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removed debug option from musrfit

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nemu
2009-05-28 05:41:37 +00:00
parent b257bb6c77
commit 80d0579ec6
1 changed files with 6 additions and 181 deletions
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187
src/musrfit.cpp
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@ -57,8 +57,7 @@ using namespace std;
*/
void musrfit_syntax()
{
cout << endl << "usage: musrfit [<msr-file> [-k, --keep-mn2-ouput] [-c, --chisq-only]";
cout << endl << " [--debug] [--dump <type>]] |";
cout << endl << "usage: musrfit [<msr-file> [-k, --keep-mn2-ouput] [-c, --chisq-only] [--dump <type>] |";
cout << endl << " --version | --help";
cout << endl << " <msr-file>: msr input file";
cout << endl << " 'musrfit <msr-file>' will execute musrfit";
@ -71,7 +70,6 @@ void musrfit_syntax()
cout << endl << " -c, --chisq-only: instead of fitting the data, chisq is just calculated";
cout << endl << " once and the result is set to the stdout. This feature is useful";
cout << endl << " to adjust initial parameters.";
cout << endl << " --debug is used to print additional infos";
cout << endl << " --dump <type> is writing a data file with the fit data and the theory";
cout << endl << " <type> can be 'ascii', 'root'" << endl;
cout << endl << " At the end of a fit, musrfit writes the fit results into an <mlog-file> and";
@ -80,167 +78,6 @@ void musrfit_syntax()
cout << endl << endl;
}
//--------------------------------------------------------------------------
/**
* <p>
*
* \param msrHandler
*/
void musrfit_debug_info(PMsrHandler* msrHandler)
{
int i;
// print title
cout << endl << "----------";
cout << endl << "title = " << msrHandler->GetMsrTitle()->Data();
// print parameters
cout << endl << "----------";
cout << endl << "parameters";
PMsrParamList::iterator param_it;
for (param_it = msrHandler->GetMsrParamList()->begin(); param_it != msrHandler->GetMsrParamList()->end(); ++param_it) {
cout << endl << param_it->fNo << ": ";
cout << param_it->fName << ", ";
cout << param_it->fValue << ", ";
cout << param_it->fStep << ", ";
switch (param_it->fNoOfParams) {
case 5:
cout << param_it->fPosError;
break;
case 6:
cout << param_it->fLowerBoundary << ", ";
cout << param_it->fUpperBoundary;
break;
case 7:
cout << param_it->fPosError << ", ";
cout << param_it->fLowerBoundary << ", ";
cout << param_it->fUpperBoundary;
break;
default:
break;
}
}
// print theory
cout << endl << "----------";
PMsrLines::iterator theo_it;
theo_it = msrHandler->GetMsrTheory()->begin();
for (; theo_it != msrHandler->GetMsrTheory()->end(); ++theo_it)
cout << endl << theo_it->fLine.Data();
// print functions
// print run
cout << endl << "----------";
cout << endl << "runs";
PMsrRunList::iterator runs_it;
int runNo = 1;
for (runs_it = msrHandler->GetMsrRunList()->begin(); runs_it != msrHandler->GetMsrRunList()->end(); ++runs_it) {
cout << endl << "******";
cout << endl << "run no " << runNo++;
cout << endl << "run (name, beamline, institute, data-file-format): ";
cout << endl << " " << runs_it->fRunName[0] << ", " << runs_it->fBeamline[0] << ", " << runs_it->fInstitute[0] << ", " << runs_it->fFileFormat[0];
if (runs_it->fRunName.size() > 1) {
for (unsigned int i=1; i<runs_it->fRunName.size(); i++) {
cout << endl << "runadd (name, beamline, institute, data-file-format): ";
cout << endl << " " << runs_it->fRunName[i] << ", " << runs_it->fBeamline[i] << ", " << runs_it->fInstitute[i] << ", " << runs_it->fFileFormat[i];
}
}
cout << endl << "fittype " << runs_it->fFitType;
cout << endl << "alpha " << runs_it->fAlphaParamNo;
cout << endl << "beta " << runs_it->fBetaParamNo;
cout << endl << "norm " << runs_it->fNormParamNo;
cout << endl << "backgr.fit " << runs_it->fBkgFitParamNo;
cout << endl << "rphase " << runs_it->fPhaseParamNo;
cout << endl << "lifetime " << runs_it->fLifetimeParamNo;
if (runs_it->fLifetimeCorrection)
cout << endl << "lifetimecorrection true";
else
cout << endl << "lifetimecorrection false";
cout << endl << "map ";
for (PIntVector::iterator it = runs_it->fMap.begin(); it != runs_it->fMap.end(); ++it)
cout << *it << ", ";
cout << endl << "forward " << runs_it->fForwardHistoNo;
cout << endl << "backward " << runs_it->fBackwardHistoNo;
cout << endl << "backgr.fix ";
for (int i=0; i<2; i++)
cout << runs_it->fBkgFix[i] << ", ";
cout << endl << "background ";
for (int i=0; i<4; i++)
cout << runs_it->fBkgRange[i] << ", ";
cout << endl << "data ";
for (int i=0; i<4; i++)
cout << runs_it->fDataRange[i] << ", ";
cout << endl << "t0 ";
for (int i=0; i<2; i++)
cout << runs_it->fT0[i] << ", ";
cout << endl << "fit ";
for (int i=0; i<2; i++)
