Docu updated
Removed the automake tool chain description (hopefully) everywhere.
This commit is contained in:
parent
dbfeeddf3f
commit
86d03d7132
@ -1,4 +1,4 @@
|
||||
# Sphinx build info version 1
|
||||
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
|
||||
config: 5c197f7d1a99bc4d9f1831306e12cc04
|
||||
config: 39df8dc76b5eba2fef9a1560a07e9143
|
||||
tags: 645f666f9bcd5a90fca523b33c5a78b7
|
||||
|
||||
@ -149,46 +149,6 @@ switch the working branch which is done by
|
||||
$ cd $HOME/Apps/musrfit
|
||||
$ git checkout dks6
|
||||
|
||||
Install via automake
|
||||
^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
.. note::
|
||||
|
||||
Currently ``automake`` is still supported but soon will be replaced by ``cmake``. Only follow
|
||||
the ``automake`` procedure if you have good reasons.
|
||||
|
||||
The configure script for musrfit has now a couple of more tags/options, which are:
|
||||
|
||||
**- -enable-dks**
|
||||
by default this is set to no, hence if you want to have GPU support you need to enable it.
|
||||
**- -with-cuda**
|
||||
with this tag you tell the configure script where it can find ``CUDA``
|
||||
**- -with-opencl**
|
||||
with this tag you tell the configure script where it can find ``OpenCL``
|
||||
**- -with-dks**
|
||||
with this tag you tell the configure script where it can find ``DKS``
|
||||
|
||||
For a typical setup on a RHEL system it could look like this
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ ./configure --enable-ASlibs --enable-BMWlibs --enable-NeXus --with-dks=$HOME/Apps/DKS/exec --enable-dks --prefix=$ROOTSYS
|
||||
|
||||
After
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ make
|
||||
$ make install
|
||||
|
||||
and updating the shared library lookup table (*only* needed for Linux)
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ /sbin/ldconfig # as superuser / root
|
||||
|
||||
you are done with the setup.
|
||||
|
||||
Install via cmake
|
||||
^^^^^^^^^^^^^^^^^
|
||||
|
||||
@ -201,7 +161,7 @@ For a typical setup on a RHEL or macOS system it could look like this
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ cmake ../ -DCMAKE_INSTALL_PREFIX=$ROOTSYS -DASlibs=1 -DBMWlibs=1 -Dnexus=1
|
||||
$ cmake ../ -DCMAKE_INSTALL_PREFIX=$ROOTSYS -DASlibs=1 -DBMWlibs=1 -Dnexus=1 -Ddks=1
|
||||
|
||||
After
|
||||
|
||||
|
||||
@ -23,11 +23,9 @@ it can also be set up under **MS Windows** (cygwin, only for the *very brave*, p
|
||||
In case musrfit should be installed according to the description found on this page, the user is strongly encouraged to *read completely* each section dealing with the
|
||||
present installation step *before* starting the installation process!
|
||||
|
||||
Apart from `GCC, the GNU Compiler Collection <http://gcc.gnu.org/>`_ (``gcc``, ``g++``), the GNU build tools `autoconf <http://www.gnu.org/software/autoconf/>`_,
|
||||
`automake <http://www.gnu.org/software/automake/>`_, and `libtool <http://www.gnu.org/software/libtool/>`_ are needed, if you want to build musrfit via the automake toolchain.
|
||||
The ``automake`` toolchain will eventually be droped in upcoming releases.
|
||||
If you plan to use the cmake toolchain (preferred way), `cmake <https://cmake.org/>`_. Furthermore the helper tool `pkg-config <http://pkg-config.freedesktop.org/wiki/>`_ is
|
||||
needed and musrfit requires the installation of a few open-source libraries and programs including their header packages:
|
||||
Apart from `GCC, the GNU Compiler Collection <http://gcc.gnu.org/>`_ (``gcc``, ``g++``), the build tool `cmake <https://cmake.org/>`_ is needed. Furthermore the helper
|
||||
tool `pkg-config <http://pkg-config.freedesktop.org/wiki/>`_ needs to be in place, and musrfit requires the installation of a few open-source libraries and programs including
|
||||
their header packages:
|
||||
|
||||
.. index:: boost-c++
|
||||
|
||||
@ -94,14 +92,15 @@ Before the installation procedure will be described, please note the following r
|
||||
|
||||
**GNU/Linux**
|
||||
No serious problems are currently known. Tested distributions: `RHEL <https://www.redhat.com/de/technologies/linux-platforms/enterprise-linux>`_, `Fedora <https://getfedora.org/>`_,
|
||||
`Debian <https://www.debian.org/>`_, `Ubuntu <https://www.ubuntu.com/>`_, `Mint <https://linuxmint.com/>`_, `openSUSE <https://en.opensuse.org/Main_Page>`_.
|
||||
`Debian <https://www.debian.org/>`_, `Ubuntu <https://www.ubuntu.com/>`_, `Mint <https://linuxmint.com/>`_, `openSUSE <https://en.opensuse.org/Main_Page>`_,
|
||||
`manjaro <https://de.manjaro.org/>`_, and `antergos <https://antergos.com/>`_.
|
||||
**Mac OS X/macOS**
|
||||
No serious problems are currently known for macOS ≥ 10.6.
|
||||
**MS Windows**
|
||||
Native *MS Windows* support is currently not available. Potential ways to get ``musrfit`` running are:
|
||||
|
||||
* via installation of Linux via the Microsoft App store for Windows 10.
|
||||
* via installation of the virtual machine on which you install Linux.
|
||||
* via installation of the virtual machine on which you install Linux (probably the easiest for most Windows users).
|
||||
* via `cygwin`_.
|
||||
|
||||
.. _cygwin: https://www.cygwin.com/
|
||||
@ -173,9 +172,18 @@ Installation of NeXus requirements (optional)
|
||||
|
||||
*Only* if ``musrfit`` should support reading/writing data files in the ``NeXus`` format the further required
|
||||
software has to be set up. The required libraries and header files could either be available through the user's
|
||||
GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. *E.g.* on
|
||||
Red Hat-like systems binary packages for ``MXML``, ``HDF4``, and ``HDF5`` might be called ``mxml``, ``mxml-devel``,
|
||||
``hdf``, ``hdf-devel``, ``hdf5``, ``hdf5-devel``, on Debian-like systems ``libmxml1``, ``libmxml-dev``, ``libhdf4-dev``, ``libhdf5-dev``.
|
||||
GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. The necessary
|
||||
packages to build ``NeXus`` are ``MXML``, (``HDF4``), and ``HDF5``. This means, for a rpm-package based distro try something like:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ yum install mxml-devel hdf-devel hdf5-devel
|
||||
|
||||
and on a deb-package based distro try something like:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ apt-get install libmxml-dev libhdf4-dev libhdf5-dev
|
||||
|
||||
.. note::
|
||||
|
||||
@ -213,10 +221,8 @@ A brief instruction how to get ``NeXus`` compiled from source (lines starting wi
|
||||
ROOT
|
||||
^^^^
|
||||
|
||||
ROOT 5.34/xx is supported as legacy version *only*! **The default now will be ROOT 6.xx/yy!**
|
||||
|
||||
The ROOT framework may or may not be part of the GNU/Linux distribution. Some distributions are packing ROOT in a
|
||||
manner incompatible with the way it is needed for ``musrfit``, though the situation is improving. If you are
|
||||
manner incompatible with the way it is needed by ``musrfit``, though the situation is improving. If you are
|
||||
experienced enough you can try the packed ROOT version. Often ROOT is split in many sub-packages. Install the
|
||||
necessary ones (guess from the description below). **One Warning:** if the ROOT packages are upgraded after a
|
||||
yum update (apt-get update; apt-get upgrade) you might need to recompile ``musrfit``. *If you are not sure about
|
||||
@ -247,12 +253,12 @@ be added starting with a '#' which can be omitted. They are only there to explai
|
||||
$ # creat the Apps directory if not already present
|
||||
$ mkdir Apps
|
||||
$ cd Apps
|
||||
$ git clone http://root.cern.ch/git/root.git
|
||||
$ git clone http://github.com/root-project/root.git
|
||||
$ cd root
|
||||
$ git tag -l
|
||||
$ # git tag -l will list all available tags. In the next command choose the tag v6-14-00
|
||||
$ # git tag -l will list all available tags. In the next command choose the tag v6-16-00
|
||||
$ # or the latest official release number
|
||||
$ git checkout -b v6-14-00 v6-14-00
|
||||
$ git checkout -b v6-16-00 v6-16-00
|
||||
$ # now ROOT is ready to be configured. Below you will find the minimal ROOT configuration needed.
|
||||
$ # since we are using cmake build now, first we will need to create the build directory.
|
||||
$ mkdir root_build
|
||||
@ -299,7 +305,7 @@ If an update of ROOT is needed, simple do the following:
|
||||
musrfit
|
||||
+++++++
|
||||
|
||||
When all required software has been set up with the ``musrfit`` installation can be proceeded. First, the most
|
||||
When all required software has been set up you can proceed with the ``musrfit`` installatio. First, the most
|
||||
recent source code should be downloaded. The preferred way of doing so is to clone the ``musrfit`` repository via git.
|
||||
Assuming the code should be located in ``$HOME/Apps`` this is achieved most easily calling from the terminal
|
||||
|
||||
@ -307,8 +313,7 @@ Assuming the code should be located in ``$HOME/Apps`` this is achieved most easi
|
||||
|
||||
$ cd $HOME/Apps
|
||||
$ git clone https://bitbucket.org/muonspin/musrfit.git
|
||||
$ # Only if legacy ROOT 5.xx.yy is used include the next line
|
||||
$ cd musrfit; git checkout root5
|
||||
$ cd musrfit
|
||||
|
||||
or
|
||||
|
||||
@ -316,8 +321,7 @@ or
|
||||
|
||||
$ cd $HOME/Apps
|
||||
$ git clone git://gitlab.psi.ch/nemu/musrfit.git
|
||||
$ # Only if legacy ROOT 5.xx.yy is used include the next line
|
||||
$ cd musrfit; git checkout root5
|
||||
$ cd musrfit
|
||||
|
||||
.. note::
|
||||
|
||||
@ -331,24 +335,6 @@ or
|
||||
|
||||
$ cd $HOME/Apps/musrfit
|
||||
$ git pull
|
||||
|
||||
Now, depending whether you follow the ``automake`` or ``cmake`` tool chain you do
|
||||
|
||||
**automake toolchain:**
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ make uninstall
|
||||
$ make clean
|
||||
$ make
|
||||
$ make install
|
||||
|
||||
or
|
||||
|
||||
**cmake toolchain:**
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd build
|
||||
$ xargs rm < install_manifest.txt
|
||||
$ cmake --build ./ --clean-first
|
||||
@ -358,61 +344,6 @@ or
|
||||
|
||||
As an alternative (if git is not available), the source code can also be downloaded from the following web-page: `musrfit at bitbucket`_
|
||||
|
||||
.. index:: musrfit-build-automake-linux
|
||||
|
||||
musrfit build with automake
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
After the source-code extraction the ``autogen.sh`` script is called to prepare the build environment.
|
||||
If it has been executed successfully the ``configure`` script should be ready to collect all the information needed
|
||||
to create the Makefiles. If ``musrfit`` should support ``NeXus`` data files this has to be enabled by specifying the
|
||||
``--enable-NeXus`` switch when calling configure. For an overview of all available options just call ``./configure --help``.
|
||||
Besides the standard options there are a few special options which should be mentioned here:
|
||||
|
||||
**- -prefix**
|
||||
Specify the installation prefix, *e.g.* ``$ROOTSYS`` if already defined (by default: ``/usr/local``).
|
||||
**- -with-rootsys**
|
||||
Specify the top of the ``ROOT`` installation directory, *e.g.* ``$ROOTSYS`` if already defined.
|
||||
**- -with-fftw3**
|
||||
Specify the prefix of the ``FFTW3`` installation. *e.g.* ``/usr/local`` or ``/usr``.
|
||||
**- -with-gsl**
|
||||
Set the prefix of the ``GSL`` installation, *e.g.* ``/usr/local`` or ``/usr``.
|
||||
**- -with-boostinc**
|
||||
Set the path to the header files of the ``Boost`` installation, *e.g.* ``/usr/local/include`` or ``/usr/include``.
|
||||
**- -with-hdf4**
|
||||
Set the prefix of the ``HDF4`` installation, *e.g.* ``/usr/local`` (only useful in conjunction with the ``NeXus`` support).
|
||||
**- -with-hdf5**
|
||||
Set the prefix of the ``HDF5`` installation, *e.g.* ``/usr`` (only useful in conjunction with the ``NeXus`` support).
|
||||
**- -with-nexus**
|
||||
Set the prefix of the ``NeXus`` installation, *e.g.* ``/usr/local`` (only useful in conjunction with the ``NeXus`` support).
|
||||
**- -with-qt3**
|
||||
Set the prefix of the ``Qt3`` installation, *e.g.* ``/usr/lib/qt-3.3`` (only useful in conjunction with building ``musrgui``).
|
||||
**- -with-qt4**
|
||||
Set the prefix of the ``Qt4`` installation, *e.g.* ``/usr/lib/qt47`` (only useful in conjunction with building ``musredit``).
|
||||
**- -with-qt5**
|
||||
Set the prefix of the ``Qt5`` installation, *e.g.* ``/usr/lib64`` (only useful in conjunction with building ``musredit``).
|
||||
**- -enable-NeXus**
|
||||
Enable the support of ``NeXus`` data files (requires the ``HDF4``, ``HDF5`` and ``NeXus`` libraries to be installed).
|
||||
**- -disable-editor**
|
||||
Disable the integrated building of ``musredit``/``musrgui``.
|
||||
**- -disable-omp**
|
||||
Switches off the `OpenMP <http://en.wikipedia.org/wiki/OpenMP>`_ features of ``musrfit`` (parallelization of the :math:`\chi^2` calculation when compiled with GCC ≥ 4.2).
|
||||
|
||||
Normally it should not be necessary to make use of any of the options except for specifying the installation path with ``--prefix``. The
|
||||
other paths should be detected automatically. If this does not work for some reason the configure script will terminate and ask for the
|
||||
information. When the configure script has been called successfully everything is ready for building the ``musrfit`` libraries and executables.
