From 7cdaa0143e260bfd5e5263f26a7af04dc35619ff Mon Sep 17 00:00:00 2001
From: "Bastian M. Wojek" <basti@kth.se>
Date: Thu, 25 Sep 2008 18:28:49 +0000
Subject: [PATCH] Completely changed parts of the mlog2db, added new features,
 fixed some weaknesses - and probably added new ones.

---
 src/external/scripts/mlog2db | 769 ++++++++++++++++++++---------------
 1 file changed, 439 insertions(+), 330 deletions(-)

diff --git a/src/external/scripts/mlog2db b/src/external/scripts/mlog2db
index 6199c911..9eda110a 100755
--- a/src/external/scripts/mlog2db
+++ b/src/external/scripts/mlog2db
@@ -1,33 +1,50 @@
 #!/bin/bash
 
 if [ ! -e /usr/bin/awk ]; then 
-	echo Please make sure you have installed awk!
-	exit 1
+  echo Please make sure you have installed awk!
+  exit 1
 fi
 
-if [ $# -lt 3 ] ; then
-
+if [ $# -lt 2 ] ; then
+        
         cat <<EOFHELP
 
         "musrfit-mlog to db converter"
 
-USAGE:   mlog2db FIRSTRUN# LASTRUN# BLABLA [noheader | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
+USAGE:   mlog2db FIRSTRUN# LASTRUN# EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
          OR
-         mlog2db \[LIST OF RUNS\] BLABLA [noheader | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
+         mlog2db \[SPACE SEPARATED LIST OF RUNS\] EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
+         OR
+         mlog2db RUNLISTFILE EXTENSION [noheader | nosummary | fit-TEMPLATERUN# | -oDB_OUTPUT_FILE | -k]
 
 This small script converts subsequent musrfit output files (mlog) into one db file using bash/awk.
 
 Example 1:
-mlog2db 1423 1424 _ZF-LF-TF-supermeasurement
-generates the db-file "out.db" (or whatever filename you specified with the -o option) from 1423_ZF-LF-TF-supermeasurement.mlog and 1424_ZF-LF-TF-supermeasurement.mlog .
+mlog2db 1423 1425 _tf_h13
+generates the db-file "out.db" (or whatever filename you additionally specify with the -o option) from 1423_tf_h13.mlog, 1424_tf_h13.mlog, and 1425_tf_h13.mlog .
 
 Example 2:
-mlog2db [1423 1425] _ZF-LF-TF-supermeasurement
-generates the db-file "out.db" (or whatever filename you specified with the -o option) from 1423_ZF-LF-TF-supermeasurement.mlog and 1425_ZF-LF-TF-supermeasurement.mlog .
+mlog2db [1487 1435] _tf_h13
+generates the db-file "out.db" (or whatever filename you additionally specify with the -o option) from 1487_tf_h13.mlog and 1435_tf_h13.mlog .
 
-The output files in both examples above also include the db header.
+Example 3:
+mlog2db runs.txt _tf_h13
+generates the db-file "out.db" (or whatever filename you additionally specify with the -o option) from all runs listed in the ASCII-file
+"runs.txt" in the working directory. In the file it's also possible to include external parameters which should be put in the resulting db-file.
+The structure of the "runs.txt" is the following:
+
+RUN VAR1 VAR2 VAR3 ...
+2716 200 27.1 46.2 ...
+2787 205 27.1 46.3 ...
+2260 210 27.2 45.9 ...
+...
+
+The first line specifies the db-parameter names and labels and has to be present!
+
+The output files in all examples above also include the db header.
 In the case you are dealing with LEM-data AND have locally mounted the /mnt/data/nemu directory some available parameters like the 
 temperature or transport settings will be taken from the summary files and added to the db-file.
+You can suppress the reading of the summary files with the option "nosummary".
 
 If you want to generate a file without the header information just run the script with the option "noheader".
 
@@ -35,7 +52,7 @@ If you additionally want to fit some data using musrfit specify the option "fit-
 In this case either a mlog-outputfile or a msr-inputfile have to be present for the specified template run.
 The subsequent inputfiles will be created.
 
-Example 3:
+Example 4:
 mlog2db 200 220 _tf_h13 -oABC.db fit-199
 
 This will fit the runs 200 to 220 using musrfit. The file 199_tf_h13.mlog (or if that is not available: 199_tf_h13.msr) is used as 
@@ -43,358 +60,450 @@ template for the first musrfit input file. The results of the fits will be writt
 
 For keeping the MINUIT2 output files after calling musrfit, i.e. invoke musrfit with the option "--keep-mn2-output" just pass the option "-k" to mlog2db. If you pass this option to mlog2db but do not fit any data, the option will just be ignored.
 
