switched to HDF4/HDF5 template loading in order to simplify the code.

src/classes/PRunDataHandler.cpp

@@ -2248,172 +2248,8 @@ Bool_t PRunDataHandler::ReadNexusFile()
     }
 
     if (idf == 1) { // HDF4 IDF V1
-      // get header information
+      if (!ReadNexusFileIdf1(nxs_file))
-
-      // get/set laboratory
-      sstr = "n/a";
-      if (nxs_file->HasDataset("/run/lab"))
-        sstr = nxs_file->GetDataset<std::string>("/run/lab").GetData()[0];
-      runData.SetLaboratory(sstr);
-
-      // get/set beamline
-      sstr = "n/a";
-      if (nxs_file->HasDataset("/run/beamline"))
-        sstr = nxs_file->GetDataset<std::string>("/run/beamline").GetData()[0];
-      runData.SetBeamline(sstr);
-
-      // get/set instrument
-      sstr = "n/a";
-      if (nxs_file->HasDataset("/run/instrument/name"))
-        sstr = nxs_file->GetDataset<std::string>("/run/instrument/name").GetData()[0];
-      runData.SetInstrument(sstr);
-
-      // get/set run title
-      str = "n/a";
-      if (nxs_file->HasDataset("/run/title"))
-        sstr = nxs_file->GetDataset<std::string>("/run/title").GetData()[0];
-      runData.SetRunTitle(sstr);
-
-      // get/set run number
-      ival = -1;
-      if (nxs_file->HasDataset("/run/number"))
-        ival = nxs_file->GetDataset<int>("/run/number").GetData()[0];
-      runData.SetRunNumber(ival);
-
-      // get/set temperature
-      dval = PMUSR_UNDEFINED;
-      sstr = "n/a";
-      if (nxs_file->HasDataset("/run/sample/temperature")) {
-        auto tmp_ds = nxs_file->GetDataset<float>("/run/sample/temperature");
-        dval = tmp_ds.GetData()[0];
-        if (tmp_ds.HasAttribute("units"))
-          sstr = std::any_cast<std::string>(tmp_ds.GetAttribute("units"));
-        if (sstr == "Celcius")
-          dval += 273.16;
-      }
-      runData.SetTemperature(0, dval, 0.0);
-
-      // get/set field
-      dval = PMUSR_UNDEFINED;
-      sstr = "n/a";
-      factor = 1.0;
-      if (nxs_file->HasDataset("/run/sample/magnetic_field")) {
-        auto mag_ds = nxs_file->GetDataset<float>("/run/sample/magnetic_field");
-        dval = mag_ds.GetData()[0];
-        if (mag_ds.HasAttribute("units"))
-          sstr = std::any_cast<std::string>(mag_ds.GetAttribute("units"));
-        if (sstr == "Tesla")
-          factor = 1.0e4;
-      }
-      runData.SetField(dval*factor);
-
-      // get/set implantation energy
-      runData.SetEnergy(PMUSR_UNDEFINED);
-
-      // get/set moderator HV
-      runData.SetTransport(PMUSR_UNDEFINED);
-
-      // get/set RA HV's (LEM specific)
-      for (UInt_t i=0; i<4; i++)
-        runData.SetRingAnode(i, PMUSR_UNDEFINED);
-
-      // get/set setup
-      sstr = "n/a";
-      if (nxs_file->HasDataset("/run/notes"))
-        sstr = nxs_file->GetDataset<std::string>("/run/notes").GetData()[0];
-      runData.SetSetup(sstr);
-
-      // get/set sample
-      sstr = "n/a";
-      if (nxs_file->HasDataset("/run/sample/name"))
-        sstr = nxs_file->GetDataset<std::string>("/run/sample/name").GetData()[0];
-      runData.SetSample(sstr);
-
-      // get/set orientation
-      runData.SetOrientation("??");
-
-      // get/set time resolution (ns)
-      dval = PMUSR_UNDEFINED;
-      sstr = "n/a";
-      factor = 1.0;
-      if (nxs_file->HasDataset("/run/histogram_data_1/resolution")) {
-        auto res_ds = nxs_file->GetDataset<int>("/run/histogram_data_1/resolution");
