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Started to implement a few changes in order to increase the calculation efficiency of libTFitPofB

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This commit is contained in:
Bastian M. Wojek 2009-10-25 20:36:02 +00:00
parent 61de7905e6
commit 9a693de0ce
25 changed files with 1999 additions and 586 deletions
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82
src/external/TFitPofB-lib/classes/Makefile.TFitPofB vendored
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@ -1,82 +0,0 @@
#---------------------------------------------------
# get compilation flags from root-config
ROOTCFLAGS = $(shell $(ROOTSYS)/bin/root-config --cflags)
#---------------------------------------------------
OS = LINUX
CXX = g++-4.4.0
CXXFLAGS = -O3 -Wall -fopenmp -Wno-trigraphs -fPIC
MUSRFITINCLUDE = ../../../include
#MUSRFITINCLUDE = /home/l_wojek/rep/analysis/musrfit/src/include
LOCALINCLUDE = ../include
ROOTINCLUDE = $(ROOTSYS)/include
INCLUDES = -I$(LOCALINCLUDE) -I$(MUSRFITINCLUDE) -I$(ROOTINCLUDE)
LD = g++-4.4.0
LDFLAGS = -O3
SOFLAGS = -O3 -shared -fopenmp -lfftw3_threads -lfftw3 -lm -lpthread
# the output from the root-config script:
CXXFLAGS += $(ROOTCFLAGS)
LDFLAGS +=
# some definitions: headers (used to generate *Dict* stuff), sources, objects,...
OBJS =
OBJS += TTrimSPDataHandler.o
OBJS += TBulkVortexFieldCalc.o
OBJS += TBofZCalc.o
OBJS += TPofBCalc.o
OBJS += TPofTCalc.o
OBJS += TFitPofBStartupHandler.o TFitPofBStartupHandlerDict.o
OBJS += TVortex.o TVortexDict.o
OBJS += TLondon1D.o TLondon1DDict.o
OBJS += TSkewedGss.o TSkewedGssDict.o
SHLIB = libTFitPofB.so
# make the shared lib:
#
all: $(SHLIB)
$(SHLIB): $(OBJS)
@echo "---> Building shared library $(SHLIB) ..."
/bin/rm -f $(SHLIB)
$(LD) $(OBJS) $(SOFLAGS) -o $(SHLIB)
@echo "done"
# clean up: remove all object file (and core files)
# semicolon needed to tell make there is no source
# for this target!
#
clean:; @rm -f $(OBJS) *Dict* core*
@echo "---> removing $(OBJS)"
#
$(OBJS): %.o: %.cpp
$(CXX) $(INCLUDES) $(CXXFLAGS) -c $<
# Generate the ROOT CINT dictionary
TVortexDict.cpp: ../include/TVortex.h ../include/TVortexLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p -I$(MUSRFITINCLUDE) $^
TLondon1DDict.cpp: ../include/TLondon1D.h ../include/TLondon1DLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p -I$(MUSRFITINCLUDE) $^
TSkewedGssDict.cpp: ../include/TSkewedGss.h ../include/TSkewedGssLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p -I$(MUSRFITINCLUDE) $^
TFitPofBStartupHandlerDict.cpp: ../include/TFitPofBStartupHandler.h ../include/TFitPofBStartupHandlerLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p $^
install: all
@echo "Installing shared lib: libTFitPofB.so"
ifeq ($(OS),LINUX)
cp -pv $(SHLIB) $(ROOTSYS)/lib
cp -pv $(LOCALINCLUDE)/*.h $(ROOTSYS)/include
endif

187
src/external/TFitPofB-lib/classes/Makefile.libTFitPofB vendored Normal file
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@ -0,0 +1,187 @@
#---------------------------------------------------
# Makefile.libTFitPofB
#
# Author: Bastian M. Wojek
# e-mail: bastian.wojek@psi.ch
#
# $Id$
#
#---------------------------------------------------
#---------------------------------------------------
# get compilation and library flags from root-config
ROOTCFLAGS = $(shell $(ROOTSYS)/bin/root-config --cflags)
ROOTLIBS = $(shell $(ROOTSYS)/bin/root-config --libs)
ROOTGLIBS = $(shell $(ROOTSYS)/bin/root-config --glibs)
#---------------------------------------------------
# depending on the architecture, choose the compiler,
# linker, and the flags to use
#
ARCH = $(shell $(ROOTSYS)/bin/root-config --arch)
ifeq ($(ARCH),linux)
OS = LINUX
endif
ifeq ($(ARCH),linuxx8664gcc)
OS = LINUX
endif
ifeq ($(ARCH),win32gcc)
OS = WIN32GCC
endif
ifeq ($(ARCH),macosx)
OS = DARWIN
endif
# -- Linux
ifeq ($(OS),LINUX)
CXX = g++-4.4.0
CXXFLAGS = -O3 -fopenmp -Wall -Wno-trigraphs -fPIC
PMUSRPATH = ../../../include
MNPATH = $(ROOTSYS)/include
LOCALPATH = ../include
FFTW3PATH = /usr/include
INCLUDES = -I$(PMUSRPATH) -I$(MNPATH) -I$(LOCALPATH) -I$(FFTW3PATH)
LD = g++-4.4.0
LDFLAGS = -O
SOFLAGS = -shared -fopenmp
SHLIB = libTFitPofB.so
endif
# -- Windows/Cygwin
ifeq ($(OS),WIN32GCC)
CXX = g++
CXXFLAGS = -O3 -Wall -Wno-trigraphs -D_DLL
PMUSRPATH = ../../../include
MNPATH = $(ROOTSYS)/include
LOCALPATH = ../include
FFTW3PATH = /usr/include
INCLUDES = -I$(PMUSRPATH) -I$(MNPATH) -I$(LOCALPATH) -I$(FFTW3PATH)
LD = g++
LDFLAGS = -O -Wl,--enable-auto-import -Wl,--enable-runtime-pseudo-reloc
SOFLAGS = -shared -Wl,--export-all-symbols
SHLIB = libTFitPofB.dll
endif
# -- MacOSX/Darwin
ifeq ($(OS),DARWIN)
CXX = g++
CXXFLAGS = -O3 -Wall -Wno-trigraphs -fPIC
PMUSRPATH = ../../../include
MNPATH = $(ROOTSYS)/include
FINKPATH = /sw/include
LOCALPATH = ../include
FFTW3PATH = /sw/include
INCLUDES = -I$(PMUSRPATH) -I$(MNPATH) -I$(LOCALPATH) -I$(FINKPATH) -I$(FFTW3PATH)
LD = g++
LDFLAGS = -O -Xlinker -bind_at_load
SOFLAGS = -dynamiclib -flat_namespace -undefined suppress -Wl,-x
SHLIB = libTFitPofB.dylib
endif
# the output from the root-config script:
CXXFLAGS += $(ROOTCFLAGS)
LDFLAGS +=
# the ROOT libraries (G = graphic)
LIBS = $(ROOTLIBS)
GLIBS = $(ROOTGLIBS)
# PMusr lib
PMUSRLIB = -L$(ROOTSYS)/lib -lPMusr
# FFTW lib
FFTW3LIB = -lfftw3_threads -lfftw3 -lm -lpthread
ifeq ($(OS),WIN32GCC)
# PMusr lib
PMUSRLIB = -L$(ROOTSYS)/lib -lPMusr -lMathMore
endif
ifeq ($(OS),DARWIN)
# FFTW lib
FFTW3LIB = -L/sw/lib -lfftw3_threads -lfftw3 -lm -lpthread
# PMusr lib
PMUSRLIB = -L$(ROOTSYS)/lib -lPMusr -lMathMore
endif
# some definitions: headers (used to generate *Dict* stuff), sources, objects,...
OBJS =
OBJS += TTrimSPDataHandler.o
OBJS += TBulkVortexFieldCalc.o
OBJS += TBofZCalc.o
OBJS += TPofBCalc.o
OBJS += TPofTCalc.o
OBJS += TFitPofBStartupHandler.o TFitPofBStartupHandlerDict.o
OBJS += TVortex.o TVortexDict.o
OBJS += TLondon1D.o TLondon1DDict.o
OBJS += TSkewedGss.o TSkewedGssDict.o
INST_HEADER =
INST_HEADER += ../include/TBofZCalc.h
INST_HEADER += ../include/TBulkVortexFieldCalc.h
INST_HEADER += ../include/TFitPofBStartupHandler.h
INST_HEADER += ../include/TLondon1D.h
INST_HEADER += ../include/TPofBCalc.h
INST_HEADER += ../include/TPofTCalc.h
INST_HEADER += ../include/TSkewedGss.h
INST_HEADER += ../include/TTrimSPDataHandler.h
INST_HEADER += ../include/TVortex.h
# make the shared libs:
all: $(SHLIB)
$(SHLIB): $(EXTOBJS) $(OBJS)
@echo "---> Building shared library $(SHLIB) ..."
/bin/rm -f $(SHLIB)
$(LD) $(SOFLAGS) $(LDFLAGS) -o $(SHLIB) $(OBJS) $(LIBS) $(PMUSRLIB) $(FFTW3LIB)
@echo "done"
# clean up: remove all object file (and core files)
# semicolon needed to tell make there is no source
# for this target!
#
clean:; @rm -f $(OBJS) $(EXTOBJS) $(SHLIB) *Dict* core* *~
@echo "---> removing $(OBJS) $(SHLIB)"
$(OBJS): %.o: %.cpp
$(CXX) $(INCLUDES) $(CXXFLAGS) -c $<
# Generate the ROOT CINT dictionary
TVortexDict.cpp: ../include/TVortex.h ../include/TVortexLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p -I$(PMUSRPATH) $^
TLondon1DDict.cpp: ../include/TLondon1D.h ../include/TLondon1DLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p -I$(PMUSRPATH) $^
TSkewedGssDict.cpp: ../include/TSkewedGss.h ../include/TSkewedGssLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p -I$(PMUSRPATH) $^
TFitPofBStartupHandlerDict.cpp: ../include/TFitPofBStartupHandler.h ../include/TFitPofBStartupHandlerLinkDef.h
@echo "Generating dictionary $@..."
rootcint -f $@ -c -p $^
install: all
@echo "Installing shared lib: $(SHLIB)"
ifeq ($(OS),LINUX)
cp -pv $(SHLIB) $(ROOTSYS)/lib
cp -pv $(INST_HEADER) $(ROOTSYS)/include
endif
ifeq ($(OS),WIN32GCC)
cp -pv $(SHLIB) $(ROOTSYS)/bin
ln -sf $(ROOTSYS)/bin/$(SHLIB) $(ROOTSYS)/lib/$(SHLIB)
cp -pv $(INST_HEADER) $(ROOTSYS)/include
endif
ifeq ($(OS),DARWIN)
cp -pv $(SHLIB) $(ROOTSYS)/lib
cp -pv $(INST_HEADER) $(ROOTSYS)/include
endif
cleaninstall: clean install

20
src/external/TFitPofB-lib/classes/TBofZCalc.cpp vendored
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@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include "TBofZCalc.h" #include "TBofZCalc.h"
#include <omp.h> #include <omp.h>
#include <cmath> #include <cmath>

