0.0293 0.0011 0.0011 0.1460 0.0190 0.0200 7.5000 0.0000 0.0000 -8.4000 1.6000 1.6000 1.0168 0.0019 0.0018 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9807 0.0015 0.0015 0.0000 0.0000 0.0000 10.0240 0.0520 0.0600 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2290.2000 2223.0000 1.0302 3825.0000 0.0160 0.0011 0.2214 0.0724 0.0050
260.0000 0.0060 4.4600 16.9959 16.4946 -0.0100 -0.0090 -10.0000 0.0455 0.0110 0.0081 2.8000 1.0000 0.7200 0.0000 0.0000 0.0000 0.0212 0.0011 0.0011 0.0770 0.0320 0.0500 7.5000 0.0000 0.0000 -12.3000 2.2000 2.2000 1.0182 0.0019 0.0018 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9827 0.0014 0.0014 0.0000 0.0000 0.0000 9.2480 0.0670 0.0590 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2312.0000 2224.0000 1.0396 3826.0000 0.0080 0.0011 0.2218 0.0359 0.0050
260.0000 0.0060 4.4590 17.9950 16.4946 -0.0090 -0.0090 -10.0000 0.0850 0.0250 0.0190 7.0000 1.7000 1.4000 0.0000 0.0000 0.0000 0.0194 0.0013 0.0012 0.0950 0.0320 0.0420 6.9900 0.3200 0.3400 355.5000 5.2000 5.0000 1.0173 0.0019 0.0019 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9846 0.0023 0.0021 0.0000 0.0000 0.0000 9.5800 0.1700 0.1700 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2096.3999 2223.0000 0.9431 3827.0000 0.0062 0.0013 0.2221 0.0278 0.0059
260.0000 0.0060 4.4600 18.9939 16.4946 -0.0100 -0.0090 -10.0000 0.0540 0.0250 0.0160 5.3000 2.4000 1.7000 0.0000 0.0000 0.0000 0.0205 0.0020 0.0017 0.1080 0.0400 0.0490 6.6700 0.4100 0.4500 358.4000 6.6000 6.3000 1.0209 0.0027 0.0025 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9832 0.0033 0.0028 0.0000 0.0000 0.0000 9.1400 0.2100 0.1900 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2133.8000 2223.0000 0.9599 3828.0000 0.0073 0.0020 0.2224 0.0327 0.0090
260.0000 0.0040 4.4500 19.9932 16.4946 -0.0100 -0.0090 -10.0000 0.0920 0.0550 0.0330 8.7000 3.5000 2.9000 0.0000 0.0000 0.0000 0.0173 0.0014 0.0014 0.1050 0.0420 0.0570 7.1600 0.0000 0.0000 -9.5000 3.4000 3.4000 1.0189 0.0024 0.0023 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9887 0.0018 0.0018 0.0000 0.0000 0.0000 9.3800 0.2100 0.2000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2261.3999 2224.0000 1.0168 3829.0000 0.0041 0.0014 0.2226 0.0184 0.0063
260.0000 0.0040 4.4500 20.9920 16.4946 -0.0090 -0.0090 -10.0000 0.0292 0.0101 0.0076 2.0900 0.9000 0.6500 9.0670 0.0830 0.0790 0.0199 0.0015 0.0014 0.1640 0.0380 0.0370 7.1600 0.0000 0.0000 -12.2000 2.7000 2.7000 1.0147 0.0024 0.0022 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9891 0.0018 0.0018 0.0000 0.0000 0.0000 10.8640 0.0700 0.0610 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2157.5000 2223.0000 0.9705 3830.0000 0.0067 0.0015 0.2228 0.0300 0.0067
260.0000 0.0060 4.4490 21.9912 16.4946 -0.0090 -0.0090 -10.0000 0.0364 0.0094 0.0090 2.7000 0.8300 0.8000 9.1320 0.0840 0.0800 0.0193 0.0014 0.0013 0.1550 0.0350 0.0350 7.1600 0.0000 0.0000 -7.6000 2.7000 2.7000 1.0140 0.0022 0.0021 -90.0000 0.0000 0.0000 90.0000 0.0000 0.0000 0.9907 0.0017 0.0017 0.0000 0.0000 0.0000 10.8540 0.0830 0.1010 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 2162.2000 2223.0000 0.9726 3831.0000 0.0061 0.0014 0.2229 0.0273 0.0063

35
src/external/DepthProfile/test/depth_profile_startup.xml vendored Normal file
View File