|
||||
A standard installation sequence (without ``NeXus`` support) might then look like (In case the normal user has no write permissions to the
|
||||
``$ROOTSYS`` and the installation path the "make install" commands have to be executed as superuser.):
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd $HOME/Apps/musrfit
|
||||
$ sh autogen.sh
|
||||
$ ./configure --prefix=$ROOTSYS
|
||||
$ make
|
||||
$ make install
|
||||
$ /sbin/ldconfig # (as superuser)
|
||||
|
||||
.. index:: musrfit-build-cmake-linux
|
||||
|
||||
musrfit build with cmake
|
||||
@ -484,8 +415,7 @@ musredit
|
||||
++++++++
|
||||
|
||||
In the latest version of ``musrfit`` the configure script tries to determine automatically the highest available ``Qt`` version.
|
||||
In case this is found, the editor ``musredit`` is built already together with ``musrfit``. If not, one can try to call
|
||||
the configure script with the **- -with-qt5** option (``automake``). ``cmake`` will determine everthing automatically.
|
||||
In case this is found, the editor ``musredit`` is built already together with ``musrfit``.
|
||||
To install this editor separately, *i.e.* by "hand" do
|
||||
|
||||
.. code-block:: bash
|
||||
@ -740,60 +670,6 @@ If the repository had been checked out already before, one can update the local
|
||||
As an alternative (if git is not available), the source code can also be downloaded from the following
|
||||
web-page: `musrfit at bitbucket`_.
|
||||
|
||||
.. index:: musrfit-build-automake-windows
|
||||
|
||||
musrfit build with automake
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
After the source-code extraction the ``autogen.sh`` script is called to prepare the build environment.
|
||||
If it has been executed successfully the ``configure`` script should be ready to collect all the information
|
||||
needed to create the Makefiles. If ``musrfit`` should support ``NeXus`` data files this has to be enabled by
|
||||
specifying the ``--enable-static --enable-NeXus`` switches when calling configure. For an overview of all
|
||||
available options just call ``./configure --help``. Besides the standard options there are a few special
|
||||
options which should be mentioned here:
|
||||
|
||||
**- -prefix**
|
||||
Specify the installation prefix, *e.g.* ``/opt/root-system`` (by default: ``/usr/local``)
|
||||
**- -with-rootsys**
|
||||
Specify the top of the ``ROOT`` installation directory, *e.g.* ``/opt/root-system``
|
||||
**- -with-fftw3**
|
||||
Specify the prefix of the ``FFTW3`` installation. *e.g.* ``/usr/local`` or ``/usr``
|
||||
**- -with-gsl**
|
||||
Set the prefix of the ``GSL`` installation, *e.g.* ``/usr/local`` or ``/usr``
|
||||
**- -with-boostinc**
|
||||
Set the path to the header files of the ``Boost`` installation, *e.g.* ``/usr/local/include`` or ``/usr/include``
|
||||
**- -with-hdf4**
|
||||
Set the prefix of the ``HDF4`` installation, *e.g.* ``/usr/local`` (only useful in conjunction with the ``NeXus`` support)
|
||||
**- -with-hdf5**
|
||||
Set the prefix of the ``HDF5`` installation, *e.g.* ``/usr`` (only useful in conjunction with the ``NeXus`` support)
|
||||
**- -with-nexus**
|
||||
Set the prefix of the ``NeXus`` installation, *e.g.* ``/usr/local`` (only useful in conjunction with the ``NeXus`` support)
|
||||
**- -with-qt3**
|
||||
Set the prefix of the ``Qt3`` installation, *e.g.* ``/usr/lib/qt-3.3`` (only useful in conjunction with building ``musrgui``)
|
||||
**- -with-qt4**
|
||||
Set the prefix of the ``Qt4`` installation, *e.g.* ``/usr/lib/qt47`` (only useful in conjunction with building ``musredit``)
|
||||
**- -with-qt5**
|
||||
Set the prefix of the ``Qt5`` installation, *e.g.* ``/usr/lib/qt56`` (only useful in conjunction with building ``musredit``)
|
||||
**- -enable-NeXus**
|
||||
Enable the support of ``NeXus`` data files (requires the ``HDF4``, ``HDF5`` and ``NeXus`` libraries to be installed).
|
||||
**- -disable-editor**
|
||||
Disable the integrated building of ``musredit``/``musrgui``.
|
||||
**- -disable-omp**
|
||||
Switches off the ``OpenMP`` features of ``musrfit`` (parallelization of the :math:`\chi^2` calculation when compiled with ``GCC`` ≥ 4.2)
|
||||
|
||||
Normally it should not be necessary to make use of any of the options except for specifying the installation path with ``--prefix``.
|
||||
The other paths should be detected automatically. If this does not work for some reason the ``configure`` script will terminate and
|
||||
ask for the information. When the ``configure`` script has been called successfully everything is ready for building the ``musrfit``
|
||||
libraries and executables. A standard installation sequence (without ``NeXus`` support) might then look like:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd musrfit
|
||||
$ sh autogen.sh
|
||||
$ ./configure --prefix=$ROOTSYS
|
||||
$ make
|
||||
$ make install
|
||||
|
||||
.. index:: musrfit-build-cmake-windows
|
||||
|
||||
musrfit build with cmake
|
||||
@ -847,8 +723,7 @@ musredit
|
||||
|
||||
In the latest version of ``musrfit`` the configure script tries to determine automatically if
|
||||
Qt4.5 or higher is set up on the machine. In case this is found, the editor ``musredit`` is built
|
||||
readily with ``musrfit``. If not, one can either try to call the ``configure`` script with the
|
||||
``--with-qt4`` option or install this editor separately, *.e.g.*:
|
||||
readily with ``musrfit``. If not, try the following:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
@ -945,7 +820,7 @@ with OS X (on the installation DVD/CDs) should be installed:
|
||||
|
||||
**X11**
|
||||
The X-window system is automatically installed on 10.5 Leopard and 10.6 Snow Leopard. For some other versions you also
|
||||
will need to install `XQuartz <http://xquartz.macosforge.org/trac>`. If ``ROOT`` runs without ``XQuartz`` *do not*
|
||||
will need to install `XQuartz <http://xquartz.macosforge.org/trac>`_. If ``ROOT`` runs without ``XQuartz`` *do not*
|
||||
install it.
|
||||
|
||||
After installing the ``Xcode`` tools go to the `MacPorts install page <http://www.macports.org/install.php>`_, download
|
||||
@ -1034,7 +909,7 @@ Only ``NeXus`` Version ≥ 4.4 is support!) this can be achieved for example by:
|
||||
ROOT
|
||||
^^^^
|
||||
|
||||
ROOT 5.34/xx is supported as legacy version only! **The default now will be ROOT 6.xx/yy!**
|
||||
**The default ROOT version is based on ROOT 6.xx/yy!**
|
||||
|
||||
ROOT installed via package installer
|
||||
""""""""""""""""""""""""""""""""""""
|
||||
@ -1042,16 +917,16 @@ ROOT installed via package installer
|
||||
The lazy way to get ``ROOT`` installed is via package installer. If your macOS is directly supported
|
||||
by the ``ROOT`` people you can download the package installer from the ``ROOT`` `download page <https://root.cern.ch/downloading-root>`_.
|
||||
Choose the latest ``ROOT`` release and download you macOS version dmg-file, *e.g.* for macOS 10.13 (High Sierra)
|
||||
it is at the time of writting ``root_v6.14.00.macosx64-10.13-clang91.dmg``. After the installation
|
||||
it is at the time of writting ``root_v6.16.00.macosx64-10.13-clang91.dmg``. After the installation
|
||||
``ROOT`` will be installed under ``/Application`` as owner root. In order to ease your life for the
|
||||
steps to follow and assuming you are the only guy working on your Mac, you could change the owner and group of the ``ROOT`` directory:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd /Applications
|
||||
$ sudo chown -R <username> root_v6.14.00
|
||||
$ sudo chgrp -R staff root_v6.14.00
|
||||
$ sudo ln -s root_v6.14.00 root
|
||||
$ sudo chown -R <username> root_v6.16.00
|
||||
$ sudo chgrp -R staff root_v6.16.00
|
||||
$ sudo ln -s root_v6.16.00 root
|
||||
|
||||
ROOT installed from source
|
||||
""""""""""""""""""""""""""
|
||||
@ -1068,12 +943,12 @@ comments will be added starting with a '#' which can be omitted. They are only t
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd $HOME/Applications
|
||||
$ git clone http://root.cern.ch/git/root.git
|
||||
$ git clone http://github.com/root-project/root.git
|
||||
$ cd root
|
||||
$ git tag -l
|
||||
$ # git tag -l will list all available tags. In the next command choose the tag v6-10-xx
|
||||
$ # where xx is the highest listed number, e.g. v6-14-00
|
||||
$ git checkout -b v6-14-00 v6-14-00
|
||||
$ # where xx is the highest listed number, e.g. v6-16-00
|
||||
$ git checkout -b v6-16-00 v6-16-00
|
||||
$ # now ROOT is ready to be configured. Below you will find the minimal ROOT configuration needed.
|
||||
$ # We will use the cmake out-of-source approach here.
|
||||
$ mkdir root_build
|
||||
@ -1158,7 +1033,7 @@ Before proceeding with the usage of the `Fink`_ system first a few useful tools
|
||||
|
||||
**X11**
|
||||
The X-window system is automatically installed on 10.5 Leopard and 10.6 Snow Leopard. For some other versions you also
|
||||
will need to install `XQuartz <http://xquartz.macosforge.org/trac>`. If ``ROOT`` runs without ``XQuartz`` *do not*
|
||||
will need to install `XQuartz <http://xquartz.macosforge.org/trac>`_. If ``ROOT`` runs without ``XQuartz`` *do not*
|
||||
install it.
|
||||
|
||||
After installing the ``Xcode`` tools go to the `Fink download page <http://www.finkproject.org/download/index.php?phpLang=en>`_,
|
||||
@ -1256,7 +1131,7 @@ this can be achieved for example by:
|
||||
ROOT
|
||||
^^^^
|
||||
|
||||
ROOT 5.34/xx is supported as legacy version only and will likely to be dropped in 2018. **The default now is ROOT 6.xx/yy!**
|
||||
**The default ROOT version is based on ROOT 6.xx/yy!**
|
||||
|
||||
ROOT installed via package installer
|
||||
""""""""""""""""""""""""""""""""""""
|
||||
@ -1264,16 +1139,16 @@ ROOT installed via package installer
|
||||
The lazy way to get ``ROOT`` installed is via package installer. If your macOS is directly supported
|
||||
by the ``ROOT`` people you can download the package installer from the ``ROOT`` `download page <https://root.cern.ch/downloading-root>`_.
|
||||
Choose the latest ``ROOT`` release and download you macOS version dmg-file, *e.g.* for macOS 10.13 (High Sierra)
|
||||
it is at the time of writting ``root_v6.14.00.macosx64-10.13-clang91.dmg``. After the installation
|
||||
it is at the time of writting ``root_v6.16.00.macosx64-10.13-clang91.dmg``. After the installation
|
||||
``ROOT`` will be installed under ``/Application`` as owner root. In order to ease your life for the
|
||||
steps to follow and assuming you are the only guy working on your Mac, you could change the owner and group of the ``ROOT`` directory:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd /Applications
|
||||
$ sudo chown -R <username> root_v6.14.00
|
||||
$ sudo chgrp -R staff root_v6.14.00
|
||||
$ sudo ln -s root_v6.14.00 root
|
||||
$ sudo chown -R <username> root_v6.16.00
|
||||
$ sudo chgrp -R staff root_v6.16.00
|
||||
$ sudo ln -s root_v6.16.00 root
|
||||
|
||||
ROOT installed from source
|
||||
""""""""""""""""""""""""""
|
||||
@ -1290,12 +1165,12 @@ comments will be added starting with a '#' which can be omitted. They are only t
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd $HOME/Applications
|
||||
$ git clone http://root.cern.ch/git/root.git
|
||||
$ git clone http://github.com/root-project/root.git
|
||||
$ cd root
|
||||
$ git tag -l
|
||||
$ # git tag -l will list all available tags. In the next command choose the tag v6-10-xx
|
||||
$ # where xx is the highest listed number, e.g. v6-14-00
|
||||
$ git checkout -b v6-14-00 v6-14-00
|
||||
$ # where xx is the highest listed number, e.g. v6-16-00
|
||||
$ git checkout -b v6-16-00 v6-16-00
|
||||
$ # now ROOT is ready to be configured. Below you will find the minimal ROOT configuration needed.
|
||||
$ # We will use the cmake out-of-source approach here.
|
||||
$ mkdir root_build
|
||||
@ -1374,8 +1249,7 @@ in ``~/Applications/musrfit`` this is achieved most easily calling from the term
|
||||
|
||||
$ cd ~/Applications
|
||||
$ git clone https://bitbucket.org/muonspin/musrfit.git
|
||||
$ # Only if legacy ROOT 5.xx.yy is used include the next line
|
||||
$ cd musrfit; git checkout root5
|
||||
$ cd musrfit
|
||||
|
||||
or
|
||||
|
||||
@ -1383,8 +1257,7 @@ or
|
||||
|
||||
$ cd ~/Applications
|
||||
$ git clone git://gitlab.psi.ch/nemu/musrfit.git
|
||||
$ # Only if legacy ROOT 5.xx.yy is used include the next line
|
||||
$ cd musrfit; git checkout root5
|
||||
$ cd musrfit
|
||||
|
||||
If a local repository clone is already present, one can update it using:
|
||||
|
||||
@ -1396,62 +1269,6 @@ If a local repository clone is already present, one can update it using:
|
||||
As an alternative (*if git is not available*), the source code can also be downloaded from the following
|
||||
web-page: `musrfit at bitbucket`_.
|
||||
|
||||
.. index:: musrfit-build-automake-macos
|
||||
|
||||
musrfit build with automake
|
||||
^^^^^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
After the source-code extraction the ``autogen.sh`` script is called to prepare the build environment.
|
||||
If it has been executed successfully the ``configure`` script should be ready to collect all the information needed
|
||||
to create the Makefiles. If ``musrfit`` should support ``NeXus`` data files this has to be enabled by specifying the
|
||||
``--enable-NeXus`` switch when calling configure. For an overview of all available options just call ``./configure --help``.