+If your .mlog files do not have an extension as specified above like "200.mlog" you have to call the script as in the following example.
+
+Example 5:
+mlog2db 200 220 "" -oABC.db fit-199
+
 CAUTION:
 The "indexing number" of the .mlog has to be at the begin of the filename.
 Furthermore the data files that were fitted have to have the name "XXX_RUN#[_YYY]", where XXX,YYY are strings without whitespaces ("/" is OK).
 
 If you want to use the fitting feature, musrfit has to be installed either on the PATH or in the working directory.
 
+Those of you who do not like scripting without functions better do not look at the code. Still it is more or less straight forward.
+
 EOFHELP
 
 else
 
-export PATH=./:$PATH
+  export PATH=./:$PATH
 
-SUMMDIR="/mnt/data/nemu/summ"
+  SUMMDIR="/mnt/data/nemu/summ"
 
-# In case a list of runs is given by [...]
-if [ "${1:0:1}" == "[" ]; then 
-  RUNARRAY=($@)
-  if [ "$1" == "[" ]; then
-    RUNARRAY[0]=""
-  else
-    RUNARRAY[0]=${RUNARRAY[0]#"["}
-  fi
-  tLen=${#RUNARRAY[@]}
-  for (( i=0; i<${tLen}; i++ ));
-  do
+  # In case a list of runs is given by [...]
+  if [ "${1:0:1}" == "[" ]; then
+    RUNARRAY=($@)
     if [ "$1" == "[" ]; then
-      RUNARRAY[$i]=${RUNARRAY[ (( i + 1 )) ]}
+      RUNARRAY[0]=""
+    else
+      RUNARRAY[0]=${RUNARRAY[0]#"["}
     fi
-    if [ "${RUNARRAY[$i]:(-1)}" == "]" ]; then
-      if [ "${RUNARRAY[$i]}" == "]" ]; then
-        RUNARRAY[$i]=""
-        LASTRUN=$(( i - 1 ))
-        EMPTYENTRY=1
-      else
-        RUNARRAY[$i]=${RUNARRAY[$i]%"]"}
-        LASTRUN=$i
-        EMPTYENTRY=0
+    tLen=${#RUNARRAY[@]}
+    for (( i=0; i<${tLen}; i++ ))
+    do
+      if [ "$1" == "[" ]; then
+        RUNARRAY[$i]=${RUNARRAY[ (( i + 1 )) ]}
+      fi
+      if [ "${RUNARRAY[$i]:(-1)}" == "]" ]; then
+        if [ "${RUNARRAY[$i]}" == "]" ]; then
+          RUNARRAY[$i]=""
+          LASTRUN=$(( i - 1 )) # RUNARRAY-index of the last run
+        else
+          RUNARRAY[$i]=${RUNARRAY[$i]%"]"}
+          LASTRUN=$i # RUNARRAY-index of the last run
+        fi
+      fi
+    done
+
+    # search for the parameter including the "]"
+    for (( i=0; i<="$#"; i++ ))
+    do
+      RIGHTBRACKET=$( eval echo \$$i )
+      if [ "${RIGHTBRACKET:(-1)}" == "]" ]; then
+        RIGHTBRACKET=$i
+        break
+      fi
+    done
+
+    EXTENSION=$( eval echo \$$((RIGHTBRACKET + 1)) )
+    OPT_PAR_ONE=$( eval echo \$$((RIGHTBRACKET + 2)) )
+    OPT_PAR_TWO=$( eval echo \$$((RIGHTBRACKET + 3)) )
+    OPT_PAR_THREE=$( eval echo \$$((RIGHTBRACKET + 4)) )
+    OPT_PAR_FOUR=$( eval echo \$$((RIGHTBRACKET + 5)) )
+    OPT_PAR_FIVE=$( eval echo \$$((RIGHTBRACKET + 6)) )
+    RUNLIST_USED=0
+    NUM_OF_IND_VAR=1 # 1 for the run number
+
+  else 
+    ISDIGIT=$( echo $1 | awk '{ if (( $1 + 0 ) == $1 ) {print 1} else {print 0}}' ) # check if the first parameter is a number or not
+    if [ "$ISDIGIT" -eq 1 ]; then # start and end-runs are given
+      for (( j=0; j<=$2-$1; j++ ));
+      do
+        RUNARRAY[$j]=$(( $1 + $j ))
+      done
+      LASTRUN=$(( $2 - $1 )) # RUNARRAY-index of the last run
+      EXTENSION=$3
+
+      OPT_PAR_ONE=$4
+      OPT_PAR_TWO=$5
+      OPT_PAR_THREE=$6
+      OPT_PAR_FOUR=$7
+      OPT_PAR_FIVE=$8
+      RUNLIST_USED=0
+      NUM_OF_IND_VAR=1 # 1 for the run number
+
+    else # assume a runlist-file with "independent variables" is given
+      if [ ! -e $1 ]; then
+        echo
+        echo "The specified runlist file" $1 "is not present... Bye bye!"
+        echo
+        exit 1
+      fi
+
+      numberOfReadInLines=0
+
+      exec 3< $1 # open file for reading in the runlist-file the first time and get the runnumbers to be processed
+      while read -u 3 -a runList
+      do
+        if [ "$numberOfReadInLines" == "0" ]; then
+          NUM_OF_IND_VAR=${#runList[@]}
+        else
+          RUNARRAY[(( numberOfReadInLines - 1 ))]=${runList[0]}
+        fi
+        ((numberOfReadInLines++))
+      done
+      exec 3<&- # close file
+
+      LASTRUN=$(( ${#RUNARRAY[@]} - 1 )) # RUNARRAY-index of the last run
+      EXTENSION=$2
+
+      OPT_PAR_ONE=$3
+      OPT_PAR_TWO=$4
+      OPT_PAR_THREE=$5
+      OPT_PAR_FOUR=$6
+      OPT_PAR_FIVE=$7
+      RUNLIST_USED=1
+    fi
+  fi
+
+  # Check if fitting should be done
+  if [ "${OPT_PAR_ONE:0:3}" == "fit" ]; then
+    TEMP=${OPT_PAR_ONE:4}
+  elif [ "${OPT_PAR_TWO:0:3}" == "fit" ]; then
+    TEMP=${OPT_PAR_TWO:4}
+  elif [ "${OPT_PAR_THREE:0:3}" == "fit" ]; then
+    TEMP=${OPT_PAR_THREE:4}
+  elif [ "${OPT_PAR_FOUR:0:3}" == "fit" ]; then
+    TEMP=${OPT_PAR_FOUR:4}
+  elif [ "${OPT_PAR_FIVE:0:3}" == "fit" ]; then
+    TEMP=${OPT_PAR_FIVE:4}
+  fi
+
+  if [ "$TEMP" != "" ]; then # runs should be fitted using musrfit
+
+  # Check for musrfit on the PATH and if found continue with searching the fit-template
+  PATHTOMUSRFIT=$(echo `which musrfit`)
+    if [ "$PATHTOMUSRFIT" == "" ]; then
+      echo
+      echo "No musrfit executable was found on the PATH or in the current directory!"
+      echo "Please install musrfit first!"
+      echo
+      exit 1
+    else
+      if [ -e $TEMP$EXTENSION.mlog ]; then
+        TEMPLATE=$TEMP$EXTENSION.mlog
+      elif [ -e $TEMP$3.msr ]; then
+        TEMPLATE=$TEMP$EXTENSION.msr
       fi
     fi
-#    echo ${RUNARRAY[$i]}
-  done
+  fi
 