327
src/external/TFitPofB-lib/classes/TBulkVortexFieldCalc.cpp vendored
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@ -9,16 +9,40 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include "TBulkVortexFieldCalc.h" #include "TBulkVortexFieldCalc.h"
#include <cstdlib>
#include <cmath> #include <cmath>
#include <omp.h> #include <omp.h>
#include <iostream>
using namespace std;
#define PI 3.14159265358979323846 #define PI 3.14159265358979323846
#define TWOPI 6.28318530717958647692 #define TWOPI 6.28318530717958647692
const double fluxQuantum(2.067833667e7); // 10e14 times CGS units %% in CGS units should be 10^-7 const double fluxQuantum(2.067833667e7); // 10e14 times CGS units %% in CGS units should be 10^-7
// in this case this is Gauss per square nm // in this case this is Gauss per square nm
const double sqrt3(sqrt(3.0));
double getXi(const double hc2) { // get xi given Hc2 in Gauss double getXi(const double hc2) { // get xi given Hc2 in Gauss
if (hc2) if (hc2)
@ -34,68 +58,295 @@ double getHc2(const double xi) { // get Hc2 given xi in nm
return 0.0; return 0.0;
} }
TBulkTriVortexLondonFieldCalc::TBulkTriVortexLondonFieldCalc(const vector<double>& param, const unsigned int steps, const unsigned int Ncomp) TBulkVortexFieldCalc::~TBulkVortexFieldCalc() {
: fNFourierComp(Ncomp) { // if a wisdom file is used export the wisdom so it has not to be checked for the FFT-plan next time
if (fUseWisdom) {
FILE *wordsOfWisdomW;
wordsOfWisdomW = fopen(fWisdom.c_str(), "w");
if (wordsOfWisdomW == NULL) {
cout << "TBulkVortexFieldCalc::~TBulkVortexFieldCalc(): Could not open file ... No wisdom is exported..." << endl;
} else {
fftw_export_wisdom_to_file(wordsOfWisdomW);
fclose(wordsOfWisdomW);
}
}
// clean up
fftw_destroy_plan(fFFTplan);
delete[] fFFTin; fFFTin = 0;
delete[] fFFTout; fFFTout = 0;
//fftw_cleanup();
//fftw_cleanup_threads();
}
TBulkTriVortexLondonFieldCalc::TBulkTriVortexLondonFieldCalc(const string& wisdom, const unsigned int steps) {
fWisdom = wisdom;
fSteps = steps; fSteps = steps;
fParam = param; fParam.resize(3);
fB.clear(); fGridExists = false;
} if (fSteps%2)
fSteps++;
double TBulkTriVortexLondonFieldCalc::GetBatPoint(double relX, double relY) const { int init_threads(fftw_init_threads());
if (init_threads)
fftw_plan_with_nthreads(2);
double latConstTr(sqrt(fluxQuantum/fParam[2])*sqrt(sqrt(4.0/3.0))); fFFTin = new fftw_complex[(fSteps/2 + 1) * fSteps];
double Hc2(getHc2(fParam[1])); fFFTout = new double[fSteps*fSteps];
double xCoord(latConstTr*relX); // in nanometers // cout << "Check for the FFT plan..." << endl;
double yCoord(latConstTr*relY);
if ((fParam[2] < Hc2) && (fParam[0] > fParam[1]/sqrt(2.0))) { // Load wisdom from file if it exists and should be used
double KLatTr(4.0*PI/(latConstTr*sqrt(3.0)));
double fourierSum(0.0); fUseWisdom = true;
for(int mm = -fNFourierComp; mm <= static_cast<int>(fNFourierComp); mm++) { int wisdomLoaded(0);
for(int nn = -fNFourierComp; nn <= static_cast<int>(fNFourierComp); nn++) {
fourierSum += cos(KLatTr*(xCoord*mm*(0.5*sqrt(3.0)) + yCoord*mm*0.5 + yCoord*nn))*exp(-(0.5*fParam[1]*fParam[1]*KLatTr*KLatTr)* \ FILE *wordsOfWisdomR;
(0.75*mm*mm + (nn + 0.5*mm)*(nn + 0.5*mm)))/(1.0+(fParam[0]*KLatTr*fParam[0]*KLatTr)*(0.75*mm*mm + (nn + 0.5*mm)*(nn + 0.5*mm))); wordsOfWisdomR = fopen(fWisdom.c_str(), "r");
if (wordsOfWisdomR == NULL) {
fUseWisdom = false;
} else {
wisdomLoaded = fftw_import_wisdom_from_file(wordsOfWisdomR);
fclose(wordsOfWisdomR);
} }
if (!wisdomLoaded) {
fUseWisdom = false;
} }
return fParam[2]*fourierSum;
} // create the FFT plan
if (fUseWisdom)
fFFTplan = fftw_plan_dft_c2r_2d(fSteps, fSteps, fFFTin, fFFTout, FFTW_EXHAUSTIVE);
else else
return fParam[2]; fFFTplan = fftw_plan_dft_c2r_2d(fSteps, fSteps, fFFTin, fFFTout, FFTW_ESTIMATE);
} }
// double TBulkTriVortexLondonFieldCalc::GetBatPoint(double relX, double relY) const {
//
// double field(fParam[0]), lambda(fParam[1]), xi(fParam[2]);
// double xisq_2(0.5*xi*xi), lambdasq(lambda*lambda);
//
// double latConstTr(sqrt(fluxQuantum/field)*sqrt(sqrt(4.0/3.0)));
// double Hc2(getHc2(xi));
//
// double xCoord(latConstTr*relX); // in nanometers
// double yCoord(latConstTr*relY);
//
// if ((field < Hc2) && (lambda > xi/sqrt(2.0))) {
// double KLatTr(4.0*PI/(latConstTr*sqrt3));
// double fourierSum(1.0), fourierAdd(0.0), expo;
//
// // k = 0, l = 0 gives 1.0, already in fourierSum
//
// // l = 0, only integer k
// for (double k (1.0); k < static_cast<double>(fNFourierComp); k+=1.0){
// expo = 3.0*pow(KLatTr*k, 2.0);
// fourierAdd += exp(-xisq_2*expo)/(lambdasq*expo + 1.0)*cos(sqrt3*KLatTr*k*xCoord);
// }
//
// fourierSum += 2.0*fourierAdd;
// fourierAdd = 0.0;
//
// // k = 0, only integer l
// for (double l (1.0); l < static_cast<double>(fNFourierComp); l+=1.0){
// expo = pow(KLatTr*l, 2.0);
// fourierAdd += exp(-xisq_2*expo)/(lambdasq*expo + 1.0)*cos(KLatTr*l*yCoord);
// }
//
// fourierSum += 2.0*fourierAdd;
// fourierAdd = 0.0;
//
// // k != 0, l != 0 both integers
// for (double k (1.0); k < static_cast<double>(fNFourierComp); k+=1.0){
// for (double l (1.0); l < static_cast<double>(fNFourierComp); l+=1.0){
// expo = KLatTr*KLatTr*(3.0*k*k + l*l);
// fourierAdd += exp(-xisq_2*expo)/(lambdasq*expo + 1.0)*cos(sqrt3*KLatTr*k*xCoord)*cos(KLatTr*l*yCoord);
// }
// }
//
// fourierSum += 4.0*fourierAdd;
// fourierAdd = 0.0;
//
// // k != 0, l != 0 both half-integral numbers
// for (double k (0.5); k < static_cast<double>(fNFourierComp); k+=1.0){
// for (double l (0.5); l < static_cast<double>(fNFourierComp); l+=1.0){
// expo = KLatTr*KLatTr*(3.0*k*k + l*l);
// fourierAdd += exp(-xisq_2*expo)/(lambdasq*expo + 1.0)*cos(sqrt3*KLatTr*k*xCoord)*cos(KLatTr*l*yCoord);
// }
// }
//
// fourierSum += 4.0*fourierAdd;
//
// // for(int mm = -fNFourierComp; mm <= static_cast<int>(fNFourierComp); mm++) {
// // for(int nn = -fNFourierComp; nn <= static_cast<int>(fNFourierComp); nn++) {
// // fourierSum += cos(KLatTr*(xCoord*mm*(0.5*sqrt(3.0)) + yCoord*mm*0.5 + yCoord*nn))*exp(-(0.5*fParam[1]*fParam[1]*KLatTr*KLatTr)*
// // (0.75*mm*mm + (nn + 0.5*mm)*(nn + 0.5*mm)))/(1.0+(fParam[0]*KLatTr*fParam[0]*KLatTr)*(0.75*mm*mm + (nn + 0.5*mm)*(nn + 0.5*mm)));
// // }
// // }
// // cout << " " << fourierSum << ", ";
// return field*fourierSum;
// }
// else
// return field;
//
// }
void TBulkTriVortexLondonFieldCalc::CalculateGrid() const { void TBulkTriVortexLondonFieldCalc::CalculateGrid() const {
// SetParameters - method has to be called from the user before the calculation!!
double field(abs(fParam[0])), lambda(abs(fParam[1])), xi(abs(fParam[2]));
double Hc2(getHc2(xi));
double bb(cos(PI/6.0)*0.5); double latConstTr(sqrt(fluxQuantum/field*sqrt(4.0/3.0)));
double yStep(bb/static_cast<double>(fSteps)); double xisq_2_scaled(2.0/3.0*pow(xi*PI/latConstTr,2.0)), lambdasq_scaled(4.0/3.0*pow(lambda*PI/latConstTr,2.0));
double xStep(0.5/static_cast<double>(fSteps));
fB.resize(fSteps); int NFFT(fSteps);
for (unsigned int i(0); i < fSteps; i++) int NFFT_2(fSteps/2);
fB[i].resize(fSteps); int NFFTsq(fSteps*fSteps);
for(unsigned int i(0); i < fSteps; i++) { // fill the field Fourier components in the matrix
int j;
#pragma omp parallel for default(shared) private(j) schedule(dynamic) int m;
for(j=0; j < static_cast<int>(fSteps); j++) {
fB[i][j] = GetBatPoint(static_cast<double>(i)*xStep, static_cast<double>(j)*yStep); // ... but first check that the field is not larger than Hc2 and that we are dealing with a type II SC
if ((field >= Hc2) || (lambda < xi/sqrt(2.0))) {
#pragma omp parallel for default(shared) private(m) schedule(dynamic)
for (m = 0; m < NFFTsq; m++) {
fFFTout[m] = field;
} }
// end pragma omp parallel // Set the flag which shows that the calculation has been done
fGridExists = true;
return;
} }
// ... now fill in the Fourier components if everything was okay above
double Gsq;
int k, l, lNFFT_2;
// omp causes problems with the fftw_complex*... comment it out for the moment
//#pragma omp parallel default(shared) private(l,lNFFT_2,k,Gsq)
{
// #pragma omp sections nowait
{
// #pragma omp section
// #pragma omp parallel for default(shared) private(l,lNFFT_2,k) schedule(dynamic)
for (l = 0; l < NFFT_2; l += 2) {
lNFFT_2 = l*(NFFT_2 + 1);
for (k = 0; k < NFFT_2; k += 2) {
Gsq = 3.0*static_cast<double>(k*k) + static_cast<double>(l*l);
fFFTin[lNFFT_2 + k][0] = exp(-xisq_2_scaled*Gsq)/(1.0+lambdasq_scaled*Gsq);
fFFTin[lNFFT_2 + k][1] = 0.0;
fFFTin[lNFFT_2 + k + 1][0] = 0.0;
fFFTin[lNFFT_2 + k + 1][1] = 0.0;
}
k = NFFT_2;
Gsq = 3.0*static_cast<double>(k*k) + static_cast<double>(l*l);
fFFTin[lNFFT_2 + k][0] = exp(-xisq_2_scaled*Gsq)/(1.0+lambdasq_scaled*Gsq);
fFFTin[lNFFT_2 + k][1] = 0.0;
}
// #pragma omp section
// #pragma omp parallel for default(shared) private(l,lNFFT_2,k) schedule(dynamic)
for (l = NFFT_2; l < NFFT; l += 2) {
lNFFT_2 = l*(NFFT_2 + 1);
for (k = 0; k < NFFT_2; k += 2) {
Gsq = 3.0*static_cast<double>(k*k) + static_cast<double>((NFFT-l)*(NFFT-l));
fFFTin[lNFFT_2 + k][0] = exp(-xisq_2_scaled*Gsq)/(1.0+lambdasq_scaled*Gsq);
fFFTin[lNFFT_2 + k][1] = 0.0;
fFFTin[lNFFT_2 + k + 1][0] = 0.0;
fFFTin[lNFFT_2 + k + 1][1] = 0.0;
}
k = NFFT_2;
Gsq = 3.0*static_cast<double>(k*k) + static_cast<double>((NFFT-l)*(NFFT-l));
fFFTin[lNFFT_2 + k][0] = exp(-xisq_2_scaled*Gsq)/(1.0+lambdasq_scaled*Gsq);
fFFTin[lNFFT_2 + k][1] = 0.0;
}
// intermediate rows
// #pragma omp section
// #pragma omp parallel for default(shared) private(l,lNFFT_2,k) schedule(dynamic)
for (l = 1; l < NFFT_2; l += 2) {
lNFFT_2 = l*(NFFT_2 + 1);
for (k = 0; k < NFFT_2; k += 2) {
Gsq = 3.0*static_cast<double>((k + 1)*(k + 1)) + static_cast<double>(l*l);
fFFTin[lNFFT_2 + k][0] = 0.0;
fFFTin[lNFFT_2 + k][1] = 0.0;
fFFTin[lNFFT_2 + k + 1][0] = exp(-xisq_2_scaled*Gsq)/(1.0+lambdasq_scaled*Gsq);
fFFTin[lNFFT_2 + k + 1][1] = 0.0;
}
k = NFFT_2;
fFFTin[lNFFT_2 + k][0] = 0.0;
fFFTin[lNFFT_2 + k][1] = 0.0;
}
// #pragma omp section
// #pragma omp parallel for default(shared) private(l,lNFFT_2,k) schedule(dynamic)
for (l = NFFT_2 + 1; l < NFFT; l += 2) {
lNFFT_2 = l*(NFFT_2 + 1);
for (k = 0; k < NFFT_2; k += 2) {
Gsq = 3.0*static_cast<double>((k+1)*(k+1)) + static_cast<double>((NFFT-l)*(NFFT-l));
fFFTin[lNFFT_2 + k][0] = 0.0;
fFFTin[lNFFT_2 + k][1] = 0.0;
fFFTin[lNFFT_2 + k + 1][0] = exp(-xisq_2_scaled*Gsq)/(1.0+lambdasq_scaled*Gsq);
fFFTin[lNFFT_2 + k + 1][1] = 0.0;
}
k = NFFT_2;
fFFTin[lNFFT_2 + k][0] = 0.0;
fFFTin[lNFFT_2 + k][1] = 0.0;
}
} /* end of sections */
} /* end of parallel section */
// Do the Fourier transform to get B(x,y)
fftw_execute(fFFTplan);
// Multiply by the applied field
#pragma omp parallel for default(shared) private(l) schedule(dynamic)
for (l = 0; l < NFFTsq; l++) {
fFFTout[l] *= field;
}
// Set the flag which shows that the calculation has been done
fGridExists = true;
return; return;
} }
double TBulkTriVortexLondonFieldCalc::GetBmin() const { double TBulkTriVortexLondonFieldCalc::GetBmin() const {
return GetBatPoint(0.5, 0.5*tan(PI/6.0)); if (fGridExists) {
double min(fFFTout[0]);
unsigned int minindex(0), counter(0);
for (unsigned int j(0); j < fSteps * fSteps / 2; j++) {
if (fFFTout[j] <= 0.0) {
return 0.0;
}
if (fFFTout[j] < min) {
min = fFFTout[j];
minindex = j;
}
counter++;
if (counter == fSteps/2) { // check only the first quadrant of B(x,y)
counter = 0;
j += fSteps/2;
}
}
return fFFTout[minindex];
} else {
CalculateGrid();
return GetBmin();
}
} }
double TBulkTriVortexLondonFieldCalc::GetBmax() const { double TBulkTriVortexLondonFieldCalc::GetBmax() const {
if (!fB.empty()) if (fGridExists)
return fB[0][0]; return fFFTout[0];
else else {
return GetBatPoint(0.0, 0.0); CalculateGrid();
return GetBmax();
}
} }

4
src/external/TFitPofB-lib/classes/TFitPofBStartupHandler.cpp vendored
View File

@ -1,6 +1,6 @@
/*************************************************************************** /***************************************************************************
TFitPofBStartupHandler.h TFitPofBStartupHandler.cpp
Author: Bastian M. Wojek Author: Bastian M. Wojek
e-mail: bastian.wojek@psi.ch e-mail: bastian.wojek@psi.ch
@ -14,7 +14,7 @@
***************************************************************************/ ***************************************************************************/
/*************************************************************************** /***************************************************************************
* Copyright (C) 2007 by Andreas Suter, Bastian M. Wojek * * Copyright (C) 2007-2008 by Andreas Suter, Bastian M. Wojek *
* * * *
* * * *
* This program is free software; you can redistribute it and/or modify * * This program is free software; you can redistribute it and/or modify *