|
||||
Besides the standard options there are a few special options which should be mentioned here:
|
||||
|
||||
**- -prefix**
|
||||
Specify the installation prefix, *e.g.* ``$ROOTSYS`` if already defined (by default: ``/usr/local``).
|
||||
**- -with-rootsys**
|
||||
Specify the top of the ``ROOT`` installation directory, *e.g.* ``$ROOTSYS`` if already defined.
|
||||
**- -with-fftw3**
|
||||
Specify the prefix of the ``FFTW3`` installation. *e.g.* ``/usr/local`` or ``/usr``.
|
||||
**- -with-gsl**
|
||||
Set the prefix of the ``GSL`` installation, *e.g.* ``/usr/local`` or ``/usr``.
|
||||
**- -with-boostinc**
|
||||
Set the path to the header files of the ``Boost`` installation, *e.g.* ``/usr/local/include`` or ``/usr/include``.
|
||||
**- -with-hdf4**
|
||||
Set the prefix of the ``HDF4`` installation, *e.g.* ``/usr/local`` (only useful in conjunction with the ``NeXus`` support).
|
||||
**- -with-hdf5**
|
||||
Set the prefix of the ``HDF5`` installation, *e.g.* ``/usr`` (only useful in conjunction with the ``NeXus`` support).
|
||||
**- -with-nexus**
|
||||
Set the prefix of the ``NeXus`` installation, *e.g.* ``/usr/local`` (only useful in conjunction with the ``NeXus`` support).
|
||||
**- -with-qt3**
|
||||
Set the prefix of the ``Qt3`` installation, *e.g.* ``/usr/lib/qt-3.3`` (only useful in conjunction with building ``musrgui``).
|
||||
**- -with-qt4**
|
||||
Set the prefix of the ``Qt4`` installation, *e.g.* ``/usr/lib/qt47`` (only useful in conjunction with building ``musredit``).
|
||||
**- -with-qt5**
|
||||
Set the prefix of the ``Qt5`` installation, *e.g.* ``/usr/lib64`` (only useful in conjunction with building ``musredit``).
|
||||
**- -enable-NeXus**
|
||||
Enable the support of ``NeXus`` data files (requires the ``HDF4``, ``HDF5`` and ``NeXus`` libraries to be installed).
|
||||
**- -disable-editor**
|
||||
Disable the integrated building of ``musredit``/``musrgui``.
|
||||
**- -disable-omp**
|
||||
Switches off the `OpenMP <http://en.wikipedia.org/wiki/OpenMP>`_ features of ``musrfit`` (parallelization of the :math:`\chi^2` calculation when compiled with GCC ≥ 4.2).
|
||||
|
||||
Normally it should not be necessary to make use of any of the options except for specifying the installation path with ``--prefix``. The
|
||||
other paths should be detected automatically. If this does not work for some reason the configure script will terminate and ask for the
|
||||
information. When the configure script has been called successfully everything is ready for building the ``musrfit`` libraries and executables.
|
||||
A standard installation sequence (without ``NeXus`` support) might then look like (In case the normal user has no write permissions to the
|
||||
``$ROOTSYS`` and the installation path the "make install" commands have to be executed as superuser.):
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
$ cd $HOME/Apps/musrfit
|
||||
$ sh autogen.sh
|
||||
$ ./configure --prefix=$ROOTSYS
|
||||
$ make
|
||||
$ make install
|
||||
$ /sbin/ldconfig # (as superuser)
|
||||
|
||||
|
||||
.. index:: musrfit-build-cmake-macos
|
||||
|
||||
musrfit build with cmake
|
||||
@ -1521,8 +1338,7 @@ musredit
|
||||
|
||||
In the latest version of ``musrfit`` the configure script tries to determine automatically the highest
|
||||
available Qt version. In case this is found, the editor ``musredit`` is built already together with ``musrfit``.
|
||||
If not, one can try to call the configure script with the **--with-qt5** option (``automake``). ``cmake`` will
|
||||
determine everthing automatically. To install this editor separately, *i.e.* by “hand” do
|
||||
If not, try the following:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Acknowledgements — musrfit 1.4.1 documentation</title>
|
||||
<title>Acknowledgements — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="Bugtracking" href="bugtracking.html" />
|
||||
<link rel="prev" title="MusrRoot - an Extensible Open File Format for μSR" href="musr-root.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="musr-root.html" title="MusrRoot - an Extensible Open File Format for μSR"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -108,12 +108,12 @@ extremely competent way to deal with his projects as well as to deal with the ch
|
||||
<li class="right" >
|
||||
<a href="musr-root.html" title="MusrRoot - an Extensible Open File Format for μSR"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>any2many - a Universal μSR-file-format converter — musrfit 1.4.1 documentation</title>
|
||||
<title>any2many - a Universal μSR-file-format converter — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="MusrRoot - an Extensible Open File Format for μSR" href="musr-root.html" />
|
||||
<link rel="prev" title="msr2data - A Program for Automatically Processing Multiple musrfit msr Files" href="msr2data.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="msr2data.html" title="msr2data - A Program for Automatically Processing Multiple musrfit msr Files"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -102,12 +102,12 @@ For a detailed description see <a class="reference internal" href="user-manual.h
|
||||
<li class="right" >
|
||||
<a href="msr2data.html" title="msr2data - A Program for Automatically Processing Multiple musrfit msr Files"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Bugtracking — musrfit 1.4.1 documentation</title>
|
||||
<title>Bugtracking — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="prev" title="Acknowledgements" href="acknowledgement.html" />
|
||||
</head>
|
||||
<body>
|
||||
@ -37,7 +37,7 @@
|
||||
<li class="right" >
|
||||
<a href="acknowledgement.html" title="Acknowledgements"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -93,12 +93,12 @@ or send an e-mail to A. Suter at PSI.</p>
|
||||
<li class="right" >
|
||||
<a href="acknowledgement.html" title="Acknowledgements"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>How to Cite musrfit? — musrfit 1.4.1 documentation</title>
|
||||
<title>How to Cite musrfit? — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="Tutorial for musrfit" href="tutorial.html" />
|
||||
<link rel="prev" title="Welcome to the musrfit documentation!" href="index.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="index.html" title="Welcome to the musrfit documentation!"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -114,12 +114,12 @@
|
||||
<li class="right" >
|
||||
<a href="index.html" title="Welcome to the musrfit documentation!"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -7,7 +7,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Index — musrfit 1.4.1 documentation</title>
|
||||
<title>Index — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -15,7 +15,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -25,7 +25,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
</head>
|
||||
<body>
|
||||
<div class="related">
|
||||
@ -34,7 +34,7 @@
|
||||
<li class="right" style="margin-right: 10px">
|
||||
<a href="#" title="General Index"
|
||||
accesskey="I">index</a></li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -179,7 +179,7 @@
|
||||
</dl></td>
|
||||
<td style="width: 33%" valign="top"><dl>
|
||||
|
||||
<dt><a href="setup-standard.html#index-22">cygwin</a>
|
||||
<dt><a href="setup-standard.html#index-21">cygwin</a>
|
||||
</dt>
|
||||
|
||||
</dl></td>
|
||||
@ -243,7 +243,7 @@
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-32">fink</a>
|
||||
<dt><a href="setup-standard.html#index-30">fink</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -407,7 +407,7 @@
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%" valign="top"><dl>
|
||||
|
||||
<dt><a href="setup-standard.html#index-29">macports</a>
|
||||
<dt><a href="setup-standard.html#index-27">macports</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -542,6 +542,8 @@
|
||||
<dt><a href="mupp.html#index-2">mupp-scripting</a>
|
||||
</dt>
|
||||
|
||||
</dl></td>
|
||||
<td style="width: 33%" valign="top"><dl>
|
||||
|
||||
<dt><a href="mupp.html#index-3">mupp-usage</a>
|
||||
</dt>
|
||||
@ -550,10 +552,8 @@
|
||||
<dt><a href="musredit.html#index-0">musredit</a>
|
||||
</dt>
|
||||
|
||||
</dl></td>
|
||||
<td style="width: 33%" valign="top"><dl>
|
||||
|
||||
<dt><a href="setup-standard.html#index-38">musredit-build-macos</a>
|
||||
<dt><a href="setup-standard.html#index-35">musredit-build-macos</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -561,11 +561,11 @@
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-21">musredit-install-linux</a>
|
||||
<dt><a href="setup-standard.html#index-20">musredit-install-linux</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-28">musredit-install-windows</a>
|
||||
<dt><a href="setup-standard.html#index-26">musredit-install-windows</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -577,27 +577,15 @@
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-18">musrfit-build-automake-linux</a>
|
||||
<dt><a href="setup-standard.html#index-18">musrfit-build-cmake-linux</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-36">musrfit-build-automake-macos</a>
|
||||
<dt><a href="setup-standard.html#index-34">musrfit-build-cmake-macos</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-26">musrfit-build-automake-windows</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-19">musrfit-build-cmake-linux</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-37">musrfit-build-cmake-macos</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-27">musrfit-build-cmake-windows</a>
|
||||
<dt><a href="setup-standard.html#index-25">musrfit-build-cmake-windows</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -605,15 +593,15 @@
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-35">musrfit-build-macos</a>
|
||||
<dt><a href="setup-standard.html#index-33">musrfit-build-macos</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-25">musrfit-build-windows</a>
|
||||
<dt><a href="setup-standard.html#index-24">musrfit-build-windows</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-20">musrfit-post-install-linux</a>
|
||||
<dt><a href="setup-standard.html#index-19">musrfit-post-install-linux</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -707,7 +695,7 @@
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-33">nexus-build-fink</a>
|
||||
<dt><a href="setup-standard.html#index-31">nexus-build-fink</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -717,11 +705,11 @@
|
||||
</dl></td>
|
||||
<td style="width: 33%" valign="top"><dl>
|
||||
|
||||
<dt><a href="setup-standard.html#index-30">nexus-build-macports</a>
|
||||
<dt><a href="setup-standard.html#index-28">nexus-build-macports</a>
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-23">nexus-build-windows</a>
|
||||
<dt><a href="setup-standard.html#index-22">nexus-build-windows</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -787,7 +775,7 @@
|
||||
<table style="width: 100%" class="indextable genindextable"><tr>
|
||||
<td style="width: 33%" valign="top"><dl>
|
||||
|
||||
<dt><a href="setup-standard.html#index-34">root-build-fink</a>
|
||||
<dt><a href="setup-standard.html#index-32">root-build-fink</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -795,13 +783,13 @@
|
||||
</dt>
|
||||
|
||||
|
||||
<dt><a href="setup-standard.html#index-31">root-build-macports</a>
|
||||
<dt><a href="setup-standard.html#index-29">root-build-macports</a>
|
||||
</dt>
|
||||
|
||||
</dl></td>
|
||||
<td style="width: 33%" valign="top"><dl>
|
||||
|
||||
<dt><a href="setup-standard.html#index-24">root-build-windows</a>
|
||||
<dt><a href="setup-standard.html#index-23">root-build-windows</a>
|
||||
</dt>
|
||||
|
||||
|
||||
@ -982,12 +970,12 @@
|
||||
<li class="right" style="margin-right: 10px">
|
||||
<a href="#" title="General Index"
|
||||
>index</a></li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Welcome to the musrfit documentation! — musrfit 1.4.1 documentation</title>
|
||||
<title>Welcome to the musrfit documentation! — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="#" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="#" />
|
||||
<link rel="next" title="How to Cite musrfit?" href="cite.html" />
|
||||
</head>
|
||||
<body>
|
||||
@ -37,7 +37,7 @@
|
||||
<li class="right" >
|
||||
<a href="cite.html" title="How to Cite musrfit?"
|
||||
accesskey="N">next</a> |</li>
|
||||
<li><a href="#">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="#">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -180,12 +180,12 @@
|
||||
<li class="right" >
|
||||
<a href="cite.html" title="How to Cite musrfit?"
|
||||
>next</a> |</li>
|
||||
<li><a href="#">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="#">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>msr2data - A Program for Automatically Processing Multiple musrfit msr Files — musrfit 1.4.1 documentation</title>
|
||||
<title>msr2data - A Program for Automatically Processing Multiple musrfit msr Files — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="any2many - a Universal μSR-file-format converter" href="any2many.html" />
|
||||
<link rel="prev" title="mupp - μSR Parameter Plotter" href="mupp.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="mupp.html" title="mupp - μSR Parameter Plotter"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -434,12 +434,12 @@ fit serves as template for the second and so on. The template field stays empty
|
||||
<li class="right" >
|
||||
<a href="mupp.html" title="mupp - μSR Parameter Plotter"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>mupp - μSR Parameter Plotter — musrfit 1.4.1 documentation</title>
|
||||
<title>mupp - μSR Parameter Plotter — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="msr2data - A Program for Automatically Processing Multiple musrfit msr Files" href="msr2data.html" />
|
||||
<link rel="prev" title="musredit: the GUI Based Interface to musrfit" href="musredit.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="musredit.html" title="musredit: the GUI Based Interface to musrfit"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -252,12 +252,12 @@ SCRIPT COMMANDS:
|
||||
<li class="right" >
|
||||
<a href="musredit.html" title="musredit: the GUI Based Interface to musrfit"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>MusrRoot - an Extensible Open File Format for μSR — musrfit 1.4.1 documentation</title>
|
||||
<title>MusrRoot - an Extensible Open File Format for μSR — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="Acknowledgements" href="acknowledgement.html" />
|
||||
<link rel="prev" title="any2many - a Universal μSR-file-format converter" href="any2many.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="any2many.html" title="any2many - a Universal μSR-file-format converter"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -923,12 +923,12 @@ the entry has been added. The last token, <tt class="docutils literal"><span cla
|
||||
<li class="right" >
|
||||
<a href="any2many.html" title="any2many - a Universal μSR-file-format converter"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>musredit: the GUI Based Interface to musrfit — musrfit 1.4.1 documentation</title>
|
||||
<title>musredit: the GUI Based Interface to musrfit — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="mupp - μSR Parameter Plotter" href="mupp.html" />
|
||||
<link rel="prev" title="Setting up musrfit / DKS: High Speed Fitting with GPU’s" href="setup-dks.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="setup-dks.html" title="Setting up musrfit / DKS: High Speed Fitting with GPU’s"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -550,12 +550,12 @@ the corresponding fit parameter value, except the phases where the step will be
|
||||
<li class="right" >
|
||||
<a href="setup-dks.html" title="Setting up musrfit / DKS: High Speed Fitting with GPU’s"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
Binary file not shown.
