LMU/musrfit
5
0
Fork 0
Code Issues 6 Pull Requests Actions Packages Projects Releases 4 Activity

a more fexible handling of filename list and run list in any2many (see MUSR-166). Still far from production

Browse Source
This commit is contained in:
nemu
2011-01-13 12:10:30 +00:00
parent f9a310f2fa
commit 826ad1efa9
4 changed files with 180 additions and 167 deletions
Download Patch File Download Diff File Expand all files Collapse all files

144
src/any2many.cpp
View File

@ -52,65 +52,61 @@ void any2many_syntax()
{
cout << endl << "usage: any2many [--help] : will show this help.";
cout << endl << " any2many --version : will show the svn version.";
cout << endl << " any2many -I <filename> | -i <runList-input> -c <convert-options> ";
cout << endl << " [-p <output-path>] [-o <output>] [-y <year>]";
cout << endl << " [-t <in-template> <out-template>] [-s] [-rebin <n>]";
cout << endl << " [-z <compressed>]";
cout << endl << " -I <filename> : where <filename> is a single file name,";
cout << endl << " e.g. 2010/lem10_his_0111.root, but not starting with a '-'";
cout << endl << " -i <runList-input> : where <runList-input> is a list of run numbers";
cout << endl << " separated by spaces ' ' of the form: <run1> <run2> <run3>";
cout << endl << " etc., or a sequence of runs <runStart>-<runEnd>, e.g. 111-222";
cout << endl << " any2many -f <filenameList-input> | -r <runList-input>";
cout << endl << " -c <convert-options> [-p <output-path>]";
cout << endl << " [-y <year>] [-t <in-template> <out-template>] [-s]";
cout << endl << " [-rebin <n>] [-z <compressed>]";
cout << endl << " -f <filenameList-input> : where <filenameList-input> is space";
cout << endl << " separeted a list of file names (not starting with a '-'),";
cout << endl << " e.g. 2010/lem10_his_0111.root 2010/lem10_his_0112.root";
cout << endl << " -r <runList-input> : where <runList-input> is a list of run numbers";
cout << endl << " separated by spaces ' ' of the form: <run1> <run2> <run3>";
cout << endl << " etc., or a sequence of runs <runStart>-<runEnd>, e.g. 111-222";
cout << endl << " -c <convert-options> : <inFormat> <outFormat>";
cout << endl << " <inFormat> : input data file format. Supported formats are:";
cout << endl << " PSI-BIN, ROOT (LEM), MUD, NeXuS, PSI-MDU, WKM";
cout << endl << " PSI-BIN, ROOT (LEM), MUD, NeXuS, PSI-MDU, WKM";
cout << endl << " <outFormat> : ouput data file format. Supported formats are:";
cout << endl << " PSI-BIN, ROOT (LEM), MUD, NeXuS, MDU, WKM, ASCII";
cout << endl << " PSI-BIN, ROOT (LEM), MUD, NeXuS, WKM, ASCII";
cout << endl << " -p <output-path> : where <output-path> is the output path for the";
cout << endl << " converted files. If nothing is given, the current directory";
cout << endl << " will be used, unless the option '-s' is used.";
cout << endl << " -o <output> : where <output> is a single output file name. If <input>";
cout << endl << " is a list of runs, this option should be omitted since the file";
cout << endl << " names are generated according to the run number and the file";
cout << endl << " format, e.g. 111 -> lemyy_his_0111.root, where yy is the";
cout << endl << " current year.";
cout << endl << " converted files. If nothing is given, the current directory";
cout << endl << " will be used, unless the option '-s' is used.";
cout << endl << " -y <year> : if the option -y is used, here a year in the form 'yy' can";
cout << endl << " be given, if this is the case, any automatic file name";
cout << endl << " generation needs a year, this number will be used.";
cout << endl << " be given, if this is the case, any automatic file name";
cout << endl << " generation needs a year, this number will be used.";
cout << endl << " -t <in-template> <out-template> : ";
cout << endl << " <in-/out-template> : template file name. Needed for run-lists in";
cout << endl << " order to generate the proper file names. The following template";
cout << endl << " tags can be used: [yy] for year, and [rrrr] for the run number.";
cout << endl << " If the run number tag is used, the number of 'r' will give the";
cout << endl << " number of digits used with leading zeros, e.g. [rrrrrr] and run";
cout << endl << " number 123 will result in 000123. The same is true for the";
cout << endl << " year, i.e. [yyyy] will result in something like 1999.";
cout << endl << " order to generate the proper file names. The following template";
cout << endl << " tags can be used: [yy] for year, and [rrrr] for the run number.";