-  EXTENSION=${RUNARRAY[ (( LASTRUN + EMPTYENTRY + 1 )) ]}
-  OPT_PAR_ONE=${RUNARRAY[ (( LASTRUN + EMPTYENTRY + 2 )) ]}
-  OPT_PAR_TWO=${RUNARRAY[ (( LASTRUN + EMPTYENTRY + 3 )) ]}
-  OPT_PAR_THREE=${RUNARRAY[ (( LASTRUN + EMPTYENTRY + 4 )) ]}
-  OPT_PAR_FOUR=${RUNARRAY[ (( LASTRUN + EMPTYENTRY + 5 )) ]}
-
-else # start and end-runs are given
-  for (( j=0; j<=$2-$1; j++ ));
+  for (( q=0; q<=LASTRUN; q++ )) # loop over all RUNARRAY entries - the actual data-processing
   do
-    RUNARRAY[$j]=$(( $1 + $j ))
-#    echo ${RUNARRAY[$j]}
-  done
-  LASTRUN=$(( $2 - $1 ))
-  EXTENSION=$3
-  OPT_PAR_ONE=$4
-  OPT_PAR_TWO=$5
-  OPT_PAR_THREE=$6
-  OPT_PAR_FOUR=$7
-fi
+    COUNT=${RUNARRAY[$q]}
+    NEXTCOUNT=${RUNARRAY[ (( q + 1 )) ]}
+    NEXTINPUT=$NEXTCOUNT$EXTENSION.msr
+    FIRSTINPUT=${RUNARRAY[0]}$EXTENSION.msr
 
-# Check if fitting should be done
-if [ "${OPT_PAR_ONE:0:3}" == "fit" ]; then
-        TEMP=${OPT_PAR_ONE:4}
-else if [ "${OPT_PAR_TWO:0:3}" == "fit" ]; then
-        TEMP=${OPT_PAR_TWO:4}
-else if [ "${OPT_PAR_THREE:0:3}" == "fit" ]; then
-        TEMP=${OPT_PAR_THREE:4}
-else if [ "${OPT_PAR_FOUR:0:3}" == "fit" ]; then
-        TEMP=${OPT_PAR_FOUR:4}
-fi
-fi
-fi
-fi
+    if [ "$TEMP" != "" ]; then # if fitting should be done
+      if [ "$TEMPLATE" == "" ]; then
+        echo
+        echo "The specified musrfit template files "$TEMP$3".mlog and $TEMP$3.msr do not exist!"
+        echo
+        exit 1
+      fi
 