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Search — musrfit 1.4.1 documentation</title>
|
||||
<title>Search — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -25,7 +25,7 @@
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<script type="text/javascript" src="_static/searchtools.js"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<script type="text/javascript">
|
||||
jQuery(function() { Search.loadIndex("searchindex.js"); });
|
||||
</script>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" style="margin-right: 10px">
|
||||
<a href="genindex.html" title="General Index"
|
||||
accesskey="I">index</a></li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -89,12 +89,12 @@
|
||||
<li class="right" style="margin-right: 10px">
|
||||
<a href="genindex.html" title="General Index"
|
||||
>index</a></li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
File diff suppressed because one or more lines are too long
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Setting up musrfit / DKS: High Speed Fitting with GPU’s — musrfit 1.4.1 documentation</title>
|
||||
<title>Setting up musrfit / DKS: High Speed Fitting with GPU’s — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="musredit: the GUI Based Interface to musrfit" href="musredit.html" />
|
||||
<link rel="prev" title="Setting up musrfit on Different Platforms" href="setup-standard.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="setup-standard.html" title="Setting up musrfit on Different Platforms"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -160,39 +160,6 @@ switch the working branch which is done by</p>
|
||||
$ git checkout dks6
|
||||
</pre></div>
|
||||
</div>
|
||||
<div class="section" id="install-via-automake">
|
||||
<h4>Install via automake<a class="headerlink" href="#install-via-automake" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="admonition note">
|
||||
<p class="first admonition-title">Note</p>
|
||||
<p class="last">Currently <tt class="docutils literal"><span class="pre">automake</span></tt> is still supported but soon will be replaced by <tt class="docutils literal"><span class="pre">cmake</span></tt>. Only follow
|
||||
the <tt class="docutils literal"><span class="pre">automake</span></tt> procedure if you have good reasons.</p>
|
||||
</div>
|
||||
<p>The configure script for musrfit has now a couple of more tags/options, which are:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>- -enable-dks</strong></dt>
|
||||
<dd>by default this is set to no, hence if you want to have GPU support you need to enable it.</dd>
|
||||
<dt><strong>- -with-cuda</strong></dt>
|
||||
<dd>with this tag you tell the configure script where it can find <tt class="docutils literal"><span class="pre">CUDA</span></tt></dd>
|
||||
<dt><strong>- -with-opencl</strong></dt>
|
||||
<dd>with this tag you tell the configure script where it can find <tt class="docutils literal"><span class="pre">OpenCL</span></tt></dd>
|
||||
<dt><strong>- -with-dks</strong></dt>
|
||||
<dd>with this tag you tell the configure script where it can find <tt class="docutils literal"><span class="pre">DKS</span></tt></dd>
|
||||
</dl>
|
||||
<p>For a typical setup on a RHEL system it could look like this</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ ./configure --enable-ASlibs --enable-BMWlibs --enable-NeXus --with-dks<span class="o">=</span><span class="nv">$HOME</span>/Apps/DKS/exec --enable-dks --prefix<span class="o">=</span><span class="nv">$ROOTSYS</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>After</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ make
|
||||
$ make install
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>and updating the shared library lookup table (<em>only</em> needed for Linux)</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ /sbin/ldconfig <span class="c1"># as superuser / root</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>you are done with the setup.</p>
|
||||
</div>
|
||||
<div class="section" id="install-via-cmake">
|
||||
<h4>Install via cmake<a class="headerlink" href="#install-via-cmake" title="Permalink to this headline">¶</a></h4>
|
||||
<p>There is on more configuration switch</p>
|
||||
@ -201,7 +168,7 @@ $ make install
|
||||
<dd>it allows to enable/disable <tt class="docutils literal"><span class="pre">DKS</span></tt> support. The default is <tt class="docutils literal"><span class="pre"><value>=1</span></tt>, <em>i.e.</em> enabled. To disable use <tt class="docutils literal"><span class="pre"><value>=0</span></tt>.</dd>
|
||||
</dl>
|
||||
<p>For a typical setup on a RHEL or macOS system it could look like this</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ cmake ../ -DCMAKE_INSTALL_PREFIX<span class="o">=</span><span class="nv">$ROOTSYS</span> -DASlibs<span class="o">=</span><span class="m">1</span> -DBMWlibs<span class="o">=</span><span class="m">1</span> -Dnexus<span class="o">=</span><span class="m">1</span>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ cmake ../ -DCMAKE_INSTALL_PREFIX<span class="o">=</span><span class="nv">$ROOTSYS</span> -DASlibs<span class="o">=</span><span class="m">1</span> -DBMWlibs<span class="o">=</span><span class="m">1</span> -Dnexus<span class="o">=</span><span class="m">1</span> -Ddks<span class="o">=</span><span class="m">1</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>After</p>
|
||||
@ -354,12 +321,12 @@ The only thing you need <tt class="docutils literal"><span class="pre">DKS</span
|
||||
<li class="right" >
|
||||
<a href="setup-standard.html" title="Setting up musrfit on Different Platforms"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Setting up musrfit on Different Platforms — musrfit 1.4.1 documentation</title>
|
||||
<title>Setting up musrfit on Different Platforms — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="Setting up musrfit / DKS: High Speed Fitting with GPU’s" href="setup-dks.html" />
|
||||
<link rel="prev" title="Documentation of user libs (user functions)" href="user-libs.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="user-libs.html" title="Documentation of user libs (user functions)"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -62,11 +62,9 @@ it can also be set up under <strong>MS Windows</strong> (cygwin, only for the <e
|
||||
<p class="last">In case musrfit should be installed according to the description found on this page, the user is strongly encouraged to <em>read completely</em> each section dealing with the
|
||||
present installation step <em>before</em> starting the installation process!</p>
|
||||
</div>
|
||||
<p>Apart from <a class="reference external" href="http://gcc.gnu.org/">GCC, the GNU Compiler Collection</a> (<tt class="docutils literal"><span class="pre">gcc</span></tt>, <tt class="docutils literal"><span class="pre">g++</span></tt>), the GNU build tools <a class="reference external" href="http://www.gnu.org/software/autoconf/">autoconf</a>,
|
||||
<a class="reference external" href="http://www.gnu.org/software/automake/">automake</a>, and <a class="reference external" href="http://www.gnu.org/software/libtool/">libtool</a> are needed, if you want to build musrfit via the automake toolchain.
|
||||
The <tt class="docutils literal"><span class="pre">automake</span></tt> toolchain will eventually be droped in upcoming releases.
|
||||
If you plan to use the cmake toolchain (preferred way), <a class="reference external" href="https://cmake.org/">cmake</a>. Furthermore the helper tool <a class="reference external" href="http://pkg-config.freedesktop.org/wiki/">pkg-config</a> is
|
||||
needed and musrfit requires the installation of a few open-source libraries and programs including their header packages:</p>
|
||||
<p>Apart from <a class="reference external" href="http://gcc.gnu.org/">GCC, the GNU Compiler Collection</a> (<tt class="docutils literal"><span class="pre">gcc</span></tt>, <tt class="docutils literal"><span class="pre">g++</span></tt>), the build tool <a class="reference external" href="https://cmake.org/">cmake</a> is needed. Furthermore the helper
|
||||
tool <a class="reference external" href="http://pkg-config.freedesktop.org/wiki/">pkg-config</a> needs to be in place, and musrfit requires the installation of a few open-source libraries and programs including
|
||||
their header packages:</p>
|
||||
<dl class="docutils" id="index-2">
|
||||
<dt><strong>boost C++ libraries</strong></dt>
|
||||
<dd>The powerful Spirit parser framework used by musrfit is included in that collection of libraries. <em>Required version ≥ 1.33</em> (see <a class="reference external" href="http://www.boost.org/">boost C++ libraries</a>).</dd>
|
||||
@ -117,14 +115,15 @@ needed and musrfit requires the installation of a few open-source libraries and
|
||||
<dl class="docutils">
|
||||
<dt><strong>GNU/Linux</strong></dt>
|
||||
<dd>No serious problems are currently known. Tested distributions: <a class="reference external" href="https://www.redhat.com/de/technologies/linux-platforms/enterprise-linux">RHEL</a>, <a class="reference external" href="https://getfedora.org/">Fedora</a>,
|
||||
<a class="reference external" href="https://www.debian.org/">Debian</a>, <a class="reference external" href="https://www.ubuntu.com/">Ubuntu</a>, <a class="reference external" href="https://linuxmint.com/">Mint</a>, <a class="reference external" href="https://en.opensuse.org/Main_Page">openSUSE</a>.</dd>
|
||||
<a class="reference external" href="https://www.debian.org/">Debian</a>, <a class="reference external" href="https://www.ubuntu.com/">Ubuntu</a>, <a class="reference external" href="https://linuxmint.com/">Mint</a>, <a class="reference external" href="https://en.opensuse.org/Main_Page">openSUSE</a>,
|
||||
<a class="reference external" href="https://de.manjaro.org/">manjaro</a>, and <a class="reference external" href="https://antergos.com/">antergos</a>.</dd>
|
||||
<dt><strong>Mac OS X/macOS</strong></dt>
|
||||
<dd>No serious problems are currently known for macOS ≥ 10.6.</dd>
|
||||
<dt><strong>MS Windows</strong></dt>
|
||||
<dd><p class="first">Native <em>MS Windows</em> support is currently not available. Potential ways to get <tt class="docutils literal"><span class="pre">musrfit</span></tt> running are:</p>
|
||||
<ul class="last simple">
|
||||
<li>via installation of Linux via the Microsoft App store for Windows 10.</li>
|
||||
<li>via installation of the virtual machine on which you install Linux.</li>
|
||||
<li>via installation of the virtual machine on which you install Linux (probably the easiest for most Windows users).</li>
|
||||
<li>via <a class="reference external" href="https://www.cygwin.com/">cygwin</a>.</li>
|
||||
</ul>
|
||||
</dd>
|
||||
@ -178,9 +177,19 @@ the source code from the corresponding website, or to clone the git repo. If you
|
||||
<span id="index-15"></span><h4>Installation of NeXus requirements (optional)<a class="headerlink" href="#installation-of-nexus-requirements-optional" title="Permalink to this headline">¶</a></h4>
|
||||
<p><em>Only</em> if <tt class="docutils literal"><span class="pre">musrfit</span></tt> should support reading/writing data files in the <tt class="docutils literal"><span class="pre">NeXus</span></tt> format the further required
|
||||
software has to be set up. The required libraries and header files could either be available through the user’s
|
||||
GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. <em>E.g.</em> on
|
||||
Red Hat-like systems binary packages for <tt class="docutils literal"><span class="pre">MXML</span></tt>, <tt class="docutils literal"><span class="pre">HDF4</span></tt>, and <tt class="docutils literal"><span class="pre">HDF5</span></tt> might be called <tt class="docutils literal"><span class="pre">mxml</span></tt>, <tt class="docutils literal"><span class="pre">mxml-devel</span></tt>,
|
||||
<tt class="docutils literal"><span class="pre">hdf</span></tt>, <tt class="docutils literal"><span class="pre">hdf-devel</span></tt>, <tt class="docutils literal"><span class="pre">hdf5</span></tt>, <tt class="docutils literal"><span class="pre">hdf5-devel</span></tt>, on Debian-like systems <tt class="docutils literal"><span class="pre">libmxml1</span></tt>, <tt class="docutils literal"><span class="pre">libmxml-dev</span></tt>, <tt class="docutils literal"><span class="pre">libhdf4-dev</span></tt>, <tt class="docutils literal"><span class="pre">libhdf5-dev</span></tt>.</p>
|
||||
GNU/Linux distribution or if this is not the case, the packages can be installed from the source code. The necessary
|
||||
packages to build <tt class="docutils literal"><span class="pre">NeXus</span></tt> are <tt class="docutils literal"><span class="pre">MXML</span></tt>, (<tt class="docutils literal"><span class="pre">HDF4</span></tt>), and <tt class="docutils literal"><span class="pre">HDF5</span></tt>. This means, for a rpm-package based distro try something like:</p>
|
||||
<blockquote>
|
||||
<div><div class="highlight-bash"><div class="highlight"><pre><span></span>$ yum install mxml-devel hdf-devel hdf5-devel
|
||||
</pre></div>
|
||||
</div>
|
||||
</div></blockquote>
|
||||
<p>and on a deb-package based distro try something like:</p>
|
||||
<blockquote>
|
||||
<div><div class="highlight-bash"><div class="highlight"><pre><span></span>$ apt-get install libmxml-dev libhdf4-dev libhdf5-dev
|
||||
</pre></div>
|
||||
</div>
|
||||
</div></blockquote>
|
||||
<div class="admonition note">
|
||||
<p class="first admonition-title">Note</p>
|
||||
<p class="last"><tt class="docutils literal"><span class="pre">HDF4</span></tt> support within <tt class="docutils literal"><span class="pre">NeXus</span></tt> will be dropped by <tt class="docutils literal"><span class="pre">musrfit</span></tt> in the near future. If you <em>not</em> urgently need
|
||||
@ -211,9 +220,8 @@ $ sudo make install
|
||||
</div>
|
||||
<div class="section" id="index-16">
|
||||
<span id="id4"></span><h4>ROOT<a class="headerlink" href="#index-16" title="Permalink to this headline">¶</a></h4>
|
||||
<p>ROOT 5.34/xx is supported as legacy version <em>only</em>! <strong>The default now will be ROOT 6.xx/yy!</strong></p>
|
||||
<p>The ROOT framework may or may not be part of the GNU/Linux distribution. Some distributions are packing ROOT in a
|
||||
manner incompatible with the way it is needed for <tt class="docutils literal"><span class="pre">musrfit</span></tt>, though the situation is improving. If you are
|
||||
manner incompatible with the way it is needed by <tt class="docutils literal"><span class="pre">musrfit</span></tt>, though the situation is improving. If you are
|
||||
experienced enough you can try the packed ROOT version. Often ROOT is split in many sub-packages. Install the
|
||||
necessary ones (guess from the description below). <strong>One Warning:</strong> if the ROOT packages are upgraded after a
|
||||
yum update (apt-get update; apt-get upgrade) you might need to recompile <tt class="docutils literal"><span class="pre">musrfit</span></tt>. <em>If you are not sure about
|
||||
@ -235,12 +243,12 @@ be added starting with a ‘#’ which can be omitted. They are only the
|
||||
$ <span class="c1"># creat the Apps directory if not already present</span>
|
||||
$ mkdir Apps
|
||||
$ <span class="nb">cd</span> Apps
|
||||
$ git clone http://root.cern.ch/git/root.git
|
||||
$ git clone http://github.com/root-project/root.git
|
||||
$ <span class="nb">cd</span> root
|
||||
$ git tag -l
|
||||
$ <span class="c1"># git tag -l will list all available tags. In the next command choose the tag v6-14-00</span>
|
||||
$ <span class="c1"># git tag -l will list all available tags. In the next command choose the tag v6-16-00</span>
|
||||
$ <span class="c1"># or the latest official release number</span>
|
||||
$ git checkout -b v6-14-00 v6-14-00
|
||||
$ git checkout -b v6-16-00 v6-16-00
|
||||
$ <span class="c1"># now ROOT is ready to be configured. Below you will find the minimal ROOT configuration needed.</span>
|
||||
$ <span class="c1"># since we are using cmake build now, first we will need to create the build directory.</span>
|
||||
$ mkdir root_build
|
||||
@ -284,20 +292,18 @@ $ cmake --build ./ --clean-first
|
||||
</div>
|
||||
<div class="section" id="musrfit">
|
||||
<span id="index-17"></span><h3>musrfit<a class="headerlink" href="#musrfit" title="Permalink to this headline">¶</a></h3>
|
||||
<p>When all required software has been set up with the <tt class="docutils literal"><span class="pre">musrfit</span></tt> installation can be proceeded. First, the most
|
||||
<p>When all required software has been set up you can proceed with the <tt class="docutils literal"><span class="pre">musrfit</span></tt> installatio. First, the most
|
||||
recent source code should be downloaded. The preferred way of doing so is to clone the <tt class="docutils literal"><span class="pre">musrfit</span></tt> repository via git.