167
src/external/TFitPofB-lib/classes/TLondon1D.cpp vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include "TLondon1D.h" #include "TLondon1D.h"
#include <iostream> #include <iostream>
#include <cassert> #include <cassert>
@ -43,6 +63,8 @@ TLondon1DHS::~TLondon1DHS() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -54,6 +76,8 @@ TLondon1D1L::~TLondon1D1L() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -65,6 +89,8 @@ TLondon1D2L::~TLondon1D2L() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -76,6 +102,8 @@ TProximity1D1LHS::~TProximity1D1LHS() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -87,6 +115,8 @@ TProximity1D1LHSGss::~TProximity1D1LHSGss() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -98,6 +128,8 @@ TLondon1D3L::~TLondon1D3L() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -109,6 +141,8 @@ TLondon1D3LS::~TLondon1D3LS() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -131,6 +165,8 @@ TLondon1D3LSub::~TLondon1D3LSub() {
fParForPofT.clear(); fParForPofT.clear();
delete fImpProfile; delete fImpProfile;
fImpProfile = 0; fImpProfile = 0;
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -159,7 +195,7 @@ TLondon1DHS::TLondon1DHS() : fCalcNeeded(true), fFirstCall(true) {
string rge_path(startupHandler->GetDataPath()); string rge_path(startupHandler->GetDataPath());
vector<string> energy_vec(startupHandler->GetEnergyList()); vector<string> energy_vec(startupHandler->GetEnergyList());
fParForPofT.push_back(0.0); fParForPofT.push_back(0.0); // phase
fParForPofT.push_back(startupHandler->GetDeltat()); fParForPofT.push_back(startupHandler->GetDeltat());
fParForPofT.push_back(startupHandler->GetDeltaB()); fParForPofT.push_back(startupHandler->GetDeltaB());
@ -173,12 +209,15 @@ TLondon1DHS::TLondon1DHS() : fCalcNeeded(true), fFirstCall(true) {
TTrimSPData *x = new TTrimSPData(rge_path, energy_vec); TTrimSPData *x = new TTrimSPData(rge_path, energy_vec);
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
delete x;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
delete y;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
@ -212,13 +251,8 @@ double TLondon1DHS::operator()(double t, const vector<double> &par) const {
if(fFirstCall){ if(fFirstCall){
fPar = par; fPar = par;
// for (unsigned int i(0); i<fPar.size(); i++){
// cout << "fPar[" << i << "] = " << fPar[i] << endl;
// }
for (unsigned int i(2); i<fPar.size(); i++){ for (unsigned int i(2); i<fPar.size(); i++){
fParForBofZ.push_back(fPar[i]); fParForBofZ.push_back(fPar[i]);
// cout << "fParForBofZ[" << i-2 << "] = " << fParForBofZ[i-2] << endl;
} }
fFirstCall = false; fFirstCall = false;
dead_layer_changed = true; dead_layer_changed = true;
@ -280,8 +314,9 @@ double TLondon1DHS::operator()(double t, const vector<double> &par) const {
} }
TLondon1D_HS BofZ(fParForBofZ); TLondon1D_HS BofZ(fParForBofZ);
TPofBCalc PofB(BofZ, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofT->DoFFT(PofB); fPofB->Calculate(&BofZ, fImpProfile, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;
@ -332,12 +367,14 @@ TLondon1D1L::TLondon1D1L() : fCalcNeeded(true), fFirstCall(true), fCallCounter(0
TTrimSPData *x = new TTrimSPData(rge_path, energy_vec); TTrimSPData *x = new TTrimSPData(rge_path, energy_vec);
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
delete x;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
delete y;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
@ -420,8 +457,9 @@ double TLondon1D1L::operator()(double t, const vector<double> &par) const {
fParForPofB[2] = par[1]; // energy fParForPofB[2] = par[1]; // energy
TLondon1D_1L BofZ1(fParForBofZ); TLondon1D_1L BofZ1(fParForBofZ);
TPofBCalc PofB1(BofZ1, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofT->DoFFT(PofB1); fPofB->Calculate(&BofZ1, fImpProfile, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;
@ -480,12 +518,15 @@ TLondon1D2L::TLondon1D2L() : fCalcNeeded(true), fFirstCall(true), fLastTwoChange
TTrimSPData *x = new TTrimSPData(rge_path, energy_vec); TTrimSPData *x = new TTrimSPData(rge_path, energy_vec);
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
delete x;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
delete y;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
@ -577,8 +618,10 @@ double TLondon1D2L::operator()(double t, const vector<double> &par) const {
} }
TLondon1D_2L BofZ2(fParForBofZ); TLondon1D_2L BofZ2(fParForBofZ);
TPofBCalc PofB2(BofZ2, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofT->DoFFT(PofB2); fPofB->Calculate(&BofZ2, fImpProfile, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;
@ -633,10 +676,14 @@ TProximity1D1LHS::TProximity1D1LHS() : fCalcNeeded(true), fFirstCall(true) {
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
delete saxParser; delete saxParser;
@ -738,8 +785,10 @@ double TProximity1D1LHS::operator()(double t, const vector<double> &par) const {
} }
TProximity1D_1LHS BofZ(fParForBofZ); TProximity1D_1LHS BofZ(fParForBofZ);
TPofBCalc PofB(BofZ, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofT->DoFFT(PofB); fPofB->Calculate(&BofZ, fImpProfile, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;
@ -791,10 +840,14 @@ TProximity1D1LHSGss::TProximity1D1LHSGss() : fCalcNeeded(true), fFirstCall(true)
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
delete saxParser; delete saxParser;
@ -872,8 +925,9 @@ double TProximity1D1LHSGss::operator()(double t, const vector<double> &par) cons
fParForPofB[2] = par[1]; // energy fParForPofB[2] = par[1]; // energy
TProximity1D_1LHSGss BofZ(fParForBofZ); TProximity1D_1LHSGss BofZ(fParForBofZ);
TPofBCalc PofB(BofZ, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofT->DoFFT(PofB); fPofB->Calculate(&BofZ, fImpProfile, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;
@ -922,12 +976,15 @@ TLondon1D3L::TLondon1D3L() : fCalcNeeded(true), fFirstCall(true), fLastThreeChan
TTrimSPData *x = new TTrimSPData(rge_path, energy_vec); TTrimSPData *x = new TTrimSPData(rge_path, energy_vec);
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
delete x;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
delete y;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
@ -1034,8 +1091,10 @@ double TLondon1D3L::operator()(double t, const vector<double> &par) const {
} }
TLondon1D_3L BofZ3(fParForBofZ); TLondon1D_3L BofZ3(fParForBofZ);
TPofBCalc PofB3(BofZ3, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofT->DoFFT(PofB3); fPofB->Calculate(&BofZ3, fImpProfile, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;
@ -1085,12 +1144,14 @@ TLondon1D3LS::TLondon1D3LS() : fCalcNeeded(true), fFirstCall(true), fLastThreeCh
TTrimSPData *x = new TTrimSPData(rge_path, energy_vec); TTrimSPData *x = new TTrimSPData(rge_path, energy_vec);
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
delete x;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
delete y;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
@ -1183,8 +1244,9 @@ double TLondon1D3LS::operator()(double t, const vector<double> &par) const {
} }
TLondon1D_3LS BofZ3S(fParForBofZ); TLondon1D_3LS BofZ3S(fParForBofZ);
TPofBCalc PofB3S(BofZ3S, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofT->DoFFT(PofB3S); fPofB->Calculate(&BofZ3S, fImpProfile, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;
@ -1402,12 +1464,14 @@ TLondon1D3LSub::TLondon1D3LSub() : fCalcNeeded(true), fFirstCall(true), fWeights
TTrimSPData *x = new TTrimSPData(rge_path, energy_vec); TTrimSPData *x = new TTrimSPData(rge_path, energy_vec);
fImpProfile = x; fImpProfile = x;
x = 0; x = 0;
delete x;
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofT = y; fPofB = y;
y = 0; y = 0;
delete y;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
@ -1519,13 +1583,14 @@ double TLondon1D3LSub::operator()(double t, const vector<double> &par) const {
} }
TLondon1D_3L BofZ3(fParForBofZ); TLondon1D_3L BofZ3(fParForBofZ);
TPofBCalc PofB3(BofZ3, *fImpProfile, fParForPofB); fPofB->UnsetPBExists();
fPofB->Calculate(&BofZ3, fImpProfile, fParForPofB);
// Add background contribution from the substrate // Add background contribution from the substrate
PofB3.AddBackground(par[2], par[14], fImpProfile->LayerFraction(par[1], 4, interfaces)); fPofB->AddBackground(par[2], par[14], fImpProfile->LayerFraction(par[1], 4, interfaces));
// FourierTransform of P(B) // FourierTransform of P(B)
fPofT->DoFFT(PofB3); fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;