-        dval = res_ds.GetData()[0];
-        if (res_ds.HasAttribute("units"))
-          sstr = std::any_cast<std::string>(res_ds.GetAttribute("units"));
-        if ((sstr == "picoseconds") || (sstr == "pico.seconds"))
-          factor = 1.0e-3; // ps -> ns
-      }
-      runData.SetTimeResolution(dval*factor);
-
-      // get/set start/stop time
-      sstr = "n/a";
-      TString date{"n/a"}, time{"n/a"};
-      if (nxs_file->HasDataset("/run/start_time"))
-        sstr = nxs_file->GetDataset<std::string>("/run/start_time").GetData()[0];
-      str = sstr;
-      SplitTimeDate(str, time, date, ok);
-      if (ok) {
-        runData.SetStartTime(time);
-        runData.SetStartDate(date);
-      }
-
-      sstr = "n/a";
-      date = "n/a";
-      time = "n/a";
-      if (nxs_file->HasDataset("/run/stop_time"))
-        sstr = nxs_file->GetDataset<std::string>("/run/stop_time").GetData()[0];
-      str = sstr;
-      SplitTimeDate(str, time, date, ok);
-      if (ok) {
-        runData.SetStopTime(time);
-        runData.SetStopDate(date);
-      }
-
-      // data with its metadata
-      int t0_bin{-1}, fgb{-1}, lgb{-1}, noOfHistos{-1}, histoLength{-1};
-      if (nxs_file->HasDataset("/run/histogram_data_1/counts")) {
-        auto count_ds = nxs_file->GetDataset<int>("/run/histogram_data_1/counts");
-        auto count = count_ds.GetData();
-        // get all necessary attributes
-        if (count_ds.HasAttribute("t0_bin"))
-          t0_bin = std::any_cast<int>(count_ds.GetAttribute("t0_bin"));
-        if (count_ds.HasAttribute("first_good_bin"))
-          fgb = std::any_cast<int>(count_ds.GetAttribute("first_good_bin"));
-        if (count_ds.HasAttribute("last_good_bin"))
-          lgb = std::any_cast<int>(count_ds.GetAttribute("last_good_bin"));
-        if (count_ds.HasAttribute("number"))
-          noOfHistos = std::any_cast<int>(count_ds.GetAttribute("number"));
-        if (count_ds.HasAttribute("length"))
-          histoLength = std::any_cast<int>(count_ds.GetAttribute("length"));
-        if (count.size() != noOfHistos*histoLength) {
-          std::cerr << std::endl << "**ERROR** nxH4::PNeXus data size error! count.size()=" << count.size() << ", #histos=" << noOfHistos << ", length=" << histoLength << "." << std::endl;
-          return false;
-        }
-        // fill dataSet
-        PDoubleVector data;
-        for (unsigned int i=0; i<noOfHistos; i++) {
-          dataSet.Clear();
-          dataSet.SetHistoNo(i+1); // i.e. histo numbers start with 1
-          dataSet.SetTimeZeroBin(t0_bin);
-          dataSet.SetFirstGoodBin(fgb);
-          dataSet.SetLastGoodBin(lgb);
-          for (unsigned j=0; j<histoLength; j++)
-            data.push_back(count[i*histoLength+j]);
-          dataSet.SetData(data);
-          runData.SetDataSet(dataSet);
-          data.clear();
-        }
-
-        // keep run name from the msr-file
-        runData.SetRunName(fRunName);
-
-        // keep the information
-        fData.push_back(runData);
-      } else { // no data found
-        std::cerr << std::endl << "**ERROR** nxH4::PNeXus couldn't obtain data: '/run/histogram_data_1/counts' is missing." << std::endl;
         return false;
-      }
     } else { // HDF4 IDF V2
       // not yet implemented
     }
@@ -2442,7 +2278,8 @@ Bool_t PRunDataHandler::ReadNexusFile()
     }
 