|
||||
Assuming the code should be located in <tt class="docutils literal"><span class="pre">$HOME/Apps</span></tt> this is achieved most easily calling from the terminal</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Apps
|
||||
$ git clone https://bitbucket.org/muonspin/musrfit.git
|
||||
$ <span class="c1"># Only if legacy ROOT 5.xx.yy is used include the next line</span>
|
||||
$ <span class="nb">cd</span> musrfit<span class="p">;</span> git checkout root5
|
||||
$ <span class="nb">cd</span> musrfit
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>or</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Apps
|
||||
$ git clone git://gitlab.psi.ch/nemu/musrfit.git
|
||||
$ <span class="c1"># Only if legacy ROOT 5.xx.yy is used include the next line</span>
|
||||
$ <span class="nb">cd</span> musrfit<span class="p">;</span> git checkout root5
|
||||
$ <span class="nb">cd</span> musrfit
|
||||
</pre></div>
|
||||
</div>
|
||||
<div class="admonition note">
|
||||
@ -309,78 +315,15 @@ will needed to switch branches first.</p>
|
||||
<p><strong>Update:</strong> If a local repository clone is already present (it needs to be newer than Dec. 2016), one can update it using:</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Apps/musrfit
|
||||
$ git pull
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>Now, depending whether you follow the <tt class="docutils literal"><span class="pre">automake</span></tt> or <tt class="docutils literal"><span class="pre">cmake</span></tt> tool chain you do</p>
|
||||
<p><strong>automake toolchain:</strong></p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ make uninstall
|
||||
$ make clean
|
||||
$ make
|
||||
$ make install
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>or</p>
|
||||
<p><strong>cmake toolchain:</strong></p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> build
|
||||
$ <span class="nb">cd</span> build
|
||||
$ xargs rm < install_manifest.txt
|
||||
$ cmake --build ./ --clean-first
|
||||
$ make install
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>As an alternative (if git is not available), the source code can also be downloaded from the following web-page: <a class="reference external" href="https://bitbucket.org/muonspin/musrfit/downloads">musrfit at bitbucket</a></p>
|
||||
<div class="section" id="musrfit-build-with-automake">
|
||||
<span id="index-18"></span><h4>musrfit build with automake<a class="headerlink" href="#musrfit-build-with-automake" title="Permalink to this headline">¶</a></h4>
|
||||
<p>After the source-code extraction the <tt class="docutils literal"><span class="pre">autogen.sh</span></tt> script is called to prepare the build environment.
|
||||
If it has been executed successfully the <tt class="docutils literal"><span class="pre">configure</span></tt> script should be ready to collect all the information needed
|
||||
to create the Makefiles. If <tt class="docutils literal"><span class="pre">musrfit</span></tt> should support <tt class="docutils literal"><span class="pre">NeXus</span></tt> data files this has to be enabled by specifying the
|
||||
<tt class="docutils literal"><span class="pre">--enable-NeXus</span></tt> switch when calling configure. For an overview of all available options just call <tt class="docutils literal"><span class="pre">./configure</span> <span class="pre">--help</span></tt>.
|
||||
Besides the standard options there are a few special options which should be mentioned here:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>- -prefix</strong></dt>
|
||||
<dd>Specify the installation prefix, <em>e.g.</em> <tt class="docutils literal"><span class="pre">$ROOTSYS</span></tt> if already defined (by default: <tt class="docutils literal"><span class="pre">/usr/local</span></tt>).</dd>
|
||||
<dt><strong>- -with-rootsys</strong></dt>
|
||||
<dd>Specify the top of the <tt class="docutils literal"><span class="pre">ROOT</span></tt> installation directory, <em>e.g.</em> <tt class="docutils literal"><span class="pre">$ROOTSYS</span></tt> if already defined.</dd>
|
||||
<dt><strong>- -with-fftw3</strong></dt>
|
||||
<dd>Specify the prefix of the <tt class="docutils literal"><span class="pre">FFTW3</span></tt> installation. <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> or <tt class="docutils literal"><span class="pre">/usr</span></tt>.</dd>
|
||||
<dt><strong>- -with-gsl</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">GSL</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> or <tt class="docutils literal"><span class="pre">/usr</span></tt>.</dd>
|
||||
<dt><strong>- -with-boostinc</strong></dt>
|
||||
<dd>Set the path to the header files of the <tt class="docutils literal"><span class="pre">Boost</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local/include</span></tt> or <tt class="docutils literal"><span class="pre">/usr/include</span></tt>.</dd>
|
||||
<dt><strong>- -with-hdf4</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">HDF4</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support).</dd>
|
||||
<dt><strong>- -with-hdf5</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">HDF5</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support).</dd>
|
||||
<dt><strong>- -with-nexus</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">NeXus</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support).</dd>
|
||||
<dt><strong>- -with-qt3</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt3</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib/qt-3.3</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musrgui</span></tt>).</dd>
|
||||
<dt><strong>- -with-qt4</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt4</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib/qt47</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musredit</span></tt>).</dd>
|
||||
<dt><strong>- -with-qt5</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt5</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib64</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musredit</span></tt>).</dd>
|
||||
<dt><strong>- -enable-NeXus</strong></dt>
|
||||
<dd>Enable the support of <tt class="docutils literal"><span class="pre">NeXus</span></tt> data files (requires the <tt class="docutils literal"><span class="pre">HDF4</span></tt>, <tt class="docutils literal"><span class="pre">HDF5</span></tt> and <tt class="docutils literal"><span class="pre">NeXus</span></tt> libraries to be installed).</dd>
|
||||
<dt><strong>- -disable-editor</strong></dt>
|
||||
<dd>Disable the integrated building of <tt class="docutils literal"><span class="pre">musredit</span></tt>/<tt class="docutils literal"><span class="pre">musrgui</span></tt>.</dd>
|
||||
<dt><strong>- -disable-omp</strong></dt>
|
||||
<dd>Switches off the <a class="reference external" href="http://en.wikipedia.org/wiki/OpenMP">OpenMP</a> features of <tt class="docutils literal"><span class="pre">musrfit</span></tt> (parallelization of the <span class="math">\(\chi^2\)</span> calculation when compiled with GCC ≥ 4.2).</dd>
|
||||
</dl>
|
||||
<p>Normally it should not be necessary to make use of any of the options except for specifying the installation path with <tt class="docutils literal"><span class="pre">--prefix</span></tt>. The
|
||||
other paths should be detected automatically. If this does not work for some reason the configure script will terminate and ask for the
|
||||
information. When the configure script has been called successfully everything is ready for building the <tt class="docutils literal"><span class="pre">musrfit</span></tt> libraries and executables.
|
||||
A standard installation sequence (without <tt class="docutils literal"><span class="pre">NeXus</span></tt> support) might then look like (In case the normal user has no write permissions to the
|
||||
<tt class="docutils literal"><span class="pre">$ROOTSYS</span></tt> and the installation path the “make install” commands have to be executed as superuser.):</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Apps/musrfit
|
||||
$ sh autogen.sh
|
||||
$ ./configure --prefix<span class="o">=</span><span class="nv">$ROOTSYS</span>
|
||||
$ make
|
||||
$ make install
|
||||
$ /sbin/ldconfig <span class="c1"># (as superuser)</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="musrfit-build-with-cmake">
|
||||
<span id="index-19"></span><h4>musrfit build with cmake<a class="headerlink" href="#musrfit-build-with-cmake" title="Permalink to this headline">¶</a></h4>
|
||||
<span id="index-18"></span><h4>musrfit build with cmake<a class="headerlink" href="#musrfit-build-with-cmake" title="Permalink to this headline">¶</a></h4>
|
||||
<p>Currently the following configuration switches for <tt class="docutils literal"><span class="pre">musrfit</span></tt> are available:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>-DCMAKE_INSTALL_PREFIX=<prefix-path></strong></dt>
|
||||
@ -421,7 +364,7 @@ $ /sbin/ldconfig <span class="c1"># (as superus
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="musrfit-last-step-of-the-installation">
|
||||
<span id="index-20"></span><h4>musrfit last step of the installation<a class="headerlink" href="#musrfit-last-step-of-the-installation" title="Permalink to this headline">¶</a></h4>
|
||||
<span id="index-19"></span><h4>musrfit last step of the installation<a class="headerlink" href="#musrfit-last-step-of-the-installation" title="Permalink to this headline">¶</a></h4>
|
||||
<p>In order to finish the installation of musrfit two more things should be done:</p>
|
||||
<blockquote>
|
||||
<div><ul>
|
||||
@ -440,10 +383,9 @@ detailed information on this XML file refer to the <a class="reference internal"
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="musredit">
|
||||
<span id="index-21"></span><h3>musredit<a class="headerlink" href="#musredit" title="Permalink to this headline">¶</a></h3>
|
||||
<span id="index-20"></span><h3>musredit<a class="headerlink" href="#musredit" title="Permalink to this headline">¶</a></h3>
|
||||
<p>In the latest version of <tt class="docutils literal"><span class="pre">musrfit</span></tt> the configure script tries to determine automatically the highest available <tt class="docutils literal"><span class="pre">Qt</span></tt> version.
|
||||
In case this is found, the editor <tt class="docutils literal"><span class="pre">musredit</span></tt> is built already together with <tt class="docutils literal"><span class="pre">musrfit</span></tt>. If not, one can try to call
|
||||
the configure script with the <strong>- -with-qt5</strong> option (<tt class="docutils literal"><span class="pre">automake</span></tt>). <tt class="docutils literal"><span class="pre">cmake</span></tt> will determine everthing automatically.
|
||||
In case this is found, the editor <tt class="docutils literal"><span class="pre">musredit</span></tt> is built already together with <tt class="docutils literal"><span class="pre">musrfit</span></tt>.
|
||||
To install this editor separately, <em>i.e.</em> by “hand” do</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Apps/musrfit/src/musredit_qt5
|
||||
$ <span class="c1"># for some distributions you will need qmake-qt5 for the next command</span>
|
||||
@ -505,7 +447,7 @@ Please also be aware of the fact that the X server which is going to be installe
|
||||
<div class="section" id="id5">
|
||||
<h3>Requirements<a class="headerlink" href="#id5" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="setting-up-cygwin">
|
||||
<span id="index-22"></span><h4>Setting up Cygwin<a class="headerlink" href="#setting-up-cygwin" title="Permalink to this headline">¶</a></h4>
|
||||
<span id="index-21"></span><h4>Setting up Cygwin<a class="headerlink" href="#setting-up-cygwin" title="Permalink to this headline">¶</a></h4>
|
||||
<p>For the start go to the Cygwin website, download the setup file and use it to install Cygwin 1.7 or newer. During the installation
|
||||
process you will be asked where you want to install Cygwin and normally the default choice should just be fine. At some point you
|
||||
will be asked which packages should be installed. Make sure that you choose at least the following (or packages with revisions close
|
||||
@ -552,8 +494,8 @@ the later handling will be easier if a symbolic link to these files is created n
|
||||
<div class="section" id="id6">
|
||||
<h4>Everything but ROOT and NeXus<a class="headerlink" href="#id6" title="Permalink to this headline">¶</a></h4>
|
||||
</div>
|
||||
<div class="section" id="index-23">
|
||||
<span id="id7"></span><h4>Installation of NeXus requirements (optional)<a class="headerlink" href="#index-23" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="section" id="index-22">
|
||||
<span id="id7"></span><h4>Installation of NeXus requirements (optional)<a class="headerlink" href="#index-22" title="Permalink to this headline">¶</a></h4>
|
||||
<p>Only if <tt class="docutils literal"><span class="pre">musrfit</span></tt> should support reading data files in the <tt class="docutils literal"><span class="pre">NeXus</span></tt> format the further required software has
|
||||
to be set up. Under <tt class="docutils literal"><span class="pre">Cygwin</span></tt> of all the required libraries only <tt class="docutils literal"><span class="pre">HDF5</span></tt> is available. The packages <tt class="docutils literal"><span class="pre">hdf5</span></tt> and
|
||||
<tt class="docutils literal"><span class="pre">libhdf5-devel</span></tt> can be installed through the <tt class="docutils literal"><span class="pre">Cygwin</span></tt> setup. One should also make sure that <tt class="docutils literal"><span class="pre">bison</span></tt>, <tt class="docutils literal"><span class="pre">flex</span></tt>
|
||||
@ -597,8 +539,8 @@ $ make install
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-24">
|
||||
<span id="id8"></span><h4>ROOT<a class="headerlink" href="#index-24" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="section" id="index-23">
|
||||
<span id="id8"></span><h4>ROOT<a class="headerlink" href="#index-23" title="Permalink to this headline">¶</a></h4>
|
||||
<p>In order to install the <tt class="docutils literal"><span class="pre">ROOT</span></tt> system, there are two possibilities:</p>
|
||||
<ul>
|
||||
<li><p class="first">Download the precompiled Cygwin GCC 4.3 (or newer) package of the most recent <tt class="docutils literal"><span class="pre">ROOT</span></tt> version
|
||||
@ -639,8 +581,8 @@ for the user <tt class="docutils literal"><span class="pre">Username</span></tt>
|
||||
<p>Afterwards close the Cygwin shell and reopen it again for the installation of <tt class="docutils literal"><span class="pre">musrfit</span></tt>.</p>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-25">
|
||||
<span id="id9"></span><h3>musrfit<a class="headerlink" href="#index-25" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="index-24">
|
||||
<span id="id9"></span><h3>musrfit<a class="headerlink" href="#index-24" title="Permalink to this headline">¶</a></h3>
|
||||
<p>First, the most recent source code should be downloaded. The preferred way of doing so is to clone the <tt class="docutils literal"><span class="pre">musrfit</span></tt>
|
||||
repository via git. Assuming the code should be located in <tt class="docutils literal"><span class="pre">~/musrfit</span></tt> this is achieved most easily calling from the terminal</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span>
|
||||
@ -659,58 +601,8 @@ $ git pull
|
||||
</div>
|
||||
<p>As an alternative (if git is not available), the source code can also be downloaded from the following
|
||||
web-page: <a class="reference external" href="https://bitbucket.org/muonspin/musrfit/downloads">musrfit at bitbucket</a>.</p>
|
||||
<div class="section" id="index-26">
|
||||
<span id="id10"></span><h4>musrfit build with automake<a class="headerlink" href="#index-26" title="Permalink to this headline">¶</a></h4>
|
||||
<p>After the source-code extraction the <tt class="docutils literal"><span class="pre">autogen.sh</span></tt> script is called to prepare the build environment.