@ -0,0 +1,35 @@
<?xml version="1.0" encoding="UTF-8"?>
<nonlocal xmlns="http://nemu.web.psi.ch/musrfit/nonlocal">
<comment>
TrimSp information
</comment>
<trim_sp>
<data_path>./TRIMSP/</data_path>
<rge_fln_pre>SiC_1300x_52nm_48nm_E</rge_fln_pre>
<energy_list>
<energy>1000</energy>
<energy>2000</energy>
<energy>3000</energy>
<energy>4000</energy>
<energy>5000</energy>
<energy>6000</energy>
<energy>7000</energy>
<energy>8000</energy>
<energy>9000</energy>
<energy>10000</energy>
<energy>11000</energy>
<energy>12000</energy>
<energy>13000</energy>
<energy>14000</energy>
<energy>15000</energy>
<energy>16000</energy>
<energy>17000</energy>
<energy>17000</energy>
<energy>18000</energy>
<energy>19000</energy>
<energy>20000</energy>
<energy>21000</energy>
<energy>22000</energy>
</energy_list>
</trim_sp>
</nonlocal>

2
src/external/DummyUserFcn/src/PDummyUserFcn.pc.in vendored
View File

@ -4,7 +4,7 @@ libdir=@libdir@
includedir=@includedir@
Name: PDummyUserFcn
Description: C++ shared library providing the spin valve fitter class
Description: C++ shared library providing the dummy user fcn fitter class
Version: @P_DUMMY_USER_FUNC_VERSION@
Libs: -L${libdir} -l@P_DUMMY_USER_FUNC_LIBRARY_NAME@
Cflags: -I${includedir}

3
src/include/PMusr.h
View File

@ -294,6 +294,7 @@ class PNonMusrRawRunData {
virtual const std::vector<PDoubleVector>* GetErrData() { return &fErrData; }
virtual void SetFromAscii(const Bool_t bval) { fFromAscii = bval; }
virtual void SetSize(const UInt_t size);
virtual void AppendLabel(const TString str) { fLabels.push_back(str); }
virtual void SetLabel(const UInt_t idx, const TString str);
virtual void AppendDataTag(const TString str) { fDataTags.push_back(str); }
@ -303,7 +304,7 @@ class PNonMusrRawRunData {
virtual void AppendSubErrData(const UInt_t idx, const Double_t dval);
private:
Bool_t fFromAscii; ///< if true: data file was an ascii input file, otherwise it is a db input file
Bool_t fFromAscii; ///< if true: data file was an ascii input file, otherwise it is a db/dat input file
PStringVector fLabels; ///< vector of all labels (used for x-, y-axis title in view)
PStringVector fDataTags; ///< vector of all data tags
std::vector<PDoubleVector> fData; ///< vector of all data

1
src/include/PRgeHandler.h
View File

@ -109,6 +109,7 @@ class PRgeHandler : public TObject
virtual ~PRgeHandler() {}
virtual bool IsValid() { return fValid; }
virtual UInt_t GetNoOfRgeDataSets() { return (UInt_t)fData.size(); }
virtual PRgeDataList GetRgeData() { return fData; }
virtual Double_t GetZmax(const Double_t energy);
virtual Double_t GetZmax(const Int_t idx);

1
src/include/PRunDataHandler.h
View File

@ -89,6 +89,7 @@ class PRunDataHandler
virtual Bool_t ReadMduAsciiFile();
virtual Bool_t ReadAsciiFile();
virtual Bool_t ReadDBFile();
virtual Bool_t ReadDatFile();
virtual Bool_t WriteMusrRootFile(TString fln="");
virtual Bool_t WriteRootFile(TString fln="");

3
src/include/PRunNonMusr.h
View File

@ -40,7 +40,7 @@ class PRunNonMusr : public PRunBase
{
public:
PRunNonMusr();
PRunNonMusr(PMsrHandler *msrInfo, PRunDataHandler *rawData, UInt_t runNo, EPMusrHandleTag tag);
PRunNonMusr(PMsrHandler *msrInfo, PRunDataHandler *rawData, UInt_t runNo, EPMusrHandleTag tag, Bool_t theoAsData);
virtual ~PRunNonMusr();
virtual Double_t CalcChiSquare(const std::vector<Double_t>& par);
@ -65,6 +65,7 @@ class PRunNonMusr : public PRunBase
UInt_t fNoOfFitBins; ///< number of bins to be be fitted
Int_t fPacking; ///< packing for this particular run. Either given in the RUN- or GLOBAL-block.
Bool_t fTheoAsData; ///< true=only calculate the theory points at the data points, false=calculate more points for the theory as compared to data are calculated which lead to 'nicer' Fouriers
Int_t fStartTimeBin; ///< bin at which the fit starts
Int_t fEndTimeBin; ///< bin at which the fit ends