436
src/external/TFitPofB-lib/classes/TPofBCalc.cpp vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include "TPofTCalc.h" #include "TPofTCalc.h"
#include <cmath> #include <cmath>
#include <cstdlib> #include <cstdlib>
@ -23,13 +43,39 @@
#include <ctime> #include <ctime>
/-------------------------------------------------------*/ /-------------------------------------------------------*/
TPofBCalc::TPofBCalc(const vector<double> &para) : fBmin(0.0), fBmax(0.0), fDT(para[0]), fDB(para[1]), fPBExists(false) {
fPBSize = static_cast<int>(1.0/(gBar*fDT*fDB));
if (fPBSize % 2) {
fPBSize += 1;
} else {
fPBSize += 2;
}
fB = new double[fPBSize];
fPB = new double[fPBSize];
int i;
for (i = 0; i < static_cast<int>(fPBSize); i++) {
fB[i] = static_cast<double>(i)*fDB;
fPB[i] = 0.0;
}
}
// Do not actually calculate P(B) but take it from a B and a P(B) vector of the same size // Do not actually calculate P(B) but take it from a B and a P(B) vector of the same size
TPofBCalc::TPofBCalc( const vector<double>& b, const vector<double>& pb, double dt) { TPofBCalc::TPofBCalc(const vector<double>& b, const vector<double>& pb, double dt) {
assert(b.size() == pb.size() && b.size() >= 2); assert(b.size() == pb.size() && b.size() >= 2);
fPBSize = pb.size();
fB = b; fB = new double[fPBSize];
fPB = pb; fPB = new double[fPBSize];
for (unsigned int i(0); i < fPBSize; i++) {
fB[i] = b[i];
fPB[i] = pb[i];
}
vector<double>::const_iterator iter, iterB; vector<double>::const_iterator iter, iterB;
iterB = b.begin(); iterB = b.begin();
@ -37,7 +83,7 @@ TPofBCalc::TPofBCalc( const vector<double>& b, const vector<double>& pb, double
for(iter = pb.begin(); iter != pb.end(); iter++){ for(iter = pb.begin(); iter != pb.end(); iter++){
if(*iter != 0.0) { if(*iter != 0.0) {
fBmin = *iterB; fBmin = *iterB;
cout << fBmin << endl; // cout << fBmin << endl;
break; break;
} }
iterB++; iterB++;
@ -46,7 +92,7 @@ TPofBCalc::TPofBCalc( const vector<double>& b, const vector<double>& pb, double
for( ; iter != b.end(); iter++){ for( ; iter != b.end(); iter++){
if(*iter == 0.0) { if(*iter == 0.0) {
fBmax = *(iterB-1); fBmax = *(iterB-1);
cout << fBmax << endl; // cout << fBmax << endl;
break; break;
} }
iterB++; iterB++;
@ -55,129 +101,92 @@ TPofBCalc::TPofBCalc( const vector<double>& b, const vector<double>& pb, double
fDT = dt; // needed if a convolution should be done fDT = dt; // needed if a convolution should be done
fDB = b[1]-b[0]; fDB = b[1]-b[0];
cout << fDB << endl; // cout << fDB << endl;
fPBExists = true;
} }
void TPofBCalc::UnsetPBExists() {
int i;
#pragma omp parallel for default(shared) private(i) schedule(dynamic)
for (i = 0; i < static_cast<int>(fPBSize); i++) {
fPB[i] = 0.0;
}
fPBExists = false;
}
TPofBCalc::TPofBCalc( const string &type, const vector<double> &para ) : fDT(para[0]), fDB(para[1]) { void TPofBCalc::Calculate(const string &type, const vector<double> &para) {
if (type == "skg"){ // skewed Gaussian if (type == "skg"){ // skewed Gaussian
fBmin = 0.0; fBmin = 0.0;
fBmax = para[2]/gBar+10.0*fabs(para[4])/(2.0*pi*gBar); fBmax = para[2]/gBar+10.0*fabs(para[4])/(2.0*pi*gBar);
double BB; int a3(static_cast<int>(floor(fBmax/fDB)));
int a4(static_cast<int>(ceil(fBmax/fDB)));
unsigned int BmaxIndex((a3 < a4) ? a4 : (a4 + 1));
unsigned int B0Index(static_cast<int>(ceil(para[2]/(gBar*fDB))));
double expominus(para[3]*para[3]/(2.0*pi*pi*gBar*gBar)); double expominus(para[3]*para[3]/(2.0*pi*pi*gBar*gBar));
double expoplus(para[4]*para[4]/(2.0*pi*pi*gBar*gBar)); double expoplus(para[4]*para[4]/(2.0*pi*pi*gBar*gBar));
double B0(para[2]/gBar); double B0(para[2]/(gBar));
double BmaxFFT(1.0/gBar/fDT);
for ( BB = 0.0 ; BB < B0 ; BB += fDB ) { for (unsigned int i(0); i < B0Index; i++) {
fB.push_back(BB); fPB[i] = exp(-(fB[i]-B0)*(fB[i]-B0)/expominus);
fPB.push_back(exp(-(BB-B0)*(BB-B0)/expominus));
} }
for ( ; BB < fBmax ; BB += fDB ) { for (unsigned int i(B0Index); i <= BmaxIndex; i++) {
fB.push_back(BB); fPB[i] = exp(-(fB[i]-B0)*(fB[i]-B0)/expoplus);
fPB.push_back(exp(-(BB-B0)*(BB-B0)/expoplus));
}
unsigned int lastZerosStart(fB.size());
for ( ; BB <= BmaxFFT ; BB += fDB ) {
fB.push_back(BB);
fPB.push_back(0.0);
}
// make sure that we have an even number of elements in p(B) for FFT, so we do not have to care later
if (fB.size() % 2) {
fB.push_back(BB);
fPB.push_back(0.0);
} }
// normalize p(B) // normalize p(B)
double pBsum = 0.0; double pBsum = 0.0;
for (unsigned int i(0); i<lastZerosStart; i++) for (unsigned int i(0); i <= BmaxIndex; i++)
pBsum += fPB[i]; pBsum += fPB[i];
pBsum *= fDB; pBsum *= fDB;
for (unsigned int i(0); i<lastZerosStart; i++) for (unsigned int i(0); i <= BmaxIndex; i++)
fPB[i] /= pBsum; fPB[i] /= pBsum;
} else { // fill the vectors with zeros
fBmin = 0.0;
fBmax = 1.0/gBar/fDT;
double BB;
for (BB=0.0 ; BB < fBmax ; BB += fDB ) {
fB.push_back(BB);
fPB.push_back(0.0);
} }
// make sure that we have an even number of elements in p(B) for FFT, so we do not have to care later fPBExists = true;
return;
if (fB.size() % 2) {
fB.push_back(BB);
fPB.push_back(0.0);
}
}
} }
//----------- //-----------
// Constructor that does the P(B) calculation for given analytical inverse of B(z) and its derivative and n(z) // Calculate-method that does the P(B) calculation for given analytical inverse of B(z) and its derivative and n(z)
// Parameters: dt[us], dB[G], Energy[keV], Bbg[G], width[us^{-1}], weight[1] // Parameters: dt[us], dB[G], Energy[keV], Bbg[G], width[us^{-1}], weight[1]
//----------- //-----------
TPofBCalc::TPofBCalc( const TBofZCalcInverse &BofZ, const TTrimSPData &dataTrimSP, const vector<double> &para ) : fDT(para[0]), fDB(para[1]) void TPofBCalc::Calculate(const TBofZCalcInverse *BofZ, const TTrimSPData *dataTrimSP, const vector<double> &para) {
{
fBmin = BofZ.GetBmin(); if(fPBExists)
fBmax = BofZ.GetBmax(); return;
double BB; fBmin = BofZ->GetBmin();
fBmax = BofZ->GetBmax();
// fill not used Bs before Bmin with 0.0 int a1(static_cast<int>(floor(fBmin/fDB)));
int a2(static_cast<int>(ceil(fBmin/fDB)));
int a3(static_cast<int>(floor(fBmax/fDB)));
int a4(static_cast<int>(ceil(fBmax/fDB)));
for (BB = 0.0; BB < fBmin; BB += fDB) unsigned int firstZerosEnd ((a1 < a2) ? a1 : ((a1 > 0) ? (a1 - 1) : 0));
fB.push_back(BB); unsigned int lastZerosStart ((a3 < a4) ? a4 : (a4 + 1));
fPB.resize(fB.size(),0.0);
unsigned int firstZerosEnd(fB.size()); unsigned int i;
// calculate p(B) from the inverse of B(z) // calculate p(B) from the inverse of B(z)
for ( ; BB <= fBmax ; BB += fDB) { for (i = firstZerosEnd; i <= lastZerosStart; i++) {
fB.push_back(BB);
fPB.push_back(0.0);
vector< pair<double, double> > inv; vector< pair<double, double> > inv;
inv = BofZ.GetInverseAndDerivative(BB); inv = BofZ->GetInverseAndDerivative(fB[i]);
for (unsigned int i(0); i<inv.size(); i++) for (unsigned int j(0); j < inv.size(); j++)
*(fPB.end()-1) += dataTrimSP.GetNofZ(inv[i].first, para[2])*fabs(inv[i].second); fPB[i] += dataTrimSP->GetNofZ(inv[j].first, para[2])*fabs(inv[j].second);
}
unsigned int lastZerosStart(fB.size());
// fill not used Bs after Bext with 0.0
double BmaxFFT(1.0/gBar/fDT);
for ( ; BB <= BmaxFFT ; BB += fDB )
fB.push_back(BB);
fPB.resize(fB.size(),0.0);
// make sure that we have an even number of elements in p(B) for FFT, so we do not have to care later
if (fB.size() % 2) {
fB.push_back(BB);
fPB.push_back(0.0);
} }
// normalize p(B) // normalize p(B)
@ -194,35 +203,35 @@ TPofBCalc::TPofBCalc( const TBofZCalcInverse &BofZ, const TTrimSPData &dataTrimS
} }
//----------- //-----------
// Constructor that does the P(B) calculation for given B(z) and n(z) // Calculate-method that does the P(B) calculation for given B(z) and n(z)
// Parameters: dt[us], dB[G], Energy[keV] // Parameters: dt[us], dB[G], Energy[keV]
//----------- //-----------
TPofBCalc::TPofBCalc( const TBofZCalc &BofZ, const TTrimSPData &dataTrimSP, const vector<double> &para, unsigned int zonk ) : fDT(para[0]), fDB(para[1]) { void TPofBCalc::Calculate(const TBofZCalc *BofZ, const TTrimSPData *dataTrimSP, const vector<double> &para, unsigned int zonk) {
fBmin = BofZ.GetBmin(); if(fPBExists)
fBmax = BofZ.GetBmax(); return;
fBmin = BofZ->GetBmin();
fBmax = BofZ->GetBmax();
int a1(static_cast<int>(floor(fBmin/fDB)));
int a2(static_cast<int>(ceil(fBmin/fDB)));
int a3(static_cast<int>(floor(fBmax/fDB)));
int a4(static_cast<int>(ceil(fBmax/fDB)));
unsigned int firstZerosEnd ((a1 < a2) ? a1 : ((a1 > 0) ? (a1 - 1) : 0));
unsigned int lastZerosStart ((a3 < a4) ? a4 : (a4 + 1));
double BB, BBnext; double BB, BBnext;
double zm, zp, zNext, dz; double zm, zp, zNext, dz;
// fill not used Bs before Bmin with 0.0
for (BB = 0.0; BB < fBmin; BB += fDB) {
fB.push_back(BB);
fPB.push_back(0.0);
}
unsigned int firstZerosEnd(fB.size());
// calculate p(B) from B(z) // calculate p(B) from B(z)
vector<double> bofzZ(BofZ.DataZ()); vector<double> *bofzZ = BofZ->DataZ();
vector<double> bofzBZ(BofZ.DataBZ()); vector<double> *bofzBZ = BofZ->DataBZ();
double ddZ(BofZ.GetDZ()); double ddZ(BofZ->GetDZ());
/* USED FOR DEBUGGING----------------------------------- /* USED FOR DEBUGGING-----------------------------------
cout << "Bmin = " << fBmin << ", Bmax = " << fBmax << endl; cout << "Bmin = " << fBmin << ", Bmax = " << fBmax << endl;
@ -281,19 +290,20 @@ TPofBCalc::TPofBCalc( const TBofZCalc &BofZ, const TTrimSPData &dataTrimSP, cons
double nn; double nn;
bool zNextFound(false); bool zNextFound(false);
for ( ; BB <= fBmax ; BB += fDB) { unsigned int i;
BBnext = BB + fDB;
fB.push_back(BB);
fPB.push_back(0.0);
for ( unsigned int j(0); j < bofzZ.size() - 1; j++ ) { for (i = 0; i <= lastZerosStart; i++) {
if ( bofzBZ[j] >= BB && bofzBZ[j+1] <= BB ) { BB = fB[i];
zm = (BB-bofzBZ[j])*ddZ/(bofzBZ[j+1]-bofzBZ[j]) + bofzZ[j]; BBnext = fB[i+1];
for ( unsigned int j(0); j < bofzZ->size() - 1; j++ ) {
if ( (*bofzBZ)[j] >= BB && (*bofzBZ)[j+1] <= BB ) {
zm = (BB-(*bofzBZ)[j])*ddZ/((*bofzBZ)[j+1]-(*bofzBZ)[j]) + (*bofzZ)[j];
for (unsigned int k(0); k < j; k++) { for (unsigned int k(0); k < j; k++) {
if ( ( bofzBZ[j-k] <= BBnext && bofzBZ[j-k-1] >= BBnext ) ) { if ( ( (*bofzBZ)[j-k] <= BBnext && (*bofzBZ)[j-k-1] >= BBnext ) ) {
// cout << "1 " << j << " " << k << endl; // cout << "1 " << j << " " << k << endl;
zNext = (BBnext-bofzBZ[j-k-1])*ddZ/(bofzBZ[j-k]-bofzBZ[j-k-1]) + bofzZ[j-k-1]; zNext = (BBnext-(*bofzBZ)[j-k-1])*ddZ/((*bofzBZ)[j-k]-(*bofzBZ)[j-k-1]) + (*bofzZ)[j-k-1];
zNextFound = true; zNextFound = true;
break; break;
} }
@ -303,20 +313,20 @@ TPofBCalc::TPofBCalc( const TBofZCalc &BofZ, const TTrimSPData &dataTrimSP, cons
zNextFound = false; zNextFound = false;
dz = zNext-zm; dz = zNext-zm;
nn = dataTrimSP.GetNofZ(zm, para[2]); nn = dataTrimSP->GetNofZ(zm, para[2]);
if (nn != -1.0) { if (nn != -1.0) {
// cout << "zNext = " << zNextm << ", zm = " << zm << ", dz = " << dz << endl; // cout << "zNext = " << zNextm << ", zm = " << zm << ", dz = " << dz << endl;
*(fPB.end()-1) += nn*fabs(dz/fDB); fPB[i] += nn*fabs(dz/fDB);
} }
} }
} else if (bofzBZ[j] <= BB && bofzBZ[j+1] >= BB ) { } else if ((*bofzBZ)[j] <= BB && (*bofzBZ)[j+1] >= BB ) {
zp = (BB-bofzBZ[j])*ddZ/(bofzBZ[j+1]-bofzBZ[j]) + bofzZ[j]; zp = (BB-(*bofzBZ)[j])*ddZ/((*bofzBZ)[j+1]-(*bofzBZ)[j]) + (*bofzZ)[j];
for (unsigned int k(0); k < bofzZ.size() - j - 1; k++) { for (unsigned int k(0); k < bofzZ->size() - j - 1; k++) {
if ( ( bofzBZ[j+k] <= BBnext && bofzBZ[j+k+1] >= BBnext ) ) { if ( ( (*bofzBZ)[j+k] <= BBnext && (*bofzBZ)[j+k+1] >= BBnext ) ) {
// cout << "2 " << j << " " << k << endl; // cout << "2 " << j << " " << k << endl;
zNext = (BBnext-bofzBZ[j+k])*ddZ/(bofzBZ[j+k+1]-bofzBZ[j+k]) + bofzZ[j+k]; zNext = (BBnext-(*bofzBZ)[j+k])*ddZ/((*bofzBZ)[j+k+1]-(*bofzBZ)[j+k]) + (*bofzZ)[j+k];
zNextFound = true; zNextFound = true;
break; break;
} }
@ -326,10 +336,10 @@ TPofBCalc::TPofBCalc( const TBofZCalc &BofZ, const TTrimSPData &dataTrimSP, cons
zNextFound = false; zNextFound = false;
dz = zNext-zp; dz = zNext-zp;
nn = dataTrimSP.GetNofZ(zp, para[2]); nn = dataTrimSP->GetNofZ(zp, para[2]);
if (nn != -1.0) { if (nn != -1.0) {
// cout << "zNext = " << zNextp << ", zp = " << zp << ", dz = " << dz << endl; // cout << "zNext = " << zNextp << ", zp = " << zp << ", dz = " << dz << endl;
*(fPB.end()-1) += nn*fabs(dz/fDB); fPB[i] += nn*fabs(dz/fDB);
} }
} }
} }
@ -337,114 +347,90 @@ TPofBCalc::TPofBCalc( const TBofZCalc &BofZ, const TTrimSPData &dataTrimSP, cons
} }
unsigned int lastZerosStart(fB.size()); bofzZ = 0;
bofzBZ = 0;
// fill not used Bs after Bext with 0.0
double BmaxFFT(1.0/gBar/fDT);
// cout << "N = " << int(BmaxFFT/para[1]+1.0) << endl;
for ( ; BB <= BmaxFFT ; BB += fDB ) {
fB.push_back(BB);
fPB.push_back(0.0);
}
// make sure that we have an even number of elements in p(B) for FFT, so we do not have to care later
if (fB.size() % 2) {
fB.push_back(BB);
fPB.push_back(0.0);
}
// cout << "size of B = " << fB.size() << ", size of p(B) = " << fPB.size() << endl;
// normalize p(B) // normalize p(B)
double pBsum = 0.0; double pBsum = 0.0;
for (unsigned int i(firstZerosEnd); i<lastZerosStart; i++) for (unsigned int i(firstZerosEnd); i<=lastZerosStart; i++)
pBsum += fPB[i]; pBsum += fPB[i];
pBsum *= fDB; pBsum *= fDB;
for (unsigned int i(firstZerosEnd); i<lastZerosStart; i++) for (unsigned int i(firstZerosEnd); i<=lastZerosStart; i++)
fPB[i] /= pBsum; fPB[i] /= pBsum;
fPBExists = true;
return;
} }
//----------- //-----------
// Constructor that does the P(B) calculation for a bulk vortex lattice // Calculate method that does the P(B) calculation for a bulk vortex lattice
// Parameters: dt[us], dB[G] [, Bbg[G], width[us^{-1}], weight[1] ] // Parameters: dt[us], dB[G] [, Bbg[G], width[us^{-1}], weight[1] ]
//----------- //-----------
TPofBCalc::TPofBCalc( const TBulkVortexFieldCalc &vortexLattice, const vector<double> &para ) : fDT(para[0]), fDB(para[1]) void TPofBCalc::Calculate(const TBulkVortexFieldCalc *vortexLattice, const vector<double> &para) {
{
fBmin = vortexLattice.GetBmin(); if(fPBExists)
fBmax = vortexLattice.GetBmax(); return;
unsigned int a1(static_cast<int>(floor(fBmin/fDB))); fBmin = vortexLattice->GetBmin();
unsigned int a2(static_cast<int>(ceil(fBmin/fDB))); fBmax = vortexLattice->GetBmax();
unsigned int a3(static_cast<int>(floor(fBmax/fDB)));
unsigned int a4(static_cast<int>(ceil(fBmax/fDB)));
unsigned int firstZerosEnd ((a1 != a2) ? a1 : (a1 - 1)); int a1(static_cast<int>(floor(fBmin/fDB)));
unsigned int lastZerosStart ((a3 != a4) ? a4 : (a4 + 1)); int a2(static_cast<int>(ceil(fBmin/fDB)));
int a3(static_cast<int>(floor(fBmax/fDB)));
int a4(static_cast<int>(ceil(fBmax/fDB)));
// fill the B vector unsigned int firstZerosEnd ((a1 < a2) ? a1 : ((a1 > 0) ? (a1 - 1) : 0));
unsigned int indexBmaxFFT(static_cast<int>(ceil(1.0/(gBar*fDT*fDB)))); unsigned int lastZerosStart ((a3 < a4) ? a4 : (a4 + 1));
fB.resize(indexBmaxFFT, 0.0); unsigned int numberOfSteps(vortexLattice->GetNumberOfSteps());
fPB.resize(indexBmaxFFT, 0.0); unsigned int numberOfStepsSq(numberOfSteps*numberOfSteps);
unsigned int numberOfSteps_2(numberOfSteps/2);
unsigned int numberOfStepsSq_2(numberOfStepsSq/2);
if (lastZerosStart >= fPBSize)
lastZerosStart = fPBSize - 1;
// cout << endl << fBmin << " " << fBmax << " " << firstZerosEnd << " " << lastZerosStart << " " << numberOfPoints << endl;
if (!vortexLattice->GridExists()) {
vortexLattice->CalculateGrid();
}
double *vortexFields = vortexLattice->DataB();
unsigned int fill_index, counter(0);
for (unsigned int j(0); j < numberOfStepsSq_2; j++) {
fill_index = static_cast<unsigned int>(ceil(abs((vortexFields[j]/fDB))));
if (fill_index >= fPBSize)
fPB[fPBSize - 1] += 1.0;
else
fPB[fill_index] += 1.0;
counter++;
if (counter == numberOfSteps_2) { // sum only over the first quadrant of B(x,y)
counter = 0;
j += numberOfSteps_2;
}
}
vortexFields = 0;
double normalizer(static_cast<double>(numberOfStepsSq_2/2)*fDB);
int i; int i;
#pragma omp parallel for default(shared) private(i) schedule(dynamic)
for (i = 0; i < static_cast<int>(indexBmaxFFT); i++)
fB[i] = fDB*static_cast<double>(i);
// end pragma omp parallel
// make sure that we have an even number of elements in p(B) for FFT, so we do not have to care later
if (fB.size() % 2) {
fB.push_back(*(fB.end()-1)+fDB);
fPB.push_back(0.0);
}
vector< vector<double> > vortexFields(vortexLattice.DataB());
if (vortexFields.empty()) {
vortexLattice.CalculateGrid();
vortexFields = vortexLattice.DataB();
}
unsigned int numberOfPoints(vortexFields.size());
for (unsigned int j(0); j < numberOfPoints; j++){
for (unsigned int k(0); k < numberOfPoints; k++){
fPB[static_cast<int>(ceil(vortexFields[j][k]/fDB))] += 1.0;
}
}
double normalizer(static_cast<double>(numberOfPoints*numberOfPoints)*fDB);
#pragma omp parallel for default(shared) private(i) schedule(dynamic) #pragma omp parallel for default(shared) private(i) schedule(dynamic)
for (i = firstZerosEnd; i <= static_cast<int>(lastZerosStart); i++) { for (i = firstZerosEnd; i <= static_cast<int>(lastZerosStart); i++) {
fPB[i] /= normalizer; fPB[i] /= normalizer;
} }
// end pragma omp parallel // end pragma omp parallel
// // normalize p(B)
//
// double pBsum = 0.0;
// for (unsigned int i(firstZerosEnd); i<lastZerosStart; i++)
// pBsum += fPB[i];
// pBsum *= fDB;
// for (unsigned int i(firstZerosEnd); i<lastZerosStart; i++)
// fPB[i] /= pBsum;
if(para.size() == 5) if(para.size() == 5)
AddBackground(para[2], para[3], para[4]); AddBackground(para[2], para[3], para[4]);
fPBExists = true;
return;
} }
// TPofBCalc::AddBackground, Parameters: field B[G], width s[us], weight w // TPofBCalc::AddBackground, Parameters: field B[G], width s[us], weight w
void TPofBCalc::AddBackground(double B, double s, double w) { void TPofBCalc::AddBackground(double B, double s, double w) {
@ -452,25 +438,24 @@ void TPofBCalc::AddBackground(double B, double s, double w) {
if(!s || w<0.0 || w>1.0 || B<0.0) if(!s || w<0.0 || w>1.0 || B<0.0)
return; return;
unsigned int sizePB(fPB.size());
double BsSq(s*s/(gBar*gBar*4.0*pi*pi)); double BsSq(s*s/(gBar*gBar*4.0*pi*pi));
// calculate Gaussian background // calculate Gaussian background
vector<double> bg; double bg[fPBSize];
for(unsigned int i(0); i < sizePB; i++) { for(unsigned int i(0); i < fPBSize; i++) {
bg.push_back(exp(-(fB[i]-B)*(fB[i]-B)/(2.0*BsSq))); bg[i] = exp(-(fB[i]-B)*(fB[i]-B)/(2.0*BsSq));
} }
// normalize background // normalize background
double bgsum(0.0); double bgsum(0.0);
for (unsigned int i(0); i < sizePB; i++) for (unsigned int i(0); i < fPBSize; i++)
bgsum += bg[i]; bgsum += bg[i];
bgsum *= fDB; bgsum *= fDB;
for (unsigned int i(0); i < sizePB; i++) for (unsigned int i(0); i < fPBSize; i++)
bg[i] /= bgsum; bg[i] /= bgsum;
// add background to P(B) // add background to P(B)
for (unsigned int i(0); i < sizePB; i++) for (unsigned int i(0); i < fPBSize; i++)
fPB[i] = (1.0 - w)*fPB[i] + w*bg[i]; fPB[i] = (1.0 - w)*fPB[i] + w*bg[i];
// // check if normalization is still valid // // check if normalization is still valid
@ -487,30 +472,19 @@ void TPofBCalc::ConvolveGss(double w) {
if(!w) if(!w)
return; return;
unsigned int NFFT; unsigned int NFFT(fPBSize);
double TBin; double TBin;
fftw_plan FFTplanToTimeDomain; fftw_plan FFTplanToTimeDomain;
fftw_plan FFTplanToFieldDomain; fftw_plan FFTplanToFieldDomain;
fftw_complex *FFTout; fftw_complex *FFTout;
double *FFTin;
NFFT = ( int(1.0/gBar/fDT/fDB+1.0) % 2 ) ? int(1.0/gBar/fDT/fDB+2.0) : int(1.0/gBar/fDT/fDB+1.0); TBin = 1.0/(gBar*double(NFFT-1)*fDB);
TBin = 1.0/gBar/double(NFFT-1)/fDB;
FFTin = (double *)malloc(sizeof(double) * NFFT); FFTout = new fftw_complex[NFFT/2 + 1]; //(fftw_complex *)fftw_malloc(sizeof(fftw_complex) * (NFFT/2+1));
FFTout = (fftw_complex *)fftw_malloc(sizeof(fftw_complex) * (NFFT/2+1));
// do the FFT to time domain // do the FFT to time domain
FFTplanToTimeDomain = fftw_plan_dft_r2c_1d(NFFT, FFTin, FFTout, FFTW_ESTIMATE); FFTplanToTimeDomain = fftw_plan_dft_r2c_1d(NFFT, fPB, FFTout, FFTW_ESTIMATE);
for (unsigned int i(0); i<NFFT; i++) {
FFTin[i] = fPB[i];
}
for (unsigned int i(0); i<NFFT/2+1; i++) {
FFTout[i][0] = 0.0;
FFTout[i][1] = 0.0;
}
fftw_execute(FFTplanToTimeDomain); fftw_execute(FFTplanToTimeDomain);
@ -519,37 +493,33 @@ void TPofBCalc::ConvolveGss(double w) {
double GssInTimeDomain; double GssInTimeDomain;
double expo(-2.0*PI*PI*gBar*gBar*w*w*TBin*TBin); double expo(-2.0*PI*PI*gBar*gBar*w*w*TBin*TBin);
for (unsigned int i(0); i<NFFT/2+1; i++) { for (unsigned int i(0); i < NFFT/2+1; i++) {
GssInTimeDomain = exp(expo*double(i)*double(i)); GssInTimeDomain = exp(expo*static_cast<double>(i*i));
FFTout[i][0] *= GssInTimeDomain; FFTout[i][0] *= GssInTimeDomain;
FFTout[i][1] *= GssInTimeDomain; FFTout[i][1] *= GssInTimeDomain;
} }
// FFT back to the field domain // FFT back to the field domain
FFTplanToFieldDomain = fftw_plan_dft_c2r_1d(NFFT, FFTout, FFTin, FFTW_ESTIMATE); FFTplanToFieldDomain = fftw_plan_dft_c2r_1d(NFFT, FFTout, fPB, FFTW_ESTIMATE);
fftw_execute(FFTplanToFieldDomain); fftw_execute(FFTplanToFieldDomain);
for (unsigned int i(0); i<NFFT; i++) {
fPB[i] = FFTin[i];
}
// cleanup // cleanup
fftw_destroy_plan(FFTplanToTimeDomain); fftw_destroy_plan(FFTplanToTimeDomain);
fftw_destroy_plan(FFTplanToFieldDomain); fftw_destroy_plan(FFTplanToFieldDomain);
free(FFTin); delete[] FFTout; // fftw_free(FFTout);
fftw_free(FFTout); FFTout = 0;
// fftw_cleanup(); // fftw_cleanup();
// normalize p(B) // normalize p(B)
double pBsum = 0.0; double pBsum = 0.0;
for (unsigned int i(0); i<NFFT; i++) for (unsigned int i(0); i < NFFT; i++)
pBsum += fPB[i]; pBsum += fPB[i];
pBsum *= fDB; pBsum *= fDB;
for (unsigned int i(0); i<NFFT; i++) for (unsigned int i(0); i < NFFT; i++)
fPB[i] /= pBsum; fPB[i] /= pBsum;
return; return;