|
||||
If it has been executed successfully the <tt class="docutils literal"><span class="pre">configure</span></tt> script should be ready to collect all the information
|
||||
needed to create the Makefiles. If <tt class="docutils literal"><span class="pre">musrfit</span></tt> should support <tt class="docutils literal"><span class="pre">NeXus</span></tt> data files this has to be enabled by
|
||||
specifying the <tt class="docutils literal"><span class="pre">--enable-static</span> <span class="pre">--enable-NeXus</span></tt> switches when calling configure. For an overview of all
|
||||
available options just call <tt class="docutils literal"><span class="pre">./configure</span> <span class="pre">--help</span></tt>. Besides the standard options there are a few special
|
||||
options which should be mentioned here:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>- -prefix</strong></dt>
|
||||
<dd>Specify the installation prefix, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/opt/root-system</span></tt> (by default: <tt class="docutils literal"><span class="pre">/usr/local</span></tt>)</dd>
|
||||
<dt><strong>- -with-rootsys</strong></dt>
|
||||
<dd>Specify the top of the <tt class="docutils literal"><span class="pre">ROOT</span></tt> installation directory, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/opt/root-system</span></tt></dd>
|
||||
<dt><strong>- -with-fftw3</strong></dt>
|
||||
<dd>Specify the prefix of the <tt class="docutils literal"><span class="pre">FFTW3</span></tt> installation. <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> or <tt class="docutils literal"><span class="pre">/usr</span></tt></dd>
|
||||
<dt><strong>- -with-gsl</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">GSL</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> or <tt class="docutils literal"><span class="pre">/usr</span></tt></dd>
|
||||
<dt><strong>- -with-boostinc</strong></dt>
|
||||
<dd>Set the path to the header files of the <tt class="docutils literal"><span class="pre">Boost</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local/include</span></tt> or <tt class="docutils literal"><span class="pre">/usr/include</span></tt></dd>
|
||||
<dt><strong>- -with-hdf4</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">HDF4</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support)</dd>
|
||||
<dt><strong>- -with-hdf5</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">HDF5</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support)</dd>
|
||||
<dt><strong>- -with-nexus</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">NeXus</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support)</dd>
|
||||
<dt><strong>- -with-qt3</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt3</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib/qt-3.3</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musrgui</span></tt>)</dd>
|
||||
<dt><strong>- -with-qt4</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt4</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib/qt47</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musredit</span></tt>)</dd>
|
||||
<dt><strong>- -with-qt5</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt5</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib/qt56</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musredit</span></tt>)</dd>
|
||||
<dt><strong>- -enable-NeXus</strong></dt>
|
||||
<dd>Enable the support of <tt class="docutils literal"><span class="pre">NeXus</span></tt> data files (requires the <tt class="docutils literal"><span class="pre">HDF4</span></tt>, <tt class="docutils literal"><span class="pre">HDF5</span></tt> and <tt class="docutils literal"><span class="pre">NeXus</span></tt> libraries to be installed).</dd>
|
||||
<dt><strong>- -disable-editor</strong></dt>
|
||||
<dd>Disable the integrated building of <tt class="docutils literal"><span class="pre">musredit</span></tt>/<tt class="docutils literal"><span class="pre">musrgui</span></tt>.</dd>
|
||||
<dt><strong>- -disable-omp</strong></dt>
|
||||
<dd>Switches off the <tt class="docutils literal"><span class="pre">OpenMP</span></tt> features of <tt class="docutils literal"><span class="pre">musrfit</span></tt> (parallelization of the <span class="math">\(\chi^2\)</span> calculation when compiled with <tt class="docutils literal"><span class="pre">GCC</span></tt> ≥ 4.2)</dd>
|
||||
</dl>
|
||||
<p>Normally it should not be necessary to make use of any of the options except for specifying the installation path with <tt class="docutils literal"><span class="pre">--prefix</span></tt>.
|
||||
The other paths should be detected automatically. If this does not work for some reason the <tt class="docutils literal"><span class="pre">configure</span></tt> script will terminate and
|
||||
ask for the information. When the <tt class="docutils literal"><span class="pre">configure</span></tt> script has been called successfully everything is ready for building the <tt class="docutils literal"><span class="pre">musrfit</span></tt>
|
||||
libraries and executables. A standard installation sequence (without <tt class="docutils literal"><span class="pre">NeXus</span></tt> support) might then look like:</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> musrfit
|
||||
$ sh autogen.sh
|
||||
$ ./configure --prefix<span class="o">=</span><span class="nv">$ROOTSYS</span>
|
||||
$ make
|
||||
$ make install
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-27">
|
||||
<span id="id11"></span><h4>musrfit build with cmake<a class="headerlink" href="#index-27" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="section" id="index-25">
|
||||
<span id="id10"></span><h4>musrfit build with cmake<a class="headerlink" href="#index-25" title="Permalink to this headline">¶</a></h4>
|
||||
<p>Currently the following configuration switches for <tt class="docutils literal"><span class="pre">musrfit</span></tt> are available:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>-DCMAKE_INSTALL_PREFIX=<prefix-path></strong></dt>
|
||||
@ -751,12 +643,11 @@ $ /sbin/ldconfig <span class="c1"># (as superus
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-28">
|
||||
<span id="id12"></span><h3>musredit<a class="headerlink" href="#index-28" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="index-26">
|
||||
<span id="id11"></span><h3>musredit<a class="headerlink" href="#index-26" title="Permalink to this headline">¶</a></h3>
|
||||
<p>In the latest version of <tt class="docutils literal"><span class="pre">musrfit</span></tt> the configure script tries to determine automatically if
|
||||
Qt4.5 or higher is set up on the machine. In case this is found, the editor <tt class="docutils literal"><span class="pre">musredit</span></tt> is built
|
||||
readily with <tt class="docutils literal"><span class="pre">musrfit</span></tt>. If not, one can either try to call the <tt class="docutils literal"><span class="pre">configure</span></tt> script with the
|
||||
<tt class="docutils literal"><span class="pre">--with-qt4</span></tt> option or install this editor separately, <em>.e.g.</em>:</p>
|
||||
readily with <tt class="docutils literal"><span class="pre">musrfit</span></tt>. If not, try the following:</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> src/musredit
|
||||
$ qmake-qt4 musredit.pro
|
||||
</pre></div>
|
||||
@ -780,14 +671,14 @@ musredit <span class="p">&</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="id13">
|
||||
<h3>musrgui (obsolate)<a class="headerlink" href="#id13" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="id12">
|
||||
<h3>musrgui (obsolate)<a class="headerlink" href="#id12" title="Permalink to this headline">¶</a></h3>
|
||||
<p>If <tt class="docutils literal"><span class="pre">Qt4.5</span></tt> or higher is not available but <tt class="docutils literal"><span class="pre">Qt3</span></tt> is set up <tt class="docutils literal"><span class="pre">musrgui</span></tt> can be installed. For this
|
||||
please follow the instructions for the <tt class="docutils literal"><span class="pre">musredit</span></tt> installation where simply every <tt class="docutils literal"><span class="pre">musredit</span></tt> occurrence
|
||||
has to be replaced by <tt class="docutils literal"><span class="pre">musrgui</span></tt>, and <tt class="docutils literal"><span class="pre">qt4</span></tt> is replaced by <tt class="docutils literal"><span class="pre">qt3</span></tt>.</p>
|
||||
</div>
|
||||
<div class="section" id="id14">
|
||||
<h3>Check the installation<a class="headerlink" href="#id14" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="id13">
|
||||
<h3>Check the installation<a class="headerlink" href="#id13" title="Permalink to this headline">¶</a></h3>
|
||||
<p>In order to perform a quick test for finding out if the installation has been completed successfully,
|
||||
a few msr files together with the corresponding data files can be found in the <tt class="docutils literal"><span class="pre">musrfit</span></tt> source tree
|
||||
at doc/examples/.
|
||||
@ -819,7 +710,7 @@ or <a class="reference external" href="http://www.finkproject.org/">Fink</a> —
|
||||
In the following, both possibilities (using MacPorts or Fink) are described but it is emphasized here that
|
||||
it should be followed only <em>one</em> of the possible routes .</p>
|
||||
<div class="section" id="requirements-macports">
|
||||
<span id="index-29"></span><h3>Requirements (MacPorts)<a class="headerlink" href="#requirements-macports" title="Permalink to this headline">¶</a></h3>
|
||||
<span id="index-27"></span><h3>Requirements (MacPorts)<a class="headerlink" href="#requirements-macports" title="Permalink to this headline">¶</a></h3>
|
||||
<p>Before proceeding with the usage of the <tt class="docutils literal"><span class="pre">MacPorts</span></tt> system first a few useful tools provided by Apple together
|
||||
with OS X (on the installation DVD/CDs) should be installed:</p>
|
||||
<blockquote>
|
||||
@ -838,7 +729,7 @@ $ sudo xcodebuild -license
|
||||
<dl class="docutils">
|
||||
<dt><strong>X11</strong></dt>
|
||||
<dd>The X-window system is automatically installed on 10.5 Leopard and 10.6 Snow Leopard. For some other versions you also
|
||||
will need to install <cite>XQuartz <http://xquartz.macosforge.org/trac></cite>. If <tt class="docutils literal"><span class="pre">ROOT</span></tt> runs without <tt class="docutils literal"><span class="pre">XQuartz</span></tt> <em>do not</em>
|
||||
will need to install <a class="reference external" href="http://xquartz.macosforge.org/trac">XQuartz</a>. If <tt class="docutils literal"><span class="pre">ROOT</span></tt> runs without <tt class="docutils literal"><span class="pre">XQuartz</span></tt> <em>do not</em>
|
||||
install it.</dd>
|
||||
</dl>
|
||||
<p>After installing the <tt class="docutils literal"><span class="pre">Xcode</span></tt> tools go to the <a class="reference external" href="http://www.macports.org/install.php">MacPorts install page</a>, download
|
||||
@ -876,8 +767,8 @@ add a new line pointing to your local copy, <em>e.g.</em></p>
|
||||
</div>
|
||||
<p>With <tt class="docutils literal"><span class="pre">Qt5</span></tt>, <tt class="docutils literal"><span class="pre">musredit</span></tt> will be installed. If it happens that you used <tt class="docutils literal"><span class="pre">musrgui</span></tt> in the past,
|
||||
please change over to <tt class="docutils literal"><span class="pre">musredit</span></tt> since there will be no further development for <tt class="docutils literal"><span class="pre">musrgui</span></tt> anymore!</p>
|
||||
<div class="section" id="index-30">
|
||||
<span id="id15"></span><h4>Installation of NeXus requirements (optional)<a class="headerlink" href="#index-30" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="section" id="index-28">
|
||||
<span id="id14"></span><h4>Installation of NeXus requirements (optional)<a class="headerlink" href="#index-28" title="Permalink to this headline">¶</a></h4>
|
||||
<p><em>Only</em> if <tt class="docutils literal"><span class="pre">musrfit</span></tt> should support reading data files in the <tt class="docutils literal"><span class="pre">NeXus</span></tt> format the further required packages are set up:</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ sudo port -v install hdf4 hdf5
|
||||
</pre></div>
|
||||
@ -906,21 +797,21 @@ $ sudo make install
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-31">
|
||||
<span id="id16"></span><h4>ROOT<a class="headerlink" href="#index-31" title="Permalink to this headline">¶</a></h4>
|
||||
<p>ROOT 5.34/xx is supported as legacy version only! <strong>The default now will be ROOT 6.xx/yy!</strong></p>
|
||||
<div class="section" id="index-29">
|
||||
<span id="id15"></span><h4>ROOT<a class="headerlink" href="#index-29" title="Permalink to this headline">¶</a></h4>
|
||||
<p><strong>The default ROOT version is based on ROOT 6.xx/yy!</strong></p>
|
||||
<div class="section" id="root-installed-via-package-installer">
|
||||
<h5>ROOT installed via package installer<a class="headerlink" href="#root-installed-via-package-installer" title="Permalink to this headline">¶</a></h5>
|
||||
<p>The lazy way to get <tt class="docutils literal"><span class="pre">ROOT</span></tt> installed is via package installer. If your macOS is directly supported
|
||||
by the <tt class="docutils literal"><span class="pre">ROOT</span></tt> people you can download the package installer from the <tt class="docutils literal"><span class="pre">ROOT</span></tt> <a class="reference external" href="https://root.cern.ch/downloading-root">download page</a>.