cout << endl << " If the run number tag is used, the number of 'r' will give the";
cout << endl << " number of digits used with leading zeros, e.g. [rrrrrr] and run";
cout << endl << " number 123 will result in 000123. The same is true for the";
cout << endl << " year, i.e. [yyyy] will result in something like 1999.";
cout << endl << " -s : with this option the output data file will be sent to the stdout.";
cout << endl << " -rebin <n> : where <n> is the number of bins to be packed";
cout << endl << " -z [g|b] <compressed> : where <compressed> is the output file name";
cout << endl << " (without extension) of the compressed data collection, and";
cout << endl << " 'g' will result in .tar.gz, and 'b' in .tar.bz2 files.";
cout << endl << " (without extension) of the compressed data collection, and";
cout << endl << " 'g' will result in .tar.gz, and 'b' in .tar.bz2 files.";
cout << endl;
cout << endl << " If the output option '-o' is missing, the output file name will be";
cout << endl << " generated according to the input data file name, and the output data";
cout << endl << " format.";
cout << endl;
cout << endl << "examples:" << endl;
cout << endl << " any2many -I 2010/lem10_his_0123.root -c ROOT ASCII -rebin 25";
cout << endl << " any2many -f 2010/lem10_his_0123.root -c ROOT ASCII -rebin 25";
cout << endl << " Will take the LEM ROOT file '2010/lem10_his_0123.root' rebin it with 25";
cout << endl << " and convert it to ASCII. The output file name will be";
cout << endl << " lem10_his_0123.ascii, and the file will be saved in the current directory." << endl;
cout << endl << " any2many -i 123 137 -c PSI-BIN MUD -t d[yyyy]/deltat_tdc_gps_[rrrr].bin \\";
cout << endl << " any2many -r 123 137 -c PSI-BIN MUD -t d[yyyy]/deltat_tdc_gps_[rrrr].bin \\";
cout << endl << " [rrrrrr].msr -y 2001";
cout << endl << " Will take the run 123 and 137, will generate the input file names:";
cout << endl << " d2001/deltat_tdc_gps_0123.bin and d2001/deltat_tdc_gps_0137.bin, and";
cout << endl << " output file names 000123.msr and 000137.msr" << endl;
cout << endl << " any2many -i 100-117 -c PSI-MDU ASCII -t d[yyyy]/deltat_tdc_alc_[rrrr].mdu \\";
cout << endl << " any2many -r 100-117 -c PSI-MDU ASCII -t d[yyyy]/deltat_tdc_alc_[rrrr].mdu \\";
cout << endl << " [rrr].ascii -y 2011 -s";
cout << endl << " Will take the runs 100 through 117 and convert the PSI-MDU input files to";
cout << endl << " ASCII output and instead of saving them into a file, they will be spit to";
cout << endl << " the standard output." << endl;
cout << endl << " any2many -i 100-117 -c NEXUS ROOT -t d[yyyy]/psi_gps_[rrrr].nexus \\";
cout << endl << " any2many -r 100-117 -c NEXUS ROOT -t d[yyyy]/psi_gps_[rrrr].nexus \\";
cout << endl << " psi_[yyyy]_gps_[rrrr].root -z b psi_gps_run_100to117";
cout << endl << " Will take the runs 100 through 117 and convert the PSI-NEXUS input files";
cout << endl << " to ROOT output. Afterwards these new files will be collected in a";
@ -150,7 +146,6 @@ int main(int argc, char *argv[])
outputFormat.push_back("root");
outputFormat.push_back("mud");
outputFormat.push_back("nexus");
outputFormat.push_back("psi-mdu");
outputFormat.push_back("wkm");
outputFormat.push_back("ascii");
@ -185,7 +180,7 @@ int main(int argc, char *argv[])
for (int i=1; i<argc; i++) {
// handle year option
if (strstr(argv[i], "-y")) {
if (!strcmp(argv[i], "-y")) {
if (i+1 < argc) {
ival=0;
status = sscanf(argv[i+1], "%d", &ival);
@ -204,27 +199,33 @@ int main(int argc, char *argv[])
}
// handle standard output option '-s'
if (strstr(argv[i], "-s"))
if (!strcmp(argv[i], "-s"))
info.useStandardOutput = true;
// set input option tag
if (strstr(argv[i], "-I")) {
if (!strcmp(argv[i], "-f")) {
if (i+1 < argc) {
if (argv[i+1][0] == '-') { // something wrong
cerr << endl << ">> any2many **ERROR** found input option '-i' with filename " << argv[i+1] << ". This is not allowed." << endl;
show_syntax = true;
bool done = false;
int j = i+1;
do {
if (argv[j][0] == '-') { // assuming the next option is found
done = true;
} else {
info.inFileName.push_back(argv[j]);
j++; // shift input to the proper place
}
} while (!done && (j<argc));
i = j;
if (i >= argc) // make sure that counter is still in range
break;
} else {
info.inFileName = argv[i+1];
i++; // shift input to the proper place
}
} else {
cerr << endl << ">> any2many **ERROR** found input option '-I' without any arguments" << endl;