-if [ "$TEMP" != "" ]; then
+      # if it's the first run to be fitted, take the template and substitute the runnumber to match the first run
+      if [ "$COUNT" == "${RUNARRAY[0]}" ]; then
+        awk -v count=$TEMP -v nextcount=${RUNARRAY[0]} -v nextinput=$FIRSTINPUT '{
+          if(NR==1) print nextcount > nextinput
+          else if($1 == "RUN") {
+            if (substr(count,1,1) != "_"){ count = sprintf("_%04u", count); nextcount = sprintf("_%04u", nextcount);}
+            sub(count, nextcount, $0);
+            print $0 >> nextinput
+          }
+          else print $0 >> nextinput
+        }' $TEMPLATE
+      fi
 
-# Check for musrfit on the PATH and if found continue with searching the fit-template
+      if [ "${OPT_PAR_ONE}" == "-k" ] || [ "${OPT_PAR_TWO}" == "-k" ] || [ "${OPT_PAR_THREE}" == "-k" ] || [ "${OPT_PAR_FOUR}" == "-k" ] \
+      || [ "${OPT_PAR_FIVE}" == "-k" ]; then
+        MUSRFITPARAM="-k"
+      fi
 
-	PATHTOMUSRFIT=$(echo `which musrfit`)
-	if [ "$PATHTOMUSRFIT" == "" ]; then
-        	echo
-		echo No musrfit executable was found on the PATH or in the current directory!
-        	echo Please install musrfit first!
-		echo
-       		exit 1
-	else
+      musrfit $COUNT$EXTENSION.msr $MUSRFITPARAM # the fit
 
-	if [ -e $TEMP$EXTENSION.mlog ]; then
-		TEMPLATE=$TEMP$EXTENSION.mlog
-	else if [ -e $TEMP$3.msr ]; then
-		TEMPLATE=$TEMP$EXTENSION.msr
-	fi
-	fi
-	fi
-fi
+      if [ "$COUNT" != "${RUNARRAY[$LASTRUN]}" ]; then # create the next musrfit input file if not the last specified run was fitted already
+        awk -v count=$COUNT -v nextcount=$NEXTCOUNT -v nextinput=$NEXTINPUT '{
+          if(NR==1) print nextcount > nextinput
+          else if($1 == "RUN") {
+            if (substr(count,1,1) != "_"){ count = sprintf("_%04u", count); nextcount = sprintf("_%04u", nextcount);}
+            sub(count, nextcount, $0);
+            print $0 >> nextinput
+          }
+          else print $0 >> nextinput
+        }' $COUNT$EXTENSION.mlog
+      fi
+    fi
 
-for (( q=0; q<=${LASTRUN}; q++ ));
-do
-COUNT=${RUNARRAY[$q]}
-NEXTCOUNT=${RUNARRAY[ (( q + 1 )) ]}
-NEXTINPUT=$NEXTCOUNT$EXTENSION.msr
-FIRSTINPUT=${RUNARRAY[0]}$EXTENSION.msr
+    if [ ! -e $COUNT$EXTENSION.mlog ]; then
+      echo
+      echo "The specified musrfit output file "$COUNT$EXTENSION".mlog does not exist!"
+      echo
+      exit 1
+    fi
 
-#echo COUNT: $COUNT, NEXTCOUNT: $NEXTCOUNT, NEXTINPUT: $NEXTINPUT, FIRSTINPUT: $FIRSTINPUT
+    # if the "nosummary"-option is not set and the summary files are present, get some information from there
+    if [ "${OPT_PAR_ONE}" != "nosummary" ] && [ "${OPT_PAR_TWO}" != "nosummary" ] && [ "${OPT_PAR_THREE}" != "nosummary" ] \
+    && [ "${OPT_PAR_FOUR}" != "nosummary" ] && [ "${OPT_PAR_FIVE}" != "nosummary" ]; then
 