|
||||
Choose the latest <tt class="docutils literal"><span class="pre">ROOT</span></tt> release and download you macOS version dmg-file, <em>e.g.</em> for macOS 10.13 (High Sierra)
|
||||
it is at the time of writting <tt class="docutils literal"><span class="pre">root_v6.14.00.macosx64-10.13-clang91.dmg</span></tt>. After the installation
|
||||
it is at the time of writting <tt class="docutils literal"><span class="pre">root_v6.16.00.macosx64-10.13-clang91.dmg</span></tt>. After the installation
|
||||
<tt class="docutils literal"><span class="pre">ROOT</span></tt> will be installed under <tt class="docutils literal"><span class="pre">/Application</span></tt> as owner root. In order to ease your life for the
|
||||
steps to follow and assuming you are the only guy working on your Mac, you could change the owner and group of the <tt class="docutils literal"><span class="pre">ROOT</span></tt> directory:</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> /Applications
|
||||
$ sudo chown -R <username> root_v6.14.00
|
||||
$ sudo chgrp -R staff root_v6.14.00
|
||||
$ sudo ln -s root_v6.14.00 root
|
||||
$ sudo chown -R <username> root_v6.16.00
|
||||
$ sudo chgrp -R staff root_v6.16.00
|
||||
$ sudo ln -s root_v6.16.00 root
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
@ -934,12 +825,12 @@ to install it somewhere else, just systematically replace the related terms of t
|
||||
For the following list of commands the ‘$’ will be given, the command prompt. Do not enter it! Also some
|
||||
comments will be added starting with a ‘#’ which can be omitted. They are only there to explain what is going on.</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Applications
|
||||
$ git clone http://root.cern.ch/git/root.git
|
||||
$ git clone http://github.com/root-project/root.git
|
||||
$ <span class="nb">cd</span> root
|
||||
$ git tag -l
|
||||
$ <span class="c1"># git tag -l will list all available tags. In the next command choose the tag v6-10-xx</span>
|
||||
$ <span class="c1"># where xx is the highest listed number, e.g. v6-14-00</span>
|
||||
$ git checkout -b v6-14-00 v6-14-00
|
||||
$ <span class="c1"># where xx is the highest listed number, e.g. v6-16-00</span>
|
||||
$ git checkout -b v6-16-00 v6-16-00
|
||||
$ <span class="c1"># now ROOT is ready to be configured. Below you will find the minimal ROOT configuration needed.</span>
|
||||
$ <span class="c1"># We will use the cmake out-of-source approach here.</span>
|
||||
$ mkdir root_build
|
||||
@ -1000,7 +891,7 @@ launchctl setenv LD_LIBRARY_PATH <span class="nv">$LD_LIBRARY_PATH</span>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="requirements-fink">
|
||||
<span id="index-32"></span><h3>Requirements (Fink)<a class="headerlink" href="#requirements-fink" title="Permalink to this headline">¶</a></h3>
|
||||
<span id="index-30"></span><h3>Requirements (Fink)<a class="headerlink" href="#requirements-fink" title="Permalink to this headline">¶</a></h3>
|
||||
<p>Before proceeding with the usage of the <a class="reference external" href="http://www.finkproject.org/">Fink</a> system first a few useful tools provided by Apple together with OS X (on the installation DVD/CDs) should be installed:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>Xcode</strong></dt>
|
||||
@ -1014,7 +905,7 @@ $ sudo xcodebuild -license
|
||||
</dd>
|
||||
<dt><strong>X11</strong></dt>
|
||||
<dd>The X-window system is automatically installed on 10.5 Leopard and 10.6 Snow Leopard. For some other versions you also
|
||||
will need to install <cite>XQuartz <http://xquartz.macosforge.org/trac></cite>. If <tt class="docutils literal"><span class="pre">ROOT</span></tt> runs without <tt class="docutils literal"><span class="pre">XQuartz</span></tt> <em>do not</em>
|
||||
will need to install <a class="reference external" href="http://xquartz.macosforge.org/trac">XQuartz</a>. If <tt class="docutils literal"><span class="pre">ROOT</span></tt> runs without <tt class="docutils literal"><span class="pre">XQuartz</span></tt> <em>do not</em>
|
||||
install it.</dd>
|
||||
</dl>
|
||||
<p>After installing the <tt class="docutils literal"><span class="pre">Xcode</span></tt> tools go to the <a class="reference external" href="http://www.finkproject.org/download/index.php?phpLang=en">Fink download page</a>,
|
||||
@ -1058,8 +949,8 @@ specific location, the later handling will be easier if a symbolic link to this
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>where <tt class="docutils literal"><span class="pre">x_yy_z</span></tt> has to be substituted by the correct version number, <em>e.g.</em> <tt class="docutils literal"><span class="pre">1_63_0</span></tt>.</p>
|
||||
<div class="section" id="index-33">
|
||||
<span id="id17"></span><h4>Installation of NeXus requirements (optional)<a class="headerlink" href="#index-33" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="section" id="index-31">
|
||||
<span id="id17"></span><h4>Installation of NeXus requirements (optional)<a class="headerlink" href="#index-31" title="Permalink to this headline">¶</a></h4>
|
||||
<p><em>Only</em> if <tt class="docutils literal"><span class="pre">musrfit</span></tt> should support reading data files in the <tt class="docutils literal"><span class="pre">NeXus</span></tt> format the further required
|
||||
packages can be installed through Fink (check for the most recent versions):</p>
|
||||
<div class="highlight-python"><div class="highlight"><pre><span></span>libjpeg hdf hdf5-cpp11 hdf5-cpp11-shlibs
|
||||
@ -1088,21 +979,21 @@ $ sudo make install
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-34">
|
||||
<span id="id18"></span><h4>ROOT<a class="headerlink" href="#index-34" title="Permalink to this headline">¶</a></h4>
|
||||
<p>ROOT 5.34/xx is supported as legacy version only and will likely to be dropped in 2018. <strong>The default now is ROOT 6.xx/yy!</strong></p>
|
||||
<div class="section" id="index-32">
|
||||
<span id="id18"></span><h4>ROOT<a class="headerlink" href="#index-32" title="Permalink to this headline">¶</a></h4>
|
||||
<p><strong>The default ROOT version is based on ROOT 6.xx/yy!</strong></p>
|
||||
<div class="section" id="id19">
|
||||
<h5>ROOT installed via package installer<a class="headerlink" href="#id19" title="Permalink to this headline">¶</a></h5>
|
||||
<p>The lazy way to get <tt class="docutils literal"><span class="pre">ROOT</span></tt> installed is via package installer. If your macOS is directly supported
|
||||
by the <tt class="docutils literal"><span class="pre">ROOT</span></tt> people you can download the package installer from the <tt class="docutils literal"><span class="pre">ROOT</span></tt> <a class="reference external" href="https://root.cern.ch/downloading-root">download page</a>.
|
||||
Choose the latest <tt class="docutils literal"><span class="pre">ROOT</span></tt> release and download you macOS version dmg-file, <em>e.g.</em> for macOS 10.13 (High Sierra)
|
||||
it is at the time of writting <tt class="docutils literal"><span class="pre">root_v6.14.00.macosx64-10.13-clang91.dmg</span></tt>. After the installation
|
||||
it is at the time of writting <tt class="docutils literal"><span class="pre">root_v6.16.00.macosx64-10.13-clang91.dmg</span></tt>. After the installation
|
||||
<tt class="docutils literal"><span class="pre">ROOT</span></tt> will be installed under <tt class="docutils literal"><span class="pre">/Application</span></tt> as owner root. In order to ease your life for the
|
||||
steps to follow and assuming you are the only guy working on your Mac, you could change the owner and group of the <tt class="docutils literal"><span class="pre">ROOT</span></tt> directory:</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> /Applications
|
||||
$ sudo chown -R <username> root_v6.14.00
|
||||
$ sudo chgrp -R staff root_v6.14.00
|
||||
$ sudo ln -s root_v6.14.00 root
|
||||
$ sudo chown -R <username> root_v6.16.00
|
||||
$ sudo chgrp -R staff root_v6.16.00
|
||||
$ sudo ln -s root_v6.16.00 root
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
@ -1116,12 +1007,12 @@ to install it somewhere else, just systematically replace the related terms of t
|
||||
For the following list of commands the ‘$’ will be given, the command prompt. Do not enter it! Also some
|
||||
comments will be added starting with a ‘#’ which can be omitted. They are only there to explain what is going on.</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Applications
|
||||
$ git clone http://root.cern.ch/git/root.git
|
||||
$ git clone http://github.com/root-project/root.git
|
||||
$ <span class="nb">cd</span> root
|
||||
$ git tag -l
|
||||
$ <span class="c1"># git tag -l will list all available tags. In the next command choose the tag v6-10-xx</span>
|
||||
$ <span class="c1"># where xx is the highest listed number, e.g. v6-14-00</span>
|
||||
$ git checkout -b v6-14-00 v6-14-00
|
||||
$ <span class="c1"># where xx is the highest listed number, e.g. v6-16-00</span>
|
||||
$ git checkout -b v6-16-00 v6-16-00
|
||||
$ <span class="c1"># now ROOT is ready to be configured. Below you will find the minimal ROOT configuration needed.</span>
|
||||
$ <span class="c1"># We will use the cmake out-of-source approach here.</span>
|
||||
$ mkdir root_build
|
||||
@ -1181,22 +1072,20 @@ launchctl setenv LD_LIBRARY_PATH <span class="nv">$LD_LIBRARY_PATH</span>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-35">
|
||||
<span id="id24"></span><h3>musrfit<a class="headerlink" href="#index-35" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="index-33">
|
||||
<span id="id24"></span><h3>musrfit<a class="headerlink" href="#index-33" title="Permalink to this headline">¶</a></h3>
|
||||
<p>First, the most recent source code should be downloaded. First, the most recent source code should be downloaded.
|
||||
The preferred way of doing so is to clone the <tt class="docutils literal"><span class="pre">musrfit</span></tt> repository via git. Assuming the code should be located
|
||||
in <tt class="docutils literal"><span class="pre">~/Applications/musrfit</span></tt> this is achieved most easily calling from the termin</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> ~/Applications
|
||||
$ git clone https://bitbucket.org/muonspin/musrfit.git
|
||||
$ <span class="c1"># Only if legacy ROOT 5.xx.yy is used include the next line</span>
|
||||
$ <span class="nb">cd</span> musrfit<span class="p">;</span> git checkout root5
|
||||
$ <span class="nb">cd</span> musrfit
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>or</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> ~/Applications
|
||||
$ git clone git://gitlab.psi.ch/nemu/musrfit.git
|
||||
$ <span class="c1"># Only if legacy ROOT 5.xx.yy is used include the next line</span>
|
||||
$ <span class="nb">cd</span> musrfit<span class="p">;</span> git checkout root5
|
||||
$ <span class="nb">cd</span> musrfit
|
||||
</pre></div>
|
||||
</div>
|
||||
<p>If a local repository clone is already present, one can update it using:</p>
|
||||
@ -1206,59 +1095,8 @@ $ git pull
|
||||
</div>
|
||||
<p>As an alternative (<em>if git is not available</em>), the source code can also be downloaded from the following
|
||||
web-page: <a class="reference external" href="https://bitbucket.org/muonspin/musrfit/downloads">musrfit at bitbucket</a>.</p>
|
||||
<div class="section" id="index-36">
|
||||
<span id="id25"></span><h4>musrfit build with automake<a class="headerlink" href="#index-36" title="Permalink to this headline">¶</a></h4>
|
||||
<p>After the source-code extraction the <tt class="docutils literal"><span class="pre">autogen.sh</span></tt> script is called to prepare the build environment.
|
||||
If it has been executed successfully the <tt class="docutils literal"><span class="pre">configure</span></tt> script should be ready to collect all the information needed
|
||||
to create the Makefiles. If <tt class="docutils literal"><span class="pre">musrfit</span></tt> should support <tt class="docutils literal"><span class="pre">NeXus</span></tt> data files this has to be enabled by specifying the
|
||||
<tt class="docutils literal"><span class="pre">--enable-NeXus</span></tt> switch when calling configure. For an overview of all available options just call <tt class="docutils literal"><span class="pre">./configure</span> <span class="pre">--help</span></tt>.
|
||||
Besides the standard options there are a few special options which should be mentioned here:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>- -prefix</strong></dt>
|
||||
<dd>Specify the installation prefix, <em>e.g.</em> <tt class="docutils literal"><span class="pre">$ROOTSYS</span></tt> if already defined (by default: <tt class="docutils literal"><span class="pre">/usr/local</span></tt>).</dd>
|
||||
<dt><strong>- -with-rootsys</strong></dt>
|
||||
<dd>Specify the top of the <tt class="docutils literal"><span class="pre">ROOT</span></tt> installation directory, <em>e.g.</em> <tt class="docutils literal"><span class="pre">$ROOTSYS</span></tt> if already defined.</dd>
|
||||
<dt><strong>- -with-fftw3</strong></dt>
|
||||
<dd>Specify the prefix of the <tt class="docutils literal"><span class="pre">FFTW3</span></tt> installation. <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> or <tt class="docutils literal"><span class="pre">/usr</span></tt>.</dd>
|
||||
<dt><strong>- -with-gsl</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">GSL</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> or <tt class="docutils literal"><span class="pre">/usr</span></tt>.</dd>
|
||||
<dt><strong>- -with-boostinc</strong></dt>
|
||||
<dd>Set the path to the header files of the <tt class="docutils literal"><span class="pre">Boost</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local/include</span></tt> or <tt class="docutils literal"><span class="pre">/usr/include</span></tt>.</dd>
|
||||
<dt><strong>- -with-hdf4</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">HDF4</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support).</dd>
|
||||
<dt><strong>- -with-hdf5</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">HDF5</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support).</dd>
|
||||
<dt><strong>- -with-nexus</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">NeXus</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/local</span></tt> (only useful in conjunction with the <tt class="docutils literal"><span class="pre">NeXus</span></tt> support).</dd>
|
||||
<dt><strong>- -with-qt3</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt3</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib/qt-3.3</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musrgui</span></tt>).</dd>
|
||||
<dt><strong>- -with-qt4</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt4</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib/qt47</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musredit</span></tt>).</dd>
|
||||
<dt><strong>- -with-qt5</strong></dt>
|
||||
<dd>Set the prefix of the <tt class="docutils literal"><span class="pre">Qt5</span></tt> installation, <em>e.g.</em> <tt class="docutils literal"><span class="pre">/usr/lib64</span></tt> (only useful in conjunction with building <tt class="docutils literal"><span class="pre">musredit</span></tt>).</dd>
|
||||
<dt><strong>- -enable-NeXus</strong></dt>
|
||||
<dd>Enable the support of <tt class="docutils literal"><span class="pre">NeXus</span></tt> data files (requires the <tt class="docutils literal"><span class="pre">HDF4</span></tt>, <tt class="docutils literal"><span class="pre">HDF5</span></tt> and <tt class="docutils literal"><span class="pre">NeXus</span></tt> libraries to be installed).</dd>
|
||||
<dt><strong>- -disable-editor</strong></dt>
|
||||
<dd>Disable the integrated building of <tt class="docutils literal"><span class="pre">musredit</span></tt>/<tt class="docutils literal"><span class="pre">musrgui</span></tt>.</dd>
|
||||
<dt><strong>- -disable-omp</strong></dt>
|
||||
<dd>Switches off the <a class="reference external" href="http://en.wikipedia.org/wiki/OpenMP">OpenMP</a> features of <tt class="docutils literal"><span class="pre">musrfit</span></tt> (parallelization of the <span class="math">\(\chi^2\)</span> calculation when compiled with GCC ≥ 4.2).</dd>
|
||||
</dl>
|
||||
<p>Normally it should not be necessary to make use of any of the options except for specifying the installation path with <tt class="docutils literal"><span class="pre">--prefix</span></tt>. The
|
||||
other paths should be detected automatically. If this does not work for some reason the configure script will terminate and ask for the
|
||||
information. When the configure script has been called successfully everything is ready for building the <tt class="docutils literal"><span class="pre">musrfit</span></tt> libraries and executables.