182
src/external/TFitPofB-lib/classes/TPofTCalc.cpp vendored
View File

@ -16,8 +16,8 @@
***************************************************************************/ ***************************************************************************/
/*************************************************************************** /***************************************************************************
* Copyright (C) 2008 by Andreas Suter * * Copyright (C) 2008-2009 by Bastian M. Wojek, Andreas Suter *
* andreas.suter@psi.ch * * *
* * * *
* This program is free software; you can redistribute it and/or modify * * This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by * * it under the terms of the GNU General Public License as published by *
@ -63,7 +63,7 @@
// Parameters: phase, dt, dB // Parameters: phase, dt, dB
//------------------ //------------------
TPofTCalc::TPofTCalc (const string &wisdom, const vector<double> &par) : fWisdom(wisdom) { TPofTCalc::TPofTCalc (const TPofBCalc *PofB, const string &wisdom, const vector<double> &par) : fWisdom(wisdom) {
int init_threads(fftw_init_threads()); int init_threads(fftw_init_threads());
if (!init_threads) if (!init_threads)
@ -71,88 +71,95 @@ TPofTCalc::TPofTCalc (const string &wisdom, const vector<double> &par) : fWisdom
else else
fftw_plan_with_nthreads(2); fftw_plan_with_nthreads(2);
fNFFT = ( int(1.0/gBar/par[1]/par[2]+1.0) % 2 ) ? int(1.0/gBar/par[1]/par[2]+2.0) : int(1.0/gBar/par[1]/par[2]+1.0); fNFFT = static_cast<int>(1.0/(gBar*par[1]*par[2]));
fTBin = 1.0/gBar/double(fNFFT-1)/par[2]; if (fNFFT % 2) {
fNFFT += 1;
} else {
fNFFT += 2;
}
fT.resize(fNFFT/2+1); fTBin = 1.0/(gBar*double(fNFFT-1)*par[2]);
fPT.resize(fNFFT/2+1);
int NFFT_2p1(fNFFT/2 + 1);
// allocating memory for the time- and polarisation vectors
fT = new double[NFFT_2p1]; //static_cast<double *>(malloc(sizeof(double) * NFFT_2p1));
fPT = new double[NFFT_2p1]; //static_cast<double *>(malloc(sizeof(double) * NFFT_2p1));
int i; int i;
#pragma omp parallel for default(shared) private(i) schedule(dynamic) #pragma omp parallel for default(shared) private(i) schedule(dynamic)
for (i=0; i<fNFFT/2+1; i++){ for (i = 0; i < NFFT_2p1; i++) {
fT[i] = double(i)*fTBin; fT[i] = static_cast<double>(i)*fTBin;
} }
fFFTin = (double *)malloc(sizeof(double) * fNFFT); fFFTin = PofB->DataPB();
fFFTout = (fftw_complex *)fftw_malloc(sizeof(fftw_complex) * (fNFFT/2+1)); fFFTout = new fftw_complex[NFFT_2p1]; //static_cast<fftw_complex *>(fftw_malloc(sizeof(fftw_complex) * NFFT_2p1));
cout << "TPofTCalc::TPofTCalc: Check for the FFT plan..." << endl; // Load wisdom from file if it exists and should be used
// Load wisdom from file
fUseWisdom = true;
int wisdomLoaded(0); int wisdomLoaded(0);
FILE *wordsOfWisdomR; FILE *wordsOfWisdomR;
wordsOfWisdomR = fopen(fWisdom.c_str(), "r"); wordsOfWisdomR = fopen(wisdom.c_str(), "r");
if (wordsOfWisdomR == NULL) { if (wordsOfWisdomR == NULL) {
cout << "TPofTCalc::TPofTCalc: Couldn't open wisdom file ..." << endl; fUseWisdom = false;
} else { } else {
wisdomLoaded = fftw_import_wisdom_from_file(wordsOfWisdomR); wisdomLoaded = fftw_import_wisdom_from_file(wordsOfWisdomR);
fclose(wordsOfWisdomR); fclose(wordsOfWisdomR);
} }
if (!wisdomLoaded) { if (!wisdomLoaded) {
cout << "TPofTCalc::TPofTCalc: No wisdom is imported..." << endl; fUseWisdom = false;
} }
fFFTplan = fftw_plan_dft_r2c_1d(fNFFT, fFFTin, fFFTout, FFTW_EXHAUSTIVE); // create the FFT plan
// cout << &fFFTplan << endl; if (fUseWisdom)
fFFTplan = fftw_plan_dft_r2c_1d(fNFFT, fFFTin, fFFTout, FFTW_EXHAUSTIVE);
else
fFFTplan = fftw_plan_dft_r2c_1d(fNFFT, fFFTin, fFFTout, FFTW_ESTIMATE);
}
//---------------------
// Destructor of the TPofTCalc class - it saves the FFT plan and cleans up
//---------------------
TPofTCalc::~TPofTCalc() {
// if a wisdom file is used export the wisdom so it has not to be checked for the FFT-plan next time
if (fUseWisdom) {
FILE *wordsOfWisdomW;
wordsOfWisdomW = fopen(fWisdom.c_str(), "w");
if (wordsOfWisdomW == NULL) {
cout << "TPofTCalc::~TPofTCalc(): Could not open file ... No wisdom is exported..." << endl;
} else {
fftw_export_wisdom_to_file(wordsOfWisdomW);
fclose(wordsOfWisdomW);
}
}
// clean up
fftw_destroy_plan(fFFTplan);
delete[] fFFTout; //fftw_free(fFFTout);
fFFTout = 0;
// fftw_cleanup();
// fftw_cleanup_threads();
delete[] fT;
fT = 0;
delete[] fPT;
fPT = 0;
} }
//-------------- //--------------
// Method that does the FFT of a given p(B) // Method that does the FFT of a given p(B)
//-------------- //--------------
void TPofTCalc::DoFFT(const TPofBCalc &PofB) { void TPofTCalc::DoFFT() {
vector<double> pB(PofB.DataPB());
/* USED FOR DEBUGGING -----------------------
time_t seconds;
seconds = time(NULL);
vector<double> B(PofB.DataB());
double Bmin(PofB.GetBmin());
char debugfile[50];
int n = sprintf (debugfile, "test_PB_%ld_%f.dat", seconds, Bmin);
if (n > 0) {
ofstream of(debugfile);
for (unsigned int i(0); i<B.size(); i++) {
of << B[i] << " " << pB[i] << endl;
}
of.close();
}
/--------------------------------------------*/
int i;
#pragma omp parallel for default(shared) private(i) schedule(dynamic)
for (i=0; i<fNFFT; i++) {
fFFTin[i] = pB[i];
}
// for (unsigned int i(0); i<fNFFT/2+1; i++) {
// fFFTout[i][0] = 0.0;
// fFFTout[i][1] = 0.0;
// }
// cout << "perform the Fourier transform..." << endl;
fftw_execute(fFFTplan); fftw_execute(fFFTplan);
@ -170,11 +177,26 @@ void TPofTCalc::CalcPol(const vector<double> &par) {
#pragma omp parallel for default(shared) private(i) schedule(dynamic) #pragma omp parallel for default(shared) private(i) schedule(dynamic)
for (i=0; i<fNFFT/2+1; i++){ for (i=0; i<fNFFT/2+1; i++){
// fT[i] = double(i)*fTBin;
fPT[i] = cosph*fFFTout[i][0]*par[2] + sinph*fFFTout[i][1]*par[2]; fPT[i] = cosph*fFFTout[i][0]*par[2] + sinph*fFFTout[i][1]*par[2];
} }
} }
//---------------------
// Method for evaluating P(t) at a given t
//---------------------
double TPofTCalc::Eval(double t) const {
int i(static_cast<int>(t/fTBin));
if (i < fNFFT/2){
return fPT[i]+(fPT[i+1]-fPT[i])/(fT[i+1]-fT[i])*(t-fT[i]);
}
cout << "TPofTCalc::Eval: No data for the time " << t << " us available! Returning -999.0 ..." << endl;
return -999.0;
}
//--------------------- //---------------------
// Method for generating fake LEM decay histograms from p(B) // Method for generating fake LEM decay histograms from p(B)
// Parameters: output filename, par(dt, dB, timeres, channels, asyms, phases, t0s, N0s, bgs) // Parameters: output filename, par(dt, dB, timeres, channels, asyms, phases, t0s, N0s, bgs)
@ -381,49 +403,5 @@ void TPofTCalc::FakeData(const string &rootOutputFileName, const vector<double>
return; return;
} }
//---------------------
// Method for evaluating P(t) at a given t
//---------------------
double TPofTCalc::Eval(double t) const {
unsigned int i(int(t/fTBin));
if (i<fT.size()-1)
return fPT[i]+(fPT[i+1]-fPT[i])/(fT[i+1]-fT[i])*(t-fT[i]);
// for (unsigned int i(0); i<fT.size()-1; i++) {
// if (t < fT[i+1])
// return fPT[i]+(fPT[i+1]-fPT[i])/(fT[i+1]-fT[i])*(t-fT[i]);
// }
cout << "TPofTCalc::Eval: No data for the time " << t << " us available! Returning -999.0 ..." << endl;
return -999.0;
}
//---------------------
// Destructor of the TPofTCalc class - it saves the FFT plan and cleans up
//---------------------
TPofTCalc::~TPofTCalc() {
// export wisdom so it has not to be checked for the FFT-plan next time
FILE *wordsOfWisdomW;
wordsOfWisdomW = fopen(fWisdom.c_str(), "w");
if (wordsOfWisdomW == NULL) {
cout << "TPofTCalc::~TPofTCalc(): Could not open file ... No wisdom is exported..." << endl;
}
fftw_export_wisdom_to_file(wordsOfWisdomW);
fclose(wordsOfWisdomW);
fftw_destroy_plan(fFFTplan);
free(fFFTin);
fftw_free(fFFTout);
// fftw_cleanup();
// fftw_cleanup_threads();
fT.clear();
fPT.clear();
}