     if (idf == 1) { // HDF5 IDF V1
-      // not yet implemented
+      if (!ReadNexusFileIdf1(nxs_file))
+        return false;
     } else { // HDF5 IDF V2
       // not yet implemented
     }

src/include/PRunDataHandler.h

@@ -30,6 +30,10 @@
 #ifndef _PRUNDATAHANDLER_H_
 #define _PRUNDATAHANDLER_H_
 
+#include <any>
+#include <iostream>
+#include <string>
+
 #include <TString.h>
 
 #include "PMusr.h"
@@ -433,6 +437,8 @@ class PRunDataHandler
     virtual Bool_t FileExistsCheck(const TString fileName);
     virtual Bool_t ReadRootFile();
     virtual Bool_t ReadNexusFile();
+    template <typename T> Bool_t ReadNexusFileIdf1(T& nxs_file);
+    template <typename T> Bool_t ReadNexusFileIdf2(T& nxs_file);
     virtual Bool_t ReadWkmFile();
     virtual Bool_t ReadPsiBinFile();
     virtual Bool_t ReadMudFile();
@@ -464,4 +470,211 @@ class PRunDataHandler
     virtual TString GetYear(Int_t month);
 };
 
+//--------------------------------------------------------------------------
+// ReadNexusFileIdf1 (private)
+//--------------------------------------------------------------------------
+/**
+ * <p>Reads a NeXus file with IDF version 1 format.
+ *
+ * <p>Extracts run metadata (laboratory, beamline, instrument, run title,
+ * run number, temperature, field, sample info, time resolution, start/stop
+ * times) and histogram data from the NeXus file structure.
+ *
+ * @tparam T NeXus file handler type (std::unique_ptr<nxH4::PNeXus> and std::unique_ptr<nxH5::PNeXus>)
+ * @param nxs_file reference to the NeXus file handler
+ *
+ * <b>return:</b>
+ * - true at successful reading,
+ * - otherwise false.
+ */
+template <typename T>
+Bool_t PRunDataHandler::ReadNexusFileIdf1(T& nxs_file)
+{
+  PRawRunData    runData;
+  PRawRunDataSet dataSet;
+  TString str;
+  std::string sstr;
+  Int_t ival;
+  Double_t dval, factor;
+  bool ok;
+
+  // get header information
+
+  // get/set laboratory
+  sstr = "n/a";
+  if (nxs_file->HasDataset("/run/lab"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/lab").GetData()[0];
+  runData.SetLaboratory(sstr);
+
+  // get/set beamline
+  sstr = "n/a";
+  if (nxs_file->HasDataset("/run/beamline"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/beamline").GetData()[0];
+  runData.SetBeamline(sstr);
+
+  // get/set instrument
+  sstr = "n/a";
+  if (nxs_file->HasDataset("/run/instrument/name"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/instrument/name").GetData()[0];
+  runData.SetInstrument(sstr);
+
+  // get/set run title
+  str = "n/a";
+  if (nxs_file->HasDataset("/run/title"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/title").GetData()[0];
+  runData.SetRunTitle(sstr);
+
+  // get/set run number
+  ival = -1;
+  if (nxs_file->HasDataset("/run/number"))
+    ival = nxs_file->template GetDataset<int>("/run/number").GetData()[0];
+  runData.SetRunNumber(ival);
+
+  // get/set temperature
+  dval = PMUSR_UNDEFINED;
+  sstr = "n/a";
+  if (nxs_file->HasDataset("/run/sample/temperature")) {
+    auto tmp_ds = nxs_file->template GetDataset<float>("/run/sample/temperature");
+    dval = tmp_ds.GetData()[0];
+    if (tmp_ds.HasAttribute("units"))
+      sstr = std::any_cast<std::string>(tmp_ds.GetAttribute("units"));
+    if (sstr == "Celcius")
+      dval += 273.16;
+  }
+  runData.SetTemperature(0, dval, 0.0);
+
+  // get/set field
+  dval = PMUSR_UNDEFINED;
+  sstr = "n/a";
+  factor = 1.0;
+  if (nxs_file->HasDataset("/run/sample/magnetic_field")) {
+    auto mag_ds = nxs_file->template GetDataset<float>("/run/sample/magnetic_field");
+    dval = mag_ds.GetData()[0];
+    if (mag_ds.HasAttribute("units"))
+      sstr = std::any_cast<std::string>(mag_ds.GetAttribute("units"));
+    if (sstr == "Tesla")
+      factor = 1.0e4;
+  }
+  runData.SetField(dval*factor);
+
+  // get/set implantation energy
+  runData.SetEnergy(PMUSR_UNDEFINED);
+
+  // get/set moderator HV
+  runData.SetTransport(PMUSR_UNDEFINED);
+
+  // get/set RA HV's (LEM specific)
+  for (UInt_t i=0; i<4; i++)