|
||||
A standard installation sequence (without <tt class="docutils literal"><span class="pre">NeXus</span></tt> support) might then look like (In case the normal user has no write permissions to the
|
||||
<tt class="docutils literal"><span class="pre">$ROOTSYS</span></tt> and the installation path the “make install” commands have to be executed as superuser.):</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Apps/musrfit
|
||||
$ sh autogen.sh
|
||||
$ ./configure --prefix<span class="o">=</span><span class="nv">$ROOTSYS</span>
|
||||
$ make
|
||||
$ make install
|
||||
$ /sbin/ldconfig <span class="c1"># (as superuser)</span>
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-37">
|
||||
<span id="id27"></span><h4>musrfit build with cmake<a class="headerlink" href="#index-37" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="section" id="index-34">
|
||||
<span id="id25"></span><h4>musrfit build with cmake<a class="headerlink" href="#index-34" title="Permalink to this headline">¶</a></h4>
|
||||
<p>Currently the following configuration switches for <tt class="docutils literal"><span class="pre">musrfit</span></tt> are available:</p>
|
||||
<dl class="docutils">
|
||||
<dt><strong>-DCMAKE_INSTALL_PREFIX=<prefix-path></strong></dt>
|
||||
@ -1298,8 +1136,8 @@ $ /sbin/ldconfig <span class="c1"># (as superus
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="id28">
|
||||
<h4>musrfit last step of the installation<a class="headerlink" href="#id28" title="Permalink to this headline">¶</a></h4>
|
||||
<div class="section" id="id26">
|
||||
<h4>musrfit last step of the installation<a class="headerlink" href="#id26" title="Permalink to this headline">¶</a></h4>
|
||||
<p>In order to finish the installation of <tt class="docutils literal"><span class="pre">musrfit</span></tt> two more things should be done:</p>
|
||||
<ul class="simple">
|
||||
<li>Define the <tt class="docutils literal"><span class="pre">MUSRFITPATH</span></tt> environment variable containing the path to the <tt class="docutils literal"><span class="pre">musrfit</span></tt> executables and <tt class="docutils literal"><span class="pre">XML</span></tt> files.
|
||||
@ -1315,12 +1153,11 @@ detailed information on this XML file refer to the <a class="reference internal"
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="index-38">
|
||||
<span id="id29"></span><h3>musredit<a class="headerlink" href="#index-38" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="index-35">
|
||||
<span id="id27"></span><h3>musredit<a class="headerlink" href="#index-35" title="Permalink to this headline">¶</a></h3>
|
||||
<p>In the latest version of <tt class="docutils literal"><span class="pre">musrfit</span></tt> the configure script tries to determine automatically the highest
|
||||
available Qt version. In case this is found, the editor <tt class="docutils literal"><span class="pre">musredit</span></tt> is built already together with <tt class="docutils literal"><span class="pre">musrfit</span></tt>.
|
||||
If not, one can try to call the configure script with the <strong>–with-qt5</strong> option (<tt class="docutils literal"><span class="pre">automake</span></tt>). <tt class="docutils literal"><span class="pre">cmake</span></tt> will
|
||||
determine everthing automatically. To install this editor separately, <em>i.e.</em> by “hand” do</p>
|
||||
If not, try the following:</p>
|
||||
<div class="highlight-bash"><div class="highlight"><pre><span></span>$ <span class="nb">cd</span> <span class="nv">$HOME</span>/Apps/musrfit/src/musredit_qt5
|
||||
$ <span class="c1"># for some distributions you will need qmake-qt5 for the next command</span>
|
||||
$ qmake musredit.pro
|
||||
@ -1353,8 +1190,8 @@ accomplish that, add the following lines to <tt class="docutils literal"><span c
|
||||
</pre></div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section" id="id30">
|
||||
<h3>Check the installation<a class="headerlink" href="#id30" title="Permalink to this headline">¶</a></h3>
|
||||
<div class="section" id="id28">
|
||||
<h3>Check the installation<a class="headerlink" href="#id28" title="Permalink to this headline">¶</a></h3>
|
||||
<p>In order to perform a quick test for finding out if the installation has been completed successfully, a few msr
|
||||
files together with the corresponding data files can be found in the musrfit source tree at <tt class="docutils literal"><span class="pre">doc/examples/</span></tt>.
|
||||
If <tt class="docutils literal"><span class="pre">musrgui</span></tt> has been installed, just open one of the <tt class="docutils literal"><span class="pre">test-*.msr</span></tt> files in the editor and test the <tt class="docutils literal"><span class="pre">musrfit</span></tt>
|
||||
@ -1386,7 +1223,6 @@ $ musrview test-histo-ROOT-NPP.msr
|
||||
</ul>
|
||||
</li>
|
||||
<li><a class="reference internal" href="#musrfit">musrfit</a><ul>
|
||||
<li><a class="reference internal" href="#musrfit-build-with-automake">musrfit build with automake</a></li>
|
||||
<li><a class="reference internal" href="#musrfit-build-with-cmake">musrfit build with cmake</a></li>
|
||||
<li><a class="reference internal" href="#musrfit-last-step-of-the-installation">musrfit last step of the installation</a></li>
|
||||
</ul>
|
||||
@ -1400,41 +1236,39 @@ $ musrview test-histo-ROOT-NPP.msr
|
||||
<li><a class="reference internal" href="#id5">Requirements</a><ul>
|
||||
<li><a class="reference internal" href="#setting-up-cygwin">Setting up Cygwin</a></li>
|
||||
<li><a class="reference internal" href="#id6">Everything but ROOT and NeXus</a></li>
|
||||
<li><a class="reference internal" href="#index-23">Installation of NeXus requirements (optional)</a></li>
|
||||
<li><a class="reference internal" href="#index-24">ROOT</a></li>
|
||||
<li><a class="reference internal" href="#index-22">Installation of NeXus requirements (optional)</a></li>
|
||||
<li><a class="reference internal" href="#index-23">ROOT</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a class="reference internal" href="#index-25">musrfit</a><ul>
|
||||
<li><a class="reference internal" href="#index-26">musrfit build with automake</a></li>
|
||||
<li><a class="reference internal" href="#index-27">musrfit build with cmake</a></li>
|
||||
<li><a class="reference internal" href="#index-24">musrfit</a><ul>
|
||||
<li><a class="reference internal" href="#index-25">musrfit build with cmake</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a class="reference internal" href="#index-28">musredit</a></li>
|
||||
<li><a class="reference internal" href="#id13">musrgui (obsolate)</a></li>
|
||||
<li><a class="reference internal" href="#id14">Check the installation</a></li>
|
||||
<li><a class="reference internal" href="#index-26">musredit</a></li>
|
||||
<li><a class="reference internal" href="#id12">musrgui (obsolate)</a></li>
|
||||
<li><a class="reference internal" href="#id13">Check the installation</a></li>
|
||||
<li><a class="reference internal" href="#potential-problems">Potential Problems</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a class="reference internal" href="#mac-os-x-macos">Mac OS X / macOS</a><ul>
|
||||
<li><a class="reference internal" href="#requirements-macports">Requirements (MacPorts)</a><ul>
|
||||
<li><a class="reference internal" href="#index-30">Installation of NeXus requirements (optional)</a></li>
|
||||
<li><a class="reference internal" href="#index-31">ROOT</a></li>
|
||||
<li><a class="reference internal" href="#index-28">Installation of NeXus requirements (optional)</a></li>
|
||||
<li><a class="reference internal" href="#index-29">ROOT</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a class="reference internal" href="#requirements-fink">Requirements (Fink)</a><ul>
|
||||
<li><a class="reference internal" href="#index-33">Installation of NeXus requirements (optional)</a></li>
|
||||
<li><a class="reference internal" href="#index-34">ROOT</a></li>
|
||||
<li><a class="reference internal" href="#index-31">Installation of NeXus requirements (optional)</a></li>
|
||||
<li><a class="reference internal" href="#index-32">ROOT</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a class="reference internal" href="#index-35">musrfit</a><ul>
|
||||
<li><a class="reference internal" href="#index-36">musrfit build with automake</a></li>
|
||||
<li><a class="reference internal" href="#index-37">musrfit build with cmake</a></li>
|
||||
<li><a class="reference internal" href="#id28">musrfit last step of the installation</a></li>
|
||||
<li><a class="reference internal" href="#index-33">musrfit</a><ul>
|
||||
<li><a class="reference internal" href="#index-34">musrfit build with cmake</a></li>
|
||||
<li><a class="reference internal" href="#id26">musrfit last step of the installation</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><a class="reference internal" href="#index-38">musredit</a></li>
|
||||
<li><a class="reference internal" href="#index-35">musredit</a></li>
|
||||
<li><a class="reference internal" href="#musrgui-obsolete">musrgui (obsolete)</a></li>
|
||||
<li><a class="reference internal" href="#id30">Check the installation</a></li>
|
||||
<li><a class="reference internal" href="#id28">Check the installation</a></li>
|
||||
</ul>
|
||||
</li>
|
||||
</ul>
|
||||
@ -1481,12 +1315,12 @@ $ musrview test-histo-ROOT-NPP.msr
|
||||
<li class="right" >
|
||||
<a href="user-libs.html" title="Documentation of user libs (user functions)"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Tutorial for musrfit — musrfit 1.4.1 documentation</title>
|
||||
<title>Tutorial for musrfit — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="User manual" href="user-manual.html" />
|
||||
<link rel="prev" title="How to Cite musrfit?" href="cite.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="cite.html" title="How to Cite musrfit?"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -443,12 +443,12 @@ For a complete description please refer to the manuals of <a class="reference in
|
||||
<li class="right" >
|
||||
<a href="cite.html" title="How to Cite musrfit?"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>Documentation of user libs (user functions) — musrfit 1.4.1 documentation</title>
|
||||
<title>Documentation of user libs (user functions) — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="Setting up musrfit on Different Platforms" href="setup-standard.html" />
|
||||
<link rel="prev" title="User manual" href="user-manual.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="user-manual.html" title="User manual"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -662,12 +662,12 @@ K(m)&=\int_0^{\pi/2}\frac{\mathrm d\varphi}{\sqrt{1-m^2\sin^2{\varphi}}},\en
|
||||
<li class="right" >
|
||||
<a href="user-manual.html" title="User manual"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
@ -6,7 +6,7 @@
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
||||
|
||||
<title>User manual — musrfit 1.4.1 documentation</title>
|
||||
<title>User manual — musrfit 1.4.2 documentation</title>
|
||||
|
||||
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
|
||||
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
|
||||
@ -14,7 +14,7 @@
|
||||
<script type="text/javascript">
|
||||
var DOCUMENTATION_OPTIONS = {
|
||||
URL_ROOT: './',
|
||||
VERSION: '1.4.1',
|
||||
VERSION: '1.4.2',
|
||||
COLLAPSE_INDEX: false,
|
||||
FILE_SUFFIX: '.html',
|
||||
HAS_SOURCE: true
|
||||
@ -24,7 +24,7 @@
|
||||
<script type="text/javascript" src="_static/underscore.js"></script>
|
||||
<script type="text/javascript" src="_static/doctools.js"></script>
|
||||
<script type="text/javascript" src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
|
||||
<link rel="top" title="musrfit 1.4.1 documentation" href="index.html" />
|
||||
<link rel="top" title="musrfit 1.4.2 documentation" href="index.html" />
|
||||
<link rel="next" title="Documentation of user libs (user functions)" href="user-libs.html" />
|
||||
<link rel="prev" title="Tutorial for musrfit" href="tutorial.html" />
|
||||
</head>
|
||||
@ -41,7 +41,7 @@
|
||||
<li class="right" >
|
||||
<a href="tutorial.html" title="Tutorial for musrfit"
|
||||
accesskey="P">previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
@ -2238,12 +2238,12 @@ In case this cannot be ensured, the parallelization can be disabled by <em>̵
|
||||
<li class="right" >
|
||||
<a href="tutorial.html" title="Tutorial for musrfit"
|
||||
>previous</a> |</li>
|
||||
<li><a href="index.html">musrfit 1.4.1 documentation</a> »</li>
|
||||
<li><a href="index.html">musrfit 1.4.2 documentation</a> »</li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="footer">
|
||||
© Copyright 2018, Andreas Suter.
|
||||
Last updated on Jan 21, 2019.
|
||||
Last updated on Mar 08, 2019.
|
||||
Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.3.
|
||||
</div>
|
||||
</body>
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user