33
src/external/TFitPofB-lib/classes/TSkewedGss.cpp vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include "TSkewedGss.h" #include "TSkewedGss.h"
#include <iostream> #include <iostream>
#include <cassert> #include <cassert>
@ -27,6 +47,8 @@ TSkewedGss::~TSkewedGss() {
fPar.clear(); fPar.clear();
fParForPofB.clear(); fParForPofB.clear();
fParForPofT.clear(); fParForPofT.clear();
delete fPofB;
fPofB = 0;
delete fPofT; delete fPofT;
fPofT = 0; fPofT = 0;
} }
@ -61,10 +83,13 @@ TSkewedGss::TSkewedGss() : fCalcNeeded(true), fFirstCall(true) {
fParForPofB.push_back(0.0); // s- fParForPofB.push_back(0.0); // s-
fParForPofB.push_back(0.0); // s+ fParForPofB.push_back(0.0); // s+
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TPofBCalc *x = new TPofBCalc(fParForPofB);
fPofB = x;
x = 0;
TPofTCalc *y = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = y; fPofT = y;
y = 0; y = 0;
delete y;
// clean up // clean up
if (saxParser) { if (saxParser) {
@ -131,8 +156,8 @@ double TSkewedGss::operator()(double t, const vector<double> &par) const {
fParForPofB[3] = par[2]; // sigma- fParForPofB[3] = par[2]; // sigma-
fParForPofB[4] = par[3]; // sigma+ fParForPofB[4] = par[3]; // sigma+
TPofBCalc PofB("skg", fParForPofB); fPofB->Calculate("skg", fParForPofB);
fPofT->DoFFT(PofB); fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;

20
src/external/TFitPofB-lib/classes/TTrimSPDataHandler.cpp vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include "TTrimSPDataHandler.h" #include "TTrimSPDataHandler.h"
#include <iostream> #include <iostream>
#include <fstream> #include <fstream>

63
src/external/TFitPofB-lib/classes/TVortex.cpp vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#include "TVortex.h" #include "TVortex.h"
#include <iostream> #include <iostream>
#include <cassert> #include <cassert>
@ -25,12 +45,16 @@ ClassImp(TBulkTriVortexLondon)
//------------------ //------------------
TBulkTriVortexLondon::~TBulkTriVortexLondon() { TBulkTriVortexLondon::~TBulkTriVortexLondon() {
delete fPofT;
fPofT = 0;
delete fPofB;
fPofT = 0;
delete fVortex;
fVortex = 0;
fPar.clear(); fPar.clear();
fParForVortex.clear(); fParForVortex.clear();
fParForPofB.clear(); fParForPofB.clear();
fParForPofT.clear(); fParForPofT.clear();
delete fPofT;
fPofT = 0;
} }
//------------------ //------------------
@ -54,9 +78,8 @@ TBulkTriVortexLondon::TBulkTriVortexLondon() : fCalcNeeded(true), fFirstCall(tru
fGridSteps = startupHandler->GetGridSteps(); fGridSteps = startupHandler->GetGridSteps();
fWisdom = startupHandler->GetWisdomFile(); fWisdom = startupHandler->GetWisdomFile();
fVortexFourierComp = startupHandler->GetVortexFourierComp();
fParForVortex.clear(); fParForVortex.resize(3); // field, lambda, xi
fParForPofT.push_back(0.0); fParForPofT.push_back(0.0);
fParForPofT.push_back(startupHandler->GetDeltat()); fParForPofT.push_back(startupHandler->GetDeltat());
@ -69,10 +92,18 @@ TBulkTriVortexLondon::TBulkTriVortexLondon() : fCalcNeeded(true), fFirstCall(tru
fParForPofB.push_back(0.005); // Bkg-width fParForPofB.push_back(0.005); // Bkg-width
fParForPofB.push_back(0.0); // Bkg-weight fParForPofB.push_back(0.0); // Bkg-weight
TPofTCalc *y = new TPofTCalc(fWisdom, fParForPofT); TBulkTriVortexLondonFieldCalc *x = new TBulkTriVortexLondonFieldCalc(fWisdom, fGridSteps);
fPofT = y; fVortex = x;
x = 0;
TPofBCalc *y = new TPofBCalc(fParForPofB);
fPofB = y;
y = 0; y = 0;
TPofTCalc *z = new TPofTCalc(fPofB, fWisdom, fParForPofT);
fPofT = z;
z = 0;
// clean up // clean up
if (saxParser) { if (saxParser) {
delete saxParser; delete saxParser;
@ -87,7 +118,7 @@ TBulkTriVortexLondon::TBulkTriVortexLondon() : fCalcNeeded(true), fFirstCall(tru
//------------------ //------------------
// TBulkTriVortexLondon-Method that calls the procedures to create B(x,y), p(B) and P(t) // TBulkTriVortexLondon-Method that calls the procedures to create B(x,y), p(B) and P(t)
// It finally returns P(t) for a given t. // It finally returns P(t) for a given t.
// Parameters: all the parameters for the function to be fitted through TBulkTriVortexLondon (phase, appl.field, lambda, xi) // Parameters: all the parameters for the function to be fitted through TBulkTriVortexLondon (phase, appl.field, lambda, xi, [not implemented: bkg weight])
//------------------ //------------------
double TBulkTriVortexLondon::operator()(double t, const vector<double> &par) const { double TBulkTriVortexLondon::operator()(double t, const vector<double> &par) const {
@ -102,8 +133,8 @@ double TBulkTriVortexLondon::operator()(double t, const vector<double> &par) con
if(fFirstCall){ if(fFirstCall){
fPar = par; fPar = par;
for (unsigned int i(1); i < 4; i++){ for (unsigned int i(0); i < 3; i++){
fParForVortex.push_back(fPar[i]); fParForVortex[i] = fPar[i+1];
} }
fFirstCall = false; fFirstCall = false;
} }
@ -138,16 +169,18 @@ double TBulkTriVortexLondon::operator()(double t, const vector<double> &par) con
// cout << " Parameters have changed, (re-)calculating p(B) and P(t) now..." << endl; // cout << " Parameters have changed, (re-)calculating p(B) and P(t) now..." << endl;
fParForVortex[0] = par[2]; // lambda for (unsigned int i(0); i < 3; i++) {
fParForVortex[1] = par[3]; // xi fParForVortex[i] = par[i+1];
fParForVortex[2] = par[1]; // field }
fParForPofB[2] = par[1]; // Bkg-Field fParForPofB[2] = par[1]; // Bkg-Field
//fParForPofB[3] = 0.005; // Bkg-width (in principle zero) //fParForPofB[3] = 0.005; // Bkg-width (in principle zero)
TBulkTriVortexLondonFieldCalc vortexLattice(fParForVortex, fGridSteps, fVortexFourierComp); fVortex->SetParameters(fParForVortex);
TPofBCalc PofB(vortexLattice, fParForPofB); fVortex->CalculateGrid();
fPofT->DoFFT(PofB); fPofB->UnsetPBExists();
fPofB->Calculate(fVortex, fParForPofB);
fPofT->DoFFT();
}/* else { }/* else {
cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl; cout << "Only the phase parameter has changed, (re-)calculating P(t) now..." << endl;

28
src/external/TFitPofB-lib/include/TBofZCalc.h vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TBofZCalc_H_ #ifndef _TBofZCalc_H_
#define _TBofZCalc_H_ #define _TBofZCalc_H_
@ -31,8 +51,8 @@ public:
fParam.clear(); fParam.clear();
} }
virtual vector<double> DataZ() const {return fZ;} virtual vector<double>* DataZ() const {return &fZ;}
virtual vector<double> DataBZ() const {return fBZ;} virtual vector<double>* DataBZ() const {return &fBZ;}
virtual void Calculate(); virtual void Calculate();
virtual double GetBofZ(double) const = 0; virtual double GetBofZ(double) const = 0;
virtual double GetBmin() const = 0; virtual double GetBmin() const = 0;
@ -43,8 +63,8 @@ protected:
int fSteps; int fSteps;
double fDZ; double fDZ;
vector<double> fParam; vector<double> fParam;
vector<double> fZ; mutable vector<double> fZ;
vector<double> fBZ; mutable vector<double> fBZ;
}; };
//-------------------- //--------------------

53
src/external/TFitPofB-lib/include/TBulkVortexFieldCalc.h vendored
View File

@ -9,12 +9,35 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TBulkVortexFieldCalc_H_ #ifndef _TBulkVortexFieldCalc_H_
#define _TBulkVortexFieldCalc_H_ #define _TBulkVortexFieldCalc_H_
#include <vector> #include <vector>
#include <string>
using namespace std; using namespace std;
#include <fftw3.h>
//-------------------- //--------------------
// Base class for any kind of vortex symmetry // Base class for any kind of vortex symmetry
//-------------------- //--------------------
@ -25,43 +48,43 @@ public:
TBulkVortexFieldCalc() {} TBulkVortexFieldCalc() {}
virtual ~TBulkVortexFieldCalc() { virtual ~TBulkVortexFieldCalc();
for(unsigned int i(0); i < fB.size(); i++)
fB[i].clear();
fB.clear();
fParam.clear();
}
virtual vector< vector<double> > DataB() const {return fB;} virtual double* DataB() const {return fFFTout;}
virtual void SetParameters(const vector<double>& par) {fParam = par; fGridExists = false;}
virtual void CalculateGrid() const = 0; virtual void CalculateGrid() const = 0;
virtual double GetBatPoint(double, double) const = 0;
virtual double GetBmin() const = 0; virtual double GetBmin() const = 0;
virtual double GetBmax() const = 0; virtual double GetBmax() const = 0;
virtual bool GridExists() const {return fGridExists;}
virtual void UnsetGridExists() const {fGridExists = false;}
virtual unsigned int GetNumberOfSteps() const {return fSteps;}
protected: protected:
vector<double> fParam;
unsigned int fSteps; // number of steps, the "unit cell" of the vortex lattice is devided in (in x- and y- direction) unsigned int fSteps; // number of steps, the "unit cell" of the vortex lattice is devided in (in x- and y- direction)
vector<double> fParam; // lambda, xi, appl.field fftw_complex *fFFTin; // Fourier components of the field
mutable vector< vector<double> > fB; // fields in a "unit cell" of the vortex lattice double *fFFTout; // fields in a "unit cell" of the vortex lattice
fftw_plan fFFTplan;
bool fUseWisdom;
string fWisdom;
mutable bool fGridExists;
}; };
//-------------------- //--------------------
// Class for triangular vortex lattice, London model // Class for triangular vortex lattice, London model with Gaussian Cutoff
//-------------------- //--------------------
class TBulkTriVortexLondonFieldCalc : public TBulkVortexFieldCalc { class TBulkTriVortexLondonFieldCalc : public TBulkVortexFieldCalc {
public: public:
TBulkTriVortexLondonFieldCalc(const vector<double>&, const unsigned int steps = 200, const unsigned int Ncomp = 17); TBulkTriVortexLondonFieldCalc(const string&, const unsigned int steps = 256);
~TBulkTriVortexLondonFieldCalc() {} ~TBulkTriVortexLondonFieldCalc() {}
void CalculateGrid() const; void CalculateGrid() const;
double GetBatPoint(double, double) const;
double GetBmin() const; double GetBmin() const;
double GetBmax() const; double GetBmax() const;
private:
unsigned int fNFourierComp;
}; };
#endif // _TBulkVortexFieldCalc_H_ #endif // _TBulkVortexFieldCalc_H_

22
src/external/TFitPofB-lib/include/TFitPofBStartupHandlerLinkDef.h vendored
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@ -1,6 +1,6 @@
/*************************************************************************** /***************************************************************************
TLondon1DLinkDef.h TFitPofBStartupHandlerLinkDef.h
Author: Bastian M. Wojek Author: Bastian M. Wojek
e-mail: bastian.wojek@psi.ch e-mail: bastian.wojek@psi.ch
@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
// root dictionary stuff -------------------------------------------------- // root dictionary stuff --------------------------------------------------
#ifdef __CINT__ #ifdef __CINT__

28
src/external/TFitPofB-lib/include/TLondon1D.h vendored
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@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TLondon1D_H_ #ifndef _TLondon1D_H_
#define _TLondon1D_H_ #define _TLondon1D_H_
@ -27,6 +47,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
@ -51,6 +72,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
@ -76,6 +98,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
@ -101,6 +124,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
@ -125,6 +149,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
@ -150,6 +175,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
@ -176,6 +202,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
@ -226,6 +253,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TTrimSPData *fImpProfile; TTrimSPData *fImpProfile;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;