-if [ "$TEMP" != "" ]; then
-
-	if [ "$TEMPLATE" == "" ]; then
-		echo The specified musrfit template files $TEMP$3.mlog and $TEMP$3.msr do not exist!
-		exit 1
-	fi
-
-	if [ "$COUNT" == "${RUNARRAY[0]}" ]; then
-		awk -v count=$TEMP -v nextcount=${RUNARRAY[0]} -v nextinput=$FIRSTINPUT '{
-                        if(NR==1) print nextcount > nextinput
-                        else if($1 == "RUN") {
-                                if (substr(count,1,1) != "_"){ count = sprintf("_%04u", count); nextcount = sprintf("_%04u", nextcount);}
-                                sub(count, nextcount, $0);
-                                print $0 >> nextinput
-                        }
-                        else print $0 >> nextinput
-                }' $TEMPLATE
-	fi
-	
-	if [ "${OPT_PAR_ONE}" == "-k" ] || [ "${OPT_PAR_TWO}" == "-k" ] || [ "${OPT_PAR_THREE}" == "-k" ] || [ "${OPT_PAR_FOUR}" == "-k" ]; then
-        	MUSRFITPARAM="-k"
-        fi
-
-        musrfit $COUNT$EXTENSION.msr $MUSRFITPARAM
-
-	if [ "$COUNT" != "${RUNARRAY[$LASTRUN]}" ]; then
-		awk -v count=$COUNT -v nextcount=$NEXTCOUNT -v nextinput=$NEXTINPUT '{
-			if(NR==1) print nextcount > nextinput
-			else if($1 == "RUN") {
-				if (substr(count,1,1) != "_"){ count = sprintf("_%04u", count); nextcount = sprintf("_%04u", nextcount);}
-				sub(count, nextcount, $0);
-				print $0 >> nextinput
-			}
-			else print $0 >> nextinput
-		}' $COUNT$EXTENSION.mlog
-	fi
-fi
-
-if [ ! -e $COUNT$EXTENSION.mlog ]; then
-                echo The specified musrfit output file $COUNT$EXTENSION.mlog does not exist!
-                exit 1
-fi
-
-if [ -d $SUMMDIR ]; then
-RUNNUMBER=$( awk '{
-		if(NR==1) X=0
-		if($1 ~ /^RUN/ && X==0) {
-			split($2, runNumber, "_")
-			if(runNumber[1] ~ /lem/ && runNumber[2] != "his") {print runNumber[2] }
-			if(runNumber[1] ~ /lem/ && runNumber[2] == "his") {print substr(runNumber[3],1,4) }
-			X=1 
-		}
-	}' $COUNT$EXTENSION.mlog )
-
-RUNYEAR=$( awk '{
-                if(NR==1) X=0
-                if($1 ~ /^RUN/ && X==0) {
-                        split($2, runNumber, "_")
-                        if(runNumber[1] ~ /lem/) {print substr(runNumber[1],length(runNumber[1])-1)}
-			else print "XX"
-			X=1
-                }
+      if [ -d $SUMMDIR ]; then
+        # extract runnumber from mlog-file
+        RUNNUMBER=$( awk '{
+          if(NR==1) X=0
+          if($1 ~ /^RUN/ && X==0) {
+            split($2, runNumber, "_")
+            if(runNumber[1] ~ /lem/ && runNumber[2] != "his") {print runNumber[2] }
+            if(runNumber[1] ~ /lem/ && runNumber[2] == "his") {print substr(runNumber[3],1,4) }
+            X=1 
+          }
         }' $COUNT$EXTENSION.mlog )
 
-if [ "$RUNYEAR" != "XX" ]; then
+        # extract runyear from mlog-file in case of LEM-data
+        RUNYEAR=$( awk '{
+          if(NR==1) X=0
+          if($1 ~ /^RUN/ && X==0) {
+            split($2, runNumber, "_")
+            if(runNumber[1] ~ /lem/) {print substr(runNumber[1],length(runNumber[1])-1)}
+            else print "XX"
+            X=1
+          }
+        }' $COUNT$EXTENSION.mlog )
 
-SUMMFILE=$SUMMDIR/20$RUNYEAR/lem$RUNYEAR\_$RUNNUMBER.summ
+        if [ "$RUNYEAR" != "XX" ]; then # in case of LEM-data search the summary-file
+          SUMMFILE=$SUMMDIR/20$RUNYEAR/lem$RUNYEAR\_$RUNNUMBER.summ
+          TITLE=$( awk '{ if(NR==4) print $0 }' $SUMMFILE )
+          ENERGY=$( awk '{ if($0 ~ /implantation energy/) print $(NF-1)}' $SUMMFILE ) 
+          TEMPERATURE=$( awk '{ if($1 == "Sample_CF1") print $(NF-1)}' $SUMMFILE )
+          RALRAR=$( awk '{ if($5 == "RA-L") RAL=$7; if($1 == "RA-R") { RAR=$3; print RAL-RAR; nextfile } }' $SUMMFILE )
+          RATRAB=$( awk '{ if($5 == "RA-T") RAT=$7; if($1 == "RA-B") { RAB=$3; print RAT-RAB; nextfile } }' $SUMMFILE )
+          TRANSPORT=$( awk '{ if($1 == "Moderator") print $3}' $SUMMFILE )
+        fi
+      fi
+    fi
 
-TITLE=$( awk '{ if(NR==4) print $0 }' $SUMMFILE )
+    # put together all data to db-format and write it to the file
+    awk -v optPARone=$OPT_PAR_ONE -v optPARtwo=$OPT_PAR_TWO -v optPARthree=$OPT_PAR_THREE -v optPARfour=$OPT_PAR_FOUR \
+    -v optPARfour=$OPT_PAR_FIVE -v runList=$RUNLIST_USED -v numIndVar=$NUM_OF_IND_VAR '{
 