cerr << endl << ">> any2many **ERROR** found input option '-f' without any arguments" << endl;
show_syntax = true;
break;
}
}
if (strstr(argv[i], "-i")) {
if (!strcmp(argv[i], "-r")) {
if (i+1 < argc) {
// first check for run list sequence of the form <runStartNo>-<runEndNo>
int startNo, endNo;
@ -237,6 +238,7 @@ int main(int argc, char *argv[])
}
for (int j=startNo; j<=endNo; j++)
info.runList.push_back(j);
i += 2;
} else { // check for run list of the form <run1> <run2> ... <runN>
bool done = false;
int j = i+1;
@ -244,39 +246,31 @@ int main(int argc, char *argv[])
status = sscanf(argv[j], "%d", &ival);
if (status == 1) {
info.runList.push_back(ival);
j++;
} else {
done = true;
}
j++;
} while (!done && (j<argc));
i = j;
if (i >= argc) // make sure that counter is still in range
break;
}
} else {
cerr << endl << ">> any2many **ERROR** found input option '-i' without any arguments" << endl;
cerr << endl << ">> any2many **ERROR** found input option '-r' without any arguments" << endl;
show_syntax = true;
break;
}
// check if any valid input option was found
if ((info.inFileName.Length() == 0) && (info.runList.size() == 0)) {
cerr << endl << ">> any2many **ERROR** found input option '-i' without any valid arguments" << endl;
show_syntax = true;
break;
}
}
// set output option tag
if (strstr(argv[i], "-o")) {
if (i+1 < argc) {
info.outFileName = argv[i+1];
} else {
cerr << endl << ">> any2many **ERROR** found output option '-o' without any argument." << endl;
if (info.runList.size() == 0) {
cerr << endl << ">> any2many **ERROR** found input option '-r' without any valid arguments" << endl;
show_syntax = true;
break;
}
}
// set convert option tag
if (strstr(argv[i], "-c")) {
if (!strcmp(argv[i], "-c")) {
bool found = false;
string sval;
if (i+2 < argc) {
@ -317,7 +311,7 @@ int main(int argc, char *argv[])
}
// filter output path name flag
if (strstr(argv[i], "-p")) {
if (!strcmp(argv[i], "-p")) {
if (i+1 < argc) {
info.outPath = argv[i+1];
} else {
@ -328,7 +322,7 @@ int main(int argc, char *argv[])
}
// filter out rebinning option
if (strstr(argv[i], "-rebin")) {
if (!strcmp(argv[i], "-rebin")) {
if (i+1 < argc) {
status = sscanf(argv[i+1], "%d", &ival);
if (status == 1) {
@ -346,7 +340,7 @@ int main(int argc, char *argv[])
}
// filter out the input/output file template
if (strstr(argv[i], "-t")) {
if (!strcmp(argv[i], "-t")) {
if (i+2 < argc) {
if ((argv[i+1][0] == '-') || (argv[i+2][0] == '-')) {
cerr << endl << ">> any2many **ERROR** found invalid template in option '-t'" << endl;
@ -364,7 +358,7 @@ int main(int argc, char *argv[])
}
// filter out if compression is whished
if (strstr(argv[i], "-z")) {
if (!strcmp(argv[i], "-z")) {
if (i+2 < argc) {
if ((argv[i+1][0] == '-') || (argv[i+2][0] == '-')) {
cerr << endl << ">> any2many **ERROR** found invalid template in option '-t'" << endl;
@ -390,13 +384,23 @@ int main(int argc, char *argv[])
}
}
// make sure that either a filenameList or a runList has been provided
if ((info.inFileName.size()==0) && (info.runList.size()==0)) {
cerr << endl << ">> any2many **ERROR** neither a input filename list, nor a run list was given." << endl;
show_syntax = true;
}
// make sure that in/out formats are given
if ((info.inFormat.Length() == 0) || (info.outFormat.Length() == 0)) {
cerr << endl << ">> any2many **ERROR** conversion information is missing." << endl;
show_syntax = true;
}
/*
cout << endl << "debug> info.year='" << info.year << "', info.year.length()=" << info.year.Length();
cout << endl << "debug> info.useStandardOutput=" << info.useStandardOutput;
cout << endl << "debug> info.inFormat=" << info.inFormat;
cout << endl << "debug> info.outFormat=" << info.outFormat;
cout << endl << "debug> info.outFileName=" << info.outFileName;
cout << endl << "debug> info.inFileName=" << info.inFileName;
cout << endl << "debug> info.runList=";
for (unsigned int i=0; i<info.runList.size(); i++)
cout << info.runList[i] << ", ";
@ -406,9 +410,9 @@ cout << endl << "debug> info.inTemplate=" << info.inTemplate;
cout << endl << "debug> info.outTemplate=" << info.outTemplate;
cout << endl << "debug> info.compressionTag=" << info.compressionTag;
cout << endl << "debug> info.compressFileName=" << info.compressFileName;
cout << endl << "debug> info.outFileList=";
for (unsigned int i=0; i<info.outFileList.size(); i++)
cout << info.outFileList[i] << ", ";
cout << endl << "debug> info.inFileName=";
for (unsigned int i=0; i<info.inFileName.size(); i++)
cout << info.inFileName[i] << ", ";
cout << endl;
*/