20
src/external/TFitPofB-lib/include/TLondon1DLinkDef.h vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
// root dictionary stuff -------------------------------------------------- // root dictionary stuff --------------------------------------------------
#ifdef __CINT__ #ifdef __CINT__

50
src/external/TFitPofB-lib/include/TPofBCalc.h vendored
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@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TPofBCalc_H_ #ifndef _TPofBCalc_H_
#define _TPofBCalc_H_ #define _TPofBCalc_H_
@ -23,30 +43,38 @@ class TPofBCalc {
public: public:
TPofBCalc( const string&, const vector<double>& ); // standard constructor: allocates memory for B and PB, the arrays are filled later by one of the Calculate-methods
TPofBCalc( const TBofZCalc&, const TTrimSPData&, const vector<double>&, unsigned int ); TPofBCalc(const vector<double>&);
TPofBCalc( const TBofZCalcInverse&, const TTrimSPData&, const vector<double>& ); // alternative constructor: PB is not actually calculated but copied from a vector
TPofBCalc( const TBulkVortexFieldCalc&, const vector<double>& ); TPofBCalc(const vector<double>&, const vector<double>& , double dt = 0.01);
TPofBCalc( const vector<double>&, const vector<double>& , double dt = 0.01 );
~TPofBCalc() { ~TPofBCalc() {
fB.clear(); delete[] fB; fB = 0;
fPB.clear(); delete[] fPB; fPB = 0;
} }
vector<double> DataB() const {return fB;} void Calculate(const string&, const vector<double>&);
vector<double> DataPB() const {return fPB;} void Calculate(const TBofZCalc*, const TTrimSPData*, const vector<double>&, unsigned int);
void Calculate(const TBofZCalcInverse*, const TTrimSPData*, const vector<double>&);
void Calculate(const TBulkVortexFieldCalc*, const vector<double>&);
const double* DataB() const {return fB;}
double* DataPB() const {return fPB;}
double GetBmin() const {return fBmin;} double GetBmin() const {return fBmin;}
double GetBmax() const {return fBmax;} double GetBmax() const {return fBmax;}
unsigned int GetPBSize() const {return fPBSize;}
void ConvolveGss(double); void ConvolveGss(double);
void AddBackground(double, double, double); void AddBackground(double, double, double);
void UnsetPBExists();
private: private:
vector<double> fB; double *fB;
vector<double> fPB; mutable double *fPB;
double fBmin; double fBmin;
double fBmax; double fBmax;
double fDT; double fDT;
double fDB; double fDB;
mutable bool fPBExists;
unsigned int fPBSize;
}; };
#endif // _TPofBCalc_H_ #endif // _TPofBCalc_H_

37
src/external/TFitPofB-lib/include/TPofTCalc.h vendored
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@ -9,11 +9,31 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TPofTCalc_H_ #ifndef _TPofTCalc_H_
#define _TPofTCalc_H_ #define _TPofTCalc_H_
#include "TPofBCalc.h" #include "TPofBCalc.h"
#include "fftw3.h" #include <fftw3.h>
#include <string> #include <string>
#define PI 3.14159265358979323846 #define PI 3.14159265358979323846
@ -23,25 +43,26 @@ class TPofTCalc {
public: public:
TPofTCalc(const string&, const vector<double>&); TPofTCalc(const TPofBCalc*, const string&, const vector<double>&);
~TPofTCalc(); ~TPofTCalc();
vector<double> DataT() const {return fT;} const double* DataT() const {return fT;}
vector<double> DataPT() const {return fPT;} const double* DataPT() const {return fPT;}
void DoFFT(const TPofBCalc&); void DoFFT();
void CalcPol(const vector<double>&); void CalcPol(const vector<double>&);
void FakeData(const string&, const vector<double>&); void FakeData(const string&, const vector<double>&);
double Eval(double) const; double Eval(double) const;
private: private:
fftw_plan fFFTplan; fftw_plan fFFTplan;
fftw_complex *fFFTout;
double *fFFTin; double *fFFTin;
vector<double> fT; fftw_complex *fFFTout;
vector<double> fPT; double *fT;
double *fPT;
double fTBin; double fTBin;
int fNFFT; int fNFFT;
const string fWisdom; const string fWisdom;
bool fUseWisdom;
}; };

21
src/external/TFitPofB-lib/include/TSkewedGss.h vendored
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@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TSkewedGss_H_ #ifndef _TSkewedGss_H_
#define _TSkewedGss_H_ #define _TSkewedGss_H_
@ -26,6 +46,7 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;

20
src/external/TFitPofB-lib/include/TSkewedGssLinkDef.h vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
// root dictionary stuff -------------------------------------------------- // root dictionary stuff --------------------------------------------------
#ifdef __CINT__ #ifdef __CINT__

20
src/external/TFitPofB-lib/include/TTrimSPDataHandler.h vendored
View File

@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TTrimSPDataHandler_H_ #ifndef _TTrimSPDataHandler_H_
#define _TTrimSPDataHandler_H_ #define _TTrimSPDataHandler_H_

25
src/external/TFitPofB-lib/include/TVortex.h vendored
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@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef _TVortex_H_ #ifndef _TVortex_H_
#define _TVortex_H_ #define _TVortex_H_
@ -25,15 +45,16 @@ public:
private: private:
mutable vector<double> fPar; mutable vector<double> fPar;
TBulkTriVortexLondonFieldCalc *fVortex;
TPofBCalc *fPofB;
TPofTCalc *fPofT; TPofTCalc *fPofT;
mutable bool fCalcNeeded; mutable bool fCalcNeeded;
mutable bool fFirstCall; mutable bool fFirstCall;
mutable vector<double> fParForPofT;
mutable vector<double> fParForVortex; mutable vector<double> fParForVortex;
mutable vector<double> fParForPofB; mutable vector<double> fParForPofB;
mutable vector<double> fParForPofT;
string fWisdom; string fWisdom;
unsigned int fGridSteps; unsigned int fGridSteps;
unsigned int fVortexFourierComp;
ClassDef(TBulkTriVortexLondon,1) ClassDef(TBulkTriVortexLondon,1)
}; };

20
src/external/TFitPofB-lib/include/TVortexLinkDef.h vendored
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@ -9,6 +9,26 @@
***************************************************************************/ ***************************************************************************/
/***************************************************************************
* Copyright (C) 2009 by Bastian M. Wojek *
* *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
// root dictionary stuff -------------------------------------------------- // root dictionary stuff --------------------------------------------------
#ifdef __CINT__ #ifdef __CINT__

49
src/external/TFitPofB-lib/test/Makefile.testVortex-v2 vendored Normal file
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@ -0,0 +1,49 @@
#---------------------------------------------------
# get compilation and library flags from root-config
ROOTCFLAGS = $(shell $(ROOTSYS)/bin/root-config --cflags)
ROOTLIBS = $(shell $(ROOTSYS)/bin/root-config --libs)
#---------------------------------------------------
CXX = g++-4.4.0
CXXFLAGS = -O3 -Wall
LOCALINCLUDE = ../include
ROOTINCLUDE = $(ROOTSYS)/include
INCLUDES = -I$(LOCALINCLUDE) -I$(ROOTINCLUDE)
LD = g++-4.4.0
LDFLAGS = -O3 -L../classes -lTFitPofB -lfftw3_threads -lfftw3 -lm -lpthread -fopenmp -lPMusr
# the output from the root-config script:
CXXFLAGS += $(ROOTCFLAGS)
LDFLAGS +=
# the ROOT libraries
LIBS = $(ROOTLIBS) -lXMLParser -lMathMore
EXEC = testVortex-v2
# some definitions: headers, sources, objects,...
OBJS =
OBJS += $(EXEC).o
# make the executable:
#
all: $(EXEC)
$(EXEC): $(OBJS)
@echo "---> Building $(EXEC) ..."
$(LD) $(LDFLAGS) $(OBJS) -o $(EXEC) $(LIBS)
@echo "done"
# clean up: remove all object file (and core files)
# semicolon needed to tell make there is no source
# for this target!
#
clean:; @rm -f $(OBJS)
@echo "---> removing $(OBJS)"
#
$(OBJS): %.o: %.cpp
$(CXX) $(INCLUDES) $(CXXFLAGS) -c $<

635
src/external/TFitPofB-lib/test/testVortex-v2.cpp vendored Normal file
View File