-ENERGY=$( awk '{ if($0 ~ /implantation energy/) print $(NF-1)}' $SUMMFILE ) 
+      outfile="out.db"
+      if(optPARone ~ /^-o/) outfile = substr(optPARone,3)
+      if(optPARtwo ~ /^-o/) outfile = substr(optPARtwo,3)
+      if(optPARthree ~ /^-o/) outfile = substr(optPARthree,3)
+      if(optPARfour ~ /^-o/) outfile = substr(optPARfour,3)
+      if(optPARfive ~ /^-o/) outfile = substr(optPARfive,3)
 
-TEMPERATURE=$( awk '{ if($1 == "Sample_CF1") print $(NF-1)}' $SUMMFILE )
+      FS = " "
+      OFS = " "
 
-RALRAR=$( awk '{ if($5 == "RA-L") RAL=$7; if($1 == "RA-R") { RAR=$3; print RAL-RAR; nextfile } }' $SUMMFILE )
+      if(NR==1){title=$0; X=0; Y=0; i=1}
 
-RATRAB=$( awk '{ if($5 == "RA-T") RAT=$7; if($1 == "RA-B") { RAB=$3; print RAT-RAB; nextfile } }' $SUMMFILE )
+      if(NR>4){
+        if(X == 0){
+          if($0 != ""){
+            parArray[i] = $2
+            dataArray[i] = $3
+            if($4 ~ /^-/)
+              negErrArray[i] = (-1.0)*$4
+            else
+              negErrArray[i] = $4
+            if($5 ~ /none/)
+              posErrArray[i] = $4
+            else
+              posErrArray[i] = $5
+            i++
+          }
+          if($0 == "") X=1
+        }
+      }
 
