Added a -s option to mlog2db (analogous to musrfit)
This commit is contained in:
Bastian M. Wojek
55
src/external/scripts/mlog2db
vendored
55
src/external/scripts/mlog2db
vendored
@ -11,11 +11,11 @@ if [ "$#" -lt 2 ] ; then
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"musrfit-mlog to db converter"
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USAGE: mlog2db FIRSTRUN# LASTRUN# EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
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USAGE: mlog2db FIRSTRUN# LASTRUN# EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k | -s]
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OR
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mlog2db \[SPACE SEPARATED LIST OF RUNS\] EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
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mlog2db \[SPACE SEPARATED LIST OF RUNS\] EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k | -s]
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OR
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mlog2db RUNLISTFILE EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
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mlog2db RUNLISTFILE EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k | -s]
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This small script converts subsequent musrfit output files (mlog) into one db file using bash/awk.
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@ -60,7 +60,9 @@ template for the first musrfit input file. The results of the fits will be writt
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For keeping the MINUIT2 output files after calling musrfit, i.e. invoke musrfit with the option "--keep-mn2-output" just pass the option "-k" to mlog2db. If you pass this option to mlog2db but do not fit any data, the option will just be ignored.
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If your .mlog files do not have an extension as specified above like "200.mlog" you have to call the script as in the following example.
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If the script should be used as "msr2db", i.e. using the files with the extension .msr as output from musrfit after calling it with the option "--swap-msr-mlog", pass the option "-s" to mlog2db.
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If your musrfit output files do not have an extension as specified above like "200.mlog" you have to call the script as in the following example.
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Example 5:
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mlog2db 200 220 "" -oABC.db fit-199
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@ -209,6 +211,20 @@ else
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fi
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done
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# Check if the swap-option of musrfit should be used -> then the msr-files will be used as output of musrfit instead of the mlog-files
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MUSRFITPARAM=""
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INPUTEXT=msr
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OUTPUTEXT=mlog
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for PAR in "$@"
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do
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if [ "$PAR" == "-s" ]; then
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MUSRFITPARAM="-s"
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INPUTEXT=mlog
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OUTPUTEXT=msr
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break
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fi
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done
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if [ "$TEMP" != "" ]; then # runs should be fitted using musrfit
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# Check for musrfit on the PATH and if found continue with searching the fit-template
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@ -220,10 +236,10 @@ else
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echo
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exit 1
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else
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if [ -r $TEMP$EXTENSION.mlog ]; then
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TEMPLATE=$TEMP$EXTENSION.mlog
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elif [ -r $TEMP$EXTENSION.msr ]; then
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TEMPLATE=$TEMP$EXTENSION.msr
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if [ -r $TEMP$EXTENSION.$OUTPUTEXT ]; then
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TEMPLATE=$TEMP$EXTENSION.$OUTPUTEXT
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elif [ -r $TEMP$EXTENSION.$INPUTEXT ]; then
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TEMPLATE=$TEMP$EXTENSION.$INPUTEXT
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fi
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fi
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fi
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@ -238,7 +254,7 @@ else
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if [ "$TEMP" != "" ]; then # if fitting should be done
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if [ "$TEMPLATE" == "" ]; then
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echo
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echo ">> mlog2db: The specified musrfit template files "$TEMP$3".mlog and $TEMP$3.msr do not exist!"
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echo ">> mlog2db: The specified musrfit template files $TEMP$3.mlog and $TEMP$3.msr do not exist!"
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echo
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exit 1
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fi
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@ -262,11 +278,10 @@ else
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}' $TEMPLATE
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fi
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MUSRFITPARAM=""
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for PAR in "$@"
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do
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if [ "$PAR" == "-k" ]; then
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MUSRFITPARAM="-k"
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MUSRFITPARAM="-k $MUSRFITPARAM"
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break
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fi
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done
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@ -291,13 +306,13 @@ else
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print $0 >> nextinput
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}
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else print $0 >> nextinput
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}' $COUNT$EXTENSION.mlog
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}' $COUNT$EXTENSION.$OUTPUTEXT
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fi
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fi
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if [ ! -r $COUNT$EXTENSION.mlog ]; then
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if [ ! -r $COUNT$EXTENSION.$OUTPUTEXT ]; then
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echo
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echo ">> mlog2db: The specified musrfit output file $COUNT$EXTENSION.mlog does not exist!"
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echo ">> mlog2db: The specified musrfit output file $COUNT$EXTENSION.$OUTPUTEXT does not exist!"
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echo
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exit 1
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fi
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@ -315,7 +330,7 @@ else
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if [ "$NOSUMMARY" -eq 0 ]; then
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if [ -d $SUMMDIR ]; then
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# extract runnumber from mlog-file
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# extract runnumber from mlog/msr-file
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RUNNUMBER=$( awk '{
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if(NR==1) X=0
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if($1 ~ /^RUN/ && X==0) {
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@ -324,9 +339,9 @@ else
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if(runNumber[1] ~ /lem/ && runNumber[2] == "his") {print substr(runNumber[3],1,4) }
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X=1
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}
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}' $COUNT$EXTENSION.mlog )
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}' $COUNT$EXTENSION.$OUTPUTEXT )
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# extract runyear from mlog-file in case of LEM-data
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# extract runyear from mlog/msr-file in case of LEM-data
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RUNYEAR=$( awk '{
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if(NR==1) X=0
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if($1 ~ /^RUN/ && X==0) {
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@ -335,7 +350,7 @@ else
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else print "XX"
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X=1
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}
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}' $COUNT$EXTENSION.mlog )
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}' $COUNT$EXTENSION.$OUTPUTEXT )
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if [ "$RUNYEAR" != "XX" ]; then # in case of LEM-data search the summary-file
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SUMMFILE=$SUMMDIR/20$RUNYEAR/lem$RUNYEAR\_$RUNNUMBER.summ
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@ -359,7 +374,7 @@ else
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if [ "${CUR_PAR:0:2}" == "-o" ]; then
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if [ "$CUR_PAR" == "-o" ]; then
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if [ "$l" -ne "$LAST_OPT_PAR" ] && [ "$NEXT_PAR" != "noheader" ] && [ "$NEXT_PAR" != "nosummary" ] \
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&& [ "${NEXT_PAR:0:3}" != "fit" ] && [ "$NEXT_PAR" != "-k" ]; then
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&& [ "${NEXT_PAR:0:3}" != "fit" ] && [ "$NEXT_PAR" != "-k" ] && [ "$NEXT_PAR" != "-s" ]; then
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OUTFILE=$NEXT_PAR
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break
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else
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@ -577,6 +592,6 @@ else
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if("'"$q"'" == "'"$LASTRUN"'") print "\n" >> outfile
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}
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}
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}' $COUNT$EXTENSION.mlog
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}' $COUNT$EXTENSION.$OUTPUTEXT
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done
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fi
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