@ -0,0 +1,635 @@
#include "TPofTCalc.h"
#include <iostream>
#include <fstream>
using namespace std;
#include <cstdio>
#include <sys/time.h>
int main(){
unsigned int NFFT(256);
vector<double> parForVortex;
parForVortex.resize(3);
// parForVortex[0] = 100.0; //app.field
// parForVortex[1] = 200.0; //lambda
// parForVortex[2] = 4.0; //xi
vector<double> parForPofB;
parForPofB.push_back(0.01); //dt
parForPofB.push_back(0.5); //dB
vector<double> parForPofT;
parForPofT.push_back(0.0); //phase
parForPofT.push_back(0.01); //dt
parForPofT.push_back(0.5); //dB
TBulkTriVortexLondonFieldCalc *vortexLattice = new TBulkTriVortexLondonFieldCalc("/home/l_wojek/analysis/WordsOfWisdom.dat", NFFT);
parForVortex[0] = 500.0; //app.field
parForVortex[1] = 300.0; //lambda
parForVortex[2] = 3.0; //xi
vortexLattice->SetParameters(parForVortex);
vortexLattice->CalculateGrid();
// ofstream ofy("testVortex-B.dat");
// for (unsigned int j(0); j < NFFT * NFFT; j++) {
// ofy << vortexLattice->DataB()[j] << " ";
// if (!((j+1)%(NFFT)))
// ofy << endl;
// }
// ofy.close();
TPofBCalc *PofB = new TPofBCalc(parForPofB);
PofB->Calculate(vortexLattice, parForPofB);
// const double *b(PofB->DataB());
// const double *pb(PofB->DataPB());
// unsigned int s(PofB->GetPBSize());
//
double test(0.0);
//
// ofstream ofx("testVortex.dat");
// for (unsigned int i(0); i < s; i++) {
// ofx << b[i] << " " << pb[i] << endl;
// test+=pb[i];
// }
// ofx.close();
// cout << test << endl;
TPofTCalc poft(PofB, "/home/l_wojek/analysis/WordsOfWisdom.dat", parForPofT);
poft.DoFFT();
poft.CalcPol(parForPofT);
// ofstream of8("testVortex-Pt.dat");
for (double i(0.); i<12.0; i+=0.003) {
test = poft.Eval(i);
// of8 << i << " " << poft.Eval(i) << endl;
}
// of8.close();
// parForVortex[0] = 500.0; //app.field
// parForVortex[1] = 100.0; //lambda
// parForVortex[2] = 3.0; //xi
//
// vortexLattice->SetParameters(parForVortex);
// vortexLattice->CalculateGrid();
// PofB->UnsetPBExists();
// PofB->Calculate(vortexLattice, parForPofB);
//
// poft.DoFFT();
// poft.CalcPol(parForPofT);
//
// ofstream of9("testVortex-Pt1.dat");
// for (double i(0.); i<12.0; i+=0.003) {
// // test = poft.Eval(i);
// of9 << i << " " << poft.Eval(i) << endl;
// }
// of9.close();
delete vortexLattice;
vortexLattice = 0;
delete PofB;
PofB = 0;
parForPofB.clear();
parForPofT.clear();
parForVortex.clear();
/*
double par_arr[] = {24.4974, E, 94.6, 10.0, 130.0};
vector<double> par_vec(par_arr, par_arr+(sizeof(par_arr)/sizeof(par_arr[0])));
vector<double> parForBofZ;
for (unsigned int i(2); i<par_vec.size(); i++)
parForBofZ.push_back(par_vec[i]);
vector<double> parForPofB;
parForPofB.push_back(0.01); //dt
parForPofB.push_back(0.1); //dB
parForPofB.push_back(par_vec[1]);
parForPofB.push_back(par_vec[2]); // Bkg-Field
parForPofB.push_back(0.005); // Bkg-width (in principle zero)
vector<double> interfaces;
interfaces.push_back(par_vec[3]); // dead layer
parForPofB.push_back(calcData.LayerFraction(par_vec[1], 1, interfaces)); // Fraction of muons in the deadlayer
vector<double> zonk;
vector<double> donk;
vector<double> hurgaB;
vector<double> hurgaPB;
for (unsigned int u(0); u<10 ; u++) {
parForBofZ[par_vec.size()-3] = par_vec[4] + double(u)*5.;
TLondon1D_HS *BofZ = new TLondon1D_HS(parForBofZ);
TPofBCalc *PofB = new TPofBCalc(*BofZ, calcData, parForPofB);
if(u == 0){
hurgaB = PofB->DataB();
hurgaPB = PofB->DataPB();
PofB->ConvolveGss(7.0);
donk = PofB->DataPB();
}
delete BofZ;
delete PofB;
}
// TPofBCalc sumPB(hurgaB, zonk);
// sumPB.AddBackground(par_vec[2], 0.15, 0.1);
// sumPB.ConvolveGss(7.0);
// donk = sumPB.DataPB();
char debugfile[50];
int n = sprintf (debugfile, "testInverseExp-BpB_B-%.4f_l-%.3f_E-%.1f_normal.dat", par_vec[2], par_vec[4], par_vec[1]);
if (n > 0) {
ofstream of7(debugfile);
for (unsigned int i(0); i<hurgaB.size(); i++) {
of7 << hurgaB[i] << " " << donk[i] << " " << hurgaPB[i] << endl;
}
of7.close();
}
*/
// vector<double> parForPofT;
// parForPofT.push_back(par_vec[0]); //phase
// parForPofT.push_back(0.01); //dt
// parForPofT.push_back(0.02); //dB
// TLondon1D_HS BofZ(parForBofZ);
// vector<double> zz;
// vector<double> Bz;
// for(double i(0.5); i<2001; i+=1.0) {
// zz.push_back(i/10.0);
// if(!(i/10.0 < parForBofZ[1])) {
// Bz.push_back(BofZ.GetBofZ(i/10.0));
// }
// else {
// Bz.push_back(parForBofZ[0]);
// }
// }
/*
char debugfile1[50];
int nn = sprintf (debugfile1, "testInverseExp-Bz_z-%.4f_l-%.3f_E-%.1f_normal.dat", par_vec[2], par_vec[9], par_vec[1]);
if (nn > 0) {
ofstream of01(debugfile1);
for (unsigned int i(0); i<2000; i++) {
of01 << zz[i] << " " << Bz[i] << endl;
}
of01.close();
}
*/
// TPofBCalc PofB(BofZ, calcData, parForPofB);
// double t1(0.0);
// get start time
// struct timeval tv_start, tv_stop;
// gettimeofday(&tv_start, 0);
//
// TPofBCalc PofB(BofZ, calcData, parForPofB);
//
// gettimeofday(&tv_stop, 0);
// t1 = (tv_stop.tv_sec - tv_start.tv_sec)*1000.0 + (tv_stop.tv_usec - tv_start.tv_usec)/1000.0;
// cout << "p(B) calculation time with derivatives of the inverse function: " << t1 << " ms" << endl;
// gettimeofday(&tv_start, 0);
//
// BofZ.Calculate();
// TPofBCalc PofB1(BofZ, calcData, parForPofB, 1);
//
// gettimeofday(&tv_stop, 0);
// t1 = (tv_stop.tv_sec - tv_start.tv_sec)*1000.0 + (tv_stop.tv_usec - tv_start.tv_usec)/1000.0;
//
// cout << "p(B) calculation time without derivatives of the inverse function: " << t1 << " ms" << endl;
// PofB.ConvolveGss(1.17);
// PofB.AddBackground(par_vec[2], 0.2, calcData.LayerFraction(E, 4, interfaces));
// PofB.ConvolveGss(1.17);
// vector<double> hurgaB(PofB.DataB());
// vector<double> hurgaPB(PofB.DataPB());
// vector<double> hurgaPB1(PofB1.DataPB());
//
// char debugfile[50];
// int n = sprintf (debugfile, "testInverseExp-BpB_B-%.4f_l-%.3f_E-%.1f_normal.dat", par_vec[2], par_vec[4], par_vec[1]);
//
// if (n > 0) {
// ofstream of7(debugfile);
// for (unsigned int i(0); i<hurgaB.size(); i++) {
// of7 << hurgaB[i] << " " << hurgaPB[i] << " " << hurgaPB1[i] << endl;
// }
// of7.close();
// }
// TPofTCalc poft("/home/l_wojek/analysis/WordsOfWisdom.dat", parForPofT);
//
// poft.DoFFT(PofB);
// poft.CalcPol(parForPofT);
//
// char debugfilex[50];
// int nx = sprintf (debugfilex, "4Ltest-P_t-%.4f_l-%.3f_E-%.1f_normal.dat", par_vec[2], par_vec[9], par_vec[1]);
//
// if (nx > 0) {
// ofstream of8(debugfilex);
// for (double i(0.); i<12.0; i+=0.003) {
// of8 << i << " " << poft.Eval(i) << endl;
// }
// of8.close();
// }
/*
PofB.ConvolveGss(8.8);
vector<double> hurgaB1(PofB.DataB());
vector<double> hurgaPB1(PofB.DataPB());
n = sprintf (debugfile, "BpB_B-%.4f_l-%.3f_E-%.1f_broadend8.8G.dat", par_vec[2], par_vec[4], par_vec[1]);
if (n > 0) {
ofstream of1(debugfile);
for (unsigned int i(0); i<hurgaB1.size(); i++) {
of1 << hurgaB1[i] << " " << hurgaPB1[i] << endl;
}
of1.close();
}
calcData.ConvolveGss(10.0, par_vec[1]);
calcData.Normalize(par_vec[1]);
TPofBCalc PofB2(BofZ, calcData, parForPofB);
vector<double> z2(calcData.DataZ(par_vec[1]));
vector<double> nz2(calcData.DataNZ(par_vec[1]));
ofstream of2("Implantation-profile-broad.dat");
for (unsigned int i(0); i<z2.size(); i++) {
of2 << z2[i] << " " << nz2[i] << endl;
}
of2.close();
vector<double> hurgaB2(PofB2.DataB());
vector<double> hurgaPB2(PofB2.DataPB());
n = sprintf (debugfile, "BpB_B-%.4f_l-%.3f_E-%.1f_broadend10nm.dat", par_vec[2], par_vec[4], par_vec[1]);
if (n>0) {
ofstream of8(debugfile);
for (unsigned int i(0); i<hurgaB2.size(); i++) {
of8 << hurgaB2[i] << " " << hurgaPB2[i] << endl;
}
of8.close();
}
PofB2.ConvolveGss(7.5);
vector<double> hurgaB3(PofB2.DataB());
vector<double> hurgaPB3(PofB2.DataPB());
n = sprintf (debugfile, "BpB_B-%.4f_l-%.3f_E-%.1f_broadend10nm+7.5G.dat", par_vec[2], par_vec[4], par_vec[1]);
if (n > 0) {
ofstream of9(debugfile);
for (unsigned int i(0); i<hurgaB3.size(); i++) {
of9 << hurgaB3[i] << " " << hurgaPB3[i] << endl;
}
of9.close();
}
z.clear();
nz.clear();
z2.clear();
nz2.clear();
*/
/*
double param[8] = {100.0, 5.0, 50.0, 100.0, 40.0, 0.01, 0.1, 15.0};
vector<double> parameter(param,param+8);
vector<double> param_for_BofZ;
vector<double> param_for_PofB;
vector<double> param_for_PofT;
for (unsigned int i(0); i<4; i++)
param_for_BofZ.push_back(parameter[i]);
for (unsigned int i(5); i<8; i++)
param_for_PofB.push_back(parameter[i]);
for (unsigned int i(4); i<7; i++)
param_for_PofT.push_back(parameter[i]);
TLondon1D_1L bofz(param_for_BofZ);
cout << "Bmin = " << bofz.GetBmin() << endl;
cout << "Bmax = " << bofz.GetBmax() << endl;
cout << "dZ = " << bofz.GetdZ() << endl;
ofstream of5("test_Bz.dat");
for (double i(0); i<50.; i+=0.1) {
of5 << i << " " << bofz.GetBofZ(i) << endl;
}
of5.close();
ofstream of6("test_zBz.dat");
for (unsigned int i(0); i<bofz.DataZ().size(); i++) {
of6 << bofz.DataZ()[i] << " " << bofz.DataBZ()[i] << endl;
}
of6.close();
TPofBCalc pofb(bofz, calcData, param_for_PofB);
cout << "Output to file now..." << endl;
vector<double> hurgaB(pofb.DataB());
vector<double> hurgaPB(pofb.DataPB());
ofstream of7("test_BpB.dat");
for (unsigned int i(0); i<hurgaB.size(); i++) {
of7 << hurgaB[i] << " " << hurgaPB[i] << endl;
}
of7.close();
TPofTCalc poft(param_for_PofT);
poft.DoFFT(pofb, param_for_PofT);
ofstream of8("test_tpt4.dat");
for (double i(0.); i<12.0; i+=0.003) {
of8 << i << " " << poft(i) << endl;
}
of8.close();
*/
/**************** Test TLondon1DHS *********************************
// unsigned int parNo_arr[] = {1, 2, 5, 7, 9, 10, 11, 12};
double par_arr[] = {24.4974, 22.0, 95.8253, 7.62096, 143.215};
// vector<unsigned int> parNo_vec(parNo_arr, parNo_arr+(sizeof(parNo_arr)/sizeof(parNo_arr[0])));
vector<double> par_vec(par_arr, par_arr+(sizeof(par_arr)/sizeof(par_arr[0])));
// vector<double> par_vec_sub;
// for(unsigned int i(0); i<parNo_vec.size(); i++) {
// par_vec_sub.push_back(par_vec[parNo_vec[i]-1]);
// }
TLondon1DHS fitter;
************************************************************************/
/**************** Test TLondon1D1L *********************************
unsigned int parNo_arr[] = {1, 3, 5, 7, 9, 10, 11, 12};
double par_arr[] = {0.0, 999.0, 0.01, 999.0, 0.01, 999.0, 4.6, 999.0, 100.0, 5.0, 190.0, 180.0};
vector<unsigned int> parNo_vec(parNo_arr, parNo_arr+(sizeof(parNo_arr)/sizeof(parNo_arr[0])));
vector<double> par_vec(par_arr, par_arr+(sizeof(par_arr)/sizeof(par_arr[0])));
vector<double> par_vec_sub;
for(unsigned int i(0); i<parNo_vec.size(); i++) {
par_vec_sub.push_back(par_vec[parNo_vec[i]-1]);
}
TLondon1D1L fitter(parNo_vec, par_vec);
************************************************************************/
/**************** Test TLondon1D2L **********************************
unsigned int parNo_arr[] = {1, 3, 5, 7, 9, 10, 11, 12, 13, 14, 15, 16};
double par_arr[] = {0.0, 999.0, 0.01, 999.0, 0.01, 999.0, 21.6, 999.0, 100.0, 5.0, 70.0, 70.0, 180.0, 500.0, 1.0, 0.3};
vector<unsigned int> parNo_vec(parNo_arr, parNo_arr+(sizeof(parNo_arr)/sizeof(parNo_arr[0])));
vector<double> par_vec(par_arr, par_arr+(sizeof(par_arr)/sizeof(par_arr[0])));
vector<double> par_vec_sub;
for(unsigned int i(0); i<parNo_vec.size(); i++) {
par_vec_sub.push_back(par_vec[parNo_vec[i]-1]);
}
TLondon1D2L fitter(parNo_vec, par_vec);
************************************************************************/
/**************** Test TLondon1D3L ********************************
unsigned int parNo_arr[] = {1, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19};
double par_arr[] = {0.0, 999.0, 0.01, 999.0, 0.01, 999.0, 4.6, 999.0, 100.0, 5.0, 70.0, 50.0, 70.0, 180.0, 180.0, 180.0, 1.0, 1.0, 1.0};
vector<unsigned int> parNo_vec(parNo_arr, parNo_arr+(sizeof(parNo_arr)/sizeof(parNo_arr[0])));
vector<double> par_vec(par_arr, par_arr+(sizeof(par_arr)/sizeof(par_arr[0])));
vector<double> par_vec_sub;
for(unsigned int i(0); i<parNo_vec.size(); i++) {
par_vec_sub.push_back(par_vec[parNo_vec[i]-1]);
}
TLondon1D3L fitter(parNo_vec, par_vec);
************************************************************************/
/**************** Test TLondon1D3LS *********************************
unsigned int parNo_arr[] = {1, 3, 5, 7, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18};
double par_arr[] = {0.0, 999.0, 0.01, 999.0, 0.01, 999.0, 21.6, 999.0, 100.0, 5.0, 70.0, 50.0, 70.0, 180.0, 500.0, 1.0, 0.3, 1.0};
vector<unsigned int> parNo_vec(parNo_arr, parNo_arr+(sizeof(parNo_arr)/sizeof(parNo_arr[0])));
vector<double> par_vec(par_arr, par_arr+(sizeof(par_arr)/sizeof(par_arr[0])));
vector<double> par_vec_sub;
for(unsigned int i(0); i<parNo_vec.size(); i++) {
par_vec_sub.push_back(par_vec[parNo_vec[i]-1]);
}
TLondon1D3LS fitter(parNo_vec, par_vec);
************************************************************************/
// ofstream of01("test_fitter01.dat");
// ofstream of02("test_fitter02.dat");
// ofstream of03("test_fitter03.dat");
// ofstream of04("test_fitter04.dat");
// ofstream of05("test_fitter05.dat");
// ofstream of06("test_fitter06.dat");
// ofstream of07("test_fitter07.dat");
// ofstream of08("test_fitter08.dat");
// ofstream of09("test_fitter09.dat");
// ofstream of10("test_fitter10.dat");
// for (double i(0.); i<12.0; i+=0.003) {
// of01 << i << " " << fitter(i, par_vec) << endl;
// }
// of01.close();
// par_vec[1] = 7.7;
//
// for (double i(0.); i<12.0; i+=0.003) {
// of02 << i << " " << fitter(i, par_vec) << endl;
// }
// of02.close();
//
// par_vec[0] = 0.0;
//
// for (double i(0.); i<12.0; i+=0.003) {
// of03 << i << " " << fitter(i, par_vec) << endl;
// }
// of03.close();
//
// par_vec[2] = 200.0;
//
// for (double i(0.); i<12.0; i+=0.003) {
// of04 << i << " " << fitter(i, par_vec) << endl;
// }
// of04.close();
//
// par_vec[4] = 100.0;
//
// for (double i(0.); i<12.0; i+=0.003) {
// of05 << i << " " << fitter(i, par_vec) << endl;
// }
// of05.close();
//
// par_vec[0] = 20.0;
// par_vec[1] = 24.6;
// par_vec[2] = 96.5;
// par_vec[3] = 15.0;
// par_vec[4] = 130.0;
//
// for (double i(0.); i<12.0; i+=0.003) {
// of06 << i << " " << fitter(i, par_vec) << endl;
// }
// of06.close();
//
// par_vec[0] = 20.0;
// par_vec[1] = 24.6;
// par_vec[2] = 96.5;
// par_vec[3] = 15.0;
// par_vec[4] = 140.0;
//
// for (double i(0.); i<12.0; i+=0.003) {
// of07 << i << " " << fitter(i, par_vec) << endl;
// }
// of07.close();
//
// par_vec[0] = 20.0;
// par_vec[1] = 24.6;
// par_vec[2] = 96.5;
// par_vec[3] = 20.0;
// par_vec[4] = 130.0;
//
// for (double i(0.); i<12.0; i+=0.003) {
// of08 << i << " " << fitter(i, par_vec) << endl;
// }
// of08.close();
/*
par_vec_sub[0] = 0.0;
par_vec_sub[7] = 1000.0;
for (double i(0.); i<12.0; i+=0.003) {
of09 << i << " " << fitter.Eval(i, par_vec_sub) << endl;
}
of09.close();
par_vec_sub[0] = 0.0;
par_vec_sub[7] = 10.0;
for (double i(0.); i<12.0; i+=0.003) {
of10 << i << " " << fitter.Eval(i, par_vec_sub) << endl;
}
of10.close();
*/
/*
vector<double> data01, data02, data03, data04, data05, data06, data07, data08, data09, data10;
for (double i(0.); i<12.0; i+=0.003)
data01.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
par_vec_sub[10] -= 10.0;
for (double i(0.); i<12.0; i+=0.003)
data02.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
par_vec_sub[10] -= 10.0;
for (double i(0.); i<12.0; i+=0.003)
data03.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
for (double i(0.); i<12.0; i+=0.003)
data04.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
par_vec_sub[10] -= 10.0;
for (double i(0.); i<12.0; i+=0.003)
data05.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
par_vec_sub[10] -= 10.0;
for (double i(0.); i<12.0; i+=0.003)
data06.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
for (double i(0.); i<12.0; i+=0.003)
data07.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
par_vec_sub[10] = 190.0;
for (double i(0.); i<12.0; i+=0.003)
data08.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
par_vec_sub[10] -= 10.0;
for (double i(0.); i<12.0; i+=0.003)
data09.push_back(fitter.Eval(i, par_vec_sub));
par_vec_sub[0] += 10.0;
for (double i(0.); i<12.0; i+=0.003)
data10.push_back(fitter.Eval(i, par_vec_sub));
*/
// par_vec.clear();
return 0;
}