-TRANSPORT=$( awk '{ if($1 == "Moderator") print $3}' $SUMMFILE )
-
-fi
-
-fi
-
-awk -v optPARone=$OPT_PAR_ONE -v optPARtwo=$OPT_PAR_TWO -v optPARthree=$OPT_PAR_THREE -v optPARfour=$OPT_PAR_FOUR '{  
-	
-	outfile="out.db"
-	if(optPARone ~ /^-o/) outfile = substr(optPARone,3)
-	if(optPARtwo ~ /^-o/) outfile = substr(optPARtwo,3)
-	if(optPARthree ~ /^-o/) outfile = substr(optPARthree,3)
-	if(optPARfour ~ /^-o/) outfile = substr(optPARfour,3)
-
-	FS = " "
-        OFS = " "
-
-	if(NR==1){title=$0; X=0; Y=0; i=1}
-
-	if(NR>4){
-                if(X == 0){
-                        if($0 != ""){
-                                parArray[i] = $2
-				dataArray[i] = $3
-				if($4 ~ /^-/) 
-					negErrArray[i] = (-1.0)*$4
-				else
-					negErrArray[i] = $4
-				
-				if($5 ~ /none/)
-					posErrArray[i] = $4
-				else
-					posErrArray[i] = $5
-				i++                         
-                        }
-                        if($0 == "") X=1
-		}
-	}
-
-	if($1 ~ /^RUN/ && X==1){ split($2, runNumber, "_"); X=2 }	
-	
-	if($1 ~ /^chi/ && X==2){
-		parArray[i] = "CHISQ"
-                parArray[i+1] = "NDF"
-                parArray[i+2] = "CHISQred"
-                parArray[i+3] = "RUN"
-
-		sub(/,/, "", $3); sub(/,/, "", $6);
-
-		dataArray[i] = $3
-                dataArray[i+1] = $6
-                dataArray[i+2] = $9
-		
-		for (j in runNumber) {
-			if ( runNumber[j] ~ /^0/ ) {
-				sub(/0+/, "", runNumber[j])
-			}
-			if (int(runNumber[j]) == runNumber[j]) {
-				dataArray[i+3] = runNumber[j]
-				break
-			}
-			else dataArray[i+3] = "0000"
-		}
-
-		negErrArray[i] = ""
-                negErrArray[i+1] = ""
-                negErrArray[i+2] = ""
-                negErrArray[i+3] = ""
-
-		posErrArray[i] = ""
-                posErrArray[i+1] = ""
-                posErrArray[i+2] = ""
-                posErrArray[i+3] = ""	
-
-	
-# Output to file in the case, the LEM summary file is accessible
-
-		if("'"$TEMPERATURE"'" != "") {
-
-			if("'"$COUNT"'" == "'"${RUNARRAY[0]}"'" && optPARone != "noheader" && optPARtwo != "noheader" && optPARthree != "noheader" && optPARfour != "noheader"){
-				print "TITLE" >> outfile
-        			print ">>>Put your title here<<<\n" >> outfile
-        			print "Abstract" >> outfile
-        			print ">>>Put your abstract here<<<\n" >> outfile
-        			print "LABELS" >> outfile
-				print "T [K]" >> outfile
-				print "Tr [kV]" >> outfile
-				print "E [keV]" >> outfile
-				print "RAL-RAR [kV]" >> outfile
-				print "RAT-RAB [kV]" >> outfile
-				
-				for(k=1;k<i+4;k++){
-					print parArray[k] >> outfile
-				}
-
-				$1 = "Data"
-				$2 = "T"
-				$3 = "Tr"
-				$4 = "E"
-				$5 = "RALRAR"
-				$6 = "RATRAB"
-				for(k=1;k<i+4;k++){
-					$(k+6)=parArray[k]
-				}
-				print "\n" $0 >> outfile
-				print "\\-e" >> outfile
-			}
-
-			print "T = " "'"$TEMPERATURE"'" ",,,\\" >> outfile
-			print "Tr = " "'"$TRANSPORT"'" ",,,\\" >> outfile
-			if ("'"$ENERGY"'" != "") print "E = " "'"$ENERGY"'" ",,,\\" >> outfile
-			else print "E = -999,,,\\" >> outfile
-			if ("'"$RALRAR"'" != "") print "RALRAR = " "'"$RALRAR"'" ",,,\\" >> outfile	
-			else print "RALRAR = -999,,,\\" >> outfile
-			if ("'"$RATRAB"'" != "") print "RATRAB = " "'"$RATRAB"'" ",,,\\" >> outfile
-			else print "RATRAB = -999,,,\\" >> outfile
-
-			for(l=1;l<i+3;l++){
-				print parArray[l] " = " dataArray[l] ", " posErrArray[l] ", " negErrArray[l] ",\\" >> outfile
-			}
-
-			print dataArray[i+3] ",,, " "'"$TITLE"'" >> outfile
-		
-			if("'"$COUNT"'" == "'"${RUNARRAY[$LASTRUN]}"'") print "\n" >> outfile
-
-		}
-
-# If we do not have the information from the summary file
-
-		else {
-			if("'"$COUNT"'" == "'"${RUNARRAY[0]}"'" && optPARone != "noheader" && optPARtwo != "noheader" && optPARthree != "noheader" && optPARfour != "noheader"){
-                                print "TITLE" >> outfile
-                                print ">>>Put your title here<<<\n" >> outfile
-                                print "Abstract" >> outfile
-                                print ">>>Put your abstract here<<<\n" >> outfile
-                                print "LABELS" >> outfile
-				print "T [K]" >> outfile
-				
-                                for(k=1;k<i+4;k++){
-                                        print parArray[k] >> outfile
-                                }
-
-                                $1 = "Data"
-				$2 = "T"
-                                for(k=1;k<i+4;k++){
-                                        $(k+2)=parArray[k]
-                                }
-                                print "\n" $0 >> outfile
-                                print "\\-e" >> outfile
-                        }
-
-			print "T = 000,,,\\" >> outfile
-
-                        for(l=1;l<i+3;l++){
-                                print parArray[l] " = " dataArray[l] ", " posErrArray[l] ", " negErrArray[l] ",\\" >> outfile
-                        }
-
-                        print dataArray[i+3] ",,, " title >> outfile
-
-                        if("'"$COUNT"'" == "'"${RUNARRAY[LASTRUN]}"'") print "\n" >> outfile
-
-
-		}
-
-	}
-}' $COUNT$EXTENSION.mlog
-
-done
+      if($1 ~ /^RUN/ && X==1){ split($2, runNumber, "_"); X=2 }	
 