cout << runs_it->fFitRange[i] << ", ";
cout << endl << "packing " << runs_it->fPacking;
cout << endl << "rrffrequency " << runs_it->fRRFFreq;
cout << endl << "rrfpacking " << runs_it->fRRFPacking;
cout << endl << "alpha2 " << runs_it->fAlpha2ParamNo;
cout << endl << "beta2 " << runs_it->fBeta2ParamNo;
cout << endl << "right " << runs_it->fRightHistoNo;
cout << endl << "left " << runs_it->fLeftHistoNo;
}
// print commands
cout << endl << "----------";
cout << endl << "commands";
PMsrLines::iterator commands_it;
commands_it = msrHandler->GetMsrCommands()->begin();
++commands_it; // the first entry is just the COMMANDS block statment
for (; commands_it != msrHandler->GetMsrCommands()->end(); ++commands_it)
cout << endl << commands_it->fLine.Data();
// print plot
cout << endl << "----------";
PMsrPlotList::iterator plot_it;
i = 1;
for (plot_it = msrHandler->GetMsrPlotList()->begin(); plot_it != msrHandler->GetMsrPlotList()->end(); ++plot_it) {
cout << endl << i++ << ". plot " << plot_it->fPlotType;
cout << endl << "runs = ";
PComplexVector::iterator plot_run_it;
for (plot_run_it = plot_it->fRuns.begin(); plot_run_it != plot_it->fRuns.end(); ++plot_run_it) {
switch (plot_it->fPlotType) {
case MSR_PLOT_SINGLE_HISTO:
case MSR_PLOT_ASYM:
case MSR_PLOT_NON_MUSR:
cout << plot_run_it->Re() << ", ";
break;
case MSR_PLOT_ASYM_RRF:
cout << "(" << plot_run_it->Re() << "," << plot_run_it->Im() << "), ";
break;
default:
cout << endl << "??";
break;
}
}
if (plot_it->fTmin == -999.0) {
cout << endl << "range = autorange";
} else {
if (plot_it->fYmin == -999.0) { // only time range given
cout << endl << "range = [ " << plot_it->fTmin << ", " << plot_it->fTmax << "]";
} else {
cout << endl << "range = [ " << plot_it->fTmin << ", " << plot_it->fTmax << ", " << plot_it->fYmin << ", " << plot_it->fYmax << "]";
}
}
}
// print statistic
cout << endl << "----------";
cout << endl << "statistic";
PMsrLines::iterator statistic_it;
statistic_it = msrHandler->GetMsrStatistic()->fStatLines.begin();
++statistic_it; // the first entry is just the STATISTIC block statment
for (; statistic_it != msrHandler->GetMsrStatistic()->fStatLines.end(); ++statistic_it)
cout << endl << statistic_it->fLine.Data();
cout << endl << "----------" << endl;
}
//--------------------------------------------------------------------------
/**
* <p>
@ -273,11 +110,9 @@ void musrfit_write_ascii(TString fln, PRunData *data, int runCounter)
f << "% number of data values = " << data->fValue.size() << endl;
f << "% time (us), value, error, theory" << endl;
double time;
unsigned int idx;
for (unsigned int i=0; i<data->fValue.size(); i++) {
time = data->fDataTimeStart + (double)i*data->fDataTimeStep;
idx = static_cast<unsigned int>((time - data->fTheoryTimeStart)/data->fTheoryTimeStep);
f << time << ", " << data->fValue[i] << ", " << data->fError[i] << ", " << data->fTheory[idx] << endl;
f << time << ", " << data->fValue[i] << ", " << data->fError[i] << ", " << data->fTheory[i] << endl;
}
// close file
@ -377,19 +212,15 @@ void musrfit_write_root(TFile &f, TString fln, PRunData *data, int runCounter)
// create histos
Double_t diff = data->fDataTimeStep;
Double_t start = -diff/2.0;
Double_t end = data->fDataTimeStep*(data->fValue.size()-1)+diff/2.0;
Double_t end = data->fDataTimeStep*data->fValue.size();
TH1F *hdata = new TH1F("hdata", "run data", data->fValue.size(), start, end);
TH1F *htheo = new TH1F("htheo", "run theory", data->fValue.size(), start, end);
// fill data
double time;
unsigned int idx;
for (unsigned int i=0; i<data->fValue.size(); i++) {
hdata->SetBinContent(i, data->fValue[i]);
hdata->SetBinError(i, data->fError[i]);
time = data->fDataTimeStart + (double)i*data->fDataTimeStep;
idx = static_cast<unsigned int>((time - data->fTheoryTimeStart)/data->fTheoryTimeStep);
htheo->SetBinContent(i, data->fTheory[idx]);
hdata->SetBinContent(i+1, data->fValue[i]);
hdata->SetBinError(i+1, data->fError[i]);
htheo->SetBinContent(i+1, data->fTheory[i]);
}
hdata->SetMarkerStyle(20);
@ -492,7 +323,6 @@ int main(int argc, char *argv[])
{
bool show_syntax = false;
int status;
bool debug = false;
bool keep_mn2_output = false;
bool chisq_only = false;
TString dump("");
@ -529,8 +359,6 @@ int main(int argc, char *argv[])
keep_mn2_output = true;
} else if (!strcmp(argv[i], "-c") || !strcmp(argv[i], "--chisq-only")) {
chisq_only = true;
} else if (!strcmp(argv[i], "--debug")) {
debug = true;
} else if (!strcmp(argv[i], "--dump")) {
if (i<argc-1) {
dump = TString(argv[i+1]);
@ -606,9 +434,6 @@ int main(int argc, char *argv[])
return status;
}
if (debug)
musrfit_debug_info(msrHandler);
// read all the necessary runs (raw data)
PRunDataHandler *dataHandler;
if (startupHandler)