+    runData.SetRingAnode(i, PMUSR_UNDEFINED);
+
+  // get/set setup
+  sstr = "n/a";
+  if (nxs_file->HasDataset("/run/notes"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/notes").GetData()[0];
+  runData.SetSetup(sstr);
+
+  // get/set sample
+  sstr = "n/a";
+  if (nxs_file->HasDataset("/run/sample/name"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/sample/name").GetData()[0];
+  runData.SetSample(sstr);
+
+  // get/set orientation
+  runData.SetOrientation("??");
+
+  // get/set time resolution (ns)
+  dval = PMUSR_UNDEFINED;
+  sstr = "n/a";
+  factor = 1.0;
+  if (nxs_file->HasDataset("/run/histogram_data_1/resolution")) {
+    auto res_ds = nxs_file->template GetDataset<int>("/run/histogram_data_1/resolution");
+    dval = res_ds.GetData()[0];
+    if (res_ds.HasAttribute("units"))
+      sstr = std::any_cast<std::string>(res_ds.GetAttribute("units"));
+    if ((sstr == "picoseconds") || (sstr == "pico.seconds"))
+      factor = 1.0e-3; // ps -> ns
+  }
+  runData.SetTimeResolution(dval*factor);
+
+  // get/set start/stop time
+  sstr = "n/a";
+  TString date{"n/a"}, time{"n/a"};
+  if (nxs_file->HasDataset("/run/start_time"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/start_time").GetData()[0];
+  str = sstr;
+  SplitTimeDate(str, time, date, ok);
+  if (ok) {
+    runData.SetStartTime(time);
+    runData.SetStartDate(date);
+  }
+
+  sstr = "n/a";
+  date = "n/a";
+  time = "n/a";
+  if (nxs_file->HasDataset("/run/stop_time"))
+    sstr = nxs_file->template GetDataset<std::string>("/run/stop_time").GetData()[0];
+  str = sstr;
+  SplitTimeDate(str, time, date, ok);
+  if (ok) {
+    runData.SetStopTime(time);
+    runData.SetStopDate(date);
+  }
+
+  // data with its metadata
+  int t0_bin{-1}, fgb{-1}, lgb{-1}, noOfHistos{-1}, histoLength{-1};
+  if (nxs_file->HasDataset("/run/histogram_data_1/counts")) {
+    auto count_ds = nxs_file->template GetDataset<int>("/run/histogram_data_1/counts");
+    auto count = count_ds.GetData();
+    // get all necessary attributes
+    if (count_ds.HasAttribute("t0_bin"))
+      t0_bin = std::any_cast<int>(count_ds.GetAttribute("t0_bin"));
+    if (count_ds.HasAttribute("first_good_bin"))
+      fgb = std::any_cast<int>(count_ds.GetAttribute("first_good_bin"));
+    if (count_ds.HasAttribute("last_good_bin"))
+      lgb = std::any_cast<int>(count_ds.GetAttribute("last_good_bin"));
+    if (count_ds.HasAttribute("number"))
+      noOfHistos = std::any_cast<int>(count_ds.GetAttribute("number"));
+    if (count_ds.HasAttribute("length"))
+      histoLength = std::any_cast<int>(count_ds.GetAttribute("length"));
+    if (static_cast<int>(count.size()) != noOfHistos*histoLength) {
+      std::cerr << std::endl << "**ERROR** PNeXus data size error! count.size()=" << count.size() << ", #histos=" << noOfHistos << ", length=" << histoLength << "." << std::endl;
+      return false;
+    }
+    // fill dataSet
+    PDoubleVector data;
+    for (int i=0; i<noOfHistos; i++) {
+      dataSet.Clear();
+      dataSet.SetHistoNo(i+1); // i.e. histo numbers start with 1
+      dataSet.SetTimeZeroBin(t0_bin);
+      dataSet.SetFirstGoodBin(fgb);
+      dataSet.SetLastGoodBin(lgb);
+      for (int j=0; j<histoLength; j++)
+        data.push_back(count[i*histoLength+j]);
+      dataSet.SetData(data);
+      runData.SetDataSet(dataSet);
+      data.clear();
+    }
+
+    // keep run name from the msr-file
+    runData.SetRunName(fRunName);
+
+    // keep the information
+    fData.push_back(runData);
+  } else { // no data found
+    std::cerr << std::endl << "**ERROR** PNeXus couldn't obtain data: '/run/histogram_data_1/counts' is missing." << std::endl;
+    return false;
+  }
+
+  return true;
+}
+
+//--------------------------------------------------------------------------
+// ReadNexusFileIdf2 (private)
+//--------------------------------------------------------------------------
+template <typename T>
+Bool_t PRunDataHandler::ReadNexusFileIdf2(T& nxs_file)
+{
+  return true;
+}
+
 #endif //  _PRUNDATAHANDLER_H_