+      if($1 ~ /^chi/ && X==2){
+        parArray[i] = "CHISQ"
+        parArray[i+1] = "NDF"
+        parArray[i+2] = "CHISQred"
+        parArray[i+3] = "RUN"
+
+        sub(/,/, "", $3); sub(/,/, "", $6);
+
+        dataArray[i] = $3
+        dataArray[i+1] = $6
+        dataArray[i+2] = $9
+
+        for (j in runNumber) {
+          if ( runNumber[j] ~ /^0/ ) {
+            sub(/0+/, "", runNumber[j])
+          }
+          if (int(runNumber[j]) == runNumber[j]) {
+            dataArray[i+3] = runNumber[j]
+            break
+          }
+          else dataArray[i+3] = "0000"
+        }
+
+        negErrArray[i] = ""
+        negErrArray[i+1] = ""
+        negErrArray[i+2] = ""
+        negErrArray[i+3] = ""
+
+        posErrArray[i] = ""
+        posErrArray[i+1] = ""
+        posErrArray[i+2] = ""
+        posErrArray[i+3] = ""	
+
+        # Read in the runlist-variable names
+        if(runList == 1){
+          getline line < "'"$1"'"
+          split(line, indVar, " ")
+        }
+
+        # Output to file in the case, the LEM summary file is accessible and the option "nosummary" is not set
+
+        if("'"$TEMPERATURE"'" != "") {
+
+          # Write the db-header
+          if("'"$COUNT"'" == "'"${RUNARRAY[0]}"'" && optPARone != "noheader" && optPARtwo != "noheader" && optPARthree != "noheader" && optPARfour != "noheader" && optPARfive != "noheader"){
+
+            print "TITLE" >> outfile
+            print ">>>Put your title here<<<\n" >> outfile
+            print "Abstract" >> outfile
+            print ">>>Put your abstract here<<<\n" >> outfile
+            print "LABELS" >> outfile
+            print "T [K]" >> outfile
+            print "Tr [kV]" >> outfile
+            print "E [keV]" >> outfile
+            print "RAL-RAR [kV]" >> outfile
+            print "RAT-RAB [kV]" >> outfile
+
+            if(runList == 1){
+              for(k=2;k<=numIndVar;k++){print indVar[k] >> outfile}
+            }
+
+            for(k=1;k<i+4;k++){
+              print parArray[k] >> outfile
+            }
+
+            $1 = "Data"
+            $2 = "T"
+            $3 = "Tr"
+            $4 = "E"
+            $5 = "RALRAR"
+            $6 = "RATRAB"
+
+            for(k=1;k<numIndVar;k++){
+              $(k+6)=indVar[k+1]
+            }
+
+            for(k=1;k<i+4;k++){
+              $(k+6+numIndVar-1)=parArray[k]
+            }
+
+            print "\n" $0 >> outfile
+            print "\\-e" >> outfile
+          }
+
+          # Write the data-block
+          print "T = " "'"$TEMPERATURE"'" ",,,\\" >> outfile
+          print "Tr = " "'"$TRANSPORT"'" ",,,\\" >> outfile
+          if ("'"$ENERGY"'" != "") print "E = " "'"$ENERGY"'" ",,,\\" >> outfile
+          else print "E = -999,,,\\" >> outfile
+          if ("'"$RALRAR"'" != "") print "RALRAR = " "'"$RALRAR"'" ",,,\\" >> outfile	
+          else print "RALRAR = -999,,,\\" >> outfile
+          if ("'"$RATRAB"'" != "") print "RATRAB = " "'"$RATRAB"'" ",,,\\" >> outfile
+          else print "RATRAB = -999,,,\\" >> outfile
+
+          if(runList == 1) { # process the "independent variables" from the file
+            while((getline line < "'"$1"'") > 0){
+              split(line, indVarValue, " ")
+              if (indVarValue[1] == "'"$COUNT"'"){
+                for(k=2;k<=numIndVar;k++){print indVar[k] " = " indVarValue[k] ",,,\\" >> outfile}
+                break
+              }
+            }
+          }
+
+          for(l=1;l<i+3;l++){
+            print parArray[l] " = " dataArray[l] ", " posErrArray[l] ", " negErrArray[l] ",\\" >> outfile
+          }
+
+          print dataArray[i+3] ",,, " "'"$TITLE"'" >> outfile
+
+          if("'"$COUNT"'" == "'"${RUNARRAY[$LASTRUN]}"'") print "\n" >> outfile
+        }
+
+        # If we do not have the information from the summary file or "nosummary" is set
+        else {
+          if("'"$COUNT"'" == "'"${RUNARRAY[0]}"'" && optPARone != "noheader" && optPARtwo != "noheader" && optPARthree != "noheader" && optPARfour != "noheader" && optPARfive != "noheader"){
+
+            print "TITLE" >> outfile
+            print ">>>Put your title here<<<\n" >> outfile
+            print "Abstract" >> outfile
+            print ">>>Put your abstract here<<<\n" >> outfile
+            print "LABELS" >> outfile
+
+            if(runList == 1){
+              for(k=2;k<=numIndVar;k++){print indVar[k] >> outfile}
+            }
+
+            for(k=1;k<i+4;k++){
+              print parArray[k] >> outfile
+            }
+
+            $1 = "Data"
+
+            for(k=1;k<numIndVar;k++){
+              $(k+1)=indVar[k+1]
+            }
+
+            for(k=1;k<i+4;k++){
+              $(k+1+numIndVar-1)=parArray[k]
+            }
+
+            print "\n" $0 >> outfile
+            print "\\-e" >> outfile
+          }
+
+          if(runList == 1) {
+            while((getline line < "'"$1"'") > 0){
+              split(line, indVarValue, " ")
+              if (indVarValue[1] == "'"$COUNT"'"){
+                for(k=2;k<=numIndVar;k++){print indVar[k] " = " indVarValue[k] ",,,\\" >> outfile}
+                break
+              }
+            }
+          }
+
+          for(l=1;l<i+3;l++){
+            print parArray[l] " = " dataArray[l] ", " posErrArray[l] ", " negErrArray[l] ",\\" >> outfile
+          }
+
+          print dataArray[i+3] ",,, " title >> outfile
+
+          if("'"$COUNT"'" == "'"${RUNARRAY[$LASTRUN]}"'") print "\n" >> outfile
+        }
+      }
+    }' $COUNT$EXTENSION.mlog
